#NEXUS [written Tue Aug 12 12:48:43 CEST 2014 by Mesquite version 2.74 (build 550) at DSK-CROU-012/10.136.102.32] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=182; TAXLABELS Alternaria_anagallidis_CBS_101004_ Alternaria_calendulae_CBS_101498_ Alternaria_dauci_CBS_101592_ Alternaria_cichorii_CBS_102_33_ Alternaria_crassa_CBS_103_18_ Alternaria_citrullicola_CBS_103_32 Alternaria_scorzonerae_CBS_103_46_ Alternaria_linariae_CBS_105_41 Alternaria_alternariacida_CBS_105_51 Alternaria_solani_CBS_106_21 Alternaria_macrospora_CBS_106_29_ Alternaria_dauci_CBS_106_48_ Alternaria_allii_CBS_107_28_ Alternaria_gypsophilae_CBS_107_41_ Alternaria_anagallidis_CBS_107_44_ Alternaria_zinniae_CBS_107_48_ Alternaria_linariae_CBS_107_61 Alternaria_linariae_CBS_108_53 Alternaria_zinniae_CBS_108_61_ Alternaria_allii_CBS_109_41_ Alternaria_solani_nigri_CBS_109155_ Alternaria_linariae_CBS_109156 Alternaria_solani_CBS_109157 Alternaria_grandis_CBS_109158_ Alternaria_crassa_CBS_109160_ Alternaria_linariae_CBS_109161_ Alternaria_crassa_CBS_109162_ Alternaria_nitrimali_CBS_109163_ Alternaria_linariae_CBS_109164_ Alternaria_crassa_CBS_110_38_ Alternaria_deserticola_CBS_110799_ Alternaria_dauci_CBS_111_38_ Alternaria_solani_CBS_111_41_ Alternaria_solani_CBS_111_44_ Alternaria_passiflorae_CBS_113_38 Alternaria_cirsinoxia_CBS_113261_ Alternaria_solani_nigri_CBS_113403_ Alternaria_sesami_CBS115264_ Alternaria_cucumerina_CBS_116114_ Alternaria_pipionipisi_CBS_116115_ Alternaria_tillandsiae_CBS_116116_ Alternaria_echinaceae_CBS_116117_ Alternaria_echinaceae_CBS_116118_ Alternaria_cassiae_CBS_116119_ Alternaria_novae_guineensis_CBS_116120_ Alternaria_venezuelensis_CBS_116121_ Alternaria_ranunculi_CBS_116330_ Alternaria_thunbergiae_CBS116331_ Alternaria_solani_nigri_CBS_116332 Alternaria_passiflorae_CBS_116333_ Alternaria_solani_nigri_CBS_116334 Alternaria_protenta_CBS_116437 Alternaria_linariae_CBS_116438 Alternaria_calendulae_CBS_116439_ Alternaria_carthami_CBS_116440 Alternaria_linariae_CBS_116441 Alternaria_solani_CBS_116442 Alternaria_azadirachtae_CBS_116444 Alternaria_azadirachtae_CBS_116445 Alternaria_centaureae_CBS_116446 Alternaria_solani_nigri_CBS_116447 Alternaria_crassa_CBS_116647 Alternaria_crassa_CBS_116648 Alternaria_porri_CBS_116649 Alternaria_calendulae_CBS_116650 Alternaria_protenta_CBS_116651 Alternaria_paralinicola_CBS_116652 Alternaria_grandis_CBS_116695 Alternaria_protenta_CBS_116696 Alternaria_protenta_CBS_116697 Alternaria_porri_CBS_116698 Alternaria_porri_CBS_116699 Alternaria_allii_CBS_116701 Alternaria_scorzonerae_CBS_116703 Alternaria_linariae_CBS_116704 Alternaria_zinniae_CBS_117_59 Alternaria_carthami_CBS_117091 Alternaria_carthamicola_CBS_117092 Alternaria_bataticola_CBS_117095 Alternaria_bataticola_CBS_117096 Alternaria_dauci_CBS_117097 Alternaria_dauci_CBS_117098 Alternaria_dauci_CBS_117099 Alternaria_dauci_CBS_117100 Alternaria_solani_nigri_CBS117101 Alternaria_passiflorae_CBS_117102 Alternaria_passiflorae_CBS_117103 Alternaria_dichondrae_CBS_117127 Alternaria_anagallidis_CBS_117128 Alternaria_anagallidis_CBS_117129 Alternaria_blumeae_CBS_117215 Alternaria_tropica_CBS_117216 Alternaria_tagetica_CBS_117217 Alternaria_cichorii_CBS_117218 Alternaria_cyamopsidis_CBS_117219 Alternaria_agerati_CBS_117221 Alternaria_argyroxiphii_CBS_117222 Alternaria_zinniae_CBS_117223 Alternaria_cassiae_CBS_117224 Alternaria_cucumerina_CBS_117225 Alternaria_cucumerina_CBS_117226 Alternaria_macrospora_CBS_117228 Alternaria_limicola_CBS_117360 Alternaria_ricini_CBS_117361 Alternaria_steviae_CBS_117362 Alternaria_blumeae_CBS_117364 Alternaria_pipionipisi_CBS_117365 Alternaria_rostellata_CBS_117366 Alternaria_obtecta_CBS_117367 Alternaria_cassiae_CBS_117369 Alternaria_sidae_CBS_117730 Alternaria_zinniae_CBS_118_44 Alternaria_euphorbiicola_CBS_119410 Alternaria_pseudorostrata_CBS_119411 Alternaria_thunbergiae_CBS_120986 Alternaria_protenta_CBS_121342 Alternaria_montanica_CBS_121343 Alternaria_allii_CBS_121345 Alternaria_solani_nigri_CBS_121347 Alternaria_crassa_CBS_122590 Alternaria_thunbergiae_CBS_122597 Alternaria_euphorbiicola_CBS_133874 Alternaria_silybi_CBS_134092 Alternaria_silybi_CBS_134093 Alternaria_silybi_CBS_134094 Alternaria_pipionipisi_CBS_134265 Alternaria_obtecta_CBS_134278 Alternaria_protenta_CBS_135189 Alternaria_passiflorae_CBS_166_77 Alternaria_euphorbiicola_CBS_198_86 Alternaria_dichondrae_CBS_199_74 Alternaria_dichondrae_CBS_200_74 Alternaria_ricini_CBS_215_31_ Alternaria_ipomoeae_CBS_219_79_ Alternaria_calendulae_CBS_224_76 Alternaria_allii_CBS_225_76 Alternaria_sesami_CBS_240_73 Alternaria_tagetica_CBS_297_79 Alternaria_tagetica_CBS_298_79 Alternaria_zinniae_CBS_299_79 Alternaria_zinniae_CBS_300_79 Alternaria_dauci_CBS_345_79 Alternaria_dichondrae_CBS_346_79 Alternaria_protenta_CBS_347_79 Alternaria_ricini_CBS_353_86 Alternaria_cyamopsidis_CBS_364_67 Alternaria_sennae_CBS_477_81 Alternaria_dauci_CBS_477_83 Alternaria_cassiae_CBS_478_81 Alternaria_scorzonerae_CBS_478_83 Alternaria_tagetica_CBS_479_81 Alternaria_tagetica_CBS_480_81 Alternaria_limicola_CBS_483_90 Alternaria_bataticola_CBS_531_63 Alternaria_bataticola_CBS_532_63_ Alternaria_acalyphicola_CBS_541_94 Alternaria_agripestis_CBS_577_94 Alternaria_aragakii_CBS_594_93 Alternaria_passiflorae_CBS_629_93 Alternaria_passiflorae_CBS_630_93_ _Alternaria_steviae_CBS_631_88 Alternaria_tropica_CBS_631_93 Alternaria_steviae_CBS_632_88 Alternaria_carthami_CBS_635_80 Alternaria_multirostrata_CBS_712_68 Alternaria_multirostrata_CBS_713_68 Alternaria_jesenskae_CBS_133855 Alternaria_linariae_CPC_21620 Alternaria_bataticola_PPRI_10502 Alternaria_neoipomoeae_PPRI_11845 Alternaria_neoipomoeae_PPRI_11847 Alternaria_argyroxiphii_PPRI_11848 Alternaria_bataticola_PPRI_11930 Alternaria_bataticola_PPRI_11931 Alternaria_bataticola_PPRI_11934 Alternaria_argyroxiphii_PPRI_11971 Alternaria_neoipomoeae_PPRI_13903 Alternaria_ipomoeae_PPRI_8988 Alternaria_neoipomoeae_PPRI_8990 Alternaria_catananches_CBS_137456 Alternaria_novae_guineensis_PPRI_12171 Alternaria_anodae_PPRI_12376 ; END; BEGIN TREES; Title MrBayes_RPB2; LINK Taxa = Taxa; TRANSLATE 1 Alternaria_anagallidis_CBS_101004_, 2 Alternaria_calendulae_CBS_101498_, 3 Alternaria_dauci_CBS_101592_, 4 Alternaria_cichorii_CBS_102_33_, 5 Alternaria_crassa_CBS_103_18_, 6 Alternaria_citrullicola_CBS_103_32, 7 Alternaria_scorzonerae_CBS_103_46_, 8 Alternaria_linariae_CBS_105_41, 9 Alternaria_alternariacida_CBS_105_51, 10 Alternaria_solani_CBS_106_21, 11 Alternaria_macrospora_CBS_106_29_, 12 Alternaria_dauci_CBS_106_48_, 13 Alternaria_allii_CBS_107_28_, 14 Alternaria_gypsophilae_CBS_107_41_, 15 Alternaria_anagallidis_CBS_107_44_, 16 Alternaria_zinniae_CBS_107_48_, 17 Alternaria_linariae_CBS_107_61, 18 Alternaria_linariae_CBS_108_53, 19 Alternaria_zinniae_CBS_108_61_, 20 Alternaria_allii_CBS_109_41_, 21 Alternaria_solani_nigri_CBS_109155_, 22 Alternaria_linariae_CBS_109156, 23 Alternaria_solani_CBS_109157, 24 Alternaria_grandis_CBS_109158_, 25 Alternaria_crassa_CBS_109160_, 26 Alternaria_linariae_CBS_109161_, 27 Alternaria_crassa_CBS_109162_, 28 Alternaria_nitrimali_CBS_109163_, 29 Alternaria_linariae_CBS_109164_, 30 Alternaria_crassa_CBS_110_38_, 31 Alternaria_deserticola_CBS_110799_, 32 Alternaria_dauci_CBS_111_38_, 33 Alternaria_solani_CBS_111_41_, 34 Alternaria_solani_CBS_111_44_, 35 Alternaria_passiflorae_CBS_113_38, 36 Alternaria_cirsinoxia_CBS_113261_, 37 Alternaria_solani_nigri_CBS_113403_, 38 Alternaria_sesami_CBS115264_, 39 Alternaria_cucumerina_CBS_116114_, 40 Alternaria_pipionipisi_CBS_116115_, 41 Alternaria_tillandsiae_CBS_116116_, 42 Alternaria_echinaceae_CBS_116117_, 43 Alternaria_echinaceae_CBS_116118_, 44 Alternaria_cassiae_CBS_116119_, 45 Alternaria_novae_guineensis_CBS_116120_, 46 Alternaria_venezuelensis_CBS_116121_, 47 Alternaria_ranunculi_CBS_116330_, 48 Alternaria_thunbergiae_CBS116331_, 49 Alternaria_solani_nigri_CBS_116332, 50 Alternaria_passiflorae_CBS_116333_, 51 Alternaria_solani_nigri_CBS_116334, 52 Alternaria_protenta_CBS_116437, 53 Alternaria_linariae_CBS_116438, 54 Alternaria_calendulae_CBS_116439_, 55 Alternaria_carthami_CBS_116440, 56 Alternaria_linariae_CBS_116441, 57 Alternaria_solani_CBS_116442, 58 Alternaria_azadirachtae_CBS_116444, 59 Alternaria_azadirachtae_CBS_116445, 60 Alternaria_centaureae_CBS_116446, 61 Alternaria_solani_nigri_CBS_116447, 62 Alternaria_crassa_CBS_116647, 63 Alternaria_crassa_CBS_116648, 64 Alternaria_porri_CBS_116649, 65 Alternaria_calendulae_CBS_116650, 66 Alternaria_protenta_CBS_116651, 67 Alternaria_paralinicola_CBS_116652, 68 Alternaria_grandis_CBS_116695, 69 Alternaria_protenta_CBS_116696, 70 Alternaria_protenta_CBS_116697, 71 Alternaria_porri_CBS_116698, 72 Alternaria_porri_CBS_116699, 73 Alternaria_allii_CBS_116701, 74 Alternaria_scorzonerae_CBS_116703, 75 Alternaria_linariae_CBS_116704, 76 Alternaria_zinniae_CBS_117_59, 77 Alternaria_carthami_CBS_117091, 78 Alternaria_carthamicola_CBS_117092, 79 Alternaria_bataticola_CBS_117095, 80 Alternaria_bataticola_CBS_117096, 81 Alternaria_dauci_CBS_117097, 82 Alternaria_dauci_CBS_117098, 83 Alternaria_dauci_CBS_117099, 84 Alternaria_dauci_CBS_117100, 85 Alternaria_solani_nigri_CBS117101, 86 Alternaria_passiflorae_CBS_117102, 87 Alternaria_passiflorae_CBS_117103, 88 Alternaria_dichondrae_CBS_117127, 89 Alternaria_anagallidis_CBS_117128, 90 Alternaria_anagallidis_CBS_117129, 91 Alternaria_blumeae_CBS_117215, 92 Alternaria_tropica_CBS_117216, 93 Alternaria_tagetica_CBS_117217, 94 Alternaria_cichorii_CBS_117218, 95 Alternaria_cyamopsidis_CBS_117219, 96 Alternaria_agerati_CBS_117221, 97 Alternaria_argyroxiphii_CBS_117222, 98 Alternaria_zinniae_CBS_117223, 99 Alternaria_cassiae_CBS_117224, 100 Alternaria_cucumerina_CBS_117225, 101 Alternaria_cucumerina_CBS_117226, 102 Alternaria_macrospora_CBS_117228, 103 Alternaria_limicola_CBS_117360, 104 Alternaria_ricini_CBS_117361, 105 Alternaria_steviae_CBS_117362, 106 Alternaria_blumeae_CBS_117364, 107 Alternaria_pipionipisi_CBS_117365, 108 Alternaria_rostellata_CBS_117366, 109 Alternaria_obtecta_CBS_117367, 110 Alternaria_cassiae_CBS_117369, 111 Alternaria_sidae_CBS_117730, 112 Alternaria_zinniae_CBS_118_44, 113 Alternaria_euphorbiicola_CBS_119410, 114 Alternaria_pseudorostrata_CBS_119411, 115 Alternaria_thunbergiae_CBS_120986, 116 Alternaria_protenta_CBS_121342, 117 Alternaria_montanica_CBS_121343, 118 Alternaria_allii_CBS_121345, 119 Alternaria_solani_nigri_CBS_121347, 120 Alternaria_crassa_CBS_122590, 121 Alternaria_thunbergiae_CBS_122597, 122 Alternaria_euphorbiicola_CBS_133874, 123 Alternaria_silybi_CBS_134092, 124 Alternaria_silybi_CBS_134093, 125 Alternaria_silybi_CBS_134094, 126 Alternaria_pipionipisi_CBS_134265, 127 Alternaria_obtecta_CBS_134278, 128 Alternaria_protenta_CBS_135189, 129 Alternaria_passiflorae_CBS_166_77, 130 Alternaria_euphorbiicola_CBS_198_86, 131 Alternaria_dichondrae_CBS_199_74, 132 Alternaria_dichondrae_CBS_200_74, 133 Alternaria_ricini_CBS_215_31_, 134 Alternaria_ipomoeae_CBS_219_79_, 135 Alternaria_calendulae_CBS_224_76, 136 Alternaria_allii_CBS_225_76, 137 Alternaria_sesami_CBS_240_73, 138 Alternaria_tagetica_CBS_297_79, 139 Alternaria_tagetica_CBS_298_79, 140 Alternaria_zinniae_CBS_299_79, 141 Alternaria_zinniae_CBS_300_79, 142 Alternaria_dauci_CBS_345_79, 143 Alternaria_dichondrae_CBS_346_79, 144 Alternaria_protenta_CBS_347_79, 145 Alternaria_ricini_CBS_353_86, 146 Alternaria_cyamopsidis_CBS_364_67, 147 Alternaria_sennae_CBS_477_81, 148 Alternaria_dauci_CBS_477_83, 149 Alternaria_cassiae_CBS_478_81, 150 Alternaria_scorzonerae_CBS_478_83, 151 Alternaria_tagetica_CBS_479_81, 152 Alternaria_tagetica_CBS_480_81, 153 Alternaria_limicola_CBS_483_90, 154 Alternaria_bataticola_CBS_531_63, 155 Alternaria_bataticola_CBS_532_63_, 156 Alternaria_acalyphicola_CBS_541_94, 157 Alternaria_agripestis_CBS_577_94, 158 Alternaria_aragakii_CBS_594_93, 159 Alternaria_passiflorae_CBS_629_93, 160 Alternaria_passiflorae_CBS_630_93_, 161 _Alternaria_steviae_CBS_631_88, 162 Alternaria_tropica_CBS_631_93, 163 Alternaria_steviae_CBS_632_88, 164 Alternaria_carthami_CBS_635_80, 165 Alternaria_multirostrata_CBS_712_68, 166 Alternaria_multirostrata_CBS_713_68, 167 Alternaria_jesenskae_CBS_133855, 168 Alternaria_linariae_CPC_21620, 169 Alternaria_bataticola_PPRI_10502, 170 Alternaria_neoipomoeae_PPRI_11845, 171 Alternaria_neoipomoeae_PPRI_11847, 172 Alternaria_argyroxiphii_PPRI_11848, 173 Alternaria_bataticola_PPRI_11930, 174 Alternaria_bataticola_PPRI_11931, 175 Alternaria_bataticola_PPRI_11934, 176 Alternaria_argyroxiphii_PPRI_11971, 177 Alternaria_neoipomoeae_PPRI_13903, 178 Alternaria_ipomoeae_PPRI_8988, 179 Alternaria_neoipomoeae_PPRI_8990, 180 Alternaria_catananches_CBS_137456, 181 Alternaria_novae_guineensis_PPRI_12171, 182 Alternaria_anodae_PPRI_12376; TREE MrBayes_RPB2 = (14:2.467400624561821,6:0.3899236741493407,114:0.532345178011116,(105:0.0366758021788702,161:0.03426629820127137,163:0.03597909724196678)1.000:0.5131716826628525,(4:0.03697783450001493,(36:0.03572554851399917,180:0.03543152353340836)0.971:0.08556004821312296,60:0.03387734657873475,94:0.03342154823502529)1.000:0.4967173811869526,(92:0.03430895420652616,97:0.03578130991435906,162:0.03462213642857285,172:0.03545279374729094,176:0.03476494070902395)1.000:0.2577207573600557,(109:0.03664215970009221,127:0.03374147704942134)1.000:0.601729926637554,(2:0.03462395354176638,54:0.03373833012388573,65:0.03470540115787014,135:0.03496952708730194)1.000:0.2696024753459404,(8:0.03255330278843942,17:0.0346500164787247,18:0.03677287605370234,22:0.0338369931283834,26:0.03627895504142141,29:0.03557219967662881,53:0.03586860557398119,56:0.0344565208182154,75:0.03614332941439987,168:0.03495314364224614)1.000:0.4230048883913796,((103:0.0353277278193657,153:0.03337886311941618)0.990:0.0856168356675713,(113:0.03643207985118702,122:0.03566886771879137,130:0.03474515044618251)1.000:0.1317313370759447)1.000:0.6024944311461573,((7:0.03489061223824048,74:0.03520494952249742,78:0.03553460035761464,150:0.03410818910263952)0.969:0.1349441793559508,117:0.2921886276687412)0.999:0.2233021635660312,((79:0.03493820723163668,80:0.03414767723243243,154:0.03523227417480733,155:0.0355684873373062,169:0.03398728404819996,173:0.03513517864887115,174:0.03441246142890578,175:0.03409436876884422)0.992:0.2077305235434535,(93:0.03482734265493433,138:0.03430216987745544,139:0.03648489743229956,151:0.03530873733062815,152:0.03397787354988657)0.968:0.1654828230143766)0.957:0.2014731268392898,(((((9:0.03632639185814494,123:0.03535586597459893,124:0.03502112347768464,125:0.03589045308434041)0.997:0.1440599581160127,47:0.07926835883675677)1.000:0.3476235267239259,(((((10:0.03531930689573948,23:0.03467711065879636,24:0.03512095864255044,33:0.03303781629015699,34:0.03402664075731338,57:0.03424587943650344,68:0.03522033559876363)0.999:0.1364261429774914,(35:0.03504184758309795,50:0.03592140878061771,86:0.03262179988992892,87:0.1322461446256608,129:0.03689121971483779,159:0.03438170058722467,160:0.03593851001888322)0.899:0.08515652522160867,67:0.03623515279157286,(88:0.03541366389192121,131:0.03302491934486824,132:0.03496735203502963,143:0.03290880943879541)0.942:0.08158192809290242,157:0.1353286667348395)0.838:0.08450543746169552,(165:0.03346740222808966,166:0.03692098461601346)0.985:0.09469592993725383)0.993:0.1545553502082574,167:0.4481083971631428)0.618:0.10109003312654,(55:0.03551327024783139,77:0.03446946568385433,164:0.03417627185675911)0.999:0.2091608017223473)0.649:0.1689955087037167)0.595:0.09525458710022336,(21:0.03476071692071856,37:0.03581473963716825,49:0.0349368473569771,51:0.03432495448471647,52:0.03313944757231042,61:0.03319749808911863,66:0.03512539467855431,69:0.035266016048911,70:0.03706443957033245,85:0.03512167130512165,116:0.03583755210933107,119:0.03391183544663036,128:0.0348762765669622,144:0.03443796410188729)0.691:0.08540013525944476,(64:0.03565484525778953,71:0.03618123324531172,72:0.03636328816881514)0.999:0.1420788306099702)0.743:0.2481477843190426,(13:0.03518484851963918,20:0.03419889361900232,73:0.03628075957765737,118:0.03417326266688081,136:0.03439208974793803)0.987:0.1440132788541229)0.710:0.1383632552270178,(((((((5:0.03525602773504629,25:0.03600519682189768,27:0.03430932562449603,30:0.03333080226532939,62:0.03498578685385818,63:0.03454014121782055,120:0.03421566486450079)1.000:0.185358652758331,31:0.3346066756461142,(40:0.03295846662589675,107:0.03427183591668429,126:0.03573949522144599)1.000:0.3202489235368671)0.871:0.1630806311965609,28:0.08339069311639753,(48:0.03525864756406589,115:0.03448850427066093,121:0.08174185551461448)0.972:0.2314458923471261,(95:0.03516300965022319,146:0.03422133693401692)1.000:0.4745979850419942)0.937:0.2329842704859264,108:0.3632461200688504)0.858:0.2197096757846268,182:0.3692429887483028)0.515:0.1200335160143248,(((11:0.03565946575850709,(39:0.03623906222978059,100:0.08581653268111473)0.971:0.08251838553380637,46:0.03494951057560015,101:0.03540697523448001,102:0.03563087536217171,158:0.0341257192187796)0.871:0.08809944792480984,((16:0.03382608397384389,76:0.0363077247872106,98:0.03570636587521067,112:0.03714204489437818)0.951:0.08446398184658657,19:0.03444065111273216,140:0.03478095402198671,141:0.03574028814205236)1.000:0.1931829371236305)0.994:0.1495503654276852,(((38:0.03439465799345087,(58:0.03260818797811035,59:0.03649139646757044)0.999:0.1686866029920575,104:0.03580676940543056,133:0.03507857843223065,137:0.03470022334598358,145:0.03525009395658438,156:0.08422659657310438)1.000:0.2396943458293608,(111:0.08313812879543764,147:0.08549114293258939)1.000:0.4110064981755486)0.856:0.119810031062851,(44:0.03520040527911662,99:0.03508032913304472,110:0.03447531052409308,149:0.03382112903327427)0.924:0.09011624783938751)0.966:0.1776935179314038)0.552:0.08310068956919671,(41:0.1085711379397157,(45:0.08070684116428749,181:0.03470598078973761)1.000:0.3181576011258456)0.843:0.1763944627245086)0.511:0.1804100459647011,(91:0.03453168347020528,96:0.08297103532484977,106:0.03457434118710968)0.949:0.3588479144676255)0.538:0.2046546956896311,((((1:0.03327644623672151,89:0.03376845484938004,90:0.03464369877780384)0.995:0.1446717160376713,(134:0.0336790595199822,(170:0.03454650631416805,171:0.03541270283662795,177:0.03442429531976519,179:0.03470595839465402)1.000:0.236646808494919,178:0.03434567697579449)1.000:0.2306919683221713)0.905:0.1338597118419127,15:0.1543880454367974)0.555:0.08635743065565214,(3:0.03534678157289655,12:0.03411269421636889,32:0.03621394091558277,81:0.03440005908843719,83:0.03457076263632526)0.928:0.08313713427778419,(42:0.03541338687069814,43:0.03413363763307176)1.000:0.2255039152536824,(82:0.03280760873047568,148:0.03461176940671588)0.965:0.08208718365528389,84:0.1336547265718193,142:0.04376020101240213)0.523:0.1323966791679322); END; BEGIN TREES; Title RAxML_RPB2; LINK Taxa = Taxa; TRANSLATE 1 Alternaria_anagallidis_CBS_101004_, 2 Alternaria_calendulae_CBS_101498_, 3 Alternaria_dauci_CBS_101592_, 4 Alternaria_cichorii_CBS_102_33_, 5 Alternaria_crassa_CBS_103_18_, 6 Alternaria_citrullicola_CBS_103_32, 7 Alternaria_scorzonerae_CBS_103_46_, 8 Alternaria_linariae_CBS_105_41, 9 Alternaria_alternariacida_CBS_105_51, 10 Alternaria_solani_CBS_106_21, 11 Alternaria_macrospora_CBS_106_29_, 12 Alternaria_dauci_CBS_106_48_, 13 Alternaria_allii_CBS_107_28_, 14 Alternaria_gypsophilae_CBS_107_41_, 15 Alternaria_anagallidis_CBS_107_44_, 16 Alternaria_zinniae_CBS_107_48_, 17 Alternaria_linariae_CBS_107_61, 18 Alternaria_linariae_CBS_108_53, 19 Alternaria_zinniae_CBS_108_61_, 20 Alternaria_allii_CBS_109_41_, 21 Alternaria_solani_nigri_CBS_109155_, 22 Alternaria_linariae_CBS_109156, 23 Alternaria_solani_CBS_109157, 24 Alternaria_grandis_CBS_109158_, 25 Alternaria_crassa_CBS_109160_, 26 Alternaria_linariae_CBS_109161_, 27 Alternaria_crassa_CBS_109162_, 28 Alternaria_nitrimali_CBS_109163_, 29 Alternaria_linariae_CBS_109164_, 30 Alternaria_crassa_CBS_110_38_, 31 Alternaria_deserticola_CBS_110799_, 32 Alternaria_dauci_CBS_111_38_, 33 Alternaria_solani_CBS_111_41_, 34 Alternaria_solani_CBS_111_44_, 35 Alternaria_passiflorae_CBS_113_38, 36 Alternaria_cirsinoxia_CBS_113261_, 37 Alternaria_solani_nigri_CBS_113403_, 38 Alternaria_sesami_CBS115264_, 39 Alternaria_cucumerina_CBS_116114_, 40 Alternaria_pipionipisi_CBS_116115_, 41 Alternaria_tillandsiae_CBS_116116_, 42 Alternaria_echinaceae_CBS_116117_, 43 Alternaria_echinaceae_CBS_116118_, 44 Alternaria_cassiae_CBS_116119_, 45 Alternaria_novae_guineensis_CBS_116120_, 46 Alternaria_venezuelensis_CBS_116121_, 47 Alternaria_ranunculi_CBS_116330_, 48 Alternaria_thunbergiae_CBS116331_, 49 Alternaria_solani_nigri_CBS_116332, 50 Alternaria_passiflorae_CBS_116333_, 51 Alternaria_solani_nigri_CBS_116334, 52 Alternaria_protenta_CBS_116437, 53 Alternaria_linariae_CBS_116438, 54 Alternaria_calendulae_CBS_116439_, 55 Alternaria_carthami_CBS_116440, 56 Alternaria_linariae_CBS_116441, 57 Alternaria_solani_CBS_116442, 58 Alternaria_azadirachtae_CBS_116444, 59 Alternaria_azadirachtae_CBS_116445, 60 Alternaria_centaureae_CBS_116446, 61 Alternaria_solani_nigri_CBS_116447, 62 Alternaria_crassa_CBS_116647, 63 Alternaria_crassa_CBS_116648, 64 Alternaria_porri_CBS_116649, 65 Alternaria_calendulae_CBS_116650, 66 Alternaria_protenta_CBS_116651, 67 Alternaria_paralinicola_CBS_116652, 68 Alternaria_grandis_CBS_116695, 69 Alternaria_protenta_CBS_116696, 70 Alternaria_protenta_CBS_116697, 71 Alternaria_porri_CBS_116698, 72 Alternaria_porri_CBS_116699, 73 Alternaria_allii_CBS_116701, 74 Alternaria_scorzonerae_CBS_116703, 75 Alternaria_linariae_CBS_116704, 76 Alternaria_zinniae_CBS_117_59, 77 Alternaria_carthami_CBS_117091, 78 Alternaria_carthamicola_CBS_117092, 79 Alternaria_bataticola_CBS_117095, 80 Alternaria_bataticola_CBS_117096, 81 Alternaria_dauci_CBS_117097, 82 Alternaria_dauci_CBS_117098, 83 Alternaria_dauci_CBS_117099, 84 Alternaria_dauci_CBS_117100, 85 Alternaria_solani_nigri_CBS117101, 86 Alternaria_passiflorae_CBS_117102, 87 Alternaria_passiflorae_CBS_117103, 88 Alternaria_dichondrae_CBS_117127, 89 Alternaria_anagallidis_CBS_117128, 90 Alternaria_anagallidis_CBS_117129, 91 Alternaria_blumeae_CBS_117215, 92 Alternaria_tropica_CBS_117216, 93 Alternaria_tagetica_CBS_117217, 94 Alternaria_cichorii_CBS_117218, 95 Alternaria_cyamopsidis_CBS_117219, 96 Alternaria_agerati_CBS_117221, 97 Alternaria_argyroxiphii_CBS_117222, 98 Alternaria_zinniae_CBS_117223, 99 Alternaria_cassiae_CBS_117224, 100 Alternaria_cucumerina_CBS_117225, 101 Alternaria_cucumerina_CBS_117226, 102 Alternaria_macrospora_CBS_117228, 103 Alternaria_limicola_CBS_117360, 104 Alternaria_ricini_CBS_117361, 105 Alternaria_steviae_CBS_117362, 106 Alternaria_blumeae_CBS_117364, 107 Alternaria_pipionipisi_CBS_117365, 108 Alternaria_rostellata_CBS_117366, 109 Alternaria_obtecta_CBS_117367, 110 Alternaria_cassiae_CBS_117369, 111 Alternaria_sidae_CBS_117730, 112 Alternaria_zinniae_CBS_118_44, 113 Alternaria_euphorbiicola_CBS_119410, 114 Alternaria_pseudorostrata_CBS_119411, 115 Alternaria_thunbergiae_CBS_120986, 116 Alternaria_protenta_CBS_121342, 117 Alternaria_montanica_CBS_121343, 118 Alternaria_allii_CBS_121345, 119 Alternaria_solani_nigri_CBS_121347, 120 Alternaria_crassa_CBS_122590, 121 Alternaria_thunbergiae_CBS_122597, 122 Alternaria_euphorbiicola_CBS_133874, 123 Alternaria_silybi_CBS_134092, 124 Alternaria_silybi_CBS_134093, 125 Alternaria_silybi_CBS_134094, 126 Alternaria_pipionipisi_CBS_134265, 127 Alternaria_obtecta_CBS_134278, 128 Alternaria_protenta_CBS_135189, 129 Alternaria_passiflorae_CBS_166_77, 130 Alternaria_euphorbiicola_CBS_198_86, 131 Alternaria_dichondrae_CBS_199_74, 132 Alternaria_dichondrae_CBS_200_74, 133 Alternaria_ricini_CBS_215_31_, 134 Alternaria_ipomoeae_CBS_219_79_, 135 Alternaria_calendulae_CBS_224_76, 136 Alternaria_allii_CBS_225_76, 137 Alternaria_sesami_CBS_240_73, 138 Alternaria_tagetica_CBS_297_79, 139 Alternaria_tagetica_CBS_298_79, 140 Alternaria_zinniae_CBS_299_79, 141 Alternaria_zinniae_CBS_300_79, 142 Alternaria_dauci_CBS_345_79, 143 Alternaria_dichondrae_CBS_346_79, 144 Alternaria_protenta_CBS_347_79, 145 Alternaria_ricini_CBS_353_86, 146 Alternaria_cyamopsidis_CBS_364_67, 147 Alternaria_sennae_CBS_477_81, 148 Alternaria_dauci_CBS_477_83, 149 Alternaria_cassiae_CBS_478_81, 150 Alternaria_scorzonerae_CBS_478_83, 151 Alternaria_tagetica_CBS_479_81, 152 Alternaria_tagetica_CBS_480_81, 153 Alternaria_limicola_CBS_483_90, 154 Alternaria_bataticola_CBS_531_63, 155 Alternaria_bataticola_CBS_532_63_, 156 Alternaria_acalyphicola_CBS_541_94, 157 Alternaria_agripestis_CBS_577_94, 158 Alternaria_aragakii_CBS_594_93, 159 Alternaria_passiflorae_CBS_629_93, 160 Alternaria_passiflorae_CBS_630_93_, 161 _Alternaria_steviae_CBS_631_88, 162 Alternaria_tropica_CBS_631_93, 163 Alternaria_steviae_CBS_632_88, 164 Alternaria_carthami_CBS_635_80, 165 Alternaria_multirostrata_CBS_712_68, 166 Alternaria_multirostrata_CBS_713_68, 167 Alternaria_jesenskae_CBS_133855, 168 Alternaria_linariae_CPC_21620, 169 Alternaria_bataticola_PPRI_10502, 170 Alternaria_neoipomoeae_PPRI_11845, 171 Alternaria_neoipomoeae_PPRI_11847, 172 Alternaria_argyroxiphii_PPRI_11848, 173 Alternaria_bataticola_PPRI_11930, 174 Alternaria_bataticola_PPRI_11931, 175 Alternaria_bataticola_PPRI_11934, 176 Alternaria_argyroxiphii_PPRI_11971, 177 Alternaria_neoipomoeae_PPRI_13903, 178 Alternaria_ipomoeae_PPRI_8988, 179 Alternaria_neoipomoeae_PPRI_8990, 180 Alternaria_catananches_CBS_137456, 181 Alternaria_novae_guineensis_PPRI_12171, 182 Alternaria_anodae_PPRI_12376; TREE RAxML_RPB2 = ((96:2.73445828304707E-6,((91:2.73445828304707E-6,106:2.73445828304707E-6)74:2.73445828304707E-6,((41:0.0015905346942846276,(181:2.73445828304707E-6,45:0.0015767975082795996)100:0.00983842390888998)52:0.004894533606798371,(((((39:2.73445828304707E-6,100:0.0015939652059943062)63:0.0015957573975288498,(11:2.73445828304707E-6,((101:2.73445828304707E-6,(158:2.73445828304707E-6,102:2.73445828304707E-6)11:2.73445828304707E-6)8:2.73445828304707E-6,46:2.73445828304707E-6)5:2.73445828304707E-6)37:2.73445828304707E-6)78:0.0016120136447983309,(((141:2.73445828304707E-6,19:2.73445828304707E-6)35:2.73445828304707E-6,140:2.73445828304707E-6)53:2.73445828304707E-6,((98:2.73445828304707E-6,76:2.73445828304707E-6)20:2.73445828304707E-6,(112:2.73445828304707E-6,16:2.73445828304707E-6)10:2.73445828304707E-6)66:0.0015919786071868186)94:0.004877896112314672)74:0.003210249100088396,((182:0.012768276905540898,(108:0.010955662670859618,(((((115:2.73445828304707E-6,48:2.73445828304707E-6)74:2.73445828304707E-6,121:0.0015700177591907337)96:0.0063662935356776215,28:0.0015681591161982179)39:2.73445828304707E-6,(95:2.73445828304707E-6,146:2.73445828304707E-6)100:0.014932426674631539)31:0.0015378769139515731,(((126:2.73445828304707E-6,40:2.73445828304707E-6)33:2.73445828304707E-6,107:2.73445828304707E-6)99:0.00964976554670728,(31:0.009639588575823251,((120:2.73445828304707E-6,((5:2.73445828304707E-6,27:2.73445828304707E-6)7:2.73445828304707E-6,(63:2.73445828304707E-6,30:2.73445828304707E-6)38:2.73445828304707E-6)8:2.73445828304707E-6)2:2.73445828304707E-6,(25:2.73445828304707E-6,62:2.73445828304707E-6)9:2.73445828304707E-6)98:0.004774911551069629)28:2.73445828304707E-6)52:0.0032220266007104174)62:0.006124082378305587)30:0.004695682849757473)20:0.0022421143734282748,((((110:2.73445828304707E-6,44:2.73445828304707E-6)22:2.73445828304707E-6,99:2.73445828304707E-6)17:2.73445828304707E-6,149:2.73445828304707E-6)86:0.001614762907041565,((111:0.001547548741130564,147:0.0016579396131325978)100:0.01367437641585065,((156:0.0015901518410636518,((145:2.73445828304707E-6,((104:2.73445828304707E-6,38:2.73445828304707E-6)26:2.73445828304707E-6,137:2.73445828304707E-6)11:2.73445828304707E-6)4:2.73445828304707E-6,133:2.73445828304707E-6)33:2.73445828304707E-6)77:0.0012356449490139477,(58:2.73445828304707E-6,59:2.73445828304707E-6)95:0.0035750555439877083)90:0.006914829787753972)39:0.0017151348526661453)47:0.00489017829928339)7:2.73445828304707E-6)22:0.0016281858218533682,((127:2.73445828304707E-6,109:2.73445828304707E-6)100:0.018887142930304218,((((114:0.01639624328091977,((((((((83:2.73445828304707E-6,(3:2.73445828304707E-6,12:2.73445828304707E-6)31:2.73445828304707E-6)14:2.73445828304707E-6,81:2.73445828304707E-6)8:2.73445828304707E-6,32:2.73445828304707E-6)69:0.0015622525706951583,(142:2.73445828304707E-6,(42:2.73445828304707E-6,43:2.73445828304707E-6)99:0.006372973278188948)21:0.001565802700357226)2:2.73445828304707E-6,((82:2.73445828304707E-6,148:2.73445828304707E-6)77:0.0015629314134575313,84:0.003160393863739976)15:2.73445828304707E-6)5:2.73445828304707E-6,(15:0.0031847164210302616,((((179:2.73445828304707E-6,(170:2.73445828304707E-6,171:2.73445828304707E-6)8:2.73445828304707E-6)19:2.73445828304707E-6,177:2.73445828304707E-6)98:0.006415901942915751,(134:2.73445828304707E-6,178:2.73445828304707E-6)97:2.73445828304707E-6)90:0.006527579497520418,((90:2.73445828304707E-6,89:2.73445828304707E-6)70:2.73445828304707E-6,1:2.73445828304707E-6)98:0.003191667408388112)39:0.003182120114250102)24:0.0015771060239274644)14:0.004775411653253449,(((172:2.73445828304707E-6,97:2.73445828304707E-6)8:2.73445828304707E-6,92:2.73445828304707E-6)5:2.73445828304707E-6,(162:2.73445828304707E-6,176:2.73445828304707E-6)11:2.73445828304707E-6)99:0.006626835102351741)13:0.004783428320932076,((2:2.73445828304707E-6,54:2.73445828304707E-6)32:2.73445828304707E-6,(135:2.73445828304707E-6,65:2.73445828304707E-6)25:2.73445828304707E-6)99:0.007988268586233372)1:2.73445828304707E-6)1:0.0016112398972644864,(((105:2.73445828304707E-6,163:2.73445828304707E-6)29:2.73445828304707E-6,161:2.73445828304707E-6)100:0.015813807768682003,(((75:2.73445828304707E-6,(((8:2.73445828304707E-6,(29:2.73445828304707E-6,(17:2.73445828304707E-6,26:2.73445828304707E-6)4:2.73445828304707E-6)0:2.73445828304707E-6)1:2.73445828304707E-6,168:2.73445828304707E-6)0:2.73445828304707E-6,18:2.73445828304707E-6)0:2.73445828304707E-6)0:2.73445828304707E-6,(53:2.73445828304707E-6,56:2.73445828304707E-6)17:2.73445828304707E-6)1:2.73445828304707E-6,22:2.73445828304707E-6)100:0.015472008585295901)28:0.001048301806638901)1:0.001641705265729221,((((130:2.73445828304707E-6,113:2.73445828304707E-6)32:2.73445828304707E-6,122:2.73445828304707E-6)95:0.0032046555166590435,(153:2.73445828304707E-6,103:2.73445828304707E-6)96:0.0016383768921696116)100:0.02046477456396801,(((36:2.73445828304707E-6,180:2.73445828304707E-6)64:0.0015968839102927636,((60:2.73445828304707E-6,4:2.73445828304707E-6)30:2.73445828304707E-6,94:2.73445828304707E-6)49:2.73445828304707E-6)100:0.01499810097722336,((((64:2.73445828304707E-6,71:2.73445828304707E-6)31:2.73445828304707E-6,72:2.73445828304707E-6)88:0.0031992814025007497,(((47:0.0014498179233376721,(((9:2.73445828304707E-6,124:2.73445828304707E-6)26:2.73445828304707E-6,125:2.73445828304707E-6)18:2.73445828304707E-6,123:2.73445828304707E-6)92:0.00341986823753355)94:0.00996813330648806,(((55:2.73445828304707E-6,164:2.73445828304707E-6)35:2.73445828304707E-6,77:2.73445828304707E-6)97:0.005171840689177876,(((165:2.73445828304707E-6,166:2.73445828304707E-6)85:0.0016212207869033338,(((132:2.73445828304707E-6,88:2.73445828304707E-6)28:2.73445828304707E-6,(143:2.73445828304707E-6,131:2.73445828304707E-6)20:2.73445828304707E-6)64:0.0015905681469908911,(((87:0.00320999715636658,(((((159:2.73445828304707E-6,50:2.73445828304707E-6)5:2.73445828304707E-6,160:2.73445828304707E-6)1:2.73445828304707E-6,86:2.73445828304707E-6)1:2.73445828304707E-6,129:2.73445828304707E-6)2:2.73445828304707E-6,35:2.73445828304707E-6)30:2.73445828304707E-6)61:0.0015875407829874628,((((57:2.73445828304707E-6,23:2.73445828304707E-6)4:2.73445828304707E-6,(34:2.73445828304707E-6,(33:2.73445828304707E-6,68:2.73445828304707E-6)6:2.73445828304707E-6)0:2.73445828304707E-6)2:2.73445828304707E-6,(10:2.73445828304707E-6,24:2.73445828304707E-6)11:2.73445828304707E-6)87:0.0031903065448435305,157:0.0031864770572706293)17:2.73445828304707E-6)3:2.73445828304707E-6,67:2.73445828304707E-6)9:2.73445828304707E-6)63:0.0015758656144705958)82:0.0036240719534790357,167:0.01276784908363126)36:0.0018053437779919446)38:0.004389632533800534)35:0.0017164255079209305,((52:2.73445828304707E-6,(51:2.73445828304707E-6,(((((49:2.73445828304707E-6,37:2.73445828304707E-6)9:2.73445828304707E-6,85:2.73445828304707E-6)0:2.73445828304707E-6,(144:2.73445828304707E-6,119:2.73445828304707E-6)7:2.73445828304707E-6)0:2.73445828304707E-6,70:2.73445828304707E-6)0:2.73445828304707E-6,(66:2.73445828304707E-6,(21:2.73445828304707E-6,69:2.73445828304707E-6)2:2.73445828304707E-6)0:2.73445828304707E-6)0:2.73445828304707E-6)0:2.73445828304707E-6)0:2.73445828304707E-6,((128:2.73445828304707E-6,116:2.73445828304707E-6)8:2.73445828304707E-6,61:2.73445828304707E-6)0:2.73445828304707E-6)77:0.0015884705747765283)14:2.73445828304707E-6)64:0.006624516565791588,(((136:2.73445828304707E-6,118:2.73445828304707E-6)42:2.73445828304707E-6,(13:2.73445828304707E-6,20:2.73445828304707E-6)42:2.73445828304707E-6)8:2.73445828304707E-6,73:2.73445828304707E-6)93:0.0031971576683727746)47:0.0032835297438200206)13:2.73445828304707E-6)4:0.001556157768757349)0:0.00311423757322344,(((117:0.008643364180793272,((7:2.73445828304707E-6,74:2.73445828304707E-6)32:2.73445828304707E-6,(150:2.73445828304707E-6,78:2.73445828304707E-6)28:2.73445828304707E-6)91:0.00309191165296655)70:0.006711100028125643,6:0.011530539660743718)10:2.73445828304707E-6,((((151:2.73445828304707E-6,(93:2.73445828304707E-6,138:2.73445828304707E-6)22:2.73445828304707E-6)17:2.73445828304707E-6,152:2.73445828304707E-6)9:2.73445828304707E-6,139:2.73445828304707E-6)96:0.0031411757749311505,((((154:2.73445828304707E-6,(79:2.73445828304707E-6,173:2.73445828304707E-6)3:2.73445828304707E-6)1:2.73445828304707E-6,((175:2.73445828304707E-6,155:2.73445828304707E-6)23:2.73445828304707E-6,169:2.73445828304707E-6)0:2.73445828304707E-6)1:2.73445828304707E-6,174:2.73445828304707E-6)2:2.73445828304707E-6,80:2.73445828304707E-6)96:0.006604009713088286)62:0.006432423828538067)1:0.0016577707952795215)2:0.0016303079436451747)3:0.004935239890915763)2:0.0016834894738374931)46:0.013183940630171836)24:0.0015803954707759621):0.05499390135190991,14:0.05499390135190991); END; begin mrbayes; log start filename = RPB2.log; outgroup CBS107_41_Alternaria_gypsophilae_Gypsophila_elegans; lset nst = 6 rates = gamma; mcmc temp = 0.1 ngen = 5000000 samplefreq = 1000 stoprule = yes stopval = 0.01; plot; sump; sumt conformat = simple; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1407840524001; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4451166119362065710; endTell; getWindow; tell It; suppress; setResourcesState false false 242; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1920 972; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #4451166119362065710 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #4451166119362065710; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1678 905; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; showTrees 0 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 1; getWindow; tell It; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1678 905; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TreesList.TreesListWindow.ibeam; endTell; endTell; showWindow; endTell; showTrees 1 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 2; getWindow; tell It; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1678 905; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TreesList.TreesListWindow.ibeam; endTell; endTell; showWindow; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #4451166119362065710 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 2; toggleUseWeights off; endTell; setAssignedID 1407.1407835820569.1176048421774323847; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1678 905; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;