NEXUS
[File created by TreeBASE:  1/16/09  15:33:33]
[Matrix accession#: M3690]

BEGIN TAXA;
	TITLE M3690;
	DIMENSIONS  NTAX=18;
	TAXLABELS
		Cuscuta_warneri	Cuscuta_mcvaughii	Cuscuta_vandevenderi_1092	Cuscuta_vandevenderi_1079	Cuscuta_vandevenderi_1078	Cuscuta_vandevenderi_1058	Cuscuta_deltoidea	Cuscuta_colombiana	Cuscuta_ariesteguietae	Cuscuta_sidarum_751	Cuscuta_sidarum_519	Cuscuta_sidarum_1005	Cuscuta_punana	Cuscuta_gracillima_621	Cuscuta_gracillima_600	Cuscuta_gracillima_599	Cuscuta_gracillima_620	Cuscuta_gracillima_463
	;
END;

BEGIN CHARACTERS;
	TITLE M3690;
	DIMENSIONS NCHAR=1252;
	FORMAT SYMBOLS = " A C G T 0 1 2 3 4 5 " MISSING = ? GAP = -  ;
	MATRIX
		Cuscuta_warneri                 ---------GACTTAATTGGATTGAGCCTTAGTATGGAAACTTACTAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAATTAAAGAAAAGGGGCAATCCTGAGCCAAATCCTTTTTCTATTTT-------TATCACAAACTAAGGATAGGTGCAGAGACTCAAAGGAAGCTTTTCTAACAAATGC-------AAGT------------------CACTAATTTGAGAATAAAGAGAGAGTCCTTTTCTACGTATCAAT---ACAGATAGTAATGAAATTTTCAGTAAGAAGAAAATCCGTGGATTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCA---------CAAAATACTATTCCGCTCACCACCTTTATTTTTCAGTTGG----------TTCAAATAAAAAAAAGCCCTTCT-------------------CAGTTTTAC-TCTCCTATTAGTTACCTAAAGGAAATGAAGTCGGGATAGCTCAGCCGGTACAGCAGAGGACTGAAAATCCTCG--------------------------------------------GGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAACCTTTTCGG--TAGGCTGACTTG--AACTCGTAGATAAACAAAACA-ATAGTGTTGGATCTTGTCGCGAAGATTCAGCCTCAACG---AAAAATACCGGCACTATTAGCGCCAAGGA-TAT--GGAAATGAGCATGTCAGCTTGCAATGTTTTTTTGGAGCACGTGCA-GGA---TG-TGTATTT---AATAGAAATGACTCTTGGCAATGGATATCTTGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAATCTTTGAACGCAAGTTGCGCCGGATGCCAATTTGGTCGACGGCTCGTTTGCTTGGGAGTCAAATGGTGTGTTGTTCCT-CC----TTTTGGCGAGGGACTGGATCATGGCCTCCCAGGCTAAGGTTTTGGCGTGGTTGGCTGAAATTCTTGTCCTTGGAGATCAATGATTTCTTTGTATGTGGTGGTTTGTGCCTAGTGTGCA-AAAGACATGCGCTGAAAGCGTTGATTGTGGAAGTT-AGACCCTCTGGGGATGGCATAGTTTCCTCTTTGATTGGGACCCCAAGTCAAGCGGGACTACCCGCTGAGTT--------------------------------------
		Cuscuta_mcvaughii               -------------------GATTGAGCCTTGGTATGGAAACTTACTAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAAT-AAATAAAAGGGGCAATCCTGAGCCAACTCC-TTGATTAT-----------------------GGATAGGTGCAGAGACTCAATGGAAGCTTTTCTAACAAATGCACAAAAATAGTTTGATAAATATTTTTACAAACTTAATTGAGAATAAAGAGAGAGTCCTTTTCTACATGTCAATACAACATATCTAAATGAAATTGTCAGTAAGAAGAAAATCCGTGGATTGGAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAGATAGAAAAAACTGCTATTAAGCTCACCGCCTTTATTT-GCATTTGCTTAG-------------------AAGGACTTTT-------------------AGGTTTTTCATTTCCTAAAATTTTCATTA-GGAAATGAAGTTGGGATAGCTCAGCCGGTAGAGCAGAGGACTGAAAATCCTCGTGTCAC-----------------------------------------------------------GGAAGGATCATTGTCGAAACCT-GCAGAGCAGAATGACTTGAGGACTTGTGAAAATGCGTAAGT-GCGGGGTTGGAT-TTATATCTTGGGTCCAACCTCGACGAACAAAAACACCGGC-GCAGCAGCGCCAAGGAATTC--CGGAAAGAGAATGCCAGCTTGCAA-G-TGTCTTTG-GTGCTTGTGGGGGCGGCATCATCTGAAGCAAAAATAATGACTCTCGGCAATGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAATCTTTGAACGCAAGTTGCGCCCGAAGCCAATTAGGTTGAGGGCACGTTTGTTTGGGCGTCACGCGTCGTGTCGCTCCT-CCTGTGTTTTGGGAAGGGAGCGGATCGTGGCCTCCCGGGCCTTTCCTCGGGCGTGGTTGGCCGGAACTCTTGCCCC-GACGATGTTCAATGTCTTGGCGTGTGGTGGG-TGTACCAAGTGTGCATGAAAGCACGCCTAGTGCGG-TCGAATGTGGCGTTAGGACCCCTTTGGAGCCGGCGGAGTCGGCTCTCTGATTGCGACCCCAAGTCAGGCGGGACTACCCGCTGA-----------------------------------------
		Cuscuta_vandevenderi_1092       -----TACGGACTTAATTGGATTGAGCCTTGGTATGGAAACTTATTAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAAT-AAAGAAAAGGGGCAATCCTGAGCCAAATCCTTTTTATATTTTATTATTTTATAAAAAACTAAGGATAGGTGCAGAGACTCAACGGAAGCTTTTCTAACAAAT---AAAAAAAAGGTTGATAAATATTTTTACAAAGTTATTTGAGAATAAAGAGAGAGTCCTTTTCTACATATCAAT---ACAGATACCAATGAAATTTTCAGTAAGAAGAAAATCCGTGGATTTGAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAGGTGTGACAAACTGCTATTACGCTCGCCCCCTTT-TTT--CATTTTGTTAGGAATTCTTCAAATTCGAAAAAGGCCTTTC---------GTCCCCTTTTAGTTTTTTCATTGCCTAAAATTTACATTA-GGAAATGAAGTCGGGATAGCTCAGCCGGTAGAGCAGAGGACTGAAAATCCTCGTGTCACCA-1000001?0001001?1000010?01--------AGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAATCTCGTGGAGCAGTGCGACTTGAGAACATGTTCAAATCCAAAGCCAAGAGTGCTGGGT-CCATCTTATGGGTCTGGCCTCGTCGAACAAAAA-ATCGGC-GCAGCAGCGCCAAGGAATTT--AGTAAAGAGAATGCTAGCTTGTGAAGCTCGCTTTTAGAGCTTGCGCGGG---TTGCGTCTTTAG-TAAGAAAATGACTCTCGTCAATGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAATCTTTGAACGCAAGTTGCGCCTAAAGCTCATAAGGTTGAGGGCACGTTTGCTTGGGTGTCACGCATCGTGTCGCTCCC-CTCGTGTTTTGGGGTTGGAGCGGATCATGGCCTCCCTGGCCCAACCTTGGGTGTGGTTGGCCGAAAATCTTGTCCATGATGATGTTCGATGTCTTGGCGTGTGGTGGG-TGTACGTAGTGTGCAAAAAGCCACGACTTGCGCAACTGGATTGT--CGGCT-TGACCCTTTGGAGCAGATGGACTTTGCTCTTTGACTGCGACCCCAAGTCAGGCGGGACTACCCGCTGACTT------00001011010000010001010000100011
		Cuscuta_vandevenderi_1079       -----TACGGACTTAATTGGATTGAGCCTTGGTATGGAAACTTATTAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAAT-AAAGAAAAGGGGCAATCCTGAGCCAAATCCTTTTTATATTTTATTATTTTATAAAAAACTAAGGATAGGTGCAGAGACTCAACGGAAGCTTTTCTAACAAAT---AAAAAAAAGGTTGATAAATATTTTTACAAAGTTATTTGAGAATAAAGAGAGAGTCCTTTTCTACATATCAAT---ACAGATACCAATGAAATTTTCAGTAAGAAGAAAATCCGTGGATTTGAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAGGTGTGACAAACTGGTATTACGCTCGCCCCCTTT-TTT--CATTTTGTTAGGAATTCTTCAAATTCGAAAAAGGCCTTTC---------GTCCCCTTTTAGTTTTTTCATTGCCTAAAATTTACATTA-GGAAATGAAGTCGGGATATCTCAGCCGGTACA?CAGAGGACTGAAAATCCTCGTGTC-----1000001?0001001?1000010?01TCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAATCTCGTGGAGCAGTGCGACTTGAGAACATGTTCAAATCCAAAGCCAAGAGTGCTGGGT-CCATCTTATGGGTCTGGCCTCGTCGAACAAAAA-ATCGGC-GCAGCAGCGCCAAGGAATTT--AGTAAAGAGAATGCTAGCTTGTGAAGCTCGCTTTGAGAGCTTGCGCGGG---TTGCGTCTTTAG-TAAGAAAATGACTCTCGTCAATGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAATCTTTGAACGCAAGTTGCGCCTAAAGCTCATAAGGTTGAGGGCACGCTTGCTTGGGTGTCACGCATCGTGTCGCTCCC-CTCGTGTTTTGGGGTTGGAGCGGATCATGGCCTCCCGGGCCCAACCTTGGGTGTGGTTGGCCGAAAATCTTGTCCATGATGATGTTCGATGTCTTGGCGTGTGGTGGG-TGTACGTAGTGTGCAAAAAGCCACGACTTGCGCAACTGGATTGT--CGGCT-TGACCCTTTGGAGCAGATGGACTTTGCTCTTTGACTGCGACCC----------------------------------00001011010000010001010000100011
		Cuscuta_vandevenderi_1078       -----TACGGACTTAATTGGATTGAGCCTTGGTATGGAAACTTATTAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAAT-AAAGAAAAGGGGCAATCCTGAGCCAAATCCTTTTTATATTTTATTATTTTATAAAAAACTAAGGATAGGTGCAGAGACTCAACGGAAGCTTTTCTAACAAAT---AAAAAAAAGGTTGATAAATATTTTTACAAAGTTATTTGAGAATAAAGAGAGAGTCCTTTTCTACATATCAAT---ACAGATACCAATGAAATTTTCAGTAAGAAGAAAATCCGTGGATTTGAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAGGTGTGACAAACTGGTATTACGCTCGCCCCCTTT-TTT--CATTTTGTTAGGAATTCTTCAAATTCGAAAAAGGCCTTTC---------GTCCCCTTTTAGTTTTTTCATTGCCTAAAATTTACATTA-GGAAATGAAGTCGGGATATCTCAGCCGGTACA?CAGAGGACTGAAAATCCTCGTGTC-----1000001?0001001?1000010?01TCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAATCTCGTGGAGCAGTGCGACTTGAGAACATGTTCAAATCCAAAGCCAAGAGTGCTGGGT-CCATCTTATGGGTCTGGCCTCGTCGAACAAAAA-ATCGGC-GCAGCAGCGCCAAGGAATTT--AGTAAAGAGAATGCTAGCTTGTGAAGCTCGCTTTGAGAGCTTGCGCGGG---TTGCGTCTTTAG-TAAGAAAATGACTCTCGTCAATGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAATCTTTGAACGCAAGTTGCGCCTAAAGCTCATAAGGTTGAGGGCACGCTTGCTTGGGTGTCACGCATCGTGTCGCTCCC-CTCGTGTTTTGGGGTTGGAGCGGATCATGGCCTCCCGGGCCCAACCTTGGGTGTGGTTGGCCGAAAATCTTGTCCATGATGATGTTCGATGTCTTGGCGTGTGGTGGG-TGTACGTAGTGTGCAAAAAGCCACGACTTGCGCAACTGGATTGT--CGGCT-TGACCCTTTGGAGCAGATGGACTTTGCTCTTTGACTGCGACCC----------------------------------00001011010000010001010000100011
		Cuscuta_vandevenderi_1058       GACGCTACGGACTTAATTGGATTGAGCCTTGGTATGGAAACTTATTAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAAT-AAAGAAAAGGGGCAATCCTGAGCCAAATCCTTTTTATATTTTATTATTTTATAAAAAACTAAGGATAGGTGCAGAGACTCAACGGAAGCTTTTCTAACAAAT---AAAAAAAAGGTTGATAAATATTTTTACAAAGTTATTTGAGAATAAAGAGAGAGTCCTTTTCTACATATCAAT---ACAGATACCAATGAAATTTTCAGTAAGAAGAAAATCCGTGGATTTGAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAGGTGTGACAAACTGCTATTACGCTCGCCCCCTTT-TTT--CATTTTGTTAGGAATTCTTCAAATTCGAAAAAGGCCTTTC---------GTCCCCTTTTAGTTTTTTCATTGCCTAAAATTTACATTA-GGAAATGAAGTCGGGATAGCTCAGCCGGTAGAGCAGAGGACTGAAAATCCTCGTGTCACCAA1000001?0001001?1000010?01TCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAATCTCGTGGAGCAGTGCGACTTGAGAACATGTTCAAATCCAAAGCCAAGAGTGCTGGGT-CCATCTTATGGGTCTGGCCTCGTCGAACAAAAA-ATCGGC-GCAGCAGCGCCAAGGAATTT--AGTAAAGAGAATGCTAGCTTGTGAAGCTCGCTTTGAGAGCTTGCGCGGG---TTGCGTCTTTAG-TAAGAAAATGACTCTCGTCAATGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAATCTTTGAACGCAAGTTGCGCCTAAAGCTCATAAGGTTGAGGGCACGCTTGCTTGGGTGTCACGCATCGTGTCGCTCCC-CTCGTGTTTTGGGGTTGGAGCGGATCATGGCCTCCCGGGCCCAACCTTGGGTGTGGTTGGCCGAAAATCTTGTCCATGATGATGTTCGATGTCTTGGCGTGTGGTGGG-TGTACGTAGTGTGCAAAAAGCCACGACTTGCGCAACTGGATTGT--CGGCT-TGACCCTTTGGAGCAGATGGACTTTGCTCTTTGACTGCGACCC----------------------------------00001011010000010001010000100011
		Cuscuta_deltoidea               GACGCTACGGACTTAATTGGATTGAGCCTTGGTATGGAAACTTATTAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAAT-AAAGAAAAGGGGCAATCCTG?GCCAAATCCTTTTTATATTTTATTATTTTATAAAAAACTAAGGATAGGTGCAGAGACTCAACGGAAGCTTTTCTAACAAAT---AAAAAAAAGGTTGATAAATATTTTTACAAAGTTATTTGAGAATAAAGAGAGAGTCCTTTTCTACATATCAAT---ACAGATACCAATGAAATTTTCAGTAAGAAGAAAATCCGTGGATTTGAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAGGTGTGACAAACTGCTATTACGCTCGCCCCCTTT-TTT--CATTTTGTTAGGAATTCTTCAAATTCGAAAAAGGCCTTTC---------GTCCCCTTTTAGTTTTTTCATTGCCTAAAATTTACATTA-GGAAATGAAGTCGGGATAGCTCAGCCGGTAGAGCAGAGGACTGAAAATCCTCGTGTCACCA-1000001?0001001?1000010?01TCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAATCTCGTGGAGCAGTGCGACTTGAGAACATGTGCAAATCCAAAGCCAAGAGTGCTGGGT-CCATCCTATGGGTCTGGCCTCGTCGAACAAAAA-ATCGGC-GCAGCAGCGCCAAGGAATTT--AGTAAAGAGAATGCTAGCTTGTGAAGCTCGCTTTGAGAGCTTGCGCGGG---TTGCGTCTTTAG-TAAGAAAATGACTCTCGTCAATGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAATCTTTGAACGCAAGTTGCGCCTAAAGCCCATAAGGTTGAGGGCACGTTTGCTTGGGTGTCACGCA-CGTGTCGCTCCC-CTCGTGTTTTGGGGTTGGAGCGGATCATGGCCTCCCGGGCCCAACCTTGGGTGTGGTTGGCCGAAAATCTTGTCCATGATGATGTTCGATGTCTTGGCGTGTGGTGGG-TGTACGTAGTGTGCAAAAAGCCACGCCTTGCGCAACTGGATTGT--CGGCT-TGACCCTTTGGAGCAGATGGACTTTGCTCTTTGACTGCGACCCCAA-------------------------------00001011010000010001110000100011
		Cuscuta_colombiana              GACGCTACGGACTTAATTGGATTGAGCCTTGGTATGGAAACTTAATAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAAT-AAAGAAAAGGGGCAATCCTGAGCCAAATTCTTTTT-TATTTT--------ATAAAAAACTAAGGATAGGTGCAGAGACTCAACGGAAGTTTTTCTAACAAATG-GAAAAAATAGGTTGATAAATATTTTTAAAAACTTATTTGAGAATAAAGAGAGAGTCCTTT---------CAAT---ACAGATACCAATGAAATTTTCAGTAAGAAGAAAATCCGTGGATTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAGGTGTGACAAACTTATATTAAGCTCGCCCCCTTT-TTT--CATTTGGT---------------TTCGAAAAAGGCCTTTCAAATT-ATACTCCCATTTTAGTTTTTTCATTGCCTAAAATTTACATTA-GGAAATGAAGTCGGGATAGCTCAGCCGGTACA{GT}CATAGGACTGAAAATCCTCGTGTCACCAA1010?1010011001?1010000101------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
		Cuscuta_ariesteguietae          GACGCTACGGACTTAATTGGATTGAGCCTTGGTATGGAAACTTAATAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAAT-AAAGAAAAGGGGCAATCCTGAGCCAAATTCTTTTT-TATTTT--------ATAAAAAACTAAGGATAGGTGCAGAGACTCAACGGAAGTTTTTCTAACAAATG-GAAAAAATAGGTTGATAAATATTTTTAAAAACTTATTTGAGAATAAAGAGAGAGTCCTTT---------CAAT---ACAGATACCAATGAAATTTTCAGTAAGAAGAAAATCCGTGGATTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAGGTGTGACAAACTTATATTAAGCTCGCCCCCTTT-TTT--CATTTGGT---------------TTCGAAAAAGGCCTTTCAAATT-ATACTCCCATTTTAGTTTTTTCATTGCCTAAAATTTACATTA-GGAAATGAAGTCGGGATAGCTCAGCCGGTACA{GT}CATAGGACTGAAAATCCTCGTGTCACCAA1010?1010011001?1010000101---GTACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAATCTCGTGGAGCAGCGCGACTTGAGAACATGTCCAATTCCAAAACAAAGAGTGCCGGGT-CCATCCTATGGGTCCAGCCTCTGCGAACAAAAACTCCGGC-GCAGCAGCGCCAAGGAATTT---GTGATGAGAGCGTCGGCTTGCAAAGCTCGCCCTTAGAGCTTGCGCGGG---TTGCGTCT-ACG-TAAGAAAATGACTCTCGTCAATGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGCGAACCATCGAATCTTTGAACGCAAGTTGCGCCTGAAGCCCATAAGGTTGAGGGCACGTTTGCTTGGGTGTCACGCATCGTGTCGCTCCCCCCCGCGCTTTGGGGTTGGAGCGGAGAATGGCCTCCCGGGCCCAACCTCGGGCGTGGTTGGCCGAAAATCTTGTCCATGATGATGTT-GATGTCTTGGCGTGTGGTGGG-TGTACCAATTG-GTATATGGCCACGTCTTGCACGGCCCGATTGT--CGGCA-TGGCCCTTTGGAGTAGACGGAGTTTGCTCTTTGATTGCGACCCCAA-------------------------------000010010?1000010101000001110011
		Cuscuta_sidarum_751             -------------------GATTGAGCCTTGGTATGGAAACTTACTAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAAT-AAAGAAAAGGGGCAATCCTGAGCCAAATCCTTTTT-TATTTT--------ATAAAAAACTAAGGATAGGTGCAGAGACTCAACGGAAGTTTTTCTAACAAATG-GAAAAAATAGGTTGATAAATATTTTTAAAAACTTATTTGAGAATAAAGAGAGAGTCCTTTTCTACATATCAAT---ACAGATACCAATGAAATTTTCAGTAAGAAGAAAATCCGTGGATTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAGGTGTGACAAACTTATATTAAGCTCGCCCCCTTT-TTT--CATTTGGT---------------TTCGAAAAAGGCCTTTCAAATT-ATACTCCCATTTTAGTTTTTTCATTGCCTCAAATTTACATTA-GGAAATGAAGTCGGGATAGCTCAGCCGGTAGAGCAGAGGACTGAAAATCCTCGTGTCACCA-1010?1010001001?1010000101TCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAATCTCGTGGAGCAGCGCGACTTGAGAACATGTCCAAATCCAAAACAAAGAGTGCCGGGT-CCATCATATGGGTCCAGCCTCTGCGAACAAAAACACCGGC-GCAGCAGCGCCAAGGAATTT---GTGATGAGAACGTCGGCTTGCAAAGCTCGCCCTTAGAGCTTGCGCGGG---TTGCGTCT-ACG-TAAGAAAATGACTCTCGTCAATGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAATCTTTGAACGCAAGTTGCGCCTGAAGCCCATAAGGTTGAGGGCACGTTTGCTTGGGTGTCACGCATCGTGTCGTTCCC-CCCGCGCTTTGGGGTTGGAGCGGAGAATGGCCTCCCGGGCCCAACCTCGGGCGTGGTTGGCCGAAAATCTTGTCCATGATGATGTT-GATGTCTTGGCGTGTGGTGGG-TGTACCAGGTG-GTATATGGCCACGTCTTGCACGGCCCGATTGT--CGGCA-TGGCCCTTTGGAGTAGACGGAGTTTGCTCTTTGATTGCGACCCCAAGTCAAGCGGGACTACCCGCTGAGTTTAAGCA000010010?1000010101010001110011
		Cuscuta_sidarum_519             -----TACGGACTTAATTGGATTGAGCCTTGGTATGGAAACTTACTAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAAT-AAAGAAAAGGGGCAATCCTGAGCCAAATCCTTTTT-TATTTT--------ATAAAAAACTAAGGATAGGTGCAGAGACTCAACGGAAGTTTTTCTAACAAATG-GAAAAAATAGGTTGATAAATATTTTTAAAAACTTATTTGAGAATAAAGAGAGAGTCCTTTTCTACATATCAAT---ACAGATACCAATGAAATTTTCAGTAAGAAGAAAATCCGTGGATTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAGGTGTGACAAACTTATATTAAGCTCGCCCC-TTT-TTT--CATTTGGT---------------TTCGAAAAAGGCCTTTCAAATT-ATACTCCCATTTTAGTTTTTTCATTGCCTCAAATTTACATTA-GGAAATGAAGTCGGGATAGCTCAGCCGGTAGAGCAGAGGACTGAAAATCCTCGTGTCAC---1010?1010001011?1010000101----AACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAATCTCGTGGAGCAGCGCGACTTGAGAACATGTCCAAATCCAAAACAAAGAGTGCCGGGT-CCATCATATGGGTCCAGCCTCTGCGAACAAAAACACCGGC-GCAGCAGCGCCAAGGAATTT---GTGATGAGAACGTCGGCTTGCAAAGCTCGCCCTTAGAGCTTCCGCGGG---TTGCGTCT-ACG-TAAGAAAATGACTCTCGTCAATGGATATCTCGGCTCTTGCATCGATGAAGAACGCAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAATCTTTGAACGCAAGTTGCGCCTGAAGCCCATAAGGTTGAGGGCACGTTTGCTTGGGTGTCACGCATCGTGTCGTTCCC-CCCGCGCTTTGGGGTTGGAGCGGAGAATGGCCTCCCGGGCCCAACCTCGGGCGTGGTTGGCCGAAAATCTTGTCCATGATGATGTT-GATGTCTTGGCGTGTGGTGGG-TGTACCAGGTG-GTATATGGCCACGTCTTGCACGGCCCGATTGT--CGGCA-TGGCCCTTTGGAGTAGACGGAGTTTGCTCTTTGATTGCGACCCCAAGTCAAGCGGGACTACCCGCTGAGTTTAAGCA000010010?1000010101010001110011
		Cuscuta_sidarum_1005            -------------------GATTGAGCCTTGGTATGGAAACTTACTAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAAT-AAAGAAAAGGGGCAATCCTGAGCCAAATCCCTTTT-TATAAA--------ATAAAAAACTAAGGATAGGTGCAGAGACTCAACGGAAGCTTTTCTAACAAATG-GAAAAAATAGGTTGATAAATATTTTTAAAAACTTATTTGAGAATAAAGAGAGAGTCCTTTTCTACATATCAAT---ACAGATACCAATGAAATTTTCAGTAAGAAGAAAATCCGTGGATTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAGGTGTGACAAACTTATATTAAGCTCGCCCCCTTT-TTT--CATTTGGT---------------TTCGAAAAAGGCCTTTCAAATT-ATACTCCCATTTTAGTTTTTTCATTGCCTAAAATTTACATTA-GGAACTGAAGTCGGGATAGCTCAGCCGGTAGAGCAGAGGACTGAAAATCCTCGTGTCACCA-1010?1010001001?1010000101-----------TTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAATCTCGTGGAGCAGCGCGACTTGAGAACATGTCCAAATCCAAAACAAAGAGTGCCGGGT-CCGTCATATGGGTCCAGCCTCTGCGAACAAAAACACCGGC-GCAGCAGCGCCAAGGAATTT---GTGATGAGAACGTCGGCTTGCAAAGCTCGCCCTTAGAGCTTGCGCGGG---TTGCGTCT-ACG-TAAGAAAATGACTCTCGTCAATGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACATGGTGTGAATTGCAGAATCCCGTGAACCATCGAATCTTTGAACGCAAGTTGCGCCTGAAGCCCATAAGGTTGAGGGCACGTTTGCTTGGGTGTCACGCATCGTGTCGCTCCC-CCTGCGCTTTGGGGTTGGAGCGGAGAATGGCCTCCCGGGCCCAACCTCGGGCGTGGTTGGCCGAAAATCTTGTCCATGATGATGTT-GATGTCTTGGCGTGTGGTGGG-TGTACCAATTG-GTATATGGCCACGTCTTGCACGGCCCGATTGT--CGGCA-TGGCCCTTTGGAGTAGACGG---------------------------------------------------------000010010?1000010101010001110011
		Cuscuta_punana                  GACGCTACGGACTTAATTGGATTGAGCCTTGGTATGGAAACTTACTAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAAT-AAAGAAAAGGGGCAATCCTGAGCCAAATCCTTTTT-TATTTT--------ATAAAAAACTAAGGATAGGTGCAGAGACTCAACGGAAGCTTTTCTAACAAATG-GAAAAAATAGGTTGATAAATATTTTTAAAAACTTATTTGAGAATAAAGAGAGAGTCCTTTTCTACATATCAAT---ACCGATACCAATGAAATTTTCAGTAAGAAGAAAATCCGTGGATTTTCAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAGGTGTGACAAACTAATATTATGCTCGCCCGCTTT-TTT--CATTTGGTTAAGAATTT--------------------TTCAAATTTATACTCCCCTTTTCGTTTTTTCATTGCCTAAAATTTACATTA-GGAAATGAAGTCGGGATAGCTCAGCCGGTAGAGCAGAGGACTGAAAATCCTCGTGTCACCA-1010?1010001001?1000100001-----------------------AACCTGCGGAAGGATCATTGTCGAAATCCTGTTAAGCAGCGCGACCTGAGAACATGTCCAAATCCAAAACCAAGAGTGCCGGGT-CCATCATATGGGTCCAGCCTCTGCGAACAAAAACACCGGC-GCAGCAGCGCCAAGGAATTT--TGTAATGAGAATGCCGTCTTGCGAAGCTCTCTTTTAGAGCTTGTGCGGG---CTGCGTCT-AAG-TAAGAAAATGACTCTCGTCAATGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAATCTTTGAACGCAAGTTGCGCCTGAAGCCCATAAGGTTGAGGGCACGTTTGCTTGGGTGTCACGCATCGTGTCGCTCCC-CTCGTGCTTTGGGGTTGGAGCGGATCATGGCCTCCCGGGCCCAACCTCGGGCGTGGTTGGCCGAAAATCTTGTCCACGATGCTGTTTGATGTCTTGGCGTGTGGTGGG-TGTACCAATCG-GTATATAGCCACGTCTTGCACGGCCCGATCGT--CGGCT-TGACCCTTTGGAGCAGGCGGAGTTTGCTCTTTGATTGCGACCCCAAGTCAAGCGGGACTACCCG-------------00001001010000010101010000110011
		Cuscuta_gracillima_621          ---GCTACGGACTTAATTGGATTGAGCCTTGGTATGGAAACTTACTAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAAG-AAAGAAAAGGGGCAATCCTGAGCCAAATCCCTTTT-TATTTCATAAAATTATAAAAAACTAAGGATAGGTGCAGAGACTCAACGGAAGCTTTTCTAACAAATG-GAAAAAATAGGTTGATAAATATTTTTAAAAACTTATTTGAGAATAAAGAGAGAGTCCTTTTCCACATATCAAT---ACAGATACCAATGAAATTTTCAGTAAGAAGAAAATCCGTGGATTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAGGTGTGACAAACTGATATTATGCTGGCCCCCTTT-TTT--CATTTGGTTAGGAATTG--------------------TTCAAATT-ATACTCCCCTTTTAGTTTTTTCATTGCCTAAAATTTACATTA-GGAAATGAAGTCGGGATAGCTCAGCCGGTAGAGCAGAGGACTGAAAATCCTCGTGTCAC---101000010001001?1000100101--------------------GTGAACCTGCGGAAGGATCATTGTCGAAATCTCGTGGAGCAGCGTGACTTGAGAACATGTCCAAATCCAATACCAAGGGCGCCGGGT-CCATCATATGGGTCCAGCCTCTGCGAACAAAAACACCGGC-GCAGCAGCGCCAAGGAATTT---GTAATGAGAACGCTGGCTTGCAAAGCTCGCCCTTAGAGCTTGCGCGGG---TTGCGTCT-ACG-TAAGAAAATGACTCTCGGCAATGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAATCTTTGAACGCAAGTTGCGCCTGAAGCCCATAAGGTTGAGGGCACGTTTGCTTGGGTGTCACGCATCGTGTCGCTCCC-CTCGCGCTTTGGGGTTGGAGCGGATAATGGCCTCCCGGGCCCAACATCGGGCGTGGTTGGCCGAAAATCTTGTCCATGATGATGTTCGATGTCTTGGCGTGTGGTGGG-TGTACCAATTG-GTATATAGCCTCGTCTTGCACGGCCCGATTGT--CGGCT-TGGCCCTTTGGAGTAGACGGAGTTTGCTCTTTGATTGCGACCCCAAGTCAAGCGGGACTACCCGCTGAGTTTAAGCA000010010?1000010101010000110011
		Cuscuta_gracillima_600          -----TACGGACTTAATTGGATTGAGCCTTGGTATGGAAACTTACTAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAAT-AAAGAAAAGGGGCAATCCTGAGCCAAATCCCTTTT-TATTTTATAAAATTATAAAAAACTAAGGATAGGTGCAGAGACTCAACGGAAGCTTTTCTAACAAATG-GAAAAAATAGGTTGATAAATATTTTTAAAAACTTATTTGAGAATAAAGAGAGAGTCCTTTTCTACATATCAAT---ACAGATACCAATGAAATTTTCAGTAAGAAGAAAATCCGTGGATTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAGGTGTGACAAACTGATATTATGCTCGCCCCCTTT-TTT--CATTTGGTTAGGAATTG--------------------TTCAAATT-ATACTCCCCTTTTAGTTTTTTCATTGCCTAAAATTTACATTA-GGAAATGAAGTCGGGATAGCTCAGCCGGTAGAGCAGAGGACTGAAAATCCTCGTGTCACCAA101000010001001?1000100101--------------------------------AAGGATCATTGTCGAAATCTCGTGGAGCAGCGTGACTTGAGAACATGTCCAAATCCAATACCAAGGGCGCCGGGT-CCATCATATGGGTCCAGCCTCTGCGAACAAAAACACCGGC-GCAGCAGCGCCAAGGAATTT---GTAATGAGAACGCTGGCTTGCAAAGCTCGCCCTTAGAGCTTGCGCGGG---TTGCGTCT-ACG-TAAGAAAATGACTCTCGGCAATGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAATCTTTGAACGCAAGTTGCGCCCGAAGCCCATAAGGTTGAGGGCACGTTTGCTTGGGTGTCACGCATCGTGTCGCTCCC-CTCGCGCTTTGGGGTTGGAGCGGATAATGGCCTCCCGGGCCCAACATCGGGCGTGGTTGGCCGAAAATCTTGTCCATGATGATGTTCGATGTCTTGGCGTGTGGTGGG-TGTACCAATTG-GTATATAGCCTCGTCTTGCACGGCCCGATTGT--CGGCT-TGGCCCTTTGGAGTAGACGGAGTTTGCTCTTTGATTGCGACCCCAA-------------------------------000010010?1000010101010000110011
		Cuscuta_gracillima_599          -----TACGGACTTAATTGGATTGAGCCTTGGTATGGAAACTTACTAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAAT-AAAGAAAAGGGGCAATCCTGAGCCAAATCCCTTTT-TATTTTATAAAATTATAAAAAACTAAGGATAGGTGCAGAGACTCAACGGAAGCTTTTCTAACAAATG-GAAAAAATAGGTTGATAAATATTTTTAAAAACTTATTTGAGAATAAAGAGAGAGTCCTTTTCTACATATCAAT---ACAGATACCAATGAAATTTTCAGTAAGAAGAAAATCCGTGGATTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAGGTGTGACAAACTGATATTATGCTCGCCCCCTTT-TTT--CATTTGGTTAGGAATTG--------------------TTCAAATT-ATACTCCCCTTTTAGTTTTTTCATTGCCTAAAATTTACATTA-GGAAATGAAGTCGGGATAGCTCAGCCGGTAGAGCAGAGGACTGAAAATCCTCGTGTCACCAA101000010001001?1000100101--GTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGAATCATTGTCGAAATCTCGTGGAGCAGCGTGACTTGAGAACATGTCCAAATCCAATACCAAGGGCGCCGGGT-CCATCATATGGGTCCAGCCCCTGCGAACAAAAACACCGGC-GCAGCAGCGCCAAGGAATTT---GCAATGAGAACGCTGGCTTGCAAAGCTCGCCCTTAGAGCTTGCGCGGG---TTGCGTCT-ACG-TAAGAAAATGACTCTCGGCAATGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAATCTTTGAACGCAAGTTGCGCCTGAAGCCCATAAGGTTGAGGGCACGTTTGCTTGGGTGTCACGCATCGTGTCTCTCCC-CTCGCGCTTTGGGGTTGGAGCGGATAATGGCCTCCCGGGCCCAACGTCGGGCGTGGTTGGCCGAAAATCTTGTCCATGATGATGTTCGATGTCTTGGCGTGTGGTGGG-TGTACCAATTG-GTATATAGTCTCGTCTTGCACGGCCCGATTGT--CGGCT-TGGCCCTTTGGAGTAGACGGAGTTTGCTCTTTGATTGCGACCCCAAGTCAAGCGGGACTACCCGCTGAGTTTAAGCA000010010?1000010101010000110011
		Cuscuta_gracillima_620          GACGCTACGGACTTAATTGGATTGAGCCTTGGTATGGAAACTTACTAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAAT-AAAGAAAAGGGGCAATCCTGAGCCAAATCCCTTTT-TATTTTATAAAATTATAAAAAACTAAGGATAGGTGCAGAGACTCAACGGAAGCTTTTCTAACAAATG-GAAAAAATAGGTTGATAAATATTTTTAAAAACTTATTTGAGAATAAAGAGAGAGTCCTTTTCTACATATCAAT---ACAGATACCAATGAAATTTTCAGTAAGAAGAAAATCCGTGGATTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAGGTGTGACAAACTGATATTATGCTCGCCCCCTTT-TTT--CATTTGGTTAGGAATTG--------------------TTCAAATT-ATACTCCCCTTTTAGTTTTTTCATTGCCTAAAATTTACATTA-GGAAATGAAGTCGGGATAGCTCAGCCGGTAGAGCAGAGGACTGAAAATCCTCGTGTCACCAA101000010001001?1000100101TCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTGTCGAAATCTCGTGGAGCAGCGTGACTTGAGAACATGTCCAAATCCAATACCAAGGGCGCCGGGT-CCATCATATGGGTCCAGCCTCTGCGAACAAAAACACCGGC-GCAGCAGCGCCAAGGAATTT---GTAATGAGAACGCTGGCTTGCAAAGCTCGCCCTTAGAGCTTGCGCGGG---TTGCGTCT-ACG-TAAGAAAATGACTCTCGGCAATGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAATCTTTGAACGCAAGTTGCGCCTGAAGCCCATAAGGTTGAGGGCACGTTTGCTTGGGTGTCACGCATCGTGTCGCTCCC-CTCGCGCTTTGGGGTTGGAGCGGATAATGGCCTCCCGGGCCCAACGTCGGGCGTGGTTGGCCGAAAATCTTGTCCATGATGATGTTCGATGTCTTGGCGTGTGGTGGG-TGTACCAATTG-GTATATAGCCTCGTCTTGCACGGCCCGATTGT--CGGCT-TGGCCCTTTGGAGTAGACGGAGTTTGCTCTTTGATTGCGACCCCAAGTCAAGCGGGACTACCCGCTGAGTTTAAGCA000010010?1000010101010000110011
		Cuscuta_gracillima_463          ------------TTAATTGGATTGAGCCTTGGTATGGAAACTTACTAAGTGATCACTTTCAAATTCAGAGAAACCCTGGAAT-AAAGAAAAGGGGCAATCCTGAGCCAAATCCCTTTT-TATTTTATAAAATTATAAAAAACTAAGGATAGGTGCAGAGACTCAACGGAAGCTTTTCTAACAAATG-GAAAAAATAGGTTGATAAATATTTTTAAAAACTTATTTGAGAATAAAGAGAGAGTCCTTTTCTACATATCAAT---ACAGATACCAATGAAATTTTCAGTAAGAAGAAAATCCGTGGATTTTAAAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAGGTGTGACAAACTGATATTATGCTCGCCCCCTTT-TTT--CATTTGGTTAGGAATTG--------------------TTCAAATT-ATACTCCCCTTTTAGTTTTTTCATTGCCTAAAATTTACATTA-GGAAATGAAGTCGGGATAGCTCAGCCGGTAGAGCAGAGGACTGAAAATC-------------101000010001001?1000100101------------------------------GGAAGGATCATTGTCGAAATCTCGTGGAGCAGCGTGACTTGAGAACATGTCCAAATCCAATACCAAGGGCGCCGGGT-CCATCATATGGGTCCAGCCTCTGCGAACAAAAACACCGGC-GCAGCAGCGCCAAGGAATTT---GTAATGAGAACGCTGGCTTGCAAAGCTCGCCCTTAGAGCTTGCGCGGG---TTGCGTCT-ACG-TAAGGAAATGACTCTCGGCAATGGATATCTCGGCTCTTGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAATCTTTGAACGCAAGTTGCGCCTGAAGCCCATAAGGTTGAGGGCACGTTTGCTTGGGTGTCACGCATCGTGTCGCTCCC-CTCGCGCTTTGGGGTTGGAGCGGATAATGGCCTCCCGGGCCCACCATCGGGCGTGGTTGGCCGAAAATCTTGTCCATGATGATGTTCGATGTCTTGGCGTGTGGTGGG-TGTACCAATTG-GTATATAGCCTCGTCTTGCACGGCCCGATTGT--CGGCT-TGGCCCTTTGGAGTAGACGGAGTTTGCTCTTTGATTGCGAACCCAGGTCAAGCGGGACTACCCGCTGAGTTTAAGCA000010010?1000010101010000110011
	;
END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;