#NEXUS [ ============= Summary Trees ============= Summary trees generated by SumTrees. Summarization Information ------------------------- Trees read from 100 source(s): - 'BS/garli_4.run1.boot.tre' - 'BS/garli_4.run10.boot.tre' - 'BS/garli_4.run100.boot.tre' - 'BS/garli_4.run11.boot.tre' - 'BS/garli_4.run12.boot.tre' - 'BS/garli_4.run13.boot.tre' - 'BS/garli_4.run14.boot.tre' - 'BS/garli_4.run15.boot.tre' - 'BS/garli_4.run16.boot.tre' - 'BS/garli_4.run17.boot.tre' - 'BS/garli_4.run18.boot.tre' - 'BS/garli_4.run19.boot.tre' - 'BS/garli_4.run2.boot.tre' - 'BS/garli_4.run20.boot.tre' - 'BS/garli_4.run21.boot.tre' - 'BS/garli_4.run22.boot.tre' - 'BS/garli_4.run23.boot.tre' - 'BS/garli_4.run24.boot.tre' - 'BS/garli_4.run25.boot.tre' - 'BS/garli_4.run26.boot.tre' - 'BS/garli_4.run27.boot.tre' - 'BS/garli_4.run28.boot.tre' - 'BS/garli_4.run29.boot.tre' - 'BS/garli_4.run3.boot.tre' - 'BS/garli_4.run30.boot.tre' - 'BS/garli_4.run31.boot.tre' - 'BS/garli_4.run32.boot.tre' - 'BS/garli_4.run33.boot.tre' - 'BS/garli_4.run34.boot.tre' - 'BS/garli_4.run35.boot.tre' - 'BS/garli_4.run36.boot.tre' - 'BS/garli_4.run37.boot.tre' - 'BS/garli_4.run38.boot.tre' - 'BS/garli_4.run39.boot.tre' - 'BS/garli_4.run4.boot.tre' - 'BS/garli_4.run40.boot.tre' - 'BS/garli_4.run41.boot.tre' - 'BS/garli_4.run42.boot.tre' - 'BS/garli_4.run43.boot.tre' - 'BS/garli_4.run44.boot.tre' - 'BS/garli_4.run45.boot.tre' - 'BS/garli_4.run46.boot.tre' - 'BS/garli_4.run47.boot.tre' - 'BS/garli_4.run48.boot.tre' - 'BS/garli_4.run49.boot.tre' - 'BS/garli_4.run5.boot.tre' - 'BS/garli_4.run50.boot.tre' - 'BS/garli_4.run51.boot.tre' - 'BS/garli_4.run52.boot.tre' - 'BS/garli_4.run53.boot.tre' - 'BS/garli_4.run54.boot.tre' - 'BS/garli_4.run55.boot.tre' - 'BS/garli_4.run56.boot.tre' - 'BS/garli_4.run57.boot.tre' - 'BS/garli_4.run58.boot.tre' - 'BS/garli_4.run59.boot.tre' - 'BS/garli_4.run6.boot.tre' - 'BS/garli_4.run60.boot.tre' - 'BS/garli_4.run61.boot.tre' - 'BS/garli_4.run62.boot.tre' - 'BS/garli_4.run63.boot.tre' - 'BS/garli_4.run64.boot.tre' - 'BS/garli_4.run65.boot.tre' - 'BS/garli_4.run66.boot.tre' - 'BS/garli_4.run67.boot.tre' - 'BS/garli_4.run68.boot.tre' - 'BS/garli_4.run69.boot.tre' - 'BS/garli_4.run7.boot.tre' - 'BS/garli_4.run70.boot.tre' - 'BS/garli_4.run71.boot.tre' - 'BS/garli_4.run72.boot.tre' - 'BS/garli_4.run73.boot.tre' - 'BS/garli_4.run74.boot.tre' - 'BS/garli_4.run75.boot.tre' - 'BS/garli_4.run76.boot.tre' - 'BS/garli_4.run77.boot.tre' - 'BS/garli_4.run78.boot.tre' - 'BS/garli_4.run79.boot.tre' - 'BS/garli_4.run8.boot.tre' - 'BS/garli_4.run80.boot.tre' - 'BS/garli_4.run81.boot.tre' - 'BS/garli_4.run82.boot.tre' - 'BS/garli_4.run83.boot.tre' - 'BS/garli_4.run84.boot.tre' - 'BS/garli_4.run85.boot.tre' - 'BS/garli_4.run86.boot.tre' - 'BS/garli_4.run87.boot.tre' - 'BS/garli_4.run88.boot.tre' - 'BS/garli_4.run89.boot.tre' - 'BS/garli_4.run9.boot.tre' - 'BS/garli_4.run90.boot.tre' - 'BS/garli_4.run91.boot.tre' - 'BS/garli_4.run92.boot.tre' - 'BS/garli_4.run93.boot.tre' - 'BS/garli_4.run94.boot.tre' - 'BS/garli_4.run95.boot.tre' - 'BS/garli_4.run96.boot.tre' - 'BS/garli_4.run97.boot.tre' - 'BS/garli_4.run98.boot.tre' - 'BS/garli_4.run99.boot.tre' Total of 100 trees analyzed for summarization: - All trees were treated as unweighted - All trees were unrooted - 36 unique taxa across all trees - 129 unique splits out of a total of 6994 splits - 92 unique non-trivial splits counted out of a total of non-trivial 3294 splits Summarizing onto target tree defined in 'garli_4.run34.best.tre': - Support values expressed as proportions or probabilities - Edge lengths as given on target trees - Support and other summarization annotations added to target trees as metadata Program Information ------------------- SumTrees 4.0.0 (Jan 31 2015) by Jeet Sukumaran and Mark T. Holder Using None, located at: '/Library/Python/2.7/site-packages/dendropy' Running under Python 2.7.10 (default, Aug 22 2015, 20:33:39) (GCC 4.2.1 Compatible Apple LLVM 7.0.0 (clang-700.0.59.1)), located at: '/usr/bin/python' Execution Information --------------------- Executed on Noors-MBP.us.sinet.si.edu by NDW@Noors-MBP.us.sinet.si.edu Working directory: '/Users/NDW/Documents/Research/4Gene/Manuscript/FINAL_RESULTS/Partition_Finder_NumberParams/4_CodingPos/GARLI' Started at: 2015-11-16 10:46:10.060810 Ended at: 2015-11-16 10:46:11.388884 Total elapsed time: 1.328074 seconds Actual analysis time: 1.234629 seconds Citation Information -------------------- Sukumaran, J and MT Holder. 2010. DendroPy: a Python library for phylogenetic computing. Bioinformatics 26: 1569-1571. Sukumaran, J and MT Holder. SumTrees: Phylogenetic Tree Summarization. 4.0.0 (Jan 31 2015). Available at https://github.com/jeetsukumaran/DendroPy. ] BEGIN TAXA; DIMENSIONS NTAX=36; TAXLABELS Aegotheles_insignis Batrachostomus_septimus Caprimulgus_manillensis Caprimulgus_a_affinis Hydropsalis_anthonyi Antrostomus_carolinensis Gactornis_enarratus Caprimulgus_e_europaeus Caprimulgus_macrurus Hydropsalis_maculicaudus Hydropsalis_nigrescens Hydropsalis_parvulus1 Hydropsalis_parvulus2 Antrostomus_ridgwayi Antrostomus_v_vociferus Hydropsalis_whitelyi Chordeiles_acutipennis Chordeiles_pusillus Hydropsalis_anomalus Eurostopodus_argus Lyncornis_m_macrotis Hydropsalis_climacocerca Hydropsalis_rufiventris Caprimulgus_vexillarius Nyctibius_grandis Hydropsalis_albicollis Nyctiphrynus_ocellatus Hydropsalis_leucopyga Nyctiphrynus_mcleodii Antrostomus_nuttallii Chordeiles_nacunda Podargus_strigoides Caprimulgus_climacurus Siphonorhis_brewsteri Steatornis_caripensis Hydropsalis_segmentata ; END; BEGIN TREES; TREE 4_PartFinder = [&U] [!GarliScore -37631.554308][!GarliModel S 0.529613 0.194250 3.124464 0.443276 M1 r 2.12467 7.94299 0.74836 1.31852 13.68296 1.00000 e 0.25000 0.25000 0.25000 0.25000 a 0.65839 p 0.28150 M2 r 2.37410 10.25117 0.88814 1.22838 20.37611 1.00000 e 0.29225 0.22917 0.24613 0.23245 a 0.71663 p 0.67173 M3 r 0.80469 5.40474 2.84534 0.41872 77.62877 1.00000 e 0.37911 0.34549 0.14244 0.13295 a 0.53474 p 0.60625 M4 r 0.94515 4.02435 0.53560 0.95773 4.02435 1.00000 e 0.25000 0.25000 0.25000 0.25000 a 0.69562 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