#NEXUS [ ============= Summary Trees ============= Summary trees generated by SumTrees. Summarization Information ------------------------- Trees read from 100 source(s): - 'BS/garli_3.run1.boot.tre' - 'BS/garli_3.run10.boot.tre' - 'BS/garli_3.run100.boot.tre' - 'BS/garli_3.run11.boot.tre' - 'BS/garli_3.run12.boot.tre' - 'BS/garli_3.run13.boot.tre' - 'BS/garli_3.run14.boot.tre' - 'BS/garli_3.run15.boot.tre' - 'BS/garli_3.run16.boot.tre' - 'BS/garli_3.run17.boot.tre' - 'BS/garli_3.run18.boot.tre' - 'BS/garli_3.run19.boot.tre' - 'BS/garli_3.run2.boot.tre' - 'BS/garli_3.run20.boot.tre' - 'BS/garli_3.run21.boot.tre' - 'BS/garli_3.run22.boot.tre' - 'BS/garli_3.run23.boot.tre' - 'BS/garli_3.run24.boot.tre' - 'BS/garli_3.run25.boot.tre' - 'BS/garli_3.run26.boot.tre' - 'BS/garli_3.run27.boot.tre' - 'BS/garli_3.run28.boot.tre' - 'BS/garli_3.run29.boot.tre' - 'BS/garli_3.run3.boot.tre' - 'BS/garli_3.run30.boot.tre' - 'BS/garli_3.run31.boot.tre' - 'BS/garli_3.run32.boot.tre' - 'BS/garli_3.run33.boot.tre' - 'BS/garli_3.run34.boot.tre' - 'BS/garli_3.run35.boot.tre' - 'BS/garli_3.run36.boot.tre' - 'BS/garli_3.run37.boot.tre' - 'BS/garli_3.run38.boot.tre' - 'BS/garli_3.run39.boot.tre' - 'BS/garli_3.run4.boot.tre' - 'BS/garli_3.run40.boot.tre' - 'BS/garli_3.run41.boot.tre' - 'BS/garli_3.run42.boot.tre' - 'BS/garli_3.run43.boot.tre' - 'BS/garli_3.run44.boot.tre' - 'BS/garli_3.run45.boot.tre' - 'BS/garli_3.run46.boot.tre' - 'BS/garli_3.run47.boot.tre' - 'BS/garli_3.run48.boot.tre' - 'BS/garli_3.run49.boot.tre' - 'BS/garli_3.run5.boot.tre' - 'BS/garli_3.run50.boot.tre' - 'BS/garli_3.run51.boot.tre' - 'BS/garli_3.run52.boot.tre' - 'BS/garli_3.run53.boot.tre' - 'BS/garli_3.run54.boot.tre' - 'BS/garli_3.run55.boot.tre' - 'BS/garli_3.run56.boot.tre' - 'BS/garli_3.run57.boot.tre' - 'BS/garli_3.run58.boot.tre' - 'BS/garli_3.run59.boot.tre' - 'BS/garli_3.run6.boot.tre' - 'BS/garli_3.run60.boot.tre' - 'BS/garli_3.run61.boot.tre' - 'BS/garli_3.run62.boot.tre' - 'BS/garli_3.run63.boot.tre' - 'BS/garli_3.run64.boot.tre' - 'BS/garli_3.run65.boot.tre' - 'BS/garli_3.run66.boot.tre' - 'BS/garli_3.run67.boot.tre' - 'BS/garli_3.run68.boot.tre' - 'BS/garli_3.run69.boot.tre' - 'BS/garli_3.run7.boot.tre' - 'BS/garli_3.run70.boot.tre' - 'BS/garli_3.run71.boot.tre' - 'BS/garli_3.run72.boot.tre' - 'BS/garli_3.run73.boot.tre' - 'BS/garli_3.run74.boot.tre' - 'BS/garli_3.run75.boot.tre' - 'BS/garli_3.run76.boot.tre' - 'BS/garli_3.run77.boot.tre' - 'BS/garli_3.run78.boot.tre' - 'BS/garli_3.run79.boot.tre' - 'BS/garli_3.run8.boot.tre' - 'BS/garli_3.run80.boot.tre' - 'BS/garli_3.run81.boot.tre' - 'BS/garli_3.run82.boot.tre' - 'BS/garli_3.run83.boot.tre' - 'BS/garli_3.run84.boot.tre' - 'BS/garli_3.run85.boot.tre' - 'BS/garli_3.run86.boot.tre' - 'BS/garli_3.run87.boot.tre' - 'BS/garli_3.run88.boot.tre' - 'BS/garli_3.run89.boot.tre' - 'BS/garli_3.run9.boot.tre' - 'BS/garli_3.run90.boot.tre' - 'BS/garli_3.run91.boot.tre' - 'BS/garli_3.run92.boot.tre' - 'BS/garli_3.run93.boot.tre' - 'BS/garli_3.run94.boot.tre' - 'BS/garli_3.run95.boot.tre' - 'BS/garli_3.run96.boot.tre' - 'BS/garli_3.run97.boot.tre' - 'BS/garli_3.run98.boot.tre' - 'BS/garli_3.run99.boot.tre' Total of 100 trees analyzed for summarization: - All trees were treated as unweighted - All trees were unrooted - 36 unique taxa across all trees - 127 unique splits out of a total of 6997 splits - 90 unique non-trivial splits counted out of a total of non-trivial 3297 splits Summarizing onto target tree defined in 'garli_3.run59.best.tre': - Support values expressed as proportions or probabilities - Edge lengths as given on target trees - Support and other summarization annotations added to target trees as metadata Program Information ------------------- SumTrees 4.0.0 (Jan 31 2015) by Jeet Sukumaran and Mark T. Holder Using None, located at: '/Library/Python/2.7/site-packages/dendropy' Running under Python 2.7.10 (default, Aug 22 2015, 20:33:39) (GCC 4.2.1 Compatible Apple LLVM 7.0.0 (clang-700.0.59.1)), located at: '/usr/bin/python' Execution Information --------------------- Executed on Noors-MBP.us.sinet.si.edu by NDW@Noors-MBP.us.sinet.si.edu Working directory: '/Users/NDW/Documents/Research/4Gene/Manuscript/FINAL_RESULTS/Partition_Finder_NumberParams/3_By_Gene/GARLI' Started at: 2015-11-16 10:45:51.801605 Ended at: 2015-11-16 10:45:53.154992 Total elapsed time: 1.353387 seconds Actual analysis time: 1.258462 seconds Citation Information -------------------- Sukumaran, J and MT Holder. 2010. DendroPy: a Python library for phylogenetic computing. Bioinformatics 26: 1569-1571. Sukumaran, J and MT Holder. SumTrees: Phylogenetic Tree Summarization. 4.0.0 (Jan 31 2015). Available at https://github.com/jeetsukumaran/DendroPy. ] BEGIN TAXA; DIMENSIONS NTAX=36; TAXLABELS Aegotheles_insignis Batrachostomus_septimus Caprimulgus_manillensis Caprimulgus_a_affinis Hydropsalis_anthonyi Antrostomus_carolinensis Gactornis_enarratus Caprimulgus_e_europaeus Caprimulgus_macrurus Hydropsalis_maculicaudus Hydropsalis_nigrescens Hydropsalis_parvulus1 Hydropsalis_parvulus2 Antrostomus_ridgwayi Antrostomus_v_vociferus Hydropsalis_whitelyi Chordeiles_acutipennis Chordeiles_pusillus Hydropsalis_anomalus Eurostopodus_argus Lyncornis_m_macrotis Hydropsalis_climacocerca Hydropsalis_rufiventris Caprimulgus_vexillarius Nyctibius_grandis Hydropsalis_albicollis Nyctiphrynus_ocellatus Hydropsalis_leucopyga Nyctiphrynus_mcleodii Antrostomus_nuttallii Chordeiles_nacunda Podargus_strigoides Caprimulgus_climacurus Siphonorhis_brewsteri Steatornis_caripensis Hydropsalis_segmentata ; END; BEGIN TREES; TREE 3_PartFinder = [&U] [!GarliScore -37362.407906][!GarliModel S 0.246385 4.470961 0.529358 0.250681 M1 r 0.61266 3.99994 0.31454 0.61558 3.99994 1.00000 e 0.31388 0.20511 0.21414 0.26687 a 0.78249 p 0.50179 M2 r 0.46841 8.81952 2.03210 0.27072 34.25339 1.00000 e 0.32363 0.43751 0.08227 0.15658 a 0.49938 p 0.42412 M3 r 1.15680 4.23439 0.59162 1.19448 5.30258 1.00000 e 0.25000 0.25000 0.25000 0.25000 a 0.85549 M4 r 1.98798 6.61202 0.51524 1.70731 11.13152 1.00000 e 0.29789 0.21711 0.25765 0.22735 a 0.77648 p 0.47515 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