#NEXUS [ ============= Summary Trees ============= Summary trees generated by SumTrees. Summarization Information ------------------------- Trees read from 100 source(s): - 'BS/garli_soma.run1.boot.tre' - 'BS/garli_soma.run10.boot.tre' - 'BS/garli_soma.run100.boot.tre' - 'BS/garli_soma.run11.boot.tre' - 'BS/garli_soma.run12.boot.tre' - 'BS/garli_soma.run13.boot.tre' - 'BS/garli_soma.run14.boot.tre' - 'BS/garli_soma.run15.boot.tre' - 'BS/garli_soma.run16.boot.tre' - 'BS/garli_soma.run17.boot.tre' - 'BS/garli_soma.run18.boot.tre' - 'BS/garli_soma.run19.boot.tre' - 'BS/garli_soma.run2.boot.tre' - 'BS/garli_soma.run20.boot.tre' - 'BS/garli_soma.run21.boot.tre' - 'BS/garli_soma.run22.boot.tre' - 'BS/garli_soma.run23.boot.tre' - 'BS/garli_soma.run24.boot.tre' - 'BS/garli_soma.run25.boot.tre' - 'BS/garli_soma.run26.boot.tre' - 'BS/garli_soma.run27.boot.tre' - 'BS/garli_soma.run28.boot.tre' - 'BS/garli_soma.run29.boot.tre' - 'BS/garli_soma.run3.boot.tre' - 'BS/garli_soma.run30.boot.tre' - 'BS/garli_soma.run31.boot.tre' - 'BS/garli_soma.run32.boot.tre' - 'BS/garli_soma.run33.boot.tre' - 'BS/garli_soma.run34.boot.tre' - 'BS/garli_soma.run35.boot.tre' - 'BS/garli_soma.run36.boot.tre' - 'BS/garli_soma.run37.boot.tre' - 'BS/garli_soma.run38.boot.tre' - 'BS/garli_soma.run39.boot.tre' - 'BS/garli_soma.run4.boot.tre' - 'BS/garli_soma.run40.boot.tre' - 'BS/garli_soma.run41.boot.tre' - 'BS/garli_soma.run42.boot.tre' - 'BS/garli_soma.run43.boot.tre' - 'BS/garli_soma.run44.boot.tre' - 'BS/garli_soma.run45.boot.tre' - 'BS/garli_soma.run46.boot.tre' - 'BS/garli_soma.run47.boot.tre' - 'BS/garli_soma.run48.boot.tre' - 'BS/garli_soma.run49.boot.tre' - 'BS/garli_soma.run5.boot.tre' - 'BS/garli_soma.run50.boot.tre' - 'BS/garli_soma.run51.boot.tre' - 'BS/garli_soma.run52.boot.tre' - 'BS/garli_soma.run53.boot.tre' - 'BS/garli_soma.run54.boot.tre' - 'BS/garli_soma.run55.boot.tre' - 'BS/garli_soma.run56.boot.tre' - 'BS/garli_soma.run57.boot.tre' - 'BS/garli_soma.run58.boot.tre' - 'BS/garli_soma.run59.boot.tre' - 'BS/garli_soma.run6.boot.tre' - 'BS/garli_soma.run60.boot.tre' - 'BS/garli_soma.run61.boot.tre' - 'BS/garli_soma.run62.boot.tre' - 'BS/garli_soma.run63.boot.tre' - 'BS/garli_soma.run64.boot.tre' - 'BS/garli_soma.run65.boot.tre' - 'BS/garli_soma.run66.boot.tre' - 'BS/garli_soma.run67.boot.tre' - 'BS/garli_soma.run68.boot.tre' - 'BS/garli_soma.run69.boot.tre' - 'BS/garli_soma.run7.boot.tre' - 'BS/garli_soma.run70.boot.tre' - 'BS/garli_soma.run71.boot.tre' - 'BS/garli_soma.run72.boot.tre' - 'BS/garli_soma.run73.boot.tre' - 'BS/garli_soma.run74.boot.tre' - 'BS/garli_soma.run75.boot.tre' - 'BS/garli_soma.run76.boot.tre' - 'BS/garli_soma.run77.boot.tre' - 'BS/garli_soma.run78.boot.tre' - 'BS/garli_soma.run79.boot.tre' - 'BS/garli_soma.run8.boot.tre' - 'BS/garli_soma.run80.boot.tre' - 'BS/garli_soma.run81.boot.tre' - 'BS/garli_soma.run82.boot.tre' - 'BS/garli_soma.run83.boot.tre' - 'BS/garli_soma.run84.boot.tre' - 'BS/garli_soma.run85.boot.tre' - 'BS/garli_soma.run86.boot.tre' - 'BS/garli_soma.run87.boot.tre' - 'BS/garli_soma.run88.boot.tre' - 'BS/garli_soma.run89.boot.tre' - 'BS/garli_soma.run9.boot.tre' - 'BS/garli_soma.run90.boot.tre' - 'BS/garli_soma.run91.boot.tre' - 'BS/garli_soma.run92.boot.tre' - 'BS/garli_soma.run93.boot.tre' - 'BS/garli_soma.run94.boot.tre' - 'BS/garli_soma.run95.boot.tre' - 'BS/garli_soma.run96.boot.tre' - 'BS/garli_soma.run97.boot.tre' - 'BS/garli_soma.run98.boot.tre' - 'BS/garli_soma.run99.boot.tre' Total of 100 trees analyzed for summarization: - All trees were treated as unweighted - All trees were unrooted - 36 unique taxa across all trees - 268 unique splits out of a total of 6664 splits - 231 unique non-trivial splits counted out of a total of non-trivial 2964 splits Summarizing onto target tree defined in 'garli_soma.run84.best.tre': - Support values expressed as proportions or probabilities - Edge lengths as given on target trees - Support and other summarization annotations added to target trees as metadata Program Information ------------------- SumTrees 4.0.0 (Jan 31 2015) by Jeet Sukumaran and Mark T. Holder Using None, located at: '/Library/Python/2.7/site-packages/dendropy' Running under Python 2.7.10 (default, Aug 22 2015, 20:33:39) (GCC 4.2.1 Compatible Apple LLVM 7.0.0 (clang-700.0.59.1)), located at: '/usr/bin/python' Execution Information --------------------- Executed on Noors-MBP.us.sinet.si.edu by NDW@Noors-MBP.us.sinet.si.edu Working directory: '/Users/NDW/Documents/Research/4Gene/Manuscript/FINAL_RESULTS/Partition_Finder_NumberParams/Indiv_Genes/GH/GARLI' Started at: 2015-11-16 10:47:14.480212 Ended at: 2015-11-16 10:47:15.662262 Total elapsed time: 1.18205 seconds Actual analysis time: 1.076772 seconds Citation Information -------------------- Sukumaran, J and MT Holder. 2010. DendroPy: a Python library for phylogenetic computing. Bioinformatics 26: 1569-1571. Sukumaran, J and MT Holder. SumTrees: Phylogenetic Tree Summarization. 4.0.0 (Jan 31 2015). Available at https://github.com/jeetsukumaran/DendroPy. ] BEGIN TAXA; DIMENSIONS NTAX=36; TAXLABELS Aegotheles_insignis Batrachostomus_septimus Caprimulgus_manillensis Caprimulgus_a_affinis Hydropsalis_anthonyi Antrostomus_carolinensis Gactornis_enarratus Caprimulgus_e_europaeus Caprimulgus_macrurus Hydropsalis_maculicaudus Hydropsalis_nigrescens Hydropsalis_parvulus1 Hydropsalis_parvulus2 Antrostomus_ridgwayi Antrostomus_v_vociferus Hydropsalis_whitelyi Chordeiles_acutipennis Chordeiles_pusillus Hydropsalis_anomalus Eurostopodus_argus Lyncornis_m_macrotis Hydropsalis_climacocerca Hydropsalis_rufiventris Caprimulgus_vexillarius Nyctibius_grandis Hydropsalis_albicollis Nyctiphrynus_ocellatus Hydropsalis_leucopyga Nyctiphrynus_mcleodii Antrostomus_nuttallii Chordeiles_nacunda Podargus_strigoides Caprimulgus_climacurus Siphonorhis_brewsteri Steatornis_caripensis Hydropsalis_segmentata ; END; BEGIN TREES; TREE Soma_PartFinder = [&U] [!GarliScore -7339.502288][!GarliModel M1 r 1.21009 4.32781 0.59509 1.20174 5.38059 1.00000 e 0.25000 0.25000 0.25000 0.25000 a 0.90989 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