#NEXUS [ ============= Summary Trees ============= Summary trees generated by SumTrees. Summarization Information ------------------------- Trees read from 100 source(s): - 'BS/garli_2.run1.boot.tre' - 'BS/garli_2.run10.boot.tre' - 'BS/garli_2.run100.boot.tre' - 'BS/garli_2.run11.boot.tre' - 'BS/garli_2.run12.boot.tre' - 'BS/garli_2.run13.boot.tre' - 'BS/garli_2.run14.boot.tre' - 'BS/garli_2.run15.boot.tre' - 'BS/garli_2.run16.boot.tre' - 'BS/garli_2.run17.boot.tre' - 'BS/garli_2.run18.boot.tre' - 'BS/garli_2.run19.boot.tre' - 'BS/garli_2.run2.boot.tre' - 'BS/garli_2.run20.boot.tre' - 'BS/garli_2.run21.boot.tre' - 'BS/garli_2.run22.boot.tre' - 'BS/garli_2.run23.boot.tre' - 'BS/garli_2.run24.boot.tre' - 'BS/garli_2.run25.boot.tre' - 'BS/garli_2.run26.boot.tre' - 'BS/garli_2.run27.boot.tre' - 'BS/garli_2.run28.boot.tre' - 'BS/garli_2.run29.boot.tre' - 'BS/garli_2.run3.boot.tre' - 'BS/garli_2.run30.boot.tre' - 'BS/garli_2.run31.boot.tre' - 'BS/garli_2.run32.boot.tre' - 'BS/garli_2.run33.boot.tre' - 'BS/garli_2.run34.boot.tre' - 'BS/garli_2.run35.boot.tre' - 'BS/garli_2.run36.boot.tre' - 'BS/garli_2.run37.boot.tre' - 'BS/garli_2.run38.boot.tre' - 'BS/garli_2.run39.boot.tre' - 'BS/garli_2.run4.boot.tre' - 'BS/garli_2.run40.boot.tre' - 'BS/garli_2.run41.boot.tre' - 'BS/garli_2.run42.boot.tre' - 'BS/garli_2.run43.boot.tre' - 'BS/garli_2.run44.boot.tre' - 'BS/garli_2.run45.boot.tre' - 'BS/garli_2.run46.boot.tre' - 'BS/garli_2.run47.boot.tre' - 'BS/garli_2.run48.boot.tre' - 'BS/garli_2.run49.boot.tre' - 'BS/garli_2.run5.boot.tre' - 'BS/garli_2.run50.boot.tre' - 'BS/garli_2.run51.boot.tre' - 'BS/garli_2.run52.boot.tre' - 'BS/garli_2.run53.boot.tre' - 'BS/garli_2.run54.boot.tre' - 'BS/garli_2.run55.boot.tre' - 'BS/garli_2.run56.boot.tre' - 'BS/garli_2.run57.boot.tre' - 'BS/garli_2.run58.boot.tre' - 'BS/garli_2.run59.boot.tre' - 'BS/garli_2.run6.boot.tre' - 'BS/garli_2.run60.boot.tre' - 'BS/garli_2.run61.boot.tre' - 'BS/garli_2.run62.boot.tre' - 'BS/garli_2.run63.boot.tre' - 'BS/garli_2.run64.boot.tre' - 'BS/garli_2.run65.boot.tre' - 'BS/garli_2.run66.boot.tre' - 'BS/garli_2.run67.boot.tre' - 'BS/garli_2.run68.boot.tre' - 'BS/garli_2.run69.boot.tre' - 'BS/garli_2.run7.boot.tre' - 'BS/garli_2.run70.boot.tre' - 'BS/garli_2.run71.boot.tre' - 'BS/garli_2.run72.boot.tre' - 'BS/garli_2.run73.boot.tre' - 'BS/garli_2.run74.boot.tre' - 'BS/garli_2.run75.boot.tre' - 'BS/garli_2.run76.boot.tre' - 'BS/garli_2.run77.boot.tre' - 'BS/garli_2.run78.boot.tre' - 'BS/garli_2.run79.boot.tre' - 'BS/garli_2.run8.boot.tre' - 'BS/garli_2.run80.boot.tre' - 'BS/garli_2.run81.boot.tre' - 'BS/garli_2.run82.boot.tre' - 'BS/garli_2.run83.boot.tre' - 'BS/garli_2.run84.boot.tre' - 'BS/garli_2.run85.boot.tre' - 'BS/garli_2.run86.boot.tre' - 'BS/garli_2.run87.boot.tre' - 'BS/garli_2.run88.boot.tre' - 'BS/garli_2.run89.boot.tre' - 'BS/garli_2.run9.boot.tre' - 'BS/garli_2.run90.boot.tre' - 'BS/garli_2.run91.boot.tre' - 'BS/garli_2.run92.boot.tre' - 'BS/garli_2.run93.boot.tre' - 'BS/garli_2.run94.boot.tre' - 'BS/garli_2.run95.boot.tre' - 'BS/garli_2.run96.boot.tre' - 'BS/garli_2.run97.boot.tre' - 'BS/garli_2.run98.boot.tre' - 'BS/garli_2.run99.boot.tre' Total of 100 trees analyzed for summarization: - All trees were treated as unweighted - All trees were unrooted - 36 unique taxa across all trees - 136 unique splits out of a total of 6997 splits - 99 unique non-trivial splits counted out of a total of non-trivial 3297 splits Summarizing onto target tree defined in 'garli_2.run33.best.tre': - Support values expressed as proportions or probabilities - Edge lengths as given on target trees - Support and other summarization annotations added to target trees as metadata Program Information ------------------- SumTrees 4.0.0 (Jan 31 2015) by Jeet Sukumaran and Mark T. Holder Using None, located at: '/Library/Python/2.7/site-packages/dendropy' Running under Python 2.7.10 (default, Aug 22 2015, 20:33:39) (GCC 4.2.1 Compatible Apple LLVM 7.0.0 (clang-700.0.59.1)), located at: '/usr/bin/python' Execution Information --------------------- Executed on Noors-MBP.us.sinet.si.edu by NDW@Noors-MBP.us.sinet.si.edu Working directory: '/Users/NDW/Documents/Research/4Gene/Manuscript/FINAL_RESULTS/Partition_Finder_NumberParams/2_CodvNon/GARLI' Started at: 2015-11-16 10:45:13.690901 Ended at: 2015-11-16 10:45:14.965743 Total elapsed time: 1.274842 seconds Actual analysis time: 1.182256 seconds Citation Information -------------------- Sukumaran, J and MT Holder. 2010. DendroPy: a Python library for phylogenetic computing. Bioinformatics 26: 1569-1571. Sukumaran, J and MT Holder. SumTrees: Phylogenetic Tree Summarization. 4.0.0 (Jan 31 2015). Available at https://github.com/jeetsukumaran/DendroPy. ] BEGIN TAXA; DIMENSIONS NTAX=36; TAXLABELS Aegotheles_insignis Batrachostomus_septimus Caprimulgus_manillensis Caprimulgus_a_affinis Hydropsalis_anthonyi Antrostomus_carolinensis Gactornis_enarratus Caprimulgus_e_europaeus Caprimulgus_macrurus Hydropsalis_maculicaudus Hydropsalis_nigrescens Hydropsalis_parvulus1 Hydropsalis_parvulus2 Antrostomus_ridgwayi Antrostomus_v_vociferus Hydropsalis_whitelyi Chordeiles_acutipennis Chordeiles_pusillus Hydropsalis_anomalus Eurostopodus_argus Lyncornis_m_macrotis Hydropsalis_climacocerca Hydropsalis_rufiventris Caprimulgus_vexillarius Nyctibius_grandis Hydropsalis_albicollis Nyctiphrynus_ocellatus Hydropsalis_leucopyga Nyctiphrynus_mcleodii Antrostomus_nuttallii Chordeiles_nacunda Podargus_strigoides Caprimulgus_climacurus Siphonorhis_brewsteri Steatornis_caripensis Hydropsalis_segmentata ; END; BEGIN TREES; TREE 2_PartFinder = [&U] [!GarliScore -37740.030778][!GarliModel S 0.362996 3.124926 0.441637 M1 r 2.17536 8.26207 0.73562 1.37977 15.65513 1.00000 e 0.27869 0.23166 0.24494 0.24471 a 0.65322 p 0.47426 M2 r 0.80234 5.40503 2.84652 0.41888 77.87119 1.00000 e 0.37920 0.34552 0.14237 0.13291 a 0.53378 p 0.60620 M3 r 0.94461 4.02327 0.53533 0.95719 4.02327 1.00000 e 0.25000 0.25000 0.25000 0.25000 a 0.69519 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