#NEXUS [written Tue Sep 01 01:54:18 EEST 2015 by Mesquite version 3.04 (build 725) at alexander/192.168.1.101] BEGIN TAXA; TITLE 'Polymastia spp. (clones and direct sequences of D1-D19 region, LSU)'; DIMENSIONS NTAX=23; TAXLABELS Polymastia_andrica_ZMBN98055 Polymastia_andrica_ZMBN98057 Polymastia_andrica_ZMBN98074_LN873473 Polymastia_andrica_ZMBN98074_LN873474 Polymastia_andrica_ZMBN98074_LN873475 Polymastia_andrica_ZMBN98074_LN873476 Polymastia_andrica_ZMBN98074_LN873477 Polymastia_arctica_ZMBN98060_LN873465 Polymastia_arctica_ZMBN98060_LN873466 Polymastia_arctica_ZMBN98060_LN873467 Polymastia_arctica_ZMBN98060_LN873468 Polymastia_arctica_ZMBN98062 Polymastia_arctica_ZMBN98063_LN873469 Polymastia_arctica_ZMBN98063_LN873470 Polymastia_arctica_ZMBN98065_LN873471 Polymastia_arctica_ZMBN98065_LN873472 Polymastia_arctica_ZMBN98068 Polymastia_grimaldii_ZMBN98064_LN873478 Polymastia_grimaldii_ZMBN98064_LN873479 Polymastia_grimaldii_ZMBN98064_LN873480 Polymastia_grimaldii_ZMBN98064_LN873481 Polymastia_grimaldii_ZMBN98064_LN873482 Polymastia_mamillaris_ZMBN98078 ; END; BEGIN CHARACTERS; TITLE 'D1-D19 region, LSU of clones and direct sequences of Polymastia spp.'; DIMENSIONS NCHAR=653; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Polymastia_andrica_ZMBN98055 ACACGGACCAAGGAGTGCAACATGCGTGCGAGTCTTTGGGTGTCAAACCCGCCGGCGCAATGAAAGTGAAGGCAGACGTCGGTTTGCCGAGGTGAGAGCCCCC-GTCCGGGGGGCGCATCATCGACCGATCCCAGGCTACGCCGTAGCGGGATTTGAGTGAGAGCGTGCCTGTTGCGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCGGTGCAGTTTTATCAGGTAAAGCGAATGATTAGAGGTCTTGGGATTGAAACAATCTCAACCTATTCTCAAACTTTAAATGGGTAAGAAGCCCGGCTTGCTTGGTTGAAGTCGGGCATGGAATGCTGGGGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGAATGCTGGGTTAAGGTGCCCGAATCGACGCTCATCAGATACCATGAAAGGTGTTGGTTGATCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAATCCGCTAAGGAGTGTGTAACAACC Polymastia_andrica_ZMBN98057 ACACGGACCAAGGAGTGCAACATGCGTGCGAGTCTTTGGGTGTCAAACCCGCCGGCGCAATGAAAGTGAAGGCAGACGTCGGTTTGCCGAGGTGAGAGCCCCC-GTCCGGGGGGCGCATCATCGACCGATCCCAGGCTACGCCGTAGCGGGATTTGAGTGAGAGCGTGCCTGTTGCGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCGGTGCAGTTTTATCAGGTAAAGCGAATGATTAGAGGTCTTGGGATTGAAACAATCTCAACCTATTCTCAAACTTTAAATGGGTAAGAAGCCCGGCTTGCTTGGTTGAAGTCGGGCATGGAATGCTGGGGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGAATGCTGGGTTAAGGTGCCCGAATCGACGCTCATCAGATACCATGAAAGGTGTTGGTTGATCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAATCCGCTAAGGAGTGTGTAACAACC Polymastia_andrica_ZMBN98074_LN873473 ACACGGACCAAGGAGTGCAACATGCGTGCGAGTCTTTGGGTGTCAAACCCGCCGGCGCAATGAAAGTGAAGGCAGACGTCGGTTTGCCGAGGTGAGAGCCCCCTTTCCGTGGGGCGCATCATCGACCGATCCCAGGCTACGCCGTAGCGGGATTTGAGTGAGAGCGTGCCTGTTGCGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCGGTGCAGTTTTATCAGGTAAAGCGAATGATTAGAGGTCTTGGGATTGAAACAATCTCAACCTATTCTCAAACTTTAAATGGGTAAGAAGCCCGGCTTGCTTGGTTGAAGTCGGGCATGGAATGCTGGGGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGAATGCTGGGTTAAGGTGCCCGAATCGACGCTCATCAGATACCATGAAAGGTGTTGGTTGATCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAATCCGCTAAGGAGTGTGTAACAACC Polymastia_andrica_ZMBN98074_LN873474 ACACGGACCAAGGAGTGCAACATGCGTGCGAGTCTTTGGGTGTCAAACCCGCCGGCGCAATGAAAGTGAAGGCAGACGTCGGTTTGCCGAGGTGAGAGCCCCCTTTCCGGGGGGCGCATCATCGACCGATCCCAGGCTACGCCGTAGCGGGATTTGAGTGAGAGCGTGCCTGTTGCGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCGGTGCAGTTTTATCAGGTAAAGCGAATGATTAGAGGTCTTGGGATTGAAACAATCTCAACCTATTCTCAAACTTTAAATGGGTAAGAAGCCCGGCTTGCTTGGTTGAAGTCGGGCATGGAATGCTGGGGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGAATGCTGGGTTAAGGTGCCCGAATCGACGCTCATCAGATACCATGAAAGGTGTTGGTTGATCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAATCCGCTAAGGAGTGTGTAACAACC Polymastia_andrica_ZMBN98074_LN873475 ACACGGACCAAGGAGTGCAACATGCGTGCGAGTCTTTGGGTGTCAAACCCGCCGGCGCAATGAAAGTGAAGGCAGACGTCGGTTTGCCGAGGTGAGAGCCCCC-GTCCGGGGGGCGCATCATCGACCGATCCCAGGCTACGCCGTAGCGGGATTTGAGTGAGAGCGTGCCTGTTGCGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCGGTGCAGTTTTATCAGGTAAAGCGAATGATTAGAGGTCTTGGGATTGAAACAATCTCAACCTATTCTCAAACTTTAAATGGGTAAGAAGCCCGGCTTGCTTGGTTGAAGTCGGGCATGGAATGCTGGGGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGAATGCTGGGTTAAGGTGCCCGAATCGACGCTCATCAGATACCATGAAAGGTGTTGGTTGATCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAATCCGCTAAGGAGTGTGTAACAACC Polymastia_andrica_ZMBN98074_LN873476 ACACGGACCAAGGAGTGCAACATGCGTGCGAGTCTTTGGGTGTCAAACCCGCCGGCGCAATGAAAGTGAAGGCAGACGTCGGTTTGCCGAGGTGAGAGCCCCCTTTCCGGGGGGCGCATCATCGACCGATCCCAGGCTACGCCGTAGCGGGATTTGAGTGAGAGCGTGCCTGTTGCGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCGGTGCAGTTTTATCAGGTAAAGCGAATGATTAGAGGTCTTGGGATTGAAACAATCTCAACCTATTCTCAAACTTTAAATGGGTAAGAAGCCCGGCTTGCTTAGTTGAAGTCGGGCATGGAATGCTGGGGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGAATGCTGGGTTAAGGTGCCCGAATCGACGCTCATCAGATACCATGAAAGGTGTTGGTTGATCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAATCCGCTAAGGAGTGTGTAACAACC Polymastia_andrica_ZMBN98074_LN873477 ACACGGACCAAGGAGTGCAACATGCGTGCGAGTCTTTGGGTGTCAAACCCGCCGGCGCAATGAAAGTGAAGGCAGACGTCGGTTTGCCGAGGTGAGAGCCCCC-GACC-GGGGGCGCATCATCGACCGATCCCAGGCTACGCCGTAGCGGGATTTGAGTGAGAGCGTGCCTGTTGCGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCGGTGCAGTTTTATCAGGTAAAGCGAATGATTAGAGGTCTTGGGATTGAAACAATCTCAACCTATTCTCAAACTTTAAATGGGTAAGAAGCCCGGCTTGCTTGGTTGAAGTCGGGCATGGAATGCTGGGGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGAATGCTGGGTTAAGGTGCCCGAATCGACGCTCATCAGATACCATGAAAGGTGTTGGTTGATCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAATCCGCTAAGGAGTGTGTAACAACC Polymastia_arctica_ZMBN98060_LN873465 ACACGGACCAAGGAGTGCAACATGCGTGCGAGTCTTTGGGTGTCAAACCCGCCGGCGCAATGAAAGTGAAGGCAGACGTCGGTTTGCCGAGGTGAGAGCCCCCTTTCCGGGGGGCGCATCATCGACCGATCCCAGGCTACGCCGTAGCGGGATTTGAGTGAGAGCGTGCCTGTTGCGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCGGTGCAGTTTTATCAGGTAAAGCGAATGATTAGAGGTCTTGGGATTGAAACAATCTCAACCTATTCTCAAACTTTAAATGGGTAAGAAGCCCGGCTTGCTTGGTTGAAGTCGGGCATGGAATGCTGGGGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGAATGCTGGGTTAAGGTGCCCGAATCGACGCTCATCAGATACCATGAAAGGTGTTGGTTGATCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAATCCGCTAAGGAGTGTGTAACAACC Polymastia_arctica_ZMBN98060_LN873466 ACACGGACCAAGGAGTGCAACATGCGTGCGAGTCTTTGGGTGTCAAACCCGCCGGCGCAATGAAAGTGAAGGCAGACGTCGGTTTGCCGAGGTGAGAGCCCCCTTTCCGTGGGGCGCATCATCGACCGATCCCAGGCTACGCCGTAGCGGGATTTGAGTGAGAGCGTGCCTGTTGCGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCGGTGCAGTTTTATCAGGTAAAGCGAATGATTAGAGGTCTTGGGATTGAAACAATCTCAACCTATTCTCAAACTTTAAATGGGTAAGAAGCCCGGCTTGCTTGGTTGAAGTCGGGCATGGAATGCTGGGGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGAATGCTGGGTTAAGGTGCCCGAATCGACGCTCATCAGATACCATGAAAGGTGTTGGTTGATCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAATCCGCTAAGGAGTGTGTAACAACC Polymastia_arctica_ZMBN98060_LN873467 ACACGGACCAAGGAGTGCAACATGCGTGCGAGTCTTTGGGTGTCAAACCCGCCGGCGCAATGAAAGTGAAGGCAGACGTCGGTTTGCCGAGGTGAGAGCCCCC-GACC-GGGGGCGCATCATCGACCGATCCCAGGCTACGCCGTAGCGGGATTTGAGTGAGAGCGTGCCTGTTGCGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCGGTGCAGTTTTATCAGGTAAAGCGAATGATTAGAGGTCTTGGGATTGAAACAATCTCAACCTATTCTCAAACTTTAAATGGGTAAGAAGCCCGGCTTGCTTGGTTGAAGTCGGGCATGGAATGCTGGGGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGAATGCTGGGTTAAGGTGCCCGAATCGACGCTCATCAGATACCATGAAAGGTGTTGGTTGATCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAATCCGCTAAGGAGTGTGTAACAACC Polymastia_arctica_ZMBN98060_LN873468 ACACGGACCAAGGAGTGCAACATGCGTGCGAGTCTTTGGGTGTCAAACCCGCCGGCGCAATGAAAGTGAAGGCAGACGTCGGTTTGCCGAGGTGAGAGCCCCC-GTCCGGGGGGCGCATCATCGACCGATCCCAGGCTACGCCGTAGCGGGATTTGAGTGAGAGCGTGCCTGTTGCGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCGGTGCAGTTTTATCAGGTAAAGCGAATGATTAGAGGTCTTGGGATTGAAACAATCTCAACCTATTCTCAAACTTTAAATGGGTAAGAAGCCCGGCTTGCTTGGTTGAAGTCGGGCATGGAATGCTGGGGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGAATGCTGGGTTAAGGTGCCCGAATCGACGCTCATCAGATACCATGAAAGGTGTTGGTTGATCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAATCCGCTAAGGAGTGTGTAACAACC Polymastia_arctica_ZMBN98062 ACACGGACCAAGGAGTGCAACATGCGTGCGAGTCTTTGGGTGTCAAACCCGCCGGCGCAATGAAAGTGAAGGCAGACGTCGGTTTGCCGAGGTGAGAGCCCCC-GTCCGGGGGGCGCATCATCGACCGATCCCAGGCTACGCCGTAGCGGGATTTGAGTGAGAGCGTGCCTGTTGCGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCGGTGCAGTTTTATCAGGTAAAGCGAATGATTAGAGGTCTTGGGATTGAAACAATCTCAACCTATTCTCAAACTTTAAATGGGTAAGAAGCCCGGCTTGCTTGGTTGAAGTCGGGCATGGAATGCTGGGGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGAATGCTGGGTTAAGGTGCCCGAATCGACGCTCATCAGATACCATGAAAGGTGTTGGTTGATCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAATCCGCTAAGGAGTGTGTAACAACC Polymastia_arctica_ZMBN98063_LN873469 ACACGGACCAAGGAGTGCAACATGCGTGCGAGTCTTTGGGTGTCAAACCCGCCGGCGCAATGAAAGTGAAGGCAGACGTCGGTTTGCCGAGGTGAGAGCCCCCTTTCCGGGGGGCGCATCATCGACCGATCCCAGGCTACGCCGTAGCGGGATTTGAGTGAGAGCGTGCCTGTTGCGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCGGTGCAGTTTTATCAGGTAAAGCGAATGATTAGAGGTCTTGGGATTGAAACAATCTCAACCTATTCTCAAACTTTAAATGGGTAAGAAGCCCGGCTTGCTTAGTTGAAGTCGGGCATGGAATGCTGGGGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGAATGCTGGGTTAAGGTGCCCGAATCGACGCTCATCAGATACCATGAAAGGTGTTGGTTGATCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAATCCGCTAAGGAGTGTGTAACAACC Polymastia_arctica_ZMBN98063_LN873470 ACACGGACCAAGGAGTGCAACATGCGTGCGAGTCTTTGGGTGTCAAACCCGCCGGCGCAATGAAAGTGAAGGCAGACGTCGGTTTGCCGAGGTGAGAGCCCCC-GTCCGGGGGGCGCATCATCGACCGATCCCAGGCTACGCCGTAGCGGGATTTGAGTGAGAGCGTGCCTGTTGCGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCGGTGCAGTTTTATCAGGTAAAGCGAATGATTAGAGGTCTTGGGATTGAAACAATCTCAACCTATTCTCAAACTTTAAATGGGTAAGAAGCCCGGCTTGCTTGGTTGAAGTCGGGCATGGAATGCTGGGGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGAATGCTGGGTTAAGGTGCCCGAATCGACGCTCATCAGATACCATGAAAGGTGTTGGTTGATCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAATCCGCTAAGGAGTGTGTAACAACC Polymastia_arctica_ZMBN98065_LN873471 ACACGGACCAAGGAGTGCAACATGCGTGCGAGTCTTTGGGTGTCAAACCCGCCGGCGCAATGAAAGTGAAGGCAGACGTCGGTTTGCCGAGGTGAGAGCCCCC-GACC-GGGGGCGCATCATCGACCGATCCCAGGCTACGCCGTAGCGGGATTTGAGTGAGAGCGTGCCTGTTGCGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCGGTGCAGTTTTATCAGGTAAAGCGAATGATTAGAGGTCTTGGGATTGAAACAATCTCAACCTATTCTCAAACTTTAAATGGGTAAGAAGCCCGGCTTGCTTAATTGAAGTCGGGCATGGAATGCTGGGGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGAATGCTGGGTTAAGGTGCCCGAATCGACGCTCATCAGATACCATGAAAGGTGTTGGTTGATCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAATCCGCTAAGGAGTGTGTAACAACC Polymastia_arctica_ZMBN98065_LN873472 ACACGGACCAAGGAGTGCAACATGCGTGCGAGTCTTTGGGTGTCAAACCCGCCGGCGCAATGAAAGTGAAGGCAGACGTCGGTTTGCCGAGGTGAGAGCCCCCTTTCCGGGGGGCGCATCATCGACCGATCCCAGGCTACGCCGTAGCGGGATTTGAGTGAGAGCGTGCCTGTTGCGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCGGTGCAGTTTTATCAGGTAAAGCGAATGATTAGAGGTCTTGGGATTGAAACAATCTCAACCTATTCTCAAACTTTAAATGGGTAAGAAGCCCGGCTTGCTTAGTTGAAGTCGGGCATGGAATGCTGGGGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGAATGCTGGGTTAAGGTGCCCGAATCGACGCTCATCAGATACCATGAAAGGTGTTGGTTGATCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAATCCGCTAAGGAGTGTGTAACAACC Polymastia_arctica_ZMBN98068 ACACGGACCAAGGAGTGCAACATGCGTGCGAGTCTTTGGGTGTCAAACCCGCCGGCGCAATGAAAGTGAAGGCAGACGTCGGTTTGCCGAGGTGAGAGCCCCCTTTCCGGGGGGCGCATCATCGACCGATCCCAGGCTACGCCGTAGCGGGATTTGAGTGAGAGCGTGCCTGTTGCGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCGGTGCAGTTTTATCAGGTAAAGCGAATGATTAGAGGTCTTGGGATTGAAACAATCTCAACCTATTCTCAAACTTTAAATGGGTAAGAAGCCCGGCTTGCTTGGTTGAAGTCGGGCATGGAATGCTGGGGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGAATGCTGGGTTAAGGTGCCCGAATCGACGCTCATCAGATACCATGAAAGGTGTTGGTTGATCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAATCCGCTAAGGAGTGTGTAACAACC Polymastia_grimaldii_ZMBN98064_LN873478 ACACGGACCAAGGAGTGCAACATGCGTGCGAGTCTTTGGGTGTCAAACCCGCCGGCGCAATGAAAGTGAAGGCAGACGTCGGTTTGCCGAGGTGAGAGCCCCC-GTCCGGGGGGCGCATCATCGACCGATCCCAGGCTACGCCGTAGCGGGATTTGAGTGAGAGCGTGCCTGTTGCGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCGGTGCAGTTTTATCAGGTAAAGCGAATGATTAGAGGTCTTGGGATTGAAACAATCTCAACCTATTCTCAAACTTTAAATGGGTAAGAAGCCCGGCTTGCTTGGTTGAAGTCGGGCATGGAATGCTGGGGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGAATGCTGGGTTAAGGTGCCCGAATCGACGCTCATCAGATACCATGAAAGGTGTTGGTTGATCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAATCCGCTAAGGAGTGTGTAACAACC Polymastia_grimaldii_ZMBN98064_LN873479 ACACGGACCAAGGAGTGCAACATGCGTGCGAGTCTTTGGGTGTCAAACCCGCCGGCGCAATGAAAGTGAAGGCAGACGTCGGTTTGCCGAGGTGAGAGCCCCCTTTCCGGGGGGCGCATCATCGACCGATCCCAGGCTACGCCGTAGCGGGATTTGAGTGAGAGCGTGCCTGTTGCGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCGGTGCAGTTTTATCAGGTAAAGCGAATGATTAGAGGTCTTGGGATTGAAACAATCTCAACCTATTCTCAAACTTTAAATGGGTAAGAAGCCCGGCTTGCTTAGTTGAAGTCGGGCATGGAATGCTGGGGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGAATGCTGGGTTAAGGTGCCCGAATCGACGCTCATCAGATACCATGAAAGGTGTTGGTTGATCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAATCCGCTAAGGAGTGTGTAACAACC Polymastia_grimaldii_ZMBN98064_LN873480 ACACGGACCAAGGAGTGCAACATGCGTGCGAGTCTTTGGGTGTCAAACCCGCCGGCGCAATGAAAGTGAAGGCAGACGTCGGTTTGCCGAGGTGAGAGCCCCC-GTCCGGGGGGCGCATCATCGACCGATCCCAGGCTACGCCGTAGCGGGATTTGAGTGAGAGCGTGCCTGTTGCGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCGGTGCAGTTTTATCAGGTAAAGCGAATGATTAGAGGTCTTGGGATTGAAACAATCTCAACCTATTCTCAAACTTTAAATGGGTAAGAAGCCCGGCTTGCTTAGTTGAAGTCGGGCATGGAATGCTGGGGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGAATGCTGGGTTAAGGTGCCCGAATCGACGCTCATCAGATACCATGAAAGGTGTTGGTTGATCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAATCCGCTAAGGAGTGTGTAACAACC Polymastia_grimaldii_ZMBN98064_LN873481 ACACGGACCAAGGAGTGCAACATGCGTGCGAGTCTTTGGGTGTCAAACCCGCCGGCGCAATGAAAGTGAAGGCAGACGTCGGTTTGCCGAGGTGAGAGCCCCCTTTCCGGGGGGCGCATCATCGACCGATCCCAGGCTACGCCGTAGCGGGATTTGAGTGAGAGCGTGCCTGTTGCGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCGGTGCAGTTTTATCAGGTAAAGCGAATGATTAGAGGTCTTGGGATTGAAACAATCTCAACCTATTCTCAAACTTTAAATGGGTAAGAAGCCCGGCTTGCTTGGTTGAAGTCGGGCATGGAATGCTGGGGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGAATGCTGGGTTAAGGTGCCCGAATCGACGCTCATCAGATACCATGAAAGGTGTTGGTTGATCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAATCCGCTAAGGAGTGTGTAACAACC Polymastia_grimaldii_ZMBN98064_LN873482 ACACGGACCAAGGAGTGCAACATGCGTGCGAGTCTTTGGGTGTCAAACCCGCCGGCGCAATGAAAGTGAAGGCAGACGTCGGTTTGCCGAGGTGAGAGCCCCC-GACC-GGGGGCGCATCATCGACCGATCCCAGGCTACGCCGTAGCGGGATTTGAGTGAGAGCGTGCCTGTTGCGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCGGTGCAGTTTTATCAGGTAAAGCGAATGATTAGAGGTCTTGGGATTGAAACAATCTCAACCTATTCTCAAACTTTAAATGGGTAAGAAGCCCGGCTTGCTTAATTGAAGTCGGGCATGGAATGCTGGGGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGAATGCTGGGTTAAGGTGCCCGAATCGACGCTCATCAGATACCATGAAAGGTGTTGGTTGATCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAATCCGCTAAGGAGTGTGTAACAACC Polymastia_mamillaris_ZMBN98078 ACACGGACCAAGGAGTGCAACATGCGTGCGAGTCTTTGGGTGTCAAACCCGCCGGCGCAATGAAAGTGAAGGCAGACGTCGGTTTGCCGAGGTGAGAGCCCCC-GTCCGGGGGGCGCATCATCGACCGATCCCAGGCTACGCCGTAGCGGGATTTGAGTGAGAGCGTGCCTGTTGCGACCCGAAAGATGGTGAACTATGCCTGAATAGGGCGAAGCCAGAGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGAAAGACTAATCGAACCGTCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCGGTGCAGTTTTATCAGGTAAAGCGAATGATTAGAGGTCTTGGGGTTGAAACAACCTCAACCTATTCTCAAACTTTAAATGGGTAAGAAGCCCGGCTTGCTTGGTTGAAGTCGGGCATGGAATGCTGGGGCTCTTAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACCGAATGCTGGGTTAAGGTGCCCGAATCGACGCTCATCAGATACCATGAAAGGTGTTGGTTGATCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAATCCGCTAAGGAGTGTGTAACAACC ; END; BEGIN TREES; Title 'Intragenomic polymorphism of D1-D19 region, LSU in Polymastiia spp.'; LINK Taxa = 'Polymastia spp. (clones and direct sequences of D1-D19 region, LSU)'; TRANSLATE [0] 1 Polymastia_andrica_ZMBN98055, [1] 2 Polymastia_andrica_ZMBN98057, [2] 3 Polymastia_andrica_ZMBN98074_LN873473, [3] 4 Polymastia_andrica_ZMBN98074_LN873474, [4] 5 Polymastia_andrica_ZMBN98074_LN873475, [5] 6 Polymastia_andrica_ZMBN98074_LN873476, [6] 7 Polymastia_andrica_ZMBN98074_LN873477, [7] 8 Polymastia_arctica_ZMBN98060_LN873465, [8] 9 Polymastia_arctica_ZMBN98060_LN873466, [9] 10 Polymastia_arctica_ZMBN98060_LN873467, [10] 11 Polymastia_arctica_ZMBN98060_LN873468, [11] 12 Polymastia_arctica_ZMBN98062, [12] 13 Polymastia_arctica_ZMBN98063_LN873469, [13] 14 Polymastia_arctica_ZMBN98063_LN873470, [14] 15 Polymastia_arctica_ZMBN98065_LN873471, [15] 16 Polymastia_arctica_ZMBN98065_LN873472, [16] 17 Polymastia_arctica_ZMBN98068, [17] 18 Polymastia_grimaldii_ZMBN98064_LN873478, [18] 19 Polymastia_grimaldii_ZMBN98064_LN873479, [19] 20 Polymastia_grimaldii_ZMBN98064_LN873480, [20] 21 Polymastia_grimaldii_ZMBN98064_LN873481, [21] 22 Polymastia_grimaldii_ZMBN98064_LN873482, [22] 23 Polymastia_mamillaris_ZMBN98078; TREE 'PhyML tree (intragenomic polymorphism of D1-D19 region, LSU in Polymastiia spp.)' = (((((((6:0.0,(19:0.0,13:0.0):0.0):0.0,(16:0.0,((3:0.0,9:0.0):0.00166,(21:0.0,(4:0.0,(8:0.0,17:0.0):0.0):0.0):0.0):0.00161):0.0):0.00162,20:0.0):0.00159,(((15:0.0,22:0.0):0.00326,10:0.0):0.0,7:0.0):0.00166):0.0,(2:0.0,(1:0.0,(18:0.0,(5:0.0,(14:0.0,11:0.0):0.0):0.0):0.0):0.0):0.0):0.0,12:0.0):0.00037,23:0.00309)[% ] [% ] [% setBetweenBits = selected ]; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = 'D1-D19 region, LSU of clones and direct sequences of Polymastia spp.') = unord: 1 - 653; END; BEGIN CODONS; CODESET * UNTITLED (CHARACTERS = 'D1-D19 region, LSU of clones and direct sequences of Polymastia spp.') = universal: 1 - 653; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = 'D1-D19 region, LSU of clones and direct sequences of Polymastia spp.') = 'Jukes-Cantor': 1 - 653; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1441061658921; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6858184500625310840; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 1457777301817122712; mqVersion 304; checksumv 0 3 2685282443 null getNumChars 653 numChars 653 getNumTaxa 23 numTaxa 23 short true bits 15 states 15 sumSquaresStatesOnly 302273.0 sumSquares 302273.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1920 968; setLocation -4 -4; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxasList #mesquite.lists.TaxablockList.TaxablockList; tell It; getWindow; tell It; newAssistant #mesquite.lists.TaxablockListNumber.TaxablockListNumber; getTable; tell It; rowNamesWidth 362; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 896; setLocation -4 -4; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.lib.ListableVectorWindow.ibeam; endTell; endTell; showWindow; endTell; showTaxa #6858184500625310840 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #6858184500625310840; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 896; setLocation -4 -4; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; showTrees 0 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 1; getWindow; tell It; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; getTable; tell It; rowNamesWidth 432; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 896; setLocation -4 -4; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TreesList.TreesListWindow.ibeam; endTell; endTell; showWindow; endTell; showTreeBlocks #mesquite.lists.TreeblockList.TreeblockList; tell It; getWindow; tell It; newAssistant #mesquite.lists.TreeblocksListNumber.TreeblocksListNumber; newAssistant #mesquite.lists.TreeblocksListTaxa.TreeblocksListTaxa; getTable; tell It; rowNamesWidth 457; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 896; setLocation -4 -4; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.lib.ListableVectorWindow.ibeam; endTell; endTell; showWindow; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #6858184500625310840 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 3703.1441061600187.7319557832693510201; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 896; setLocation -4 -4; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven off; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; orientRight; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #1457777301817122712 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 222; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1820 896; setLocation -4 -4; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;