#NEXUS [ ============= Summary Trees ============= Summary trees generated by SumTrees. Summarization Information ------------------------- Trees read from 100 source(s): - 'BS/garli_cmyc.run1.boot.tre' - 'BS/garli_cmyc.run10.boot.tre' - 'BS/garli_cmyc.run100.boot.tre' - 'BS/garli_cmyc.run11.boot.tre' - 'BS/garli_cmyc.run12.boot.tre' - 'BS/garli_cmyc.run13.boot.tre' - 'BS/garli_cmyc.run14.boot.tre' - 'BS/garli_cmyc.run15.boot.tre' - 'BS/garli_cmyc.run16.boot.tre' - 'BS/garli_cmyc.run17.boot.tre' - 'BS/garli_cmyc.run18.boot.tre' - 'BS/garli_cmyc.run19.boot.tre' - 'BS/garli_cmyc.run2.boot.tre' - 'BS/garli_cmyc.run20.boot.tre' - 'BS/garli_cmyc.run21.boot.tre' - 'BS/garli_cmyc.run22.boot.tre' - 'BS/garli_cmyc.run23.boot.tre' - 'BS/garli_cmyc.run24.boot.tre' - 'BS/garli_cmyc.run25.boot.tre' - 'BS/garli_cmyc.run26.boot.tre' - 'BS/garli_cmyc.run27.boot.tre' - 'BS/garli_cmyc.run28.boot.tre' - 'BS/garli_cmyc.run29.boot.tre' - 'BS/garli_cmyc.run3.boot.tre' - 'BS/garli_cmyc.run30.boot.tre' - 'BS/garli_cmyc.run31.boot.tre' - 'BS/garli_cmyc.run32.boot.tre' - 'BS/garli_cmyc.run33.boot.tre' - 'BS/garli_cmyc.run34.boot.tre' - 'BS/garli_cmyc.run35.boot.tre' - 'BS/garli_cmyc.run36.boot.tre' - 'BS/garli_cmyc.run37.boot.tre' - 'BS/garli_cmyc.run38.boot.tre' - 'BS/garli_cmyc.run39.boot.tre' - 'BS/garli_cmyc.run4.boot.tre' - 'BS/garli_cmyc.run40.boot.tre' - 'BS/garli_cmyc.run41.boot.tre' - 'BS/garli_cmyc.run42.boot.tre' - 'BS/garli_cmyc.run43.boot.tre' - 'BS/garli_cmyc.run44.boot.tre' - 'BS/garli_cmyc.run45.boot.tre' - 'BS/garli_cmyc.run46.boot.tre' - 'BS/garli_cmyc.run47.boot.tre' - 'BS/garli_cmyc.run48.boot.tre' - 'BS/garli_cmyc.run49.boot.tre' - 'BS/garli_cmyc.run5.boot.tre' - 'BS/garli_cmyc.run50.boot.tre' - 'BS/garli_cmyc.run51.boot.tre' - 'BS/garli_cmyc.run52.boot.tre' - 'BS/garli_cmyc.run53.boot.tre' - 'BS/garli_cmyc.run54.boot.tre' - 'BS/garli_cmyc.run55.boot.tre' - 'BS/garli_cmyc.run56.boot.tre' - 'BS/garli_cmyc.run57.boot.tre' - 'BS/garli_cmyc.run58.boot.tre' - 'BS/garli_cmyc.run59.boot.tre' - 'BS/garli_cmyc.run6.boot.tre' - 'BS/garli_cmyc.run60.boot.tre' - 'BS/garli_cmyc.run61.boot.tre' - 'BS/garli_cmyc.run62.boot.tre' - 'BS/garli_cmyc.run63.boot.tre' - 'BS/garli_cmyc.run64.boot.tre' - 'BS/garli_cmyc.run65.boot.tre' - 'BS/garli_cmyc.run66.boot.tre' - 'BS/garli_cmyc.run67.boot.tre' - 'BS/garli_cmyc.run68.boot.tre' - 'BS/garli_cmyc.run69.boot.tre' - 'BS/garli_cmyc.run7.boot.tre' - 'BS/garli_cmyc.run70.boot.tre' - 'BS/garli_cmyc.run71.boot.tre' - 'BS/garli_cmyc.run72.boot.tre' - 'BS/garli_cmyc.run73.boot.tre' - 'BS/garli_cmyc.run74.boot.tre' - 'BS/garli_cmyc.run75.boot.tre' - 'BS/garli_cmyc.run76.boot.tre' - 'BS/garli_cmyc.run77.boot.tre' - 'BS/garli_cmyc.run78.boot.tre' - 'BS/garli_cmyc.run79.boot.tre' - 'BS/garli_cmyc.run8.boot.tre' - 'BS/garli_cmyc.run80.boot.tre' - 'BS/garli_cmyc.run81.boot.tre' - 'BS/garli_cmyc.run82.boot.tre' - 'BS/garli_cmyc.run83.boot.tre' - 'BS/garli_cmyc.run84.boot.tre' - 'BS/garli_cmyc.run85.boot.tre' - 'BS/garli_cmyc.run86.boot.tre' - 'BS/garli_cmyc.run87.boot.tre' - 'BS/garli_cmyc.run88.boot.tre' - 'BS/garli_cmyc.run89.boot.tre' - 'BS/garli_cmyc.run9.boot.tre' - 'BS/garli_cmyc.run90.boot.tre' - 'BS/garli_cmyc.run91.boot.tre' - 'BS/garli_cmyc.run92.boot.tre' - 'BS/garli_cmyc.run93.boot.tre' - 'BS/garli_cmyc.run94.boot.tre' - 'BS/garli_cmyc.run95.boot.tre' - 'BS/garli_cmyc.run96.boot.tre' - 'BS/garli_cmyc.run97.boot.tre' - 'BS/garli_cmyc.run98.boot.tre' - 'BS/garli_cmyc.run99.boot.tre' Total of 100 trees analyzed for summarization: - All trees were treated as unweighted - All trees were unrooted - 36 unique taxa across all trees - 190 unique splits out of a total of 6492 splits - 153 unique non-trivial splits counted out of a total of non-trivial 2792 splits Summarizing onto target tree defined in 'garli_cmyc.run84.best.tre': - Support values expressed as proportions or probabilities - Edge lengths as given on target trees - Support and other summarization annotations added to target trees as metadata Program Information ------------------- SumTrees 4.0.0 (Jan 31 2015) by Jeet Sukumaran and Mark T. Holder Using None, located at: '/Library/Python/2.7/site-packages/dendropy' Running under Python 2.7.10 (default, Aug 22 2015, 20:33:39) (GCC 4.2.1 Compatible Apple LLVM 7.0.0 (clang-700.0.59.1)), located at: '/usr/bin/python' Execution Information --------------------- Executed on Noors-MBP.us.sinet.si.edu by NDW@Noors-MBP.us.sinet.si.edu Working directory: '/Users/NDW/Documents/Research/4Gene/Manuscript/FINAL_RESULTS/Partition_Finder_NumberParams/Indiv_Genes/Cmyc/GARLI' Started at: 2015-11-16 10:46:58.759963 Ended at: 2015-11-16 10:46:59.880385 Total elapsed time: 1.120422 seconds Actual analysis time: 1.031304 seconds Citation Information -------------------- Sukumaran, J and MT Holder. 2010. DendroPy: a Python library for phylogenetic computing. Bioinformatics 26: 1569-1571. Sukumaran, J and MT Holder. SumTrees: Phylogenetic Tree Summarization. 4.0.0 (Jan 31 2015). Available at https://github.com/jeetsukumaran/DendroPy. ] BEGIN TAXA; DIMENSIONS NTAX=36; TAXLABELS Aegotheles_insignis Batrachostomus_septimus Caprimulgus_manillensis Caprimulgus_a_affinis Hydropsalis_anthonyi Antrostomus_carolinensis Gactornis_enarratus Caprimulgus_e_europaeus Caprimulgus_macrurus Hydropsalis_maculicaudus Hydropsalis_nigrescens Hydropsalis_parvulus1 Hydropsalis_parvulus2 Antrostomus_ridgwayi Antrostomus_v_vociferus Hydropsalis_whitelyi Chordeiles_acutipennis Chordeiles_pusillus Hydropsalis_anomalus Eurostopodus_argus Lyncornis_m_macrotis Hydropsalis_climacocerca Hydropsalis_rufiventris Caprimulgus_vexillarius Nyctibius_grandis Hydropsalis_albicollis Nyctiphrynus_ocellatus Hydropsalis_leucopyga Nyctiphrynus_mcleodii Antrostomus_nuttallii Chordeiles_nacunda Podargus_strigoides Caprimulgus_climacurus Siphonorhis_brewsteri Steatornis_caripensis Hydropsalis_segmentata ; END; BEGIN TREES; TREE Cmyc_PartFinder = [&U] [!GarliScore -5088.227229][!GarliModel M1 r 0.59098 4.01169 0.28259 0.59330 4.01169 1.00000 e 0.31618 0.20547 0.21349 0.26486 a 0.77675 p 0.49983 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