#NEXUS [written Sun May 31 18:56:07 EDT 2015 by Mesquite version 2.75 (build 564) at obase-THINK/10.248.24.63] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=18; TAXLABELS Capronia_semiimmersa_MUCL_15537 Cladophialophora_abundans_CBS_126736 Cladophialophora_australiensis_CBS_112793 Cladophialophora_boppii_CBS_126.86 Cladophialophora_carrionii_CBS_114393 Cladophialophora_chaetospira_CBS_114747 Cladophialophora_chaetospira_CBS_491.70 Cladophialophora_chaetospira_CBS_514.63 Cladophialophora_floridana_SR1004 Cladophialophora_floridana_SR3028 Cladophialophora_multiseptata_FMR10591 Cladophialophora_potulentorum_CBS_112222 Cladophialophora_potulentorum_CBS_114772 Cladophialophora_samoensis_CBS_259.83 Cladophialophora_tortuosa_BA4b006 Cladophialophora_yegresii_CBS_114405 Phialophora_verrucosa_IFM_4928 Phialophora_verrucosa_IFM_5089 ; END; BEGIN CHARACTERS; TITLE 'Matrix in file "ITS_LSU Raw Maffted 2015 0531.nexus"'; DIMENSIONS NCHAR=1564; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Capronia_semiimmersa_MUCL_15537 ------------------------------------------------ggatcattaaag-agttagggtctctctaggcccgacctcccaaccctttgtttaccttg--ctgcatgttgctttggcg-gacccgtctc--acgaccgccctggga---ccgccgagaggtgc--ccccgggcccgtgtccgccgatagccaacc----taaactcttgaatgaatcgtgtttta--tgtctgagtc-tattgattaaa---tcaaaagcaaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgcgaattgcagaattcccgtgagtcatcgaatctttgaacgcacattgcgccctttggtattccaaagggcatgcctgtccgagcgtcattatcacccctcaagccccgtgcttggtgttggacggattttggtcgtgt---aacaacgacccctcctaaagacaatgacggcggcct-gtggatcccccggtacactgagctt-ttaactgagcacgtatcgga-caagggcgcccaggacacggtccttctcctc-aaccaggaaat--ttct-tcaaggttgacctcggatcaggtaggaatacgcgctgaacttaagcatatcaataagcgcaggaaaagaaaccaacagggattgcctcagtaacggcgagtgaagcggcaacagctcaaatttgaaatctggcctcttggggtccgagttgtaatttgtagaggatgttttgggtaccgccccggtttaaatttcttggaacagaatgtcaaagagggtgagaatcccgtcttggaccggcggtagggcctgtgtaaaactccttcgacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagaactttgaaaagagagttaaacagtatgtgaaattgttgaaagggaagcgcttgcaaccagacttgagcgcgacggttcccctagccttttggctaggctactccgtcgtgtccaggccaacatcggttctgagggtcggtcaaaggccccgggaatgtacctacccacgggtagacttatagaccggggtgtcatgcggcctctcgggaccgaggaacgcgcttcggctcggatgttggcgtaatggttgtcagcgacccgtcttgaaacacggaccaaggagtctaacatctatgcgagtgtttgggtgtcaaacccggaacgcggaatgaaagtgaacggaggtaggaagcttcggctgcactatcgaccgatcctgaagtttacggatggatttgagtaagagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtataggggcgaaa----------------------------------- Cladophialophora_abundans_CBS_126736 --------------------------------------------------------------------------------------------------------------------gttgcttcggcg-ggcccgtctc--gcgaccgcccgggaga--ctgtgtcaccacgt--ccccgggcccgcgtccgccgatagcccaccacaataaactcgtgaccgaatcgtgtgtta--tgtctgaatc-tcatgatt-------ttaaacgcaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgcgaattgcagaattcccgtgagtcatcgaatctttgaacgcacattgcgccccctggtattccagagggcatgcctgttcgagcgtcattatcacccctcaagccctgtgcttggtgttggacg---caggtcggcgt--gacgccgaccccgtcccaaagacaatgacggcggccc-gtggatcccccgatacactgagctt-ccaagtgagcacgtgtcgga-caagggcgcccgggacaccgtccccttccttt----aggaaac--tctt-cagaggttgacc----------------------------------------------------------------------------------------------------------------aatctggcccccccggggtccgagttgtaatttgtagaggatgttttgggtaccgccccggtctaaatttcttggaacagaatgtcagagagggtgagaatcccgtcttgggccggcggtagggcctgtgtaaaactccttcgacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggccggagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagagttaaacagtatgtgaaattgttgaaagggaagcgcttgcaaccagacttgagcgtggcggttcccctagccttttggctcggttactccgtcatgtccaggccaacatcggttctgggggtcggttaaaggccccgggaatgtatctacccacgggtagacttatagaccggggcgtcatgcggcctctcaggaccgaggaacgcgcttcggctcggatgttggcgtaatggttgtcagcgacccg-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Cladophialophora_australiensis_CBS_112793 ----------------------------------------------aaggatcattaacg-agttagggtc-tcttaggcccgacctcccaaccctgtgtctactaaa--cctc-tgttgcttcggcg-cgcccgtctttactgaccgccggagga---ccgccgaaaggtga--cctctggccagcgcccgccgatggccaagcttaattaaactctgaacaaatcatgtctca--tgcctaagtc---ttgattaaa----taacaagtaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgcgaattgcagaattccagtgagtcatcgaatctttgaacgcacattgcgccctttggtattccgaagggcatgcctgtccgagcgtcattatcacccctcaagccccgtgcttggtgttggacgg--cctggctaggga-cccccctagcccctcctaaagataacgacggcggcctcgtggaacccccggtacactgagct--ttaactgagcacgtactggattaagggtgcccgggacacggtctcactcccttcatcgggaaaa--cttttctaaggttgacctcggatcaggtaggaatacgcgctgaacttaagcatatcaataagcggaggaaaagaaaccaacagggattgcctcagtaacggcgagtgaagcggcaatagctcaaatttgaaatctggcctcttggggtccgagttgtaatttgtagaggatgtttcgggtaccgccccggtgtaaatttcttggaacagaatgtcaaagagggtgagaatcccgtcttggaccggcggtagggcctatgtgaaactccttcgacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagagttaaacagtatgtgaaattgttgaaagggaagcgctggcaaccagacttgagcgcggcggttcccccaaccttctggttgggctactccgccgtgtccaggccaacatcggttctgggggtcggtcaaaggccctggcaatgtacctactcacgggtagacttataggccagggtgtcatgcggccacccgggaccgaggaacgcgcttcggctcggatgttggcgtaatggttgtcagcgacccgtcttgaaacacggaccaaggagtctaacaattgtgcgagtgtttgggtgtcaaacccggaacgcgtaatgaaagtgaacggaggtaggaagcttcggctgcactatcgaccgatcctgaagtttacggatggatttgagtaagagcataactgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtataggggcgaaa----------------------------------- Cladophialophora_boppii_CBS_126.86 --------------------------------------------------atcattaaagaagttagggtt-ttctaggcccgacctcccaaccctctgtttattgaa--cctc-tgttgcttcggtg-gacccgtctc--acgaccgccggggga---ccgctgcgaggcgc--cctctggccagtgtccgccgatagccaacc--tctcaaactatgaatcaatcctgtcctt-atgtctaagtc--tatgatttaaa---ttgtaagcaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgcgaattgcagaattccagtgagtcatcgaatctttgaacgcacattgcgccctttggtattccgaagggcatgcctgttcgagcgtcattatcacccctcaagcctcgtgcttgatgttggacgg--cttggtcgagc---cccctcgacccctcctaaagacaatgacggcggcct-gtggttcccccggtacactgagctt-ttaactgagcacgtatcgga-tcagggtacccgggacccggtctt-ctcctctcagtaggaaac--ttct--tcaggttgacc------------------------------------------------------------------gtattgcctcagtaacggcgagtgaagcggcaatagctcaaatttgaaatctggcctctcggggtccgagttgtaatttgtagaggatgttttgggtaccgccccggtttaaatttcttggaacagaatgtcagagagggtgagaatcccgtcttggaccgg-ggtagggcctgtgtaaaactccttcgacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagagttaaacagtatgtgaaattgttgaaagggaagcgcttgcaaccagacttgagcgcggcggttcccccagccttttggctgggctactccgtcgtgtccaggccaacatcggttctgagggtcggttaaaggccttgggaatgtatctacccacgggtagacttatagaccagggtgtcatgcggcctctcgggaccgaggaacgcgcttcggctcggatgttggcgtaatggttgtcagcgacccgtcttgaaacacggaccaaggagtctaacatctatgcgagtgtttgggtgtcaaacccggaacgcggaatgaaagtgaacggaggtaggaagcttcggctgcactatcgaccgatcctgaagtttacggaaggatttgagtaagagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtataggggcgaaa----------------------------------- Cladophialophora_carrionii_CBS_114393 ----------------------------------------------------cattaacg-agttagggtctctctaggcccgacctcccaaccctttgtttacctaaacctca-tgttgcttcggcgtgacccgtctc--acgaccgcctgggga---tcgctgcgaagcgt--ctctgggcccgtgtccgccgacagccaacc----ccaaactctggatgaatcgtgttttt--tgtctgagtc-ttgtgattaaa--tcaaaagcaaaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgcgaattgcagaattccagtgagtcatcgaatctttgaacgcacattgcgccctttggtattccaaagggcatgcctgttcgagcgtcattatcacccctcaagccccgtgcttggtgttggacgg-tcttggtcgagt---gttctcgacccctcctaaagacaatgacggcggcct-gcggatcccccggtacactgagctt-ttcaccgagcacgtatcgga-caagggcgcccaggccacggtcct-ctcctctaaccaggaaac--attt-tcaaggttgacc----------------------------------------------------------------------------------------------------------------------------------------------------------gttttgggtaccgccccggtttaaatttcttggaacagaatgtcagagagggtgagaatcccgtcttggaccggtggtagggcctgtgtaaaactccttcgacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagaactttgaaaagagagttaaacagtatgtgaaattgttgaaagggaagcgcttgcaaccagacttgagcgcgacggttcccctagccttttggctaggttactccgtcgtgtccaggccaacatcggttctgagggtcggtcaaaggctctgggaatgtatctacccacgggtagacttatagaccagggtgtcatgcgacctctcgggaccgaggaacgcgcttcggctcggatgttggcgtaatggttgtcagcgacccgtcttgaaacacggaccaaggagtctaacatctatgcgagtgtttgggtgtcaaacccggaacgcgaaatgaaagtgaacggaggtaggaagcttcggctgcactatcgaccgatcctgaagtttacggatggatttgagtaagagcatagctgttgggacccgaaagatggtgaac------------------------------------------------------------------------------------------------------------------------------------ Cladophialophora_chaetospira_CBS_114747 agaggaagtaaaagtcgtaacaaggtttccgtaggtgaacctgcggaaggatcattaacg-agttagggtc-ttctaggcccgacctcccaaccctatgtttattgaa--cctc-tgttgcttcggcg-gacccgcctc--acggccgccggagga---ccgccgcaaggcgt--cctctggccagcgtccgccgatggccaacc--acttaaactctgaatgaatcgtgtcata--tgtctaagtc--tatgattaa-----attaaagcaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgcgaattgcagaattccagtgagtcatcgaatctttgaacgcacattgcgccctttggtattccgaagggcatgcctgttcgagcgtcattatcacccctcaagccccgtgcttggtgttggacgg--cc-ggtcgag-----cgatcgacccctcctaaagacaatgacggcggcct-gtggttcccccggtacactgagctt-ttaactgagcacgtatcgga-caagggcacccgggacccggtcct-ctcctttaactaggaaac--ttct---aaggttgacctcggatcaggtaggaatacgcgctgaacttaagcatatcaataagcgcaggaaaagaaaccaacagggattacctcagtaacggcgagtgaagcggtaatagctcaaatttgaaatctggcctctcggggtccgagttgtaatttgtagaggatgttttgggtaccgccccggtctaaatttcttggaacagaatgtcaaagagggtgagaatcccgtcttggaccggcggtagggcctgtgtaaaactccttcgacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagagttaaacagtatgtgaaattgttgaaagggaagcgcttgcaaccagacttgagcgcggcggttcccccggtcttttggccgggctactccgtcgtgtccaggccaacatcggttctgagggtcggtcaaaggccttgggaatgtatctacctacgggtagacttatagaccagggtgtcatgcggcctctcgggaccgaggaacgcgcttcggctcggatgttggcgtaatggttgtcagcgacccgtcttgaaacacggaccaaggagtctaacatctatgcgagtgtttgggtgtcaaacccggaacgcgaaatgaaagtgaacggaggtaggaagcttcggctgcactatcgaccgatcctgaagtttacggatggatttgagtaagagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtataggggcgaaa----------------------------------- Cladophialophora_chaetospira_CBS_491.70 agaggaagtaaaagtcgtaacaaggtttccgtaggtgaacctgcggaaggatcattaacg-agttagggtc-ttccaggcccgacctcccaaccctatgtttattgaa--cctc-tgttgcttcggcg-gacccgcctc--acggccgccggagga---ccgctgcaaggcgt--cctctggccagcgtccgccgatggccaacc--acttaaactctgaatgaatcgtgtcata--tgtctaagtc--tatgattaa-----attaaagcaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgcgaattgcagaattccagtgagtcatcgaatctttgaacgcacattgcgccctttggtattccgaagggcatgcctgttcgagcgtcattatcacccctcaagccccgtgcttggtgttggacgg--cc-ggtcgag-----cgatcgacccctcctaaagacaatgacggcgacct-gtggttcccccggtacactgagctt-ttaactgagcacgtatcgga-caagggcacccgggacccggtcct-ctcctttaactaggaaac--ttct---aaggttgacctcggatcaggtaggaatacgcgctgaacttaagcatatcaataagcgcaggaaaagaaaccaacagggattacctcagtaacggcgagtgaagcggtaatagctcaaatttgaaatctggcctctcggggtccgagttgtaatttgtagaggatgttttgggtaccgccccggtctaaatttcttggaacagaatgtcaaagagggtgagaatcccgtcttggaccggcggtagggcctgtgtaaaactccttcgacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagagttaaacagtatgtgaaattgttgaaagggaagcgcttgcaaccagacttgagcgcggcggttcccccggtcttttggccgggctactccgtcgtgtccaggccaacatcggttctgagggtcggtcaaaggccttgggaatgtatctacctacgggtagacttatagaccagggtgtcatgcggcctctcgggaccgaggaacgcgcttcggctcggatgttggcgtaatggttgtcagcgacccgtcttgaaacacggaccaaggagtctaacatctatgcgagtgtttgggtgtcaaacccggaacgcgaaatgaaagtgaacggaggtaggaagcttcggctgcactatcgaccgatcctgaagtttacggatggatttgagtaagagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtataggg----------------------------------------- Cladophialophora_chaetospira_CBS_514.63 agaggaagtaaaagtcgtaacaaggtttccgtaggtgaacctgcggaaggatcattaacg-agttagggtc-ttctaggcccgacctcccaaccctatgtttattgaa--cctc-tgttgcttcggcg-gacccgcctc--acggccgccggagga---ccgctgcaaggcgt--cctctggccagcgtccgccgatggccaacc--acttaaactctgaatgaatcgtgtcata--tgtctaagtc--tatgattaa-----attaaagcaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgcgaattgcagaattccagtgagtcatcgaatctttgaacgcacattgcgccctttggtattccgaagggcatgcctgttcgagcgtcattatcacccctcaagccctgtgcttggtgttggatgg--cc-ggtcgag-----cgatcgacccctcctaaagacaatgacggcggcct-gtggttcccccggtacactgagctt-ttaactgagcacgtatcgga-caagggcacccgggacccggtcct-ctcctttaactaggaaac--ttct---aaggttgacctcggatcaggtaggaatacgcgctgaacttaagcatatcaataagcgcaggaaaagaaaccaacagggattacctcagtaacggcgagtgaagcggtaatagctcaaatttgaaatctggcctctcggggtccgagttgtaatttgtagaggatgttttgggtaccgccccggtctaaatttcttggaacagaatgtcaaagagggtgagaatcccgtcttggaccggcggtagggcctgtgtaaaactccttcgacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagagttaaacagtatgtgaaattgttgaaagggaagcgcttgcaaccagacttgagcgcggcggttcccccggtcttttggccgggctactccgtcgtgtccaggccaacatcggttctgagggtcggtcaaaggccttgggaatgtatctacctacgggtagacttatagaccagggtgtcatgcggcctctcgggaccgaggaacgcgcttcggctcggatgttggcgtaatggttgtcagcgacccgtcttgaaacacggaccaaggagtctaacatctatgcgagtgtttgggtgtcaaacccggaacgcgaaatgaaagtgaacggaggtaggaagcttcggctgcactatcgaccgatcctgaagtttacggatggatttgagtaagagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtataggg----------------------------------------- Cladophialophora_floridana_SR1004 --aggaagtaaaagtcgtaacaaggtttccgtaggtgaacctgcggaaggatcattaaag-agttagggtc-ccctgggcccgacctcccaaccctttgtttactgaa--cctc-tgttgcttcggcg-gacccgcctc--acggccgccggaaga---ccgcccccaggcgt--cctctggccagcgtccgccgatagccactc--tcaaaactcttgaataaatcatgttat---tgtctaagtc--tatgatgcaa-atcaataaagcaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgcgaattgcagaattccagtgagtcatcgaatctttgaacgcacattgcgccctttggtattccgaagggcatacctgttcgagcgtcattatcacccctcaagccccgtgcttggtgttggacgg--cc-ggtcgagg---cgacttgacccctcctaaagacaatgacggcggcct-gtggttcccccggtacactgagctt-ttaactgagcacgtatcgga-caagggcgcccaggacccggtcct-ctcctttgactaggaaac--ttct--caaggttgacctcggatcaggtaggaatacgcgctgaacttaagcatatcaataagcgcaggaaaagaaaccaacagggattgcctcagtaacggcgagtgaagcggcaacagctcaaatttgaaatctggcctctcggggtccgagttgtaatttgtagaggatgttttgggtaccgccccggtttaaatttcttggaacagaatgtcaaagagggtgagaatcccgtcttggaccggcggtagggcctgtgtaaaactccttcgacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagagttaaacagtatgtgaaattgttgaaagggaagcgcttgcaaccagacttgagcgcggcggttcccccagccttttggctgggctactccgtcgtgtccaggccaacatcggttctgagggtcggtcaaaggctccgggaatgtatctacccacgggtagacttatagaccggggtgtcatgcggcctctcgggaccgaggaacgcgcttcggctcggatgttggcgtaatggttgtcagcgacccgtcttgaaacacggaccaaggagtctaacatctatgcgagtgtttgggtgtcaaacccggaacgcgaaatgaaagtgaacggaggtaggaagcttcggctgcactatcgaccgatcctgaagtttacggaaggatttgagtaagagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtataggggcgaaa----------------------------------- Cladophialophora_floridana_SR3028 ---ggaagtaaaagtcgtaacaaggtttccgtaggtgaacctgcggaaggatcattaaag-agttagggtc-ccctgggcccgacctcccaaccctttgtttactgaa--cctc-tgttgcttcggcg-gacccgcctc--acggccgccggagga---ccgcccccaggcgt--cctctggccagcgtccgccgatagccactc--tcaaaactcttgaataaatcatgttat---tgtctaagtc--tatgatgcaa-atcaataaagcaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgcgaattgcagaattccagtgagtcatcgaatctttgaacgcacattgcgccctttggtattccgaagggcatacctgttcgagcgtcattatcacccctcaagccccgtgcttggtgttggacgg--cc-ggtcgagg---cgacttgacccctcctaaagacaatgacggcggcct-gYggttcccccggtacactgagctt-ttaactgagcacgtatcgga-caagggcgcccaggacccggtcct-ctcctttgactaggaaac--ttct--caaggttgacctcggatcaggtaggaatacgcgctgaacttaagcatatcaataagcgcaggaaaagaaaccaacagggattgcctcagtaacggcgagtgaagcggcaacagctcaaatttgaaatctggcctctcggggtccgagttgtaatttgtagaggatgttttgggtaccgccccggtttaaatttcttggaacagaatgtcaaagagggtgagaatcccgtcttggaccggcggtagggcctgtgtaaaactccttcgacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagagttaaacagtatgtgaaattgttgaaagggaagcgcttgcaaccagacttgagcgcggcggttcccccagccttttggctgggctactccgtcgtgtccaggccaacatcggttctgagggtcggtcaaaggctccgggaatgtatctacccacgggtagacttatagaccggggtgtcatgcggcctctcgggaccgaggaacgcgcttcggctcggatgttggcgtaatggttgtcagcgacccgtcttgaaacacggaccaaggagtctaacatctatgcgagtgtttgggtgtcaaacccggaacgcgaaatgaaagtgaacggaggtaggaagcttcggctgcactatcgaccgatcctgaagtttacggaaggatttgagtaagagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtataggggcgaaa----------------------------------- Cladophialophora_multiseptata_FMR10591 ------------------------------------------------ggatcatt-acg-agttagggtc-ttctaggcccgacctcccaaccctttgtttatcgaa--cctc-tgttgcttcggcg-gacccgtctc--acgaccgccggagga---ccgctgaaaggcgt--cctctggccagcgtccgccgatagccaaaca-cttaacattctgaatgaatcgtgtcttc--tgtctaagtc--tatgattaaa----taaaaaacaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgcgaattgcagaattccagtgagtcatcgaatctttgaacgcacattgcgccctttggtattccgaagggcatgcctgttcgagcgtcattatcacccctcaagccctgtgcttggtgttggacgg--ctaggtcgagt---aatgtcgacccctcccaaagacaatgacggcggcct-gtggttcccccggtacactgagctt-ttaactgagcacgtatcgga-caagggcacccgggacacggtcct-ctcctttagctaggaaac--ttct--caaggtt---------------------------------------------------------------------gggattgcctcagtaacggcgagtgaagcggcaatagctcaaatttgaaatctggcctctcggggtccgagttgtaatttgtagaggatgttttgggtaccgccccggtttaaatttcttggaacagaatgtcaaagagggtgagaatcccgtcttggatcggtggtagggcctatgtaaaactccttcgacgagtcgagttgtttgggaatgcagctcaaattgggtggtaaatttcatctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagagttaaacagtatgtgaaattgttgaaagggaagcgcttgcaaccagacttgagcgcggcggttcccctcgccttttggcgaggctactccgtcgtgtccaggccaacatcggttctgagggtcggttaaaggctctgggaatgtacctacccacgggtagacttatagaccagggtgtcatgcgacctcccgggaccgaggaacgcgcttcggctcggatgttggcgtaat------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Cladophialophora_potulentorum_CBS_112222 --------------------------------------------ggaaggatcattaacg-agttagggtc-ttctaggcccgacctcccaaccctgtgtttattgaa--cctt-tgttgcttcggta-ggcccgtctttatggaccgccggggga---ccgccgagaggcga--cctctggcccgtgcccgccgatagccaatc--tcaaaactcttgaataaatcgtgtctca--tgtctaagtc---ttgattaaa-----taaaagcaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgcgaattgcagaattccagtgagtcatcgaatctttgaacgcacattgcgccctttggcattccgaagggcatgcctgtccgagcgtcattatcacccctcaagccccgtgcttggtgttggacgg--cctggctaggga--ccccctagcccctcctaaagataacgacggcggcctcgtggaacccccggtacactgagcttcttaactgagcacgtatcggatcaagggcgcccgggacccggtctcactcccttcatcgggaaacactttttacaaggttgacctcggatcaggtaggaatacgcgctgaacttaagcatatcaataagcggaggaaaagaaaccaacagggattgcctcagtaacggcgagtgaagcggcaatagctcaaatttgaaatctggcctcttggggtccgagttgtaatttgtagaggatgtttcgggtaccgccccggtgtaaatttcttggaacagaatgtcatagagggtgagaatcccgtcttgaaccggtggtagggcctatgtgaaactccttcgacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagagttaaacagtatgtgaaattgttgaaagggaagcgcttgcaaccagacttgagcgcggcggttcccccagccttttggctgggctactccgccgtgtccaggccaacatcggttctgggggtcggttaaaggccctgggaatgtatctacccacgggtagacttatagcccagggtgtcatgcggcctcccgggaccgaggaacgcgcttcggctcggatgttggcgtaatggttgccagcgacccgtcttgaaacacggaccaaggagtctaacaattatgcgagtgtttgggtgtcaaacccggaacgcggaatgaaagtgaacggaggtaggaagcttcggctgcactatcgaccgatcctgaagtttacggatggatttgagtaagagcataactgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtataggggcgaaagactaatcgaaccatctggtagctggttcctgccg Cladophialophora_potulentorum_CBS_114772 ----------------------------------------------aaggatcattaacg-agttagggtc-ttctaggcccgacctcccaaccctgtgtttattgaa--cctt-tgttgcttcggta-ggcccgtctttatggaccgccggggga---ccgccgagaggcga--cctctggcccgtgcccgccgatagccaatc--tcaaaactcttgaataaatcgtgtctca--tgtctaagtc---ttgattaaa-----taaaagcaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgcgaattgcagaattccagtgagtcatcgaatctttgaacgcacattgcgccctttggcattccgaagggcatgcctgtccgagcgtcattatcacccctcaagccccgtgcttggtgttggacgg--cctggctaggga--ccccctagcccctcctaaagataacgacggcggcctcgtggaacccccggtacactgagcttcttaactgagcacgtatcggatcaagggcgcccgggacccggtctcactcccttcatcgggaaacactttttacaaggttgacctcggatcaggtaggaatacgcgctgaacttaagcatatcaataagcggaggaaaagaaaccaacagggattgcctcagtaacggcgagtgaagcggcaatagctcaaatttgaaatctggcctcttggggtccgagttgtaatttgtagaggatgtttcgggtaccgccccggtgtaaatttcttggaacagaatgtcatagagggtgagaatcccgtcttgaaccggtggtagggcctatgtgaaactccttcgacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagagttaaacagtatgtgaaattgttgaaagggaagcgcttgcaaccagacttgagcgcggcggttcccccagccttttggctgggctactccgccgtgtccaggccaacatcggttctgggggtcggttaaaggccctgggaatgtatctacccacgggtagacttatagcccagggtgtcatgcggcctcccgggaccgaggaacgcgcttcggctcggatgttggcgtaatggttgccagcgacccgtcttgaaacacggaccaaggagtctaacaattatgcgagtgtttgggtgtcaaacccggaacgcggaatgaaagtgaacggaggtaggaagcttcggctgcactatcgaccgatcctgaagtttacggatggatttgagtaagagcataactgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtataggggcgaaa----------------------------------- Cladophialophora_samoensis_CBS_259.83 --------------------------------------------------atcattaacg-agttagggtcctgcgtggcccgacctcccaaccccgtgtctaccgca--cctcatgttgcttcggcg-ggcccgtctc--acgaccgcccgcggag--atgctgcaaagtgtccccccgggcccgtgtccgccgatcgccaacca---caatactctggatgaatcgtgttcca--tgtctcagtc-ttgtgatttaa-aattcaagcaaaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgcgaattgcagaattccagtgagtcatcgaatctttgaacgcacattgcgccctctggtattccagagggcatgcctgttcgagcgtcattatcacccctcaagccccgtgcttggtgttggagggtccctggtcgaggctctacctcgacccctcctaaagacaatgacggcggcct-gtggatcccccggtacactgagctt-ctaagtgggcacgtatcgga-caagggcgcccaggacccggtcttctcctggtaatcaggaagc--ttttatcaaggttgacc-----------------------------------------------------------------------------------------------------------------aacccggcctcccggggcccgagttgtaatttgtagaggatgttttgggtaccgccccggtttaaatttcttggaacagaatgtcagagagggtgagaatcccgtcttggaccggcggtagggcctgtgtaaaactccttcgacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagaactttgaaaagagagttaaacagtatgtgaaattgttgaaagggaagcgcttgcaaccagacttgagcgcgacggttccccgagccttttggctcggttactccgtcgtgtccaggccaacatcggttctgagggtcggtcaaaggctctgggaatgtatctacccacgggtagacttatagaccagggtgtcatgcggcctctcgggaccgaggaacgcgcttcggctcggatgttggcgtaat-gttgtcagcgacccg-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Cladophialophora_tortuosa_BA4b006 ---------------------------tccgtaggtgaacctgcggaaggatcattaaag-agttagggtc-ctctgggcccgacctcccaaccctttgtttactgaa--cctc-tgttgcttcggcg-gacccgtctc--acgaccgccggagggaccgcccttccaggcgt--cctctggccagtgtccgccgactgccaacccttttaaacttctgaataaatcatgttgta--tgtctaagtc-ttatgattcaaaatcaataaagcaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgcgaattgcagaattccagtgagtcatcgaatctttgaacgcacattgcgccctttggtattccgaagggcatacctgttcgagcgtcattatcacccctcaagccccgtgcttggtgttggacgg--cctggtcgagg---ttgctcgacccctcctaaagacaatgacggcggcct-gtggttcccccggtacactgagctt-ttgactgagcacgtatcgga-cgagggcgcccagggcacggtcct-ctcctttcactaggaaac--ttttatcaaggttgacctcggatcaggtaggaatacgcgctgaacttaagcatatcaataagcgcaggaaaagaaaccaacagggattgcctcagtaacggcgagtgaagcggcaacagctcaaatttgaaatctggcctctcggggtccgagttgtaatttgtagaggatgttttgggtaccgccccggtttaaatttcttggaacagaatgtcagagagggtgagaatcccgtcttggaccggcggtagggcctgtgtaaaactccttcgacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagcactttgaaaagagagttaaacagtatgtgaaattgttgaaagggaagcgcttgcaaccagacttgagcgcggcggttcccccagccttttggctgggctactccgtcgtgtccaggccaacatcggttctgagggtcggtcaaaggctctgggaatgtatctacccacgggtagacttatagaccagggtgtcatgcggcctctcgggaccgaggaacgcgcttcggctcggatgttggcgtaatggttgtcagcgacccgtcttgaaacacggaccaaggagtctaacatctatgcgagtgtttgggtgtcaaacccggaacgcggaatgaaagtgaacggaggtaggaagcttcggctgcactatcgaccgatcctgaagtttacggatggatttgagtaagagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtata-------------------------------------------- Cladophialophora_yegresii_CBS_114405 --------------------------------------------------atcattaacg-agttagggtctttccaggcccgacctcccaaccctttgtttacctagacctct-tgttgcttcggcg-gacccgtctc--acgaccgcccgtggga--tcgccgtgaggcgt--ctccgggcccgcgtccgccgatagcccacct---caaaactctggatgaatcgtgttgtatctgtctgagtcattatgattaaa--tcaaaagcaaaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgcgaattgcagaattccagtgagtcatcgaatctttgaacgcacattgcgccctttggtattccaaagggcatgcctgttcgagcgtcattatcacccctcaagccccgtgcttggtgttggacgg-ttttggtcgagt--gtccctcgacccctcctaaagacaatgacggcggcct-gcggatcccccggtacactgagctt-ttcacggagcacgtatcgga-caagggcgcccgggccacggtcctcttcctctaaccaggaaaca-ttttctcaaggttgacc-----------------------------------------------------------------------------------------------------------------aatctggcctcccggggtccgagttgtaatttgtagaggatgttttgggtaccgccccggtctaaatttcttggaacagaatgtcaaagagggtgagaatcccgtcttggaccggcggtagggcctgtgtaaaactccttcgacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagaactttgaaaagagagttaaacagtatgtgaaattgttgaaagggaagcgcttgcaaccagacttgagcgcgacggttcccctagccttttggctaggttactccgtcgtgtccaggccaacatcggttctgagggtcggtcaaaggctctgggaatgtatctacccacgggtagacttatagaccagggtgtcatgcggcctctcgggaccgaggaacgcgcttcggctcggatgttggcgtaatggttgtcagcgacccg-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Phialophora_verrucosa_IFM_4928 ---------------------------tccgtaggtgaacctgcggaaggatcattaaag-agttagggtctctccaggcccgacctcccaaccctttgtttaccttg--ctgcatgttgctttggcg-gacccgtctc--acgaccgccctggga---ccgccgagaggtgc--ccctgggcccgtgtccgccgatagccaacc----taaactcttgaatgaatcgtgtttta--tgtctgagtc-tattgattaaa---tcaaaagcaaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgcgaattgcagaattcccgtgagtcatcgaatctttgaacgcacattgcgccctttggtattccaaagggcatgcctgtccgagcgtcattatcacccctcaagccccgtgcttggtgttggacggattttggtcgtgt---aacaacggcccctcctaaagacaatgacggcggcct-gcggatcccccggtacactgagctt-ttaactgagcacgtatcgga-caagggcgcccaggacacggtccttctcctc?aaccaggaaat--ttct-tcaaggttgacctcggatcaggtaggaatacgcgctgaacttaagcatatcaataagcggaggaaaagaaaccaacagggattgcctcagtaacggcgagtgaagcggcaacagctcaaatttgaaatctggcctctcggggtccgagttgtaatttgtagaggatgttttgggtaccgccccggtttaaatttcttggaacagaatgtcaaagagggtgagaatcccgtcttggaccggcggtagggcctgtgtaaaactccttcgacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagaactttgaaaagagagttaaacagtatgtgaaattgttgaaagggaagcgcttgcaaccagacttgagcgcgacggttcccctagccttttggctaggctactccgtcgtgtccaggccaacatcggttctgagggtcggtcaaaggccccgggaatgtacctacccacgggtagacttatagaccggggtgtcatgcggcctctcgggaccgaggaacgcgcttcggctcggatgttggcgtaatggttgtcagcgacccgtcttgaaacacggaccaaggagtctaacatctatgcgagtgtttgggtgtcaaaccc-gaacgcggaatgaaagtgaacggaggtaggaagcttcggctgcactatcgaccgatcctgaagtttacggatggatttgagtaagagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtataggggcgaaa----------------------------------- Phialophora_verrucosa_IFM_5089 ---------------------------tccgtaggtgaacctgcggaaggatcattaaag-agttagggtccctccaggcccgacctcccaaccctttgtttaccttg--ctgcatgttgctttggcg-gacccgtctc--acgaccgccctggga---ccgccgagaggtgc--ccctgggcccgtgtccgccgatagccaacc----taaactcttgaatgaatcgtgtttta--tgtctgagtc-tattgattaaa---tcaaaagcaaaaactttcaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtaatgcgaattgcagaattcccgtgagtcatcgaatctttgaacgcacattgcgccctttggtattccaaagggcatgcctgtccgagcgtcattatcacccctcaagccccgtgcttggtgttggacggattttggtcgtgt---aacaacggcccctcctaaagacaatgacggcggcct-gcggatcccccggtacactgagctt-ttaactgagcacgtatcgga-caagggcgcccaggacacggtccttctcctc?aaccaggaaat--ttct-tcaaggttgacctcggatcaggtaggaatacgcgctgaacttaagcatatcaataagcggaggaaaagaaaccaacagggattgcctcagtaacggcgagtgaagcggcaacagctcaaatttgaaatctggcctctcggggtccgagttgtaatttgtagaggatgttttgggtaccgccccggtttaaatttcttggaacagaatgtcaaagagggtgagaatcccgtcttggaccggcggtagggcctgtgtaaaactccttcgacgagtcgagttgtttgggaatgcagctcaaaatgggtggtaaatttcatctaaagctaaatattggccagagaccgatagcgcacaagtagagtgatcgaaagatgaaaagaactttgaaaagagagttaaacagtatgtgaaattgttgaaagggaagcgcttgcaaccagacttgagcgcgacggttcccctagccttttggctaggctactccgtcgtgtccaggccaacatcggttctgagggtcggtcaaaggccccgggaatgtacctacccacgggtagacttatagaccggggtgtcatgcggcctctcgggaccgaggaacgcgcttcggctcggatgttggcgtaatggttgtcagcgacccgtcttgaaacacggaccaaggagtctaacatctatgcgagtgtttgggtgtcaaaccc-gaacgcggaatgaaagtgaacggaggtaggaagcttcggctgcactatcgaccgatcctgaagtttacggatggatttgagtaagagcatagctgttgggacccgaaagatggtgaactatgcctgaatagggtgaagccagaggaaactctggtggaggctcgcagcggttctgacgtgcaaatcgatcgtcaaatttgggtataggggcgaaa----------------------------------- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1564; END; BEGIN TREES; Title 'Trees from "cladophialophora_its_lsu_0531_4.tre"'; LINK Taxa = Taxa; TRANSLATE 5 Capronia_semiimmersa_MUCL_15537, 4 Cladophialophora_abundans_CBS_126736, 16 Cladophialophora_australiensis_CBS_112793, 15 Cladophialophora_boppii_CBS_126.86, 1 Cladophialophora_carrionii_CBS_114393, 12 Cladophialophora_chaetospira_CBS_114747, 13 Cladophialophora_chaetospira_CBS_491.70, 14 Cladophialophora_chaetospira_CBS_514.63, 10 Cladophialophora_floridana_SR1004, 9 Cladophialophora_floridana_SR3028, 11 Cladophialophora_multiseptata_FMR10591, 18 Cladophialophora_potulentorum_CBS_112222, 17 Cladophialophora_potulentorum_CBS_114772, 3 Cladophialophora_samoensis_CBS_259.83, 8 Cladophialophora_tortuosa_BA4b006, 2 Cladophialophora_yegresii_CBS_114405, 6 Phialophora_verrucosa_IFM_4928, 7 Phialophora_verrucosa_IFM_5089; TREE 'PHYLIP 1+' = ((15:0.030119,(((((1:0.009964,2:0.013072)0.9470:0.005502,(3:0.036089,4:0.114037)0.4940:0.014331)0.4030:0.005772,(5:4.38E-4,(6:0.0,7:0.0)0.9950:0.003859)1.0000:0.025165)0.9420:0.018821,(8:0.009601,(9:0.0,10:7.07E-4)1.0000:0.013664)0.9950:0.0106)0.2980:0.004984,(11:0.02464,(12:7.1E-4,(13:0.00144,14:0.001441)0.5470:0.0)1.0000:0.01611)0.4320:0.0)0.2760:0.0)1.0000:0.041227,(16:0.03417,(17:0.0,18:0.0)1.0000:0.013943)1.0000:0.007289)[% ] [%unrooted = on ]; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1564; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1564; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1433112967175; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 1593582869113576466; tell It; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 3074278928388371068; mqVersion 275; checksumv 0 3 2777570659 null getNumChars 1564 numChars 1564 getNumTaxa 18 numTaxa 18 short true bits 3458764513820540943 states 15 sumSquaresStatesOnly 503842.0 sumSquares -2.2020800737990777E22 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 500; setLocation 397 17; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; endTell; end;