#NEXUS [ ============= Summary Trees ============= Summary trees generated by SumTrees. Summarization Information ------------------------- Trees read from 100 source(s): - 'BS/garli_5.run1.boot.tre' - 'BS/garli_5.run10.boot.tre' - 'BS/garli_5.run100.boot.tre' - 'BS/garli_5.run11.boot.tre' - 'BS/garli_5.run12.boot.tre' - 'BS/garli_5.run13.boot.tre' - 'BS/garli_5.run14.boot.tre' - 'BS/garli_5.run15.boot.tre' - 'BS/garli_5.run16.boot.tre' - 'BS/garli_5.run17.boot.tre' - 'BS/garli_5.run18.boot.tre' - 'BS/garli_5.run19.boot.tre' - 'BS/garli_5.run2.boot.tre' - 'BS/garli_5.run20.boot.tre' - 'BS/garli_5.run21.boot.tre' - 'BS/garli_5.run22.boot.tre' - 'BS/garli_5.run23.boot.tre' - 'BS/garli_5.run24.boot.tre' - 'BS/garli_5.run25.boot.tre' - 'BS/garli_5.run26.boot.tre' - 'BS/garli_5.run27.boot.tre' - 'BS/garli_5.run28.boot.tre' - 'BS/garli_5.run29.boot.tre' - 'BS/garli_5.run3.boot.tre' - 'BS/garli_5.run30.boot.tre' - 'BS/garli_5.run31.boot.tre' - 'BS/garli_5.run32.boot.tre' - 'BS/garli_5.run33.boot.tre' - 'BS/garli_5.run34.boot.tre' - 'BS/garli_5.run35.boot.tre' - 'BS/garli_5.run36.boot.tre' - 'BS/garli_5.run37.boot.tre' - 'BS/garli_5.run38.boot.tre' - 'BS/garli_5.run39.boot.tre' - 'BS/garli_5.run4.boot.tre' - 'BS/garli_5.run40.boot.tre' - 'BS/garli_5.run41.boot.tre' - 'BS/garli_5.run42.boot.tre' - 'BS/garli_5.run43.boot.tre' - 'BS/garli_5.run44.boot.tre' - 'BS/garli_5.run45.boot.tre' - 'BS/garli_5.run46.boot.tre' - 'BS/garli_5.run47.boot.tre' - 'BS/garli_5.run48.boot.tre' - 'BS/garli_5.run49.boot.tre' - 'BS/garli_5.run5.boot.tre' - 'BS/garli_5.run50.boot.tre' - 'BS/garli_5.run51.boot.tre' - 'BS/garli_5.run52.boot.tre' - 'BS/garli_5.run53.boot.tre' - 'BS/garli_5.run54.boot.tre' - 'BS/garli_5.run55.boot.tre' - 'BS/garli_5.run56.boot.tre' - 'BS/garli_5.run57.boot.tre' - 'BS/garli_5.run58.boot.tre' - 'BS/garli_5.run59.boot.tre' - 'BS/garli_5.run6.boot.tre' - 'BS/garli_5.run60.boot.tre' - 'BS/garli_5.run61.boot.tre' - 'BS/garli_5.run62.boot.tre' - 'BS/garli_5.run63.boot.tre' - 'BS/garli_5.run64.boot.tre' - 'BS/garli_5.run65.boot.tre' - 'BS/garli_5.run66.boot.tre' - 'BS/garli_5.run67.boot.tre' - 'BS/garli_5.run68.boot.tre' - 'BS/garli_5.run69.boot.tre' - 'BS/garli_5.run7.boot.tre' - 'BS/garli_5.run70.boot.tre' - 'BS/garli_5.run71.boot.tre' - 'BS/garli_5.run72.boot.tre' - 'BS/garli_5.run73.boot.tre' - 'BS/garli_5.run74.boot.tre' - 'BS/garli_5.run75.boot.tre' - 'BS/garli_5.run76.boot.tre' - 'BS/garli_5.run77.boot.tre' - 'BS/garli_5.run78.boot.tre' - 'BS/garli_5.run79.boot.tre' - 'BS/garli_5.run8.boot.tre' - 'BS/garli_5.run80.boot.tre' - 'BS/garli_5.run81.boot.tre' - 'BS/garli_5.run82.boot.tre' - 'BS/garli_5.run83.boot.tre' - 'BS/garli_5.run84.boot.tre' - 'BS/garli_5.run85.boot.tre' - 'BS/garli_5.run86.boot.tre' - 'BS/garli_5.run87.boot.tre' - 'BS/garli_5.run88.boot.tre' - 'BS/garli_5.run89.boot.tre' - 'BS/garli_5.run9.boot.tre' - 'BS/garli_5.run90.boot.tre' - 'BS/garli_5.run91.boot.tre' - 'BS/garli_5.run92.boot.tre' - 'BS/garli_5.run93.boot.tre' - 'BS/garli_5.run94.boot.tre' - 'BS/garli_5.run95.boot.tre' - 'BS/garli_5.run96.boot.tre' - 'BS/garli_5.run97.boot.tre' - 'BS/garli_5.run98.boot.tre' - 'BS/garli_5.run99.boot.tre' Total of 100 trees analyzed for summarization: - All trees were treated as unweighted - All trees were unrooted - 36 unique taxa across all trees - 132 unique splits out of a total of 6998 splits - 95 unique non-trivial splits counted out of a total of non-trivial 3298 splits Summarizing onto target tree defined in 'garli_5.run92.best.tre': - Support values expressed as proportions or probabilities - Edge lengths as given on target trees - Support and other summarization annotations added to target trees as metadata Program Information ------------------- SumTrees 4.0.0 (Jan 31 2015) by Jeet Sukumaran and Mark T. Holder Using None, located at: '/Library/Python/2.7/site-packages/dendropy' Running under Python 2.7.10 (default, Aug 22 2015, 20:33:39) (GCC 4.2.1 Compatible Apple LLVM 7.0.0 (clang-700.0.59.1)), located at: '/usr/bin/python' Execution Information --------------------- Executed on Noors-MBP.us.sinet.si.edu by NDW@Noors-MBP.us.sinet.si.edu Working directory: '/Users/NDW/Documents/Research/4Gene/Manuscript/FINAL_RESULTS/Partition_Finder_NumberParams/5_NucMito/GARLI' Started at: 2015-11-16 10:46:24.678027 Ended at: 2015-11-16 10:46:25.987744 Total elapsed time: 1.309717 seconds Actual analysis time: 1.219669 seconds Citation Information -------------------- Sukumaran, J and MT Holder. 2010. DendroPy: a Python library for phylogenetic computing. Bioinformatics 26: 1569-1571. Sukumaran, J and MT Holder. SumTrees: Phylogenetic Tree Summarization. 4.0.0 (Jan 31 2015). Available at https://github.com/jeetsukumaran/DendroPy. ] BEGIN TAXA; DIMENSIONS NTAX=36; TAXLABELS Aegotheles_insignis Batrachostomus_septimus Caprimulgus_manillensis Caprimulgus_a_affinis Hydropsalis_anthonyi Antrostomus_carolinensis Gactornis_enarratus Caprimulgus_e_europaeus Caprimulgus_macrurus Hydropsalis_maculicaudus Hydropsalis_nigrescens Hydropsalis_parvulus1 Hydropsalis_parvulus2 Antrostomus_ridgwayi Antrostomus_v_vociferus Hydropsalis_whitelyi Chordeiles_acutipennis Chordeiles_pusillus Hydropsalis_anomalus Eurostopodus_argus Lyncornis_m_macrotis Hydropsalis_climacocerca Hydropsalis_rufiventris Caprimulgus_vexillarius Nyctibius_grandis Hydropsalis_albicollis Nyctiphrynus_ocellatus Hydropsalis_leucopyga Nyctiphrynus_mcleodii Antrostomus_nuttallii Chordeiles_nacunda Podargus_strigoides Caprimulgus_climacurus Siphonorhis_brewsteri Steatornis_caripensis Hydropsalis_segmentata ; END; BEGIN TREES; TREE 5_PartFinder = [&U] [!GarliScore -36642.517570][!GarliModel S 0.291758 0.077958 0.498677 12.915470 0.417747 M1 r 1.84618 6.93478 0.52918 1.37570 12.72052 1.00000 e 0.29054 0.23008 0.26838 0.21100 a 0.78517 p 0.41175 M2 r 1.90648 6.81566 0.51126 2.31054 6.81566 1.00000 e 0.34932 0.19719 0.21696 0.23653 a 0.75643 p 0.72827 M3 r 2.45099 20.48200 2.78267 1.05016 20.48200 1.00000 e 0.24098 0.31154 0.16453 0.28296 a 0.27977 p 0.49351 M4 r 1.00000 269.74896 18.86936 18.86936 292.32336 1.00000 e 0.36060 0.46764 0.02886 0.14290 a 1.76702 p 0.00739 M5 r 0.94289 4.02123 0.53413 0.95459 4.02123 1.00000 e 0.25000 0.25000 0.25000 0.25000 a 0.69345 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