#NEXUS [written Thu Jul 23 11:23:13 EEST 2015 by Mesquite version 2.75 (build 564) at Eugene-PC/127.0.0.1] BEGIN TAXA; TITLE Taxa_for_Tropicoporus_phylogeny; DIMENSIONS NTAX=23; TAXLABELS Mensularia_radiata_KC414257 Tropicoporus_guanacastensis_KP030792 Tropicoporus_linteus_JQ860321 Tropicoporus_pseudolinteus_AF534075 Sanghuangporus_sanghuang_JN794061 Tropicoporus_cubensis_JQ860325 Tropicoporus_rudis_KP030796 Tropicoporus_sideroxylicola_KC778782 Tropicoporus_dependens_KC778779 Tropicoporus_guanacastensis_KP030794 Tropicoporus_linteus_JQ860323 Tropicoporus_stratificans_KM199688 Tropicoporus_cubensis_JQ860324 Tropicoporus_tropicalis_AY599487 Tropicoporus_excentrodendri_KP030791 Tropicoporus_rudis_KP030797 Tropicoporus_linteus_JQ860322 Tropicoporus_tropicalis_KF695121 Sanghuangporus_baumii_JN642565 Tropicoporus_stratificans_KM199689 Tropicoporus_pseudolinteus_KC778781 Tropicoporus_dependens_KC778778 Tropicoporus_tropicalis_AY641432 ; END; BEGIN CHARACTERS; TITLE TropicoporusITS; DIMENSIONS NCHAR=760; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Mensularia_radiata_KC414257 GTTGCTGGCGTGGAAA-----CACGTATGTGCACGGCCTTCGTGCTC---ATCC-ACTCA--CCCTTGTGCAC-------------------------------------CTTATCGAAGTT-AGTAATACTTTTCTATCGGGCTGTAATTGGGCTG-----CTGG----------------TAT-TATTAGTC-------GCAGGGCGAAAATGC--------------TAGTGCTCTTGGTCTGAGGG-------GAAG----------------------GGACGAACAC-TTTGA-------CTTTA---CAAACACATACTTTGTC-TTGTAGAATG---TAATG-----CTCCTTGTGGGCGA--AATG-AAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTTTTCCGAGGGGCATGCCTGTTTGAGTGTCATGTTTATCTCAATCTCCTTGTC-----TTCTT-AATTGAAG----TCTCG-GGGCTTGGATTTGGAGG----TCTTGCTGGCAGTT------ATGTCGGCTCCTCTTAAATACATTAGCTGGACTTTGGTTCGCGTTAC-TGGTGTAATAG--ATTTATGTTCGC---CAGACGCTTGCCTAATGGGTCT-GCTTCTAATCGTCT-------TCGGACAAGGTC Tropicoporus_guanacastensis_KP030792 GCTGCTGGTGCGGAAA-----CGCGCATGTGCACGGCTTTCGCGCTC-AAATCC-ACTCAA-CCCCTGTGTGC---------------------------ACCTTTCTATCTTGTCGAAGCG-AGTAGT--------------------TTGAGACCGTCCCCCATGGGGGGG------ACGGTT-AGCCGGTA-------GAAAGGGAGGGTAA---------------CAG--CTCCATTCGAAAGGC-GGGGGGGAAGAGCC--------CCTAACTCTCGAGCGAAAGC-TTTGGCTTGTA-TTTAT---AAATCACAGTTGATGTC-TTGT-GAATG---TGATG-----CTCCTTGTGGGCGA--AAATGAAATACAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATGTTAATCTCAAATCACTCGTC----TTTTTT-AATCGAAAG---GCTTG-TGGTTTGGACTTGGAGG---TTTTTGCTGGCTC--------CGGTCGGCTCCTCTTAAATGCATTAGCTGGGCTTTGGCTCGCGTTCG-TGGTGTAATAGTTAATTCTTTCGCC---TGAGTGCCTGTCTGACGGGTCC-GCTTCCAATCGTCCGC-TTAGTCGGACAAGGCC Tropicoporus_linteus_JQ860321 GCTGCTGGTGCGGAAA-----CGTACATGTGCACGGCTTTCGCGCTC-AAATCC-ACTCAA-CCCCTGTGCAC------------------------------CTTATATCCTGTCGAAGCG-AGTAGT--------------------TTGAGATC-----AAAG--G----------------------------------------------------------------------------------------GTGTGGTCACCCTT--AGTAG--CTCGAGCGAAAGC-TTTGGCTTGTA-TTTAA--CAAACCACTATTATTGTC-TTGT-GAATGG--TAATG-----CTCCTTGTGGGCGA--AAAT-AAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATGTTAATCTCAAACCACTYG-------------------------TTTTG-TGGTTTGGACTTGGAGG---TTTCTGCTGGCCCCT---GCGGGGTCGGCTCCTCTGAAATGCATTAGCTGGGCTTYGGCTCGCGTTTGTTGGTGTAATAGTTAATYSTTTCACC---TGAGCGCTTGCCTGATGGGCCT-GCTTCTAATCGTCTGC-TTGGTCGGACAAGGTC Tropicoporus_pseudolinteus_AF534075 GTTGCTGGTGCGGAAA-----CGCGCATGTGCACGGCTTTCGCGCTC-AAATCC-ACTCAA-CCCCTGTGCACCTTTATCCTGTCGAAGCGAGTAGTTTGGGACCTTTATCCTGTCGAAGCG-AGTAGT--------------------TTGGGACC-----TTTG--AGGACGTGTGTAGCAGT-AGCCGGCCAAGTAGAAAGGGGAAGGGTAA---------------CAGCTCTCCATTCGAAAGGC-------GAAGCGTCGTCTCTCGTCTAG--CTCGGGCGAAAGC-TTTGGCTTGTA-TTTAA---AAACCACATTTGTTGTC-TTGT-GAATGC--AAACG-----CTCCTCGTGGGCGA--AAAT-AAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATGTTAATCTCAAATCACTTGTC----TTTTTTAAATCGAAAG---GCTCG-TGGTTTGGACTTGGAGG---TTTATGCCGGCTC--------CGGTCGGCTCCTCTTAAATGCATTAGCTGGGCTGTGGCTCGCGTTTG-TGGTGTGATAGTTAAGTCTTTCGCC---TGAGCGCTTGCCTGAGGGGTCC-GCTTCTAATCGTCTGC-TTGGTCGGACAAGGCC Sanghuangporus_sanghuang_JN794061 GCTGCTGGTGCGAAAT-----CGCGCATGTGCACGGTCTTCGCGCTC-AAATCCAACTCAAACCCCTGTGCAC-CTT-------------------------ATATATCGCGAGTCGAAGTT-AGTAGC--------------------CTGAGGTC-----TTGT--A-------------AGT-AATTAGTA-------GAAGGGCGAAAGCG--AGTCTTGCTCGT-TAG-GTAGCCTTTCGAAAAT-------GAAAGCG---------AGTGC--GTCGGGTGAAGAC-TTCGGCTTGTC-GTTAC--AAAACACCTTATATTGTCTTTGT-GAATG---TAATG-----CTCCTTGTGGGCGA--AAAT-AAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATGTTTATCTCAAACCGCTCGTC----TTTCTT-AATTGAAGG---GCTTG-AGGTTTGGACTTGGAGG--TTTACTGCTGGCGCCTTTCGAGGGGTCGGCTCCTCTTAAATACATTAGCTGGGCTTTGGCTCGCGTTTA-CGGTGTAATAGTTGATTCCATTCACCAACGAGCGCTTGCCTGACGAGCTT-GCTTCTAGCCGTCCGC-GTCGTCGGACAAGGAG Tropicoporus_cubensis_JQ860325 GCTGCTGGCGCGGAAA-----CGCGCATGTGCACGGCTCTCGCGCTCAAAATCC-ACTCAA-CCCCTGTGCAC-----------------------------CCTTCTATCCTGTCGAAGCGAAGTAGT--------------------TCGGGGAT-----CCAT--GGGA-----------------------------------------------------------------CCGTTCGTTAGGC-----------GGCC--------CCTAA--CTCGAGCGAAAGC-TTTGGCTTGTA-TTTAT---AAACCACAGTTGATGTC-TTGT-GAATG---TGATG-----CTCCTAGTGGGCGA--AAAC-AAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATGTTAACCTCAAATCGCTCGTCTTTTTTTTTT-AATCGAAAG---GCTTG-TGGTTTGGACTTGGAGG-YTTTTTTGCTGSCTC--------CGGYCGSCTCCTCTTAAATGCATTAGCTGGGCTTTGGCTCGCGTTCG-TGGTGTAATAGTTAATTCTTTCGCC---TGAGCGCTTGTCTGACTGGCCT-GCTTCTAATCGTCCGC-TTCGTTGGACAAGGTC Tropicoporus_rudis_KP030796 GCTGCTGGCGCGGAAA-----CGCGCATGTGCACGGCCTTCGCGCTC-AAATCC-ACTCAACCCCCTGTGCAC-------------------------------CTTTATCCTGTCGGAGCG-AGTAGC--------------------TTGAGACC-----TTTT--TGGGA------CGTAGT-AGCCGGTA--ATAGTAGAAAGGAGGGTAA---------------CAG--CTCCATTCGAAAGGC-------GAAAAGGC--------CCTAA--CTCGAGCGAAAAC-TTTGGCTTGTATTTTAT---AAACCACATTTGTTGTC-CTGT-GAATGT--TAATG-----CTCCTTGTGGGCGA--GAAT-AAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATGTTAACCTCAAATCACACTTG----TCTTTT------GGGG---CTTTG-TGGTTTGGACCTGGAGG---TTTCTGCTGGCCC------TGCGGTCGGCTCCTCTTAAATGCATTAGCTGGGTTTCGGCTCGCGTTTG-TGGTGTAATAGTTAATTCTTTCGCC---TGAGCGCTTGCCTGATGGGCCC-GCTTCTAATTGTCTGC-TTGGTCGGACAAGGTY Tropicoporus_sideroxylicola_KC778782 GCTGCTGGCGCGGAAA-----CGCGCATGTGCACGGCTTTCGCGCTC-AAATCC-ACTCAA-CCCCTGTGCAC-------------------------------CTTTGTCCTGTCGAAGCA-AGTAGT--------------------TCCGAGAC-----TTTG--GGGAC------CGTAGT-AGCCGGTA-------GAAAGGAGGCGGGGGGCGGTTAGCTCCCCCAG--CTCCATTCGAAGAGC-------GAAAAGG---------CCCGG--CTCGAGCGAAAAC-TTTGGCTTGTA-TCTAT---AAACCACAGATATTGTC-TTGT-GAATG---TGATGGCCTACACCTTGTGGGCGA--AAAC-AAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATGTTAATCTCAAACCACACGTC----TTTTTT-AATCGAAGGGC-TTTTG-TGGTTTGGACTTGGAGGATTCTTCTGCTGGCTTC-------GGTCCGGCTCCTCTCAAATGCATTAGCTGGGCTTTGGCTCGCGTTTA-TGGTGTAATAGTTAATTCTTTCGCC---CGAGCGCTTGCCTGATGGGCCC-GCTTCTAATCGTCCGCTTTAGTCGGACAAGGCC Tropicoporus_dependens_KC778779 GCTGCTGGCGCGGAAA-----CGCGCATGTGCACGGCTTTTGCGCTC-AAATCC-ACTCAACCCCCTGTGTGC---------------------------ACCTCTCTATCTTGTCGAAGCG-AGTAGT--------------------TTGGGACCGGACCCCAT--GGGGG------ACGGCT-AGCCGGTA-------GAAAGGGAGGGTAA---------------CAG--CTCCATTCGAAAGGC---GGGGGAAGAGCC--------CCTAACTCTCGAGCGAAAGC-TTTGGCTTGTA-TTCAT---AAATCACAGTTGATGTC-TTGT-GAATG---TGATG-----CTCCTTGTGGGCGA--AAATGAAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATGTTAATCTCAAATCGCTCGTC----TTTTTT-AATCGAAAG---GCTTG-CGGTTTGGACTTGGAGG---TTTTTGCTGGCTC--------TGGTCGGCTCCTCTTAAATGCATTAGCTGGGCTTTGGCTCGCGTTCG-TGGTGTAATAGTTAATTCTTTCGCC---TGAGCGCCTGTCTGACGGGTCC-GCTTCCAATCGTCCGC-TTAGTCGGACAG-GCC Tropicoporus_guanacastensis_KP030794 GCTGCTGGTGCGGAAA-----CGCGCATGTGCACGGCTTTCGCGCTC-AAATCC-ACTCAA-CCCCTGTGTGC---------------------------ACCTTTCTATCTTGTCGAAGCG-AGTAGT--------------------TTGAGACCGTCCCCCAT--GGGGG------ACGGTT-AGCCGGTA-------GAAAGGGAGGGTAA---------------CAG--CTCCATTCGAAAGGCGGGGGGGGGAGAGCC--------CCTAACTCTCGAGCGAAAGC-TTTGGCTTGTA-TTTAT---AAATCACAGTTGATGTC-TTGT-GAATG---TGATG-----CTCCTTGTGGGCGA--AAATGAAATACAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATGTTAATCTCAAATCACTCGTC----TTTTTT-AATCGAAAG---GCTTG-TGGTTTGGACTTGGAGG---TTTTTGCTGGCTC--------CGGTCGGCTCCTCTTAAATGCATTAGCTGGGCTTTGGCTCGCGTTCG-TGGTGTAATAGTTAATTCTTTCGCC---TGAGCGCCTGTCTGACGGGTCC-GCTTCCAATCGTCCGC-TTAGTCGGACAA-GMC Tropicoporus_linteus_JQ860323 GCTGCTGGTGCGGAAA-----CGTACATGTGCACGGCTTTCGCGCTC-AAATCC-ACTCAA-CCCCTGTGCAC------------------------------CTTATATCCTGTCGAAGCG-AGTAGT--------------------TTGAGACC-----AAAG--G------------------------------------------------------------------------------------------GGTGTCACCCTT--AGTAG--TTCGAGCGAAAGC-TTTGGCTTGTA-TTTAA--CAAACCACTATTATTGTC-TTGGTGAATG---TAATG-----CTCCTTGTGGGCGA--AAAC-AAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATGTTAATCTCAAGCCACTCG--------------------------TTTG-TGGTTTGGACTTGGAGG---TTTGTGCTGGCCC------TGTGGTCGGCTCCTCTGAAATGCATTAGCTGGGCTTTGGCTCGCGTTTGTTGGTGTAATAGTTAATCCTTTCACC---TGAGCGCTTGCCTGATGGGCCT-GCTTCTAATCGTCTGC-TTGGTCGGACAAGGTC Tropicoporus_stratificans_KM199688 GCTGCTGGTGCGGAAA-----CGCGCATGTGCACGGCTTTCGCGCTC-AAATCC-ACTCAA-CCCCTGTGCAC------------------------------CTTTTATCCTGTCGAAGCG-AGTAGT--------------------TTGAGACC-----TTGG--GGAA-------CCTAGT-AGCCAGTA-------GAAGGGGAGGGTAA---------------CAG--CTCCATTCGAAAAGT-------GAAAAGGGGGACCC--GTTAG--CTCGAGCGAAAAC-TTTGGCTTGTA-TTTCA--CAAACCACATTTA-TGTC-CTGT-GAATGTAATAATG-----CTCCTCGTGGGCGA--AAAT-AAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATGTTAATCTCAAATCACTAGTC----TTTTTT-AATCGAAAGGC-TTTTG-TGGTTTGGACTTGGAGG---TTTCTGCTGGCTG--------TGGTCGGCTCCTCTTAAAGGCATTAGCTGGGCTTCGGCTCGCGTTTGTTGGTGTGATAGTTAATTCTTTCGCC---TGAGCGCTTGCCTGATGGGTCC-GCTTCTAATCGTCTGC-CTGGTCGGACAAGGCC Tropicoporus_cubensis_JQ860324 GCTGCTGGCGCGGAAA-----CGCGCATGTGCACGGCTCTCGCGCTC-AAATCC-ACTCAA-CCCCTGTGCAC-----------------------------CCTTCTATCCTGTCGAAGCGAAGTAGT--------------------TCGGGGAT-----CCAT--GGGA-----------------------------------------------------------------CCGTTCGTTAGGC-----------GGCC--------CCTAA--CTCGAGCGAAAGC-TTTGGCTTGTA-TTTAT---AAACCACAGTTGATGTC-TTGT-GAATG---TGATG-----CTCCTAGTGGGCGA--AAAC-AAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATGTTAACCTCAAATCACTCGTC---TTTTTTT-AATCGAAAG---GCTTG-TGGTTTGGACTTGGAGG-CTTTTTTGCTGGCTC--------CGGTCGGCTCCTCTTAAATGCATTAGCTGGGCTTTGGCTCGCGTTCG-TGGTGTAATAGTTAATTCTTTCGCC---TGAGCGCTTGTCGGACTGGCCCKGCTTCTATTCTTCCGC-TTCKTTGGACAAGGTC Tropicoporus_tropicalis_AY599487 GCTGCTGGTGCGGAAA-----CGCGCATGTGCACGGCTTTCGCGCTC--AATCC-ACTCAA-CACCTGTGCAC-------------------------------CTATATCTGGTTGAAGCG-AGTAGT--------------------TCGGGCTC-----CTGT--AGG--------CGGAGT-AATGAGTA-------GAAAGGAGGCACAG-------------------TCTTCCGTTTGAAAGT-------GAAATGT---------CTCGG--CTCGAGTGAAAGC-TTCGACTTGTT-CTCAT---AAACCACACTTGTTGTC-TTGT-GAATG---TAATG-----CTCCCTGTGAGCGA-TAATT-AAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATGTTAATCTCAAATCACTTGTC----TTTCTT-AACTGAAGG---GCCTG-AGGTTTGGACTTGGGGG---TTTTTGCTGGCTC--------CGGTCGGCTCCTCTCAAATGTATTAGCTGGGCTTTGGCTTGCGTTTA-CGGTGTAATAGTTAATCCTTTCGCC---AGAACGCTTGCCTAATAGGTCT-GCTTCTAATCGTCCGT-T---TCGGACAAGGCT Tropicoporus_excentrodendri_KP030791 GTTGCTGGCGTGGAAT-----CGCGCAAGTGCACGGCTTTCGCGCTC-AAATCC-ATTCAAACCCATGTGCAC------------------------------CCTTTATCTTGTCGAAACG-AGTAGT--------------------TTGGGCTT-----TCGG--GAT--------GGTAGT-AGTCAGTA-------AGAGGGGAGGATGC---------------AACTGTCTCCTTTCGAAGAC-------GAAAAGT---------CCTGT--ACCGAACGAAAGT-TTTGGCTTGCA-TTTAT---AAATCACATTTGTTGTC-TTGT-GAACG---TGATG-----CTCCTTGTGGGCAAAAAAAT-ATGTACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATGTTAATCTCAAATCACTGGTC----TTTCTT-AATTGAGAG---GTCTG-GGATTTGGACATGGAGG--GTTTCTGCTGGCTC--------GGGTCGGCTCCTCTCAAATGCATTAGCTGGGCTTCGGCTCGCGTTTA-TGGTGTAATAGTTAATTCTCTCACC---GGAGCGCTTGCCTAACGGGTCC-GCTTCTAATCGTCTGC-CTAGTCGGACAAGGCC Tropicoporus_rudis_KP030797 GCTGCTGGCGCGGAAA-----CGCGCATGTGCACGGCCTTCGCGCTC-AAATCC-ACTCAACCCCCTGTGCAC-------------------------------CTTTATCCTGTCGGAGCG-AGTAGC--------------------TTGAGACC-----TTTT--TGGGA------CGTAGT-AGCCGGTA--ATAGTAGAAAGGAGGGTAA---------------CAG--CTCCATTCGAAAGGC-------GAAAAGGC--------CCTAA--CTCGAGCGAAAAC-TTTGGCTTGTATTTTAT---AAACCACATTTGTTGTC-CTGT-GAATGT--TAATG-----CTCCTTGTGGGCGA--GAAT-AAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATGTTAACCTCAAATCACACTTG----TCTTTT------GGGG---CTTTG-TGGTTTGGACCTGGAGG---TTTCTGCTGGCCC------TGCGGTCGGCTCCTCTTAAATGCATTAGCTGGGTTTCGGCTCGCGTTTG-TGGTGTAATAGTTAATTCTTTCGCC---TGAGCGCTTGCCTGATGGGCCC-GCTTCTAATTGTCTGC-TTGGTCGGACAAGGTC Tropicoporus_linteus_JQ860322 GCTGCTGGTGCGGAAA-----CGTACATGTGCACGGCTTTCGCGCTC-AAATCC-ACTCAA-CCCCTGTGCAC------------------------------CTTATATCCTGTCGAAGCG-AGTAGT--------------------TTGAGATC-----AAAG--G----------------------------------------------------------------------------------------GTGTGGTCACCCTT--AGTAG--CTCGAGCGAAAGC-TTTGGCTTGTA-TTTAA--CAAACCACTATTATTGTC-TTGT-GAATGG--TAATG-----CTCCTTGTGGGCGA--AAAT-AAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATGTTAATCTCAAACCACTCG-------------------------TTTTG-TGGTTTGGACTTGGAGG---TTTCTGCTGGCCCCT---GCGGGGTCGGCTCCTCTGAAATGCATTAGCTGGGCTTCGGCTCGCGTTTGTTGGTGTAATAGTTAATCGTTTCACC---TGAGCGCTTGCCTGATGGGCCT-GCTTCTAATCGTCTGC-TTGGTCGGACAAGGTC Tropicoporus_tropicalis_KF695121 GCTGCTGGTGCGGAAA-----CGCGCATGTGCACGGCTTTCGCGCTC-AAATCC-ACTCAA-CACCTGTGCAC-------------------------------CTATATCTGGTTGAAGCG-AGTAGT--------------------TCGGGCTC-----CTGT--AGG--------CGGAGT-AATGAGTA-------GAAAGGAGGCACAG-------------------TCTTCCGTTTGAAAGT-------GAAATGT---------CTCGG--CTCGAGTGAAAGC-TTCGACTTGTT-TTTAT---AAACCACACTTGTTGTC-TTGT-GAATG---TAATG-----CTCCCTGTGAGCGA-TAATT-AAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATGTTAATCTCAAATCACTTGTC----TTTCTT-AATTGAAGG---GCCTG-AGGTTTGGACTTGGAGG--ATTCTTGCTGGCTC--------CGGTCGGCTCCTCTCAAATGTATTAGCTGGGCTTCGGCTTGCGTTTA-CGGTGTAATAGTTAATCCTTTCGCC---AGAACGCTTGCCTAATAGGTCT-GCTTCTAATCGTCCGT-T---TCGGACAAGGCT Sanghuangporus_baumii_JN642565 GTTGCTGGCGCGGGAAATTCTCGCGCATGTGCACGGCCTTCGCGCTC-AAATCCAACTCAA-CCCCTGTGCACCTTT-------------------------ATATATCGCGAGTCGAAGTT-AGTAAT--------------------CTGAGGTT-----CTTG--CA------------AGT-AATCGGTA-------GGAAGGCGAAAGCGAGAGTCTTGCTCGT-TAG-GTAACCTTTCGAAAAT-------GAAAGCG---------GGTGC--GTCGGGTGAAGGC-TTCGGCTCGTT-GTTATTACAAACACCTTATATTGTCTTTGT-GAATG---TAATG-----CTCCTCGTGGGCGA--AAAG-AAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGRACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATGTTAATCTCAAACCACTCGTC----TTTCTT-AATCGAAGG---GCTTGCAGGTTTGGACTTGGAGG--GTTACTGCTGGCGCCTCTCGAGGGGTCGGCTCCTCTTAAATATATTAGCTGGGCTTTGGCTCGCGTTTA-CGGTGTAATAGTTGATTCCATTCACCAACGAGCGCTTGCCTGAAGGGCCT-GCTTCTAGCCGTCCGC-GTCGTCGGACAAGGRG Tropicoporus_stratificans_KM199689 GCTGCTGGTGCGGAAA-----CGCGCATGTGCACGGCTTTCGCGCTC-AAATCC-ACTCAA-CCCCTGTGCAC------------------------------CTTTTATCCTGTCGAAGCG-AGTAGT--------------------TTGAGACC-----TCGG--GGGA-------CTTAGTAAGTCAGTA-------GAAGGGGAGGGTAA---------------CAG--CTCCATTCGAAAAGT-------GAAAAGG----CCC--CTTAG--CTCGAGCGAAAGCTTTTGACTTGTA-TTTCA--CAAACCACGTTTA-TGTC-CTGT-GAATG---TAATG-----CTCCTTGTGGGCGA--AAAT-AAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAACGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATGTTAATCTCAAATCACTAGTC----TTTTTT-AATCGAAAGGCTTTTTG-TGGTTTGGACTTGGAGG---TTTCTGCTGGCTG--------CGGTCGGCTCCTCTTAAAAGCATTAGCTGGGCTTCGGCTCGCGTTTG-TGGTGTGATAGTTAATTCTTTCGCC---TGAGCGCTTGCCTGATGGGTCC-GCTTCTAACCGTCTGC-TTGGTCGGACAAGGCC Tropicoporus_pseudolinteus_KC778781 GTTGCTGGTGCGGAAA-----CGCGCATGTGCACGGCTTTCGCGCTC-AAATCC-ACTCAA-CCCCTGTGCAC-------------------------------CTTTATCCTGTCGAAGCG-AGTAGT--------------------TTGGGACC-----TTTG--AGGACGCGTGTAGCAGT-AGCCGGCCAAGTAG-AAGGGGGAGGGTAA---------------CAGCTCTCCATTCGAAAGGC-------GAAGCGTCGTCTCTCGTCTAG--CTCGGGCGAAAGC-TTTGGCTTGTA-TTTAA---AAACCACATTTGTTGTC-TTGT-GAATGC--AAACG-----CTCCTCGTGGGCGA--AAAT-AAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATGTTAATCTCAAATCACTTGTC----TTTTTTAAATCGAAAG---GCTCG-TGGTTTGGACTTGGAGG---TTTATGCCGGCTC--------CGGTCGGCTCCTCTTAAATGCATTAGCTGGGCTGTGGCTCGCGTTTG-TGGTGTGATAGTTAAGTCTTTCGCC---TGAGCGCTTGCCTGAGGGGTCC-GCTTCTAATCGTCTGC-TTGGTCGGACAAGGCC Tropicoporus_dependens_KC778778 GCTGCTGGCGCGGAAA-----CGCGCATGTGCACGGCTTTTGCGCTC-AAATCC-ACTCAACCCCCTGTGTGC---------------------------ACCTCTCTATCTTGTCGAAGCG-AGTAGT--------------------TTGGGACCGGACCCCAT--GGGGG------ACGGCT-AGCCGGTA-------GAAAGGGAGGGTAA---------------CAG--CTCCATTCGAAAGGC---GGGGGAAGAGCC--------CCTAACTCTCGAGCGAAAGC-TTTGGCTTGTA-TTCAT---AAATCACAGTTGATGTC-TTGT-GAATG---TGATG-----CTCCTTGTGGGCGA--AAATGAAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATGTTAATCTCAAATCGCTCGTC----TTTTTT-AATCGAAAG---GCTTG-CGGTTTGGACTTGGAGG---TTTTTGCTGGCTC--------TGGTTGGCTCCTCTTAAATGCATTAGCTGGGCTTTGGCTCGCGTTCG-TGGTGTAATAGTTAATTCTTTCGCC---TGAGCGCCTGTCTGACGGGTCC-GCTTCCAATCGTCCGC-TTAGTCGGACAG-GCC Tropicoporus_tropicalis_AY641432 GCTGCTGGTGCGGAAA-----CGCGCATGTGCACGGCTTTCGCGCTC--AATCC-ACTCAA-CACCTGTGCAC-------------------------------CTATATCTGGTTGAAGCG-AGTAGT--------------------TCGGGCTC-----CTGT--AGG--------CGGAGT-AATGAGTA-------GAAAGGAGGCACAG-------------------TCTTCCGTTTGAAAGT-------GAAATGT---------CTCGG--CTCGAGTGAAAGC-TTCGACTTGTT-CTCAT---AAACCACACTTGTTGTC-TTGT-GAATG---TAATG-----CTCCCTGTGAGCGA-TAATT-AAATACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATCTTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTTGAGTGTCATGTTAATCTCAAATCACTTGTC----TTTCTT-AACTGAAGG---GCCTG-AGGTTTGGACTTGGGGG---TTTTTGCTGGCTC--------CGGTCGGCTCCTCTCAAATGTATTAGCTGGGCTTTGGCTTGCGTTTA-CGGTGTAATAGTTAATCCTTTCGCC---AGAACGCTTGCCTAATAGGTCT-GCTTCTAATCGTCCGT-T---TCGGACAAGGCT ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 760; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 760; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 760; END; BEGIN TREES; Title 'Trees from "TropicoporusBI.tre"'; LINK Taxa = Taxa_for_Tropicoporus_phylogeny; TRANSLATE 1 Mensularia_radiata_KC414257, 2 Tropicoporus_guanacastensis_KP030792, 3 Tropicoporus_linteus_JQ860321, 4 Tropicoporus_pseudolinteus_AF534075, 5 Sanghuangporus_sanghuang_JN794061, 6 Tropicoporus_cubensis_JQ860325, 7 Tropicoporus_rudis_KP030796, 8 Tropicoporus_sideroxylicola_KC778782, 9 Tropicoporus_dependens_KC778779, 10 Tropicoporus_guanacastensis_KP030794, 11 Tropicoporus_linteus_JQ860323, 12 Tropicoporus_stratificans_KM199688, 13 Tropicoporus_cubensis_JQ860324, 14 Tropicoporus_tropicalis_AY599487, 15 Tropicoporus_excentrodendri_KP030791, 16 Tropicoporus_rudis_KP030797, 17 Tropicoporus_linteus_JQ860322, 18 Tropicoporus_tropicalis_KF695121, 19 Sanghuangporus_baumii_JN642565, 20 Tropicoporus_stratificans_KM199689, 21 Tropicoporus_pseudolinteus_KC778781, 22 Tropicoporus_dependens_KC778778, 23 Tropicoporus_tropicalis_AY641432; TREE BI_con50majrule = (1:0.1429133947768514,(5:0.0316025419579768,19:0.02346597541726564):0.07263145425884948,((((((2:0.002367613573005879,10:0.00225870157518272):0.006265967976339892,(9:9.764005493626082E-4,22:0.002257556185282717):0.01380640403348702):0.01715116940105133,(6:0.003765091220289346,13:0.006327015642663871):0.03158897936136181):0.03308268435829446,(((3:0.001148657613013458,17:0.001512396772915975):0.009573424480721982,11:0.01419542047254131):0.04993502327159397,((7:9.832791546546646E-4,16:9.683073601471863E-4):0.04452402737648811,8:0.0595375981593499):0.008514152125636424,(12:0.01197537541591145,20:0.01122810623545502):0.02427253224658933):0.01040279094805022,(4:0.00300432367574358,21:0.001407798960479693):0.04468984329841184):0.0402188284920204,15:0.08432853399064033):0.02525981707637517,((14:9.870295428683737E-4,23:0.001029980531365387):0.008208293237446119,18:0.002282437898104341):0.06755412136420666):0.05954641458179719); END; BEGIN TREES; Title 'Trees from "TropicoporusML.tre"'; LINK Taxa = Taxa_for_Tropicoporus_phylogeny; TRANSLATE 1 Mensularia_radiata_KC414257, 2 Tropicoporus_guanacastensis_KP030792, 3 Tropicoporus_linteus_JQ860321, 4 Tropicoporus_pseudolinteus_AF534075, 5 Sanghuangporus_sanghuang_JN794061, 6 Tropicoporus_cubensis_JQ860325, 7 Tropicoporus_rudis_KP030796, 8 Tropicoporus_sideroxylicola_KC778782, 9 Tropicoporus_dependens_KC778779, 10 Tropicoporus_guanacastensis_KP030794, 11 Tropicoporus_linteus_JQ860323, 12 Tropicoporus_stratificans_KM199688, 13 Tropicoporus_cubensis_JQ860324, 14 Tropicoporus_tropicalis_AY599487, 15 Tropicoporus_excentrodendri_KP030791, 16 Tropicoporus_rudis_KP030797, 17 Tropicoporus_linteus_JQ860322, 18 Tropicoporus_tropicalis_KF695121, 19 Sanghuangporus_baumii_JN642565, 20 Tropicoporus_stratificans_KM199689, 21 Tropicoporus_pseudolinteus_KC778781, 22 Tropicoporus_dependens_KC778778, 23 Tropicoporus_tropicalis_AY641432; TREE ML_tree = (5:0.04612907,19:0.0292581,(1:0.29021174,((18:3.5E-7,(14:1.0E-8,23:1.0E-8):0.01186632):0.11401895,(15:0.13721945,(((11:0.01887966,(3:1.6E-7,17:1.3E-7):0.01284357):0.07856602,((12:0.01469386,20:0.01425226):0.03599751,(8:0.08880252,(7:1.0E-8,16:9.0E-8):0.06198716):0.00872381):0.00579955):0.01162377,((4:0.0036444,21:1.6E-7):0.06462442,(((9:1.0E-8,22:0.00180695):0.01903014,(2:0.00182979,10:0.00180584):0.00557541):0.022501,(6:0.00361558,13:0.00756142):0.04652269):0.04874858):4.17E-6):0.05902251):0.02546268):0.10910068):0.12822368); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1437639793551; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1258387309662631538; tell It; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 3562778178817431753; mqVersion 275; checksumv 0 3 3326771107 null getNumChars 760 numChars 760 getNumTaxa 23 numTaxa 23 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 330230.0 sumSquares -7.839866231326541E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 351; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1366 629; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #1258387309662631538 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #1258387309662631538; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; getTable; tell It; rowNamesWidth 361; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1015 562; setLocation -9 0; setFont SanSerif; setFontSize 18; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; showTrees 0 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 1; getWindow; tell It; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1015 562; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TreesList.TreesListWindow.ibeam; endTell; endTell; showWindow; endTell; showTrees 1 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 2; getWindow; tell It; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1015 562; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #1258387309662631538 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 831.1437638929361.3276515804700312806; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1015 562; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientRight; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(1:0.1429133947768514,(5:0.0316025419579768,19:0.02346597541726564):0.07263145425884948,((((((2:0.002367613573005879,10:0.00225870157518272):0.006265967976339892,(9:9.764005493626082E-4,22:0.002257556185282717):0.01380640403348702):0.01715116940105133,(6:0.003765091220289346,13:0.006327015642663871):0.03158897936136181):0.03308268435829446,(((3:0.001148657613013458,17:0.001512396772915975):0.009573424480721982,11:0.01419542047254131):0.04993502327159397,((7:9.832791546546646E-4,16:9.683073601471863E-4):0.04452402737648811,8:0.0595375981593499):0.008514152125636424,(12:0.01197537541591145,20:0.01122810623545502):0.02427253224658933):0.01040279094805022,(4:0.00300432367574358,21:0.001407798960479693):0.04468984329841184):0.0402188284920204,15:0.08432853399064033):0.02525981707637517,((14:9.870295428683737E-4,23:0.001029980531365387):0.008208293237446119,18:0.002282437898104341):0.06755412136420666):0.05954641458179719);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; makeTreeWindow #1258387309662631538 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlockInt 1; toggleUseWeights off; endTell; setAssignedID 981.1437639166326.2627804420617109386; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1015 562; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientRight; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(5:0.04612907,19:0.0292581,(1:0.29021174,((18:3.5E-7,(14:1.0E-8,23:1.0E-8):0.01186632):0.11401895,(15:0.13721945,(((11:0.01887966,(3:1.6E-7,17:1.3E-7):0.01284357):0.07856602,((12:0.01469386,20:0.01425226):0.03599751,(8:0.08880252,(7:1.0E-8,16:9.0E-8):0.06198716):0.00872381):0.00579955):0.01162377,((4:0.0036444,21:1.6E-7):0.06462442,(((9:1.0E-8,22:0.00180695):0.01903014,(2:0.00182979,10:0.00180584):0.00557541):0.022501,(6:0.00361558,13:0.00756142):0.04652269):0.04874858):4.17E-6):0.05902251):0.02546268):0.10910068):0.12822368);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #3562778178817431753 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 359; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1015 562; setLocation -9 0; setFont SanSerif; setFontSize 18; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;