#NEXUS [written Fri Sep 28 19:00:46 CEST 2012 by Mesquite version 2.74 (build 550) at DSK-CROU-012/10.136.102.170] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=18; TAXLABELS Phoma.veronicicola_CBS_145.84 Phoma.acuta_phlogis_CBS_155.94 Phoma.acuta_CBS_297.51 Phoma.sydowii_CBS_385.80 Phoma.pedicularis_CBS_390.80 Leptosphaeria.doliolum_doliolum_CBS_505.75_ Phoma.acuta_errabunda_CBS_541.66_ _Phoma.acuta_var_errabunda_CBS_617.75 _Phoma.macrocapsa_CBS_640.93 Phoma.veronicicola_CBS_126583_ Phoma.acuta_acuta_CBS_504.75_ Phoma.acuta_errabunda_CBS_125978_ Phoma.acuta_phlogis_CBS_125979_ Phoma.acuta_errabunda_CBS_129999 Phoma.acuta_errabunda_CBS_129997 Phoma.acuta_acuta_CBS_130000 Phoma.acuta_errabunda_CBS_129998 Phoma.sydowii_CBS_125976_ ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=1345; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Phoma.veronicicola_CBS_145.84 atcattaccattacctcaacggggggg-tttcagctgtttattcagccg-attcccgcttgtttgacgttacccatgcctttttgcgtacagtttgttttcccagcagggcattcttgcccctacgggatatcaatccaccca-tgtatttgcagtcaatgtctg-aaaattataataattacaacttttaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccatggggcatgcctgttcgagcgtcatttgtaccctcaagctctgcttggtgttgggtgtttgtccgcg--tttcacgcagactcgccttaaatcaattggcagccggcatgttagcctggagcgcagcacattttgcgcaccttgctggcggtgttggcccccatcaagtccatatatttgctcttgacctcggatcaggtagggatacccggtgacgatgcgccccgtgcagtcttccgtaagtttctcc------------cctgccatctggcctatagaggccgcctcacgtgcggacttccgccgccct-gagagctccagagaaccacaactgaccctctcgcagcttccatcgttggccgaccgcgccatcatgggtacgatgcgcccttcccccagctccctagtgactacgaactgacagcgtggcagtatcatgatcggtcgtaagttgcactccatctgcacgcgacgaggcgagagctgacaagacttagggtaaccaaatcggtgccgccttctggcaaaccatctcaggcgagcacggcctcgacggctccggtgtctacaatggcacttcagatcttcagctcgagcgcatgaacgtctacttcaatgaggtgcgcattctttttcgcgaaggtcatgtgacctgtgaatgctaacaagcgacaggcgtctggcaacaagttcgttccccgtgccgtccttgttgatctcgagcccggtaccatggacgctgttcgcgctggtcccttcggacagctcttccgtcccatcgtggtttgcgtcgtcagcgatgggcgtgccaagattaacccgcgtacaagggccgtcttagcggcactcggtgtctaccaggacggcattgcaaagcagcaagtcaacggcaaggatgtgacggcccatatttacgagtacaccactcaaatgaccctcgacatcaagaagggtgtcgttggcgtcaaaaagggcaacacccctgttcaaatgctgttctgtctcaaggagaagaatcagaagaagat Phoma.acuta_phlogis_CBS_155.94 atcattaccattacctcaacggggggg-tttcagctgtttattcagccg-attcccgcttgtttgacgttacccatgcctttttgcgtacagtttgttttcccagcagggcatttttgcccctatgggatatcaatccaccca-tgtatttgcagtcaatgtctg-aaaattataataattacaacttttaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccatggggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggtgtttgtccgcg--ttttgcgcagactcgccttaaatcaattggcagccggcatgttagcctggagcgcagcacattttgcgcaccttgctggcggtgttggcccccatcaagtccatatatttgctcttgacctcggatcaggtagggatacccggtgacgatgcgccccgtgcagtcttccgtaagtttctcc------------cctgccatccggcctcccgaggctgcctcacgtgcggagttccgctgctct-gagagttccagagaaccacgactgacccgctcgcagcttccatcgttggccgaccgcgccatcatgggtacgatgcgcccttctcctagctccctaaagactgcgaactgacagcgtggcagtatcatgatcggtcgtaagttgcactccatctgcacgcgacgaggcgagagctgacaacagttagggtaaccaaatcggtgccgccttctggcaaaccatctcaggcgagcacggcctcgacggctccggtgtctacaatggcacttcggatctccagctcgagcgcatgaacgtctacttcaatgaggtgcgcattctttttcgctagtgtcatgtgacccgtgaatgctaacaagcgacaggcgtccggcaacaagttcgttccccgtgccgtcctcgtcgatctcgagcccggtaccatggacgctgtccgcgctggtcctttcggacagctcttccgtcccatcgtggtttgcgtcgtcagcgatgggcgtgccaagattaacccgcgtacaagggccgtcttagcggcactcggtgtctaccaggacggcattgcaaaacagcaagtcaacggcaaggatgtgacggcccatatttacgagtacaccactcagatgacactcgacatcaagaagggtgtcgttggcgtgaaaaagggcaacacccctgtccagatgctcttctgtctcaaggaaaagaatcagaagaagat Phoma.acuta_CBS_297.51 atcattaccattacctcaacggggggg-tttcggccgtgtattcggctg-attcccgcctgtttgacgttacccatgcctttttgcgtacagtttgttttcccagcagggcacttgtgcccctacgggatatcaatccacccattgtatttgcagtccatgtctg-aaaattataataattacaacttttaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccatggggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggtgattgtccgcg--tctgacgcagactcgccttaaatcaattggcagccggcatgttagcctggagcgcagcacattttgcgcaccttgctggcggtgttggcccccatcaagtccatatatttgctcttgacctcggatcaggtagggatacccggtgacgatgcgccccgtgcagtcttccgtaagtttctcccctgccatctggcctgccatctggcctaccgaggccgcctcacgtgcggactttcgctgccct-gagagctccagagaaccgcgactgacccgctcgcagcttccatcgttggccgaccgcgccatcatgggtacgacgcgcccttcccccagctccctagtgactgcgaactgacagcgtggcagtatcatgatcggtcgtaagttgcacttcatctgcacgcgacgaggcgagagctgacaacagttagggtaaccaaatcggtgccgccttctggcaaaccatctcaggcgagcacggcctcgacggctccggtgtctacaatggcacttcggatctccagcttgagcgcatgaacgtctacttcaatgaggtgcgcattctttttcgcgaatgtcatgtgacccgtaaatgctaacaagcgacaggcgtccggcaacaagttcgttccccgtgccgtcctcgtcgatctcgagcccggtaccatggacgctgtccgcgctggtcccttcggacagctcttccgtcccatcgtggtttgcgtcgtcagcgatgggcgtgccaagattaacccgcgtacaagggccgtcttagcggcactcggtgtctaccaggacggcattgcaaagcagcaagttaacggcaaggatgtgacagcccatatttacgagtacaccactcagatgaccctcgatatcaagaagggtgtcgttggcgtcaagaagggcaacactcctgtccagatgctgttctgtctcaaggagaagaatcagaagaagat Phoma.sydowii_CBS_385.80 atcattaccattacctcaacggggggg-tttcggccgtgtattcggctg-attcccgcctgtttgacgttacccatgcctttttgcgtacagtttgttttcccagcagggcacttgtgcccctacgggatatcaatccacccattgtatttgcagtccatgtctg-aaaattataataattacaacttttaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccatggggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggtgattgtccgcg--tctgacgcagactcgccttaaatcaattggcagccggcatgttagcctggagcgcagcacattttgcgcaccttgctggcggtgttggcccccatcaagtccatatatttgctcttgacctcggatcaggtagggatacccggtgacgatgcgccccgtgcagtcttccgtaagtttctcccctgccatctggcctgccatctggcctaccgaggccgcctcacgtgcggacttccgctgccct-gagagctccagagaaccgcgactgacccgctcgcagcttccatcgttggccgaccgcgccatcatgggtacgacgcgcccttcccccagctccctagtgactgcgaactgacagcgtggcagtatcatgatcggtcgtaagttgcacttcatctgcacgcgacgaggcgagagctgacaacagttagggtaaccaaatcggtgccgccttctggcaaaccatctcaggcgagcacggcctcgacggctccggtgtctacaatggcacttcggatcttcagcttgagcgcatgaacgtctacttcaatgaggtgcgcattctttttcgcgaatgtcatgtgaccagtaaatgctaacaagcgacaggcgtccggcaacaagttcgttccccgtgccgtcctcgtcgatctcgagcccggtaccatggacgctgtccgcgctggtcccttcggacagctcttccgtcccatcgtggtttgcgtcgtcagcgatgggcgtgccaagattaacccgcgtacaagggccgtcttagcggcactcggtgtctaccaggacggcattgcaaagcagcaagtcaacggcaaggatgtgacggcccatatttacgagtacaccactcagatgaccctcgatatcaagaagggtgtcgttggcgtcaagaagggcaacactcctgtgcagatgctgttctgtctcaaggagaagaaccagaagaagat Phoma.pedicularis_CBS_390.80 atcattaccattacctcaacgggcggg-tttc--------cttaaaccg-attcctgcctgtttgaagttacccatgcc-ttttgcgtacaatttgttctcctagaagggcgtcttcgccccgacaggataccaagtcaccca-tgtatttgcagtcaacgtctg-aaaacaataataattacaacttttaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccatggggcatgcctgttcgagcgtcatttgtaccctcaagctctgcttggtgttgggtgtttgtcccgcgcatttgcgcagactcgccttaaaacaattggcagccggcatgatagcctggagcgcagcacattttgcgtctctttgttagcttgttggcccccatcaagaccatatatttgctcttgacctcggatcaggtagggatacccggtgacgatgcgccccgtgcagtcttccgtaagtcttccc------------attcctatccggctagctgaggccgcctcacgtgcgagaatccgcagccctcgagggctccagagaaccaagactgacccgaccgcagcttccatcgttggccgaccgcgccatcatgggtacgatgcgcccttcccacagctctcttgtgactgcgagctgacaccgtggcagtatcatgatcggtcgtaagttgcactcgatccccacgcgacgagacaagagctgacaacatttagggtaaccaaatcggtgccgccttctggcaaaccatctcaggcgagcacggcctcgacggctccggtgtctacaatggcacgtcggatctccagctcgagcgcatgaacgtctacttcaacgaggtgcgcattctctgccgcgaagatcatgtgacctgtgaatgctgacaagtggcaggcgtccggcaacaagttcgttccccgtgccgtcctcgtcgatctcgagcccggtaccatggacgctgtccgcgctggtcccttcggacagctcttccgtcccattgtggtgtgcgtcgtcagcgatggccgcgccaagattaacccgcgtacaagggccgtcttagcggcactcggtgtctaccaggacggcattgcaaagcagcaggtcaacggcaaggatgtgacggcccatatttacgagtacactactcagatgactctggacatcaagaagggtgttgttggcgtgaagaagggcaacacccctgtccagatgctgttctgtctcaaggagaagaatcagaagaagat Leptosphaeria.doliolum_doliolum_CBS_505.75_ atcattaccattacctcaacggggggg-tttcagctgtttattcagccg-attcccgcttgtttgacgttacccatgcctttttgcgtacagtttgttttcccagcagggcattcttgcccctacgggatatcaatccaccca-tgtatttgcagtcaatgtctg-aaaattataataattacaacttttaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccatggggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggtgtttgtccgcg--ttttgcgcagactcgccttaaatcaattggcagccggcatgttagcctggagcgcagcacattttgcgcaccttgctggcggtgttggcccccatcaagtccatatatttgctcttgacctcggatcaggtagggatacccggtgacgatgcgccccgtgcagtcttccgtaagtttctcc------------cctgccatccggcctcccgaggctgcctcacgtgcggagttccgctgctct-gagagctccagagaaccacgactgacccgctcgcagcttccatcgttggccgaccgcgccatcatgggtacgatgcgcccttctcctagctccctagtgactgcgaactgacagcgtggcagtatcatgatcggtcgtaagttgcactccatctgcacgcgacgaggcgagagctgacaacagttagggtaaccaaatcggtgccgccttctggcaaaccatctcaggcgagcacggcctcgacggctccggtgtctacaatggcacttcggatctccagctcgagcgcatgaacgtctacttcaatgaggtgcgcattctttttcgccagtgtcatgtgacccgtgaatgctaacaagcgataggcgtccggcaacaagttcgttccccgtgccgtcctcgtcgatctcgagcccggtaccatggacgctgtccgcgctggtcctttcggacagctcttccgtcccatcgtggtttgcgtcgtcagcgatgggcgtgccaagattaacccgcgtacaagggccgtcttagcggcactcggtgtctaccaggacggcattgcaaagcagcaagtcaacggcaaggatgtgacggcccatatttacgagtacaccactcagatgacactcgacatcaagaagggtgtcgttggcgttaaaaagggcaacacccctgttcaaatgctcttctgtctcaaggagaagaaccagaagaagat Phoma.acuta_errabunda_CBS_541.66_ atcattaccattacctcaacggggggg-tttcagctgtttattcagccg-attcccgcttgtttgacgttacccatgcctttttgcgtacagtttgttttcccagcagggcattcttgcccctacgggatatcaatccaccca-tgtatttgcagtcaatgtctg-aaaattataataattacaacttttaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccatggggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggtgtttgtccgcg--ttttgcgcagactcgccttaaatcaattggcagccggcatgttagcctggagcgcagcacattttgcgcaccttgctggcggtgttggcccccatcaagtccatatatttgctcttgacctcggatcaggtagggatacccggtgacgatgcgccccgtgcagtcttccgtaagtttctcc------------cctgccatccggcctcccgaggctgcctcacgtgcggagttccgctgctct-gagagctccagagaaccacgactgacccgctcgcagcttccatcgttggccgaccgcgccatcatgggtacgatgcgcccttctcctagctccctagtgactgcgaactgacagcgtggcagtatcatgatcggtcgtaagttgcactccatctgcacgcgacgaggcgagagctgacaacagttagggtaaccaaatcggtgccgccttctggcaaaccatctcaggcgagcacggcctcgacggctccggtgtctacaatggcacttcggatctccagctcgagcgcatgaacgtctacttcaatgaggtgcgcattctttttcgccagtgtcatgtgacccgtgaatgctaacaagcgacaggcgtccggcaacaagttcgttccccgtgccgtcctcgtcgatctcgagcccggtaccatggacgctgtccgcgctggtcctttcggacagctcttccgtcccatcgtggtttgcgtcgtcagcgatgggcgtgccaagattaacccgcgtacaagggccgtcttagcggcactcggtgtctaccaggacggcattgcaaagcagcaagtcaacggcaaggatgtgacggcccatatttacgagtacaccactcagatgacactcgacatcaagaagggtgtcgttggcgtaaaaaagggcaacacccctgttcaaatgctcttctgtctcaaggagaagaaccagaagaagat _Phoma.acuta_var_errabunda_CBS_617.75 atcattaccattacctcaacgggggggagttcagcagtgtattcggctgaactcccgcctgattgacgttacccatgtctttttgcgtacagtttgttttcccagcagggcctttgtgcccctacgggatatcaatccaccct-tgaatttgcagtccatgtctgaaaaataataataattacaacttttaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccatggggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggtgattgtccgcgctttttgcgcagactcgccttaaatcaattggcagccggcatgttagcctggagcgcagcacattttgcgcaccttgctggcggtgttggcccccatcaagtccatatatttgctcttgacctcggatcaggtagggatacccggtgacgatgcgccccgtgcagtcttccgtaagtttctcc------------cctgccatctggcctacagaggctgcctcac-----gaatcccgccgccct-gagagctccagagaaccacgactaaccagctcgcagcttccatcgttggccgaccgcgccatcatgggtacgatgcgcccttcccccagctccctagtgactgcgaactgacagcgtggcagtatcatgatcggccgtaagttgcactccatctgcacgcgacgaggcgagagctgacaacagttagggtaaccaaatcggtgccgccttctggcaaaccatctcaggcgagcacggcctcgacggctccggtgtctacaatggcacttcggatctccagctcgagcgcatgaacgtctacttcaatgaggtgcgcattctttttcgcgaatgtcatgtgacccgtgattgctaacaagcgacaggcgtccggcaacaagttcgttccccgtgccgtcctcgtcgatctcgagcccggtaccatggacgctgtccgcgctggtcctttcggacagcttttccgtcccatcgtggtttgcgtcgtcagcgatgggcgtgccaagattaacccgcgtacaagggccgtcttagcggcactcggtgtctaccaggacggcattgcaaagcagcaagtcaacggcaaggatgtgacggcccatatttacgagtacaccactcagatgaccctggacatcaagaagggtgtcgtcggtgtcaagaagggcaacacccctgttcaaatgctcttctgtctcaaggagaagaatcagaagaagat _Phoma.macrocapsa_CBS_640.93 atcattaccattacctcaacgggggggagttcagcagtgtattcggctgaactcccgcctgattgacgttacccatgtctttttgcgtacagtttgttttcccagcagggcctttgtgcccctacgggatatcaatccaccct-tgaatttgcagtccatgtctgaaaaataataataattacaacttttaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccatggggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggtgattgtccgcgctttttgcgcagactcgccttaaatcaattggcagccggcatgttagcctggagcgcagcacattttgcgcaccttgctggcggtgttggcccccatcaagtccatatatttgctcttgacctcggatcaggtagggatacccggtgacgatgcgccccgtgcagttttccgtaagtttctcc------------cctgccatctggcctacagaggctgcctcacgtgcggagttccgccgccct-gagagctccagagaaccacgactaacccgctcgcagcttccatcgttggccgaccgcgccatcatgggtacgatgcgccctccccccagctccctagtgactgcgaactgacagcgtggcagtatcatgattggccgtaagttgcactccatctgcacgcgacgaggcgagagctgacaacagttagggtaaccaaatcggtgccgccttctggcaaaccatctcaggcgagcacggcctcgacggctccggtgtctacaatggcacttcggatctccagctcgagcgcatgaacgtctacttcaatgaggtgcgcattctttttcgcgaatgtcatgtgacccgtgattgctaacaagcgacaggcgtccggcaacaagttcgttccccgtgccgtcctcgtcgatctcgagcccggtaccatggacgctgtccgcgctggtcctttcggacagcttttccgtcccatcgtggtttgcgtcgtcagcgatgggcgtgccaagattaacccgcgtacaagggccgtcttagcggcactcggtgtctaccaggacggcattgcaaagcagcaagtcaacggcaaggatgtgacggcccatatttacgagtacaccactcagatgaccctggacatcaagaagggtgtcgtcggtgtcaagaagggcaacacccctgttcaaatgctcttctgtctcaaggagaagaatcagaagaagat Phoma.veronicicola_CBS_126583_ atcattaccattacctcaacggggggg-tttcagctgtttattcagccg-attcccgcttgtttgacgttacccatgcctttttgcgtacagtttgttttcccaacagggcattcttgcccctacgggatatcaatccaccca-tgtatttgcagtcaatgtctg-aaaattataataattacaacttttaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccatggggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggtgtttgtccgcg--ttttacgcagactcgccttaaatcaattggcagccggcatgttagcctggagcgcagcacattttgcgcaccttgctggcggtgttggcccccatcaagtccatatatttgctcttgacctcggatcaggtagggatacccggtgacgatgcgccccgtgcagtcttccgtaagtttctcc------------cctgccatctggcctatagaggccgcctcacgtgcggacttccgccgccct-gagagctccagagaaccacaactgaccctctcgcagcttccatcgttggccgaccgcgccatcatgggtacgatgcgcccttcccccagctccctagtgactacgaactgacagcgtggcagtatcatgatcggtcgtaagttgcactccatctgcacgcgacgaggcgagagctgacaagacttagggtaaccaaatcggtgccgccttctggcaaaccatctcaggcgagcacggcctcgacggctccggtgtctacaatggcacttcagatcttcagctcgagcgcatgaacgtctacttcaatgaggtgcgcattctttttcgcgaaggtcatgtgacctgtgaatgctaacaagcgacaggcgtctggcaacaagttcgttccccgtgccgtccttgttgatctcgagcccggtaccatggacgctgttcgcgctggtcccttcggacagctcttccgtcccatcgtggtttgcgtcgtcagcgatgggcgtgccaagattaacccgcgtacaagggccgtcttagcggcactcggtgtctaccaggacggcattgcaaagcagcaagtcaacggcaaggatgtgacggcccatatttacgagtacaccactcaaatgaccctcgacatcaagaagggtgtcgttggcgtcaaaaagggcaacacccctgttcaaatgctgttctgtctcaaggagaagaatcagaagaagat Phoma.acuta_acuta_CBS_504.75_ atcattaccattacctcaacggggggg-tttcagctgtttattcagccg-attcccgcttgtttgacgttacccatgcctttttgcgtacagtttgttttcccagcagggcattcttgcccctacgggatatcaatccaccca-tgtatttgcagtcaatgtctg-aaaattataataattacaacttttaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccatggggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggtgtttgtccgcg--ttttgcgcagactcgccttaaatcaattggcagccggcatgttagcctggagcgcagcacattttgcgcaccttgctggcggtgttggcccccatcaagtccatatatttgctcttgacctcggatcaggtagggatacccggtgacgatgcgccccgtgcagtcttccgtaagtttctcc------------tctgccatccggcctcccgaggctgcctcacgtgcggagttccgctgctct-gagagctccagagaaccacgactgacccgctcgcagcttccatcgttggccgaccgcgccatcatgggtacgatgcgcccttctcctagctccctagtgactgcgaactgacagcgtggcagtatcatgatcggtcgtaagttgcactccatctgcacgcgacgaggcgagagctgacaacagttagggtaaccaaatcggtgctgccttctggcaaaccatctcaggcgagcacggcctcgacggctccggtgtctacaatggcacttcggatctccagctcgagcgcatgaacgtctacttcaatgaggtgcgcattctttttcgccagtgtcatgtgacccgtgaatgctaacaagcgacaggcgtccggcaacaagttcgttccccgtgccgtcctcgtcgatctcgagcccggtaccatggacgctgtccgcgctggtcctttcggacagctcttccgtcccatcgtggtttgcgtcgtcagcgatgggcgtgccaagattaacccgcgtacaagggccgtcttagcggcactcggtgtctaccaggacggcattgcaaaacagcaagtcaacggcaaggatgtgacggcccatatttacgagtacaccactcagatgacgctcgacattaagaagggtgtcgttggcgtgaaaaagggcaacacccctgttcagatgctcttctgtctcaaggagaagaaccagaagaagat Phoma.acuta_errabunda_CBS_125978_ atcattaccattacctcaacgggggggagttcagcagtgtattcggctgaactcccgcctgattgacgttacccatgtctttttgcgtacagtttgttttcccagcagggcctttgtgcccctacgggatatcaatccaccct-tgaatttgcagtccatgtctgaaaaataataataattacaacttttaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccatggggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggtgattgtccgcgctttttgcgcagactcgccttaaatcaattggcagccggcatgttagcctggagcgcagcacattttgcgcaccttgctggcggtgttggcccccatcaagtccatatatttgctcttgacctcggatcaggtagggatacccggtgacgatgcgccccgtgcagtcttccgtaagtttctcc------------cctgccatctggcctacagaggctgcctcac-----gaatcccgccgccct-gagagctccagagaaccacgactaacccgctcgcagcttccatcgttggccgaccgcgccatcatgggtacgatgcgcccttcccccagctccctagtgactgcgaactgacagcgtggcagtatcatgatcggccgtaagttgcactccatctgcacgcgacgaggcgagagctgacaacagttagggtaaccaaatcggtgccgccttctggcaaaccatctcaggcgagcacggcctcgacggctccggtgtctacaatggcacttcggatctccagctcgagcgcatgaacgtctacttcaatgaggtgcgcattctttttcgcgaatgtcatgtgacccgtgattgctaacaagcgacaggcgtccggcaacaagttcgttccccgtgccgtcctcgtcgatctcgagcccggtaccatggacgctgtccgcgctggtcctttcggacagcttttccgtcccatcgtggtttgcgtcgtcagcgatgggcgtgccaagattaacccgcgtacaagggccgtcttagcggcactcggtgtctaccaggacggcattgcaaagcagcaagtcaacggcaaggatgtgacggcccatatttacgagtacaccactcagatgaccctggacatcaagaagggtgtcgtcggtgtcaagaagggcaacacccctgttcaaatgctcttctgtctcaaggagaagaatcagaagaagat Phoma.acuta_phlogis_CBS_125979_ atcattaccattacctcaacggggggg-tttcagctgtttattcagccg-attcccgcttgtttgacgttacccatgcctttttgcgtacagtttgttttcccagcagggcattcttgcccctacgggatatcaatccaccca-tgtatttgcagtcaatgtctg-aaaattataataattacaacttttaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccatggggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggtgtttgtccgcg--ttttgcgcagactcgccttaaatcaattggcagccggcatgttagcctggagcgcagcacattttgcgcaccttgctggcggtgttggcccccatcaagtccatatatttgctcttgacctcggatcaggtagggatacccggtgacgatgcgccccgtgcagtcttccgtaagtttctcc------------cctgccatccggcctcccgaggctgcctcacgtgcggagttccgctgctct-gagagctccagagaaccacgactgacccgctcgcagcttccatcgttggccgaccgcgccatcatgggtacgatgcgcccttctcctagctccctagtgactgcgaactgacagcgtggcagtatcatgatcggtcgtaagttgcactccatctgcacgcgacgaggcgagagctgacaacagttagggtaaccaaatcggtgccgccttctggcaaaccatctcaggcgagcacggcctcgacggctccggtgtctacaatggcacttcggatctccagctcgagcgcatgaacgtctacttcaatgaggtgcgcattctttttcgctagtgtcatgtgacccgtgaatgctaacaagcgacaggcgtccggcaacaagttcgttccccgtgccgtcctcgtcgatctcgagcccggtaccatggacgctgtccgcgctggtcctttcggacagctcttccgtcccatcgtggtttgcgtcgtcagcgatgggcgtgccaagattaacccgcgtacaagggccgtcttagcggcactcggtgtctaccaggacggcattgcaaaacagcaagtcaacggcaaggatgtgacggcccatatttacgagtacaccactcagatgacgctcgacattaagaagggtgtcgttggcgtgaaaaagggcaacacccctgttcagatgctcttctgtctcaaggagaagaaccagaagaagat Phoma.acuta_errabunda_CBS_129999 atcattaccattacctcaacgggggggagttcagcagtgtattcggctgaactcccgcctgattgacgttacccatgtctttttgcgtacagtttgttttcccagcagggcctttgtgcccctacgggatatcaatccaccct-tgaatttgcagtccatgtctgaaaaataataataattacaacttttaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccatggggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggtgattgtccgcgctttttgcgcagactcgccttaaatcaattggcagccggcatgttagcctggagcgcagcacattttgcgcaccttgctggcggtgttggcccccatcaagtccatatatttgctcttgacctcggatcaggtagggatacccggtgacgatgcgccccgtgcagtcttccgtaagtttctcc------------cctgccatctggcctacagaggctgcctcac-----gaatcccgccgccct-gagagctccagagaaccacgactaacccgctcgcagcttccatcgttggccgaccgcgccatcatgggtacgatgcgcccttcccccagctccctagtgactgcgaactgacagcgtggcagtatcatgatcggccgtaagttgcactccatctgcacgcgacgaggcgagagctgacaacagttagggtaaccaaatcggtgccgccttctggcaaaccatctcaggcgagcacggcctcgacggctccggtgtctacaatggcacttcggatctccagctcgagcgcatgaacgtctacttcaatgaggtgcgcattctttttcgcgaatgtcatgtgacccgtgattgctaacaagcgacaggcgtccggcaacaagttcgttccccgtgccgtcctcgtcgatctcgagcccggtaccatggacgctgtccgcgctggtcctttcggacagcttttccgtcccatcgtggtttgcgtcgtcagcgatgggcgtgccaagattaacccgcgtacaagggccgtcttagcggcactcggtgtctaccaggacggcattgcaaagcagcaagtcaacggcaaggatgtgacggcccatatttacgagtacaccactcagatgaccctagacatcaagaagggtgtcgtcggtgtcaagaagggcaacacccctgttcaaatgctcttctgtctcaaggagaagaatcagaagaagat Phoma.acuta_errabunda_CBS_129997 atcattaccattacctcaacgggggggagttcagcagtgtattcggctgaactcccgcctgattgacgttacccatgtctttttgcgtacagtttgttttcccagcagggcctttgtgcccctacgggatatcaatccaccct-tgaatttgcagtccatgtctgaaaaataataataattacaacttttaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccatggggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggtgattgtccgcgctttttgcgcagactcgccttaaatcaattggcagccggcatgttagcctggagcgcagcacattttgcgcaccttgctggcggtgttggcccccatcaagtccatatatttgctcttgacctcggatcaggtagggatacccggtgacgatgcgccccgtgcagtcttccgtaagtttctcc------------cctgccatctggcctacagaggctgcctcac-----gaatcccgccgccct-gagagctccagagaaccacgactaacccgctcgcagcttccatcgttggccgaccgcgccatcatgggtacgatgcgcccttcccccagctccctagtgactgcgaactgacagcgtggcagtatcatgatcggccgtaagttgcactccatctgcacgcgacgaggcgagagctgacaacagttagggtaaccaaatcggtgccgccttctggcaaaccatctcaggcgagcacggcctcgacggctccggtgtctacaatggcacttcggatctccagctcgagcgcatgaacgtctacttcaatgaggtgcgcattctttttcgcgaatgtcatgtgacccgtgattgctaacaagcgacaggcgtccggcaacaagttcgttccccgtgccgtcctcgtcgatctcgagcccggtaccatggacgctgtccgcgctggtcctttcggacagcttttccgtcccatcgtggtttgcgtcgtcagcgatgggcgtgccaagattaacccgcgtacaagggccgtcttagcggcactcggtgtctaccaggacggcattgcaaagcagcaagtcaacggcaaggatgtgacggcccatatttacgagtacaccactcagatgaccctggacatcaagaagggtgtcgtcggtgtcaagaagggcaacacccctgttcaaatgctcttctgtctcaaggagaagaatcagaagaagat Phoma.acuta_acuta_CBS_130000 atcattaccattacctcaacggggggg-tttcagctgtttattcagccg-attcccgcttgtttgacgttacccatgcctttttgcgtacagtttgttttcccagcagggcattcttgcccctacgggatatcaatccaccca-tgtatttgcagtcaatgtctg-aaaattataataattacaacttttaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccatggggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggtgtttgtccgcg--ttttgcgcagactcgccttaaatcaattggcagccggcatgttagcctggagcgcagcacattttgcgcaccttgctggcggtgttggcccccatcaagtccatatatttgctcttgacctcggatcaggtagggatacccggtgacgatgcgccccgtgcagtcttccgtaagtttctcc------------tctgccatccggcctcccgaggctgcctcacgtgcggagttccgctgctct-gagagctccagagaaccacgactgacccgctcgcagcttccatcgttggccgaccgcgccatcatgggtacgatgcgcccttctcctagctccctagtgactgcgaactgacagcgtggcagtatcatgatcggtcgtaagttgcactccatctgcacgcgacgaggcgagagctgacaacagttagggtaaccaaatcggtgctgccttctggcaaaccatctcaggcgagcacggcctcgacggctccggtgtctacaatggcacttcggatctccagctcgagcgcatgaacgtctacttcaatgaggtgcgcattctttttcgccagtgtcatgtgacccgtgaatgctaacaagcgacaggcgtccggcaacaagttcgttccccgtgccgtcctcgtcgatctcgagcccggtaccatggacgctgtccgcgctggtcctttcggacagctcttccgtcccatcgtggtttgcgtcgtcagcgatgggcgtgccaagattaacccgcgtacaagggccgtcttagcggcactcggtgtctaccaggacggcattgcaaaacagcaagtcaacggcaaggatgtgacggcccatatttacgagtacaccactcagatgacgctcgacattaagaagggtgtcgttggcgtgaaaaagggcaacacccctgttcagatgctcttctgtctcaaggagaagaaccagaagaagat Phoma.acuta_errabunda_CBS_129998 atcattaccattacctcaacgggggggagttcagcagtgtattcggctgaactcccgcctgattgacgttacccatgtctttttgcgtacagtttgttttcccagcagggcctttgtgcccctatgggatatcaatccaccct-tgaatttgcagtccatgtctgaaaaataataataattacaacttttaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccatggggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggtgattgtccgcgctttttgcgcagactcgccttaaatcaattggcagccggcatgttagcctggagcgcagcacattttgcgcaccttgctggcggtgttggcccccatcaagtccatatatttgctcttgacctcggatcaggtagggatacccggtgacgatgcgccccgtgcagtcttccgtaagtttctcc------------cctgccatctggcctacagaggctgcctcac-----gaatcccgccgccct-gagagctccagagaaccacgactaacccgctcgcagcttccatcgttggccgaccgcgccatcatgggtacgatgcgcccttcccccagctccctagtgactgcgaactgacagcgtggcagtatcatgatcggccgtaagttgcactccatctgcacgcgacgaggcgagagctgacaacagttagggtaaccaaatcggtgccgccttctggcaaaccatctcaggcgagcacggcctcgacggctccggtgtctacaatggcacttcggatctccagctcgagcgcatgaacgtctacttcaatgaggtgcgcattctttttcgcgaatgtcatgtgacccgtgattgctaacaagcgacaggcgtccggcaacaagttcgttccccgtgccgtcctcgtcgatctcgagcccggtaccatggacgctgtccgcgctggtcctttcggacagcttttccgtcccatcgtggtttgcgtcgtcagcgatgggcgtgccaagattaacccgcgtacaagggccgtcttagcggcactcggtgtctaccaggacggcattgcaaagcagcaagtcaacggcaaggatgtgacggcccatatttacgagtacaccactcagatgaccctggacatcaagaagggtgtcgtcggtgtcaagaagggcaacacccctgttcaaatgctcttctgtctcaaggagaagaatcagaagaagat Phoma.sydowii_CBS_125976_ atcattaccattacctcaacggggggg-tttcggccgtgtattcggctg-attcccgcctgtttgacgttacccatgcctttttgcgtacagtttgttttcccagcagggcacttgtgcccctacgggatatcaatccacccattgtatttgcagtccatgtctg-aaaattataataattacaacttttaacaacggatctcttggttctggcatcgatgaagaacgcagcgaaatgcgataagtagtgtgaattgcagaattcagtgaatcatcgaatctttgaacgcacattgcgccccttggtattccatggggcatgcctgttcgagcgtcatttgtaccctcaagctttgcttggtgttgggtgattgtccgcg--tctgacgcagactcgccttaaatcaattggcagccggcatgttagcctggagcgcagcacattttgcgcaccttgctggcggtgttggcccccatcaagtccatatatttgctcttgacctcggatcaggtagggatacccggtgacgatgcgccccgtgcagtcttccgtaagtttctcccctgccatctggcctgccatctggcctaccgaggccgcctcacgtgcggacttccgctgccct-gagagctccagagaaccgcgactgacccgctcgcagcttccatcgttggccgaccgcgccatcatgggtacgacgcgcccttcccccagctccctagtgactgcgaactgacagcgtggcagtatcatgatcggtcgtaagttgcacttcatctgcacgcgacgaggcgagagctgacaacagttagggtaaccaaatcggtgccgccttctggcaaaccatctcaggcgagcacggcctcgacggctccggtgtctacaatggcacttcggatctccagcttgagcgcatgaacgtctacttcaatgaggtgcgcattctttttcgcgaatgtcatgtgacccgtaaatgctaacaagcgacaggcgtccggcaacaagttcgttccccgtgccgtcctcgtcgatctcgagcccggtaccatggacgctgtccgcgctggtcccttcggacagctcttccgtcccatcgtggtttgcgtcgtcagcgatgggcgtgccaagattaacccgcgtacaagggccgtcttagcggcactcggtgtctaccaggacggcattgcaaagcagcaagttaacggcaaggatgtgacagcccatatttacgagtacaccactcagatgaccctcgacatcaagaagggtgtcgttggcgtcaagaagggcaacactcctgtccagatgctgttctgtctcaaggagaagaatcagaagaagat ; END; BEGIN TREES; Title 'Trees from "AcutaITSACTTUBCHS.nex"'; LINK Taxa = Taxa; TRANSLATE 1 Phoma.veronicicola_CBS_145.84, 2 Phoma.acuta_phlogis_CBS_155.94, 3 Phoma.acuta_CBS_297.51, 4 Phoma.sydowii_CBS_385.80, 5 Phoma.pedicularis_CBS_390.80, 6 Leptosphaeria.doliolum_doliolum_CBS_505.75_, 7 Phoma.acuta_errabunda_CBS_541.66_, 8 _Phoma.acuta_var_errabunda_CBS_617.75, 9 _Phoma.macrocapsa_CBS_640.93, 10 Phoma.veronicicola_CBS_126583_, 11 Phoma.acuta_acuta_CBS_504.75_, 12 Phoma.acuta_errabunda_CBS_125978_, 13 Phoma.acuta_phlogis_CBS_125979_, 14 Phoma.acuta_errabunda_CBS_129999, 15 Phoma.acuta_errabunda_CBS_129997, 16 Phoma.acuta_acuta_CBS_130000, 17 Phoma.acuta_errabunda_CBS_129998, 18 Phoma.sydowii_CBS_125976_; TREE Figure_3 = (5:0.141115,(1:0.005864,10:0.005349)0.99:0.019512,(((2:0.01148,((11:0.00248,16:0.002661)0.99:0.003976,13:0.002556)0.92:0.003251)0.97:0.004627,6:0.003772,7:0.002665)0.99:0.01514,(((3:0.003451,18:0.002878)0.83:0.003273,4:0.007024)0.99:0.01854,(8:0.003321,9:0.006129,12:0.00302,14:0.00297,15:0.002985,17:0.002964)0.99:0.023789)0.98:0.010153)0.52:0.004685); END; begin MrBayes; log start filename = AcutaITSACTTUBCHS.log; outgroup CBS390.80Phoma.pedicularis; lset nst = 6 rates = gamma; mcmc temp = 0.05 ngen = 5000000 samplefreq = 10 stoprule = yes; plot; sump; sumt; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1345; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1345; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1345; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1348851647096; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 8370125302617407048; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2333112629617193800; mqVersion 274; checksumv 0 2 947968632 null getNumChars 1345 numChars 1345 getNumTaxa 18 numTaxa 18 short true bits 1152921504606846991 states 15 sumSquaresStatesOnly 506966.0 sumSquares -1.3309325849181441E22 NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 242; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1920 972; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #8370125302617407048 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #8370125302617407048; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1678 905; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; showTrees 0 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 1; getWindow; tell It; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1678 905; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TreesList.TreesListWindow.ibeam; endTell; setActive; endTell; showWindow; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #8370125302617407048 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1384.1348851633386.8897701272282424945; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1678 905; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;