NEXUS
[File created by TreeBASE:  7/26/07  20:57:26]
[Matrix accession#: M629]

BEGIN TAXA;
	TITLE M629;
	DIMENSIONS  NTAX=27;
	TAXLABELS
		Sipunculus_nudus	Lumbricus_terrestris	Liocheles_waigiensis	Tetragnatha_mandibulata	Allotheura_sp.	Magicicada_tredecim	Acanthopleura_japonica	Latimeria_chalumnae	Protopterus_annectens	Xenopus_laevis	Scolecomorphus_crosnieri	Notosaria_nigricans	Terebratulina_septentrionalis_164	Terebratulina_septentrionalis_163	Terebratulina_retusa_677	Terebratulina_retusa_678	Cancellothyris_hedleyi	Stenosarina_crosnieri	Liothyrella_neozelanica_289_Sues	Liothyrella_neozelanica_290	Liothyrella_uva_1024	Liothyrella_uva_1072	Liothyrella_uva_930	Gryphus_vitreus_521	Gryphus_vitreus_525	Dyscolia_sp.	Abyssothyris_sp.
	;
END;

BEGIN CHARACTERS;
	TITLE M629;
	DIMENSIONS NCHAR=426;
	FORMAT DATATYPE = DNA MISSING = N GAP = -  ;
	MATRIX
		Sipunculus_nudus                        NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGGCGGTGCTTCA--CCAAACTAGGGGAGCCTGTCGCTTAGTTCGATAATCCGCGATAAACCCA-ACCTAATCTTGA----CCCCC----AGCCTGTGTATTGCC-GTCGCAGGCCTACCTCC--AAA-G-A-GA----GTAGACACACAAG-CCACATTCATCGCTACC---ACGTCAGGT-AAAATGCAGCCAGTGAT-TAGGGGCTGA-TAGGCTAC-AATTCCCG----ATTGTC--ACTGGAACCAG------CGGGGAACCCCG---TCGCG-AAAATGGACTTAGAA-GTAATTTTCA---CTC-ATCACGTGAAAATGAA-ACCTGCCATCTGAAGCGT
		Lumbricus_terrestris                    NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGGCGGTGTCTTA--TCAACCCAGGGGAACCTGTCTCATAACTCGATAACCCACGAATT-CCTC-ACCCTCTCTAGAT---TCTAC----AGCCTGTGTACTGCC-GTCGTAAGCACACCCCT-AAAA-G-A-AAGAA-GTGTGCAGACATG-ATTAAA-CTC-ATATA-----CGTCAGGTCAAAGTGCAGCCCATGGG-AGGGAGATGA-TGGGTTAC-ACCCTAAAC---AAAGAT--ACGGAATAT--------AGTACTAAAAGCTA-TAT---AAATTATTACTTGGTTGTAACGTTTC---TTC-AAAAC--TAAAGTGAATA-TGAATCTAAGNNNNNN
		Liocheles_waigiensis                    NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGGCGGCGTTTTA-AAT-AATTGGAGGAACCTGTTTCTTAA-TTGATAATCCACATCATATCTT-ACCTT-----------ATTTT----TGTTTGTATATCGTT-GTTTTAAGATAATGTAT--ATT-A-A----CT-ATAATCAA-AATTAAAAGT-TTTT-AAAAA------ATCAAATCAAGGTGCAGCTTA-ATA--TGGATGAAA-TGGGTTAC-AATATAAATT--ATATATT-ACGGATTTAA-------TTGAAAATTAATT--TG----AAGGTGGATTCAAAA-GTAATTTAAAA---TT-AAGAAGTTTATTTGAATA-ATAATTTAATGNNNNN
		Tetragnatha_mandibulata                 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGGTGGCATTTTA--TTTTATTAGAGGAACATGTTTATTAA-TCGACATTACACGATTATTTTT-ACTTTTT---------TATAA----ATTTTATATACCTCC-GTC--CAGAATAAATTT-TTAATA------TT-TTATTCAA-AATAA-TATT---AT-AATAA------TTTAGGTAAAGGTGTAGACTTTAAA-TTAGTTTAAA-TGTGTTAC-ATTAAAAA----TTATTT--AAGAATTNNNTTTT---ATAACAATATA----TG----AAAGAGGATTTATAA-GCTACTTTTTAA--TT-AAAATTTTAACTTGAATT-AAA-AATAAATGCGNN
		Allotheura_sp.                          NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGGCGGTATATTA-AACATTATAGAGGAATTTGTACCTTAA-TCGATATTCCCCG-TTAAT-TT-ACCCTGGTTGGT----AAGTC----AACTTGTATATCGCT-GTCGTAAG-ATTATTTT-TAGA-G-A-AATTTTTCA-------ATAA-TAAA-TTTTTATTTA-----TGTCAAGTCAAGGTGCAGTAAATGCC-TAGGGTTGAGATGGGTTAC-AATGTATG----AATACAT-ATGAATATGATT-----TTGTAAAATGTTAT-TG----AAGGTGGATTTAATT-GTAATGTAGCA--TTT--GTTCATGAAACTGAAAG-AGGTCCTAAAATNNNN
		Magicicada_tredecim                     NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGGCGGTAATTTA--TCTAATCAGAGGAATCTGTTTTGTAA-TTGATAATCCACGATAGATTCT-ATTTT-----------AAATA----AATTTGTATACCTCT-GTC--AAGAATGTTTCNCADATA-TCAG-A-ATAATTT-TCAT-----TTGTT-TTAT-TAAT--AAAA-----TGTCAGGTCAAGGTGCAGTTAATTTT-AAAGAAAGAA-TGGATTATTGT----AAAAA---ATGAATTGTTTTCTATAATGAAAA-TCA----TG----AAACTGGATTTGAAA-GTAAATTTCA----TTAAATATGTGTTTTTGAATT-TAGGTCTAAATTATGT
		Acanthopleura_japonica                  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGGCGGTGTTTTACATCCATTTAGGGGAAC-TGTTTAATAA-TCGATAATCCGCG-TT---CTT-ACTTTATTTATCATAGAAAAAATGTAGTTTGTGTATTGCC-GTCATCAGCTTATCCTTTAGGGTG-A-AAT-A-ATAAGC---AG-AT--AAC-TAAT-TAGAGTTTTATGTCAGGTCAAAGTGCAGCTTATAAT-AAAGATAGAA-TGGGTTAC-ATTTTTAAAG--AGAATT--CAGAAATTTA-------TTGAAATTTAAA---TGG---AAGGTGGACTTAATA-GTAATTTTATA--TTT-AGAATAATATAGTGAACA-CGGCTCTAAAAGNNNN
		Latimeria_chalumnae                     NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGGCGGTGCTTCATACCC-CCTAGAGGAGCCTGTTCTAGAA-CCGATAAACCCCGATCAACCTCAACCACACT-TGCT---ATTTC----AGCCTATATACCGCC-GTCGCCAGCCCACCCTGTGAAG-G-AAATACA-ATGGGCAAAAATAA--AAA-AATT-AAAAA-----CGTCAGGTCGAGGTGTAGCAAATGAGATGGGAAGAAA-TGGGCTAC-ATTTTCTACAT-AGAATATTACGAAAAAAACA-----GCGAAACCTGTACTTTG----AAGGAGGATTTAGCA-GTAAAAGGGGA---ATAGAGAGCCCCTCTNNNNNN-NNNNNNNNNNNNNNNN
		Protopterus_annectens                   NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGGCGGTGCCTCACACCCACCTAGAGGAGCCTGTTCTAGAA-CCGATAATCCACGTTTTACCCA-ACCTTCCCTGGCC---ATTTC----AGCCTATATACCGCC-GTCGCCAGCCAACCCCCTGAGG-C--CCACTA-GTTGGCAA-AATAG--ATAGCATC-TAACA-----CGTCAGGTCGAGGTGTAGCACATGGG-AGGGAAGAAA-TGGGCTAC-ATTTTCTAAT--AGAAAAC-ACGGACAACCCC-----ATGAAATTGGGGTT-TT----AAGCTGGATTTAGTA-GTAAGAAAANN---NNNNNNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNN
		Xenopus_laevis                          NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGGCGGTGCTCCAAACCCACCTAGAGGAGCCTGTTCTGTAA-TCGATACCCCTCGCTAAACCTC-ACCACTTCTTGCC---AAACC----CGCCTATATACCACC-GTCGCCAGCCCACCTCGTGAGA-G-ATTCTTA-GTAGGCTT-AATGA-TTTT-TCAT-CAACA-----CGTCAGGTCAAGGTGTAGCATATGAAGTGGGAAGAAA-TGGGCTAC-ATTTTCTACCTTAGAATAA-ACGAAAGATCTCT----ATGAAACCAGAT---CGAGAAAAGGCGGATTTAGCA-GTAAAGAGAAA---CAAGAGAGTTCCTCTTTAAAA-CGGCCCTGGAGCGCGC
		Scolecomorphus_crosnieri                NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGGCGGTG-CCCCACCCAACC-AGAGGAGCCTGTTCTATAA-TCGATAATCCACGCTAAACCTC-ACCACTTTTTGTT---ATTAC----AGTTTATATACCACC-GTCATCAATTAACCTTGTGAAA-G-AAACTTA-GTTGATAA-AATTA--ATAATACT-AAATA-----CGTCAGGTCAAGGTGTAGCATATAAAGTGGAAAGAAA-TGGGCTAC-ATTTTCTTAAAAAGAAAAT-ACGAATTAATGTT----ATGAAAACACATT--TG----AAGGCGGATTTGGAA-GTAAAAAGAA----ACAAGAATATTCTTTTTAATT-AGGATATGAGGSGCGC
		Notosaria_nigricans                     CCCCACTATGGT-AGAGACTAAA-CACAGAGA-TACTGGTAGAGTACT--ACGAATAACCCCTTGAAACCCAAAGAACTTGGCGGCGTTCCAAACCCAATCAGGGGAACCTGTCCTAGAATCTGATAATCCACAACCACCACT-ACTTTTTCTTGCC--GACCCC----AGCTTGTATACCGCC-GTCTTCAGCCCACCTAA-AAAA-GCACAAC-ACGTGTGCCCCAA-AT--CAC-TCAT-CATAA------GTCAGGTCAAGGTGCAGCCAATGAA-AAAGAAGAGA-TGGGTTAC-AGTTTAAAAC---AAAATC-CGAAGTAAAA-------CTGAAATT-AAA---TGA---AAGAAGGACTTGAAA-GTAATGGTGG----CCGAGGAA-CCCCCATGAATA-AGGCACTGGAACGTGT
		Terebratulina_septentrionalis_164       CCCCACTATTCT-AGCC-CTAAAACTTAAA---CGCTTCTAGGGCACT--ACGAA-AAACCTTTAAA-CCCAAAGAAGTTGGCGGCCCTTTATACCCAATCAGGGGAGCCTGTCCTAGAA-CTGATACTCCACAACTAACCCC-ACTTATCCTCGCC---TATC-----AGCCTGTATACCGCC-GTCGCCAGCCCACCTAA-AAAA-----GCC-A-GTATGCTC-AATAG--AAA-CCTC-TAGAA-----CGTCAGGTCAAGGTGCAGCCTATGGA-TAAGAAGAGA-TGGGCTAC-AG----CACC---AAGCCC-AGAAATCTAA-------ATGAAAAAAGA----CA----AAGAAGGACTTGAAA-GTAATGGGG------TAAAGAA-CCCCCATGAATA-GAGCAATAAAGCGT-C
		Terebratulina_septentrionalis_163       CCCCACTATTCT-AGCC-CTAAAAGTTAAA---CGCTTCTAGGGCACT--ACGAA-AAACCTTTAAAACCCAAAGAACTTGGCGGCCCTTTATACCCAATCAGGGGAGCCTGTCCTAGAA-CTGATACTCCACAACTAACCCC-ACTTATCCTCGCC---TATC-----AGCCTGTATACCGCC-GTCGCCAGCCCACCTAA--AAA-----GCC-A-GTATGCTC-AATAG--AAA-CCTC-TAGAA-----CGTCAGGTCAAGGTGCAGCCTATGGA-TAAGAAGAGA-TGGGCTAC-GT-ATTCACC---AAGCCC-AGAAATCTA--------ATGAAAAAAGA----CA----AAGAAGGACTTGAAA-GTAATGGGG------TAAAGAA-CCCCCATGAATA-GAGCAATAAAGCGTGC
		Terebratulina_retusa_677                CCCCACTATTCT-AGCC-CTAAAACTTAAA---CACTTCTAGGGCACT--ACGAA-AGACCTTTAAAACCCAAAGAACTTGGCGGCCCTTTATACCCCATCAGGGGAGCCTGTCCTAGAA-CTGATATTCCACAACTAACCCC-ACTTGTCCTCGCC---CCTC-----AGCCTGTATACCGCC-GTCGCCAGCCCACCTAA-AAAA-----GCC-A-GTATGCCC-AATAG--AAA-CCTC-TAGAA-----CGTCAGGTCAAGGTGCAGTCCATGGA-CAAGAAGAGA-TGGGCTAC-AGTATCCACC---AAGCTC-GGAA-TCCCGA------A-GAAAAAA------GAA---AAGAAGGACTTGAA--GTAATGGGA------CAAAGAA-CCCCCATGAATA-GAGCAATAAAGCGTGC
		Terebratulina_retusa_678                CCCCACTATTCT-AGCC-CTAAAACTTAAA---CACTTCTAGGGCACT--ACGAA-AAACCTTTAAAACCCAAAGAACTTGGCGGCCCTTTATACCCCATCAGGG-AGCCTGTCCTAGAA-CTGATATTCCACAACTAACCCC-ACTTGTCCTCGCC---CCTC-----AGCCTGTATACCGCC-GTCGCCAGCCCACCTA---AAA-A-A-GCC-A-GTATGCCC-AATAG--AAA-CCTC-TAGAA-----CGTCAGGTCAAGGTGCAGTCCATGGA-CAAGAAGAGA-TGGGCTAC-AGTATCCACC---AAGCTC-GGAATCCCGA-------ATGAAAAAAAGA---AA----AAGAAGGACTTGAAA-GTAATGGG------ACAAAGAA-CCCCCATGAATA-GAGCAATAAAGCGTGC
		Cancellothyris_hedleyi                  CCCCACTATTCT-AGCC-TTAAAACTCAAA---CGCTTCTAGGGCACT--ACGAA-AAACCTTTAAAACCCAAAGAACTTGGCGGCCCTTTATACCCAATCAGGGGAGCCTGTCCTAGAA-TTGATACCCCACACCTCCCACA-ACTTGCCCTCGCC----CTCCC---AGCCTGTATACCGCCTGTCGCCAGCC-ACCTA---AAA-A-A-AGCAA-GTATGCCC-AATAG-TAA--CCAC-TAGAA-----CGTCAGGTCAAGGTGCAGCCTATGAG-CAAGAAGAGAATGGGCTAC-AGTCTCTAAC---AAACTC-AGAAGTCTAA-------ATGAAAAAAAGA---CTA---AAGAAGGACTTGAAA-GTAATGGG-----AGCAAGGAG-CCCCCATGAATA-GAGCAATAAAGTGTGC
		Stenosarina_crosnieri                   CCCCACTATTCT-AGAC-AC--AACCCCCG---TACTTCTAGGG-ACT--ACGTAAAAAACTTTAAAACCCAAAGAACTTGGCGGCATTTCACACCCAATCAGGGGAGCCTGTCCTAGAA-CTGATACCCCACAACTAACCCT-ACTTGCGCTTGTT---CCCC-----AGCTTGTATACCGCC-GTCGACAGCCCACCTAC-TAAA-G-A-AAC-A-GTATGCCCCAAGGA--AAAATCCC-TATA-------GTCAGGTCAAGGTGCAGCCAATGCG-CAAGAAGAGA-TGGGCTAC-AATAACCAAC---AAAATC-AAACCTCCCA-------ATGAAAAAAGAG---CA----AAGAAGGACTTGAAA-GTAACANCAA---CCCAAAGTA-TCCCTGT-AATA-GGGCAATAAAATGTGC
		Liothyrella_neozelanica_289_Sues        NNNNNNNNNNNNNNNNN-NNNNNNNNNNAA---TANNNCTAGG--ACT--ACGAN-AGACCT--AA--CC--AAGAACTTGGCGGCATT-CACACCCAAT-AGGGGAGCCTGTCCTAGAA-CTGATACCC-ACAACTAACCCT-ACTTGCCCTCGCC---CCC------AGCCTGTATACCGCC-GTCGACAGCCCACCTAC-AAAA-G-A-AAT-A-GTATGCTCCAAGGG--AAA-CCCCCCTCA------CGTCAGGTCAAGGTGCAGCCAATGAG-CAAGAAGAGA-TGGGCTAC-AATAACAAAC---AAATCC-CAACCTCCGA-------ATGAAAAAAGAA---------------GACTTGAAA-GTAATAGGG-----CC-AAGTG-CCC-TATGA-T--CGC--ATNNNNNNNNN
		Liothyrella_neozelanica_290             NNNNNNNNNNNNNNNNN-NNGCAACTCCAA---TANNNCTAGG--ACT--ACGAN-AGACCTTTAAA-CCCAAAGAACTTGGCGGCATT-CACACCCAATCAGGGGAGCCTGTCCTAGAA-CTGATACCC-ACAACTAACCCT-ACTTGCCCTCGCC---CCC------AGCCTGTATACCGCC-GTCGACAGCCCACCTAC-AAAA-G-A-AAT-A-GTATGCTCCAAGGG--AAA-CCCCCCTCA------CGTCAGGTCAAGGTGCAGCCAATGAG-CAAGAAGAGA-TGGGCTAC-AATAACAAAC---AAATCC-CAACCTCCGA-------ATGAAAAAAGAG---CA----AAGAAGGACTTGAAA-GTAATAGGG-----CC-AAGTG-CCC-TATGAA-C-CGGC-ATAANNNNNNN
		Liothyrella_uva_1024                    NNNNACTATTCTTGATC-GT--AACTTCAA---TACTTCTAGGGGACT--ACGAA-AGACCTTTAAAACCCAAAGAACTTGGCGGCATTTCACACCCAATCAGGGGAGCCTGTCCTAGAA-CTGATACCCCACAACTAACCTC-ACTTGCCCTCGCT----CTC-----AGCCTGTATACCGCC-GTCGACAGCCCACCTAC-AAAA-G-A-AAT-A-GTATGCCCCAAGGG-TAAAACCCC--GCA------CGTCAGGTCAAGGTGCAGCCAATGAG-CAAGAAGAGA-TGGGCTAC-AGTAACAAAC---AAAACC-AACCCTCCCAA------TTGAAG---------CGAAAAGAAAAGGACTTGAAA-GTAACAGGGG---CCC-AAGTA-CCCCTGTGAATC-CGGCAATAAAATGTGC
		Liothyrella_uva_1072                    CCCCACTATTCT-GGCC-CTAAAACTTAAA---CACTTCT-GGG-ACT--ACGAA-AGACCTTTAAA-CCCAAAGAACTTGGCGGCATTTCATACCCAATCAGGGGAGCCTGTCCTAGAA-CTGATACCCCACAACTAACCTC-ACTTGCCCTCGCT----CTC-----AGCCTGTATACCGCC-GTCGATAGCCCACCTAC-AAAA-G-A-AAT-A-GTATGCCCCAAGGG-TAAAACCCC--GCA------CGTCAGGTCAAGGTGCAGCCAATGAG-CAAGAAGAGA-TGGGCTACCAGTAACATGG---NAAACC-AAACCTGCCAA------GTGAAAAAAGAG---CGA---AAGAAGGACTTGTAAAGTAACAGGGG---CCC-AAGTA-CCCCTGTGAATC-CGGCAATAAAATGTGC
		Liothyrella_uva_930                     NNNNACTATTCT-TGAC-GC--AACTTCAA---TACTTCTAGGG-ACT--ACGAA-AGACCTTTAAAACCCAAAGAACTTGGCGGCATTTCACACCCAATCAGGGGAGCCTGTCCTAGAA-CTGATACCCCACAACTAACCTC-ACTTGCCCTCGCT----CTC-----AGCCTGTATACCGCC-GTCGACAGCCCACCTAC-AAAA-G-A-AAT-A-GTATGCCC-AAGGG-TAAAACCCC--GCA------CGTCAGGTCAAGGTGCAGCCAATGAG-CAAGAAGAGA-TGGGCTAC-AGTAACAAAC---AAAACC-AACCCTCCCA-------ATGAAAAAAGAA---CGA---AAGAAGGACTTGAAA-GTAACAGGGG---CCC-AAGTA-CCCCTGTGAATC-CGGCAATAAAATGTGC
		Gryphus_vitreus_521                     CCCCACTATTCT-AGCC-CTAAAACTTAAC---CACTTCTAGGGCACTCTACGAA-AAACCTTTAAAACCCAAAGAACTTGGCGGCATTTCACACCCAATCAGGGGAGCCTGTCCTAGAA-CTGATACCCCACAACTAACCCC-ACTTGCGCTTGCC---CCCC-----AGCTTGTATACCGCC-GTCGACAGCCCACCTAC-TAAA-G-A-AAC-A-GTATGCTCCAAGGA--AAAATCCC-TATA------CGTCAGGTCAAGGTGCAGCCAATGCG-CAAGAAGAGA-TGGGCTAC-AATAACCAAC---AAACTC-GAACCTCCCA-------ATGAAAAAAGAG---CA----AAGAAGGACTTGAAA-GTAACAACAACAACCCAAAGTA-CTCCTGTGAATG-GGGCAATAAAATGTGC
		Gryphus_vitreus_525                     CCCCACTATTCT-AGGT-GC--AACCCCCTA--TACTTCTAGGGAACT--ACGAA-AAACCTTTAAAACCCAAAGAACTTGGCGGCATTTCACACCCAATCAGGGGAGCCTGTCCTAGAA-CTGATACCCCACAACTAACCCC-ACTTGCGCTTGCC---CCCC-----AGCTTGTATACCGCC-GTCGACAGCCCACCTAC-TAAA-G-A-AAC-A-GTATGCTCCAAGGA--AAA-CCCCCTATA------CGTCAGGTCAAGGTGCAGCCAATGCG-CAAGAAGAGA-TGGGCTAC-AATAACCAAC---AAACTC-GAACCTCCCA-------ATGAAAAAAGAG---CA----AAGAAGGACTTGAAA-GTAACAACAA---CCCAAAGTA-CTCCTGTGAATG-GGGCAATAAAATGTGC
		Dyscolia_sp.                            CCCCACTATTCT-TGGC-GC--AACCTCAA---TACTTCTAGGGTACT--ACTAA-AGACCTTTAAAACCCAAAGAACTTGGCGGCATTTCACACCCAATCAGGGGAGCCTGTCCTAGAA-CTGATACCCCACAACTAACCCC-ACTTGCCCTCGCC----TTC-----AGTCTGTATACCGCC-GTCGACAGCCCACCTAC-AAAA-G-A-AAT-A-GTATGCTCCAAGGG-TAAA-CCCCC-GCA------CGTCAGGTCAAGGTGCAGCCAATGAG-CAAGAAGAGA-TGGGCTAC-AGTAATAAAC---AAAACC-TAACCTCTCA-------ATGAAAAAAGAG---CAA---AAGAAGGACTTGAAA-GTAACGGAGG---CCT-AAGCA-CCTAAGTGAATTCCGGCAATAAAATGTGC
		Abyssothyris_sp.                        CCCCACTATTCT-AGAT-AC--AACCCCCCCNGTACTTCTAGGGAACT--ACGAA-AAACCTTTAAAACCCAAAGAACTTGGCGGCATTTCACACCCAATCAGGGGAGCCTGTCCTAGAA-CTGATACCCCACAACTAACCCT-ACTTGCGCTTGTT---TCCC-----AGCTTGTATACCGCC-GTCGACAGCCCACCTAC-TAAA-G-A-AAT-A-GTATGCCCCAAGGA--AAAATCCCC-ATA------CGTCAGGTCAAGGTGCAGCCAATGCG-CAAGAAGAGA-TGGGCTAC-AATAACCACC---AAAATC-AAACCTCCCA-------ATGAAAAAAGAG---CA----AAGAAGGACTTGAAA-GTAACAACAA---CCCAAAGTA-TCCCTGTGAATG-AGGCAATAAAATGTGC
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 426 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 EXSET missing = 1 - 77 ; 
 EXSET 12S_ingroup = 31 - 33 158 - 169 244 - 253 ; 
 EXSET 12S_alltaxax = 31 - 33 150 - 169 232 - 253 306 - 320 327 - 334 344 - 352 355 - 358 383 - 401 ; 
 
 END;