#NEXUS [written Mon Feb 23 17:03:12 SGT 2015 by Mesquite version 2.75 (build 566) at yale130132027231.central.yale.edu/192.168.1.3 (William Piel)] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=40; TAXLABELS Lophophacidium_dooksii_KF889676 Canavirgella_banfieldii_KF889653 Lophophacidium_dooksii_KF889670 Lophophacidium_dooksii_KF889682 Canavirgella_banfieldii_KF889651 Lophophacidium_dooksii_KF889673 Lophophacidium_dooksii_KF88965 Lophophacidium_dooksii_KF889654 Lophophacidium_dooksii_KF889652 Lophophacidium_dooksii_KF8896710 Lophodermella_arcuata_AY465518 Lophodermium_piceae_AY971733 Lophodermium_piceae_AY971734 Therrya_pini_JF793677 Tryblidiopsis_pinastri_JF793678 Lophodermium_gamundiae_EF191239 Lophodermium_australe_FJ861971 Coccomyces_mucronatus_GU138732 Lirula_macrospora_HQ902159 Hypoderma_minterii_JX232416 Hypoderma_rubi_GU138737 Rhytisma_salicinum_AY465515 Coccomyces_australis_EF191241 Therrya_fuckelii_JF793672 Colpoma_quercinum_U92306 Rhytisma_acerinum_GQ253100 Lophodermium_cathaya_HQ992810 Lophodermium_juniperinum_JQ313997 Meloderma_desmazieresii_AF426056 'Lophodermium pini-mugonis JF332165 ' Lophodermium_autumnale_HQ902158 Lophodermium_baculiferum_AY100655 Lophodermium_molitoris_AY100659 Dothidea_sambuci_AY930109 Lophodermium_conigenum_AY100645 Lophodermium_conigenum_FJ861975 Monilinia_fructicola_JN176564 Phyllactinia_moricola_D84385 Uncinula_necator_AF049332 Davisomycella_medusa_AY465525 ; END; BEGIN CHARACTERS; TITLE Rhytimatales; DIMENSIONS NCHAR=527; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Lophophacidium_dooksii_KF889676 TTATG-GAGCAATGG-CGGGGTGACACCCGC-CTGGTAACT------CACACCCTTTTG-TCTACC----TTCTCCGTTGCTTTGGCA---GGCCTCCGGCTCCGGCTGGGCAGCGCCTGCCAGGGGACCT--AAACTCGTGAATCA---GTGATGTCTGCGCAC--TATC---TAAT--AGTCAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCGGAGGGCATGCCTGTTCGAGCGTCATTAACAACCC--TCAAG---CTCC------G-CTT-GGTCTTGGGCTGGCCCTTTCG-------GGCCAGCCTGGAAATCAGTGGCGGC-ACGGCCCGACCCCTAAGCGGAGTAC---TTCCATCCTCGCTTCTGGG---CTTGGGCCACAGCCTGCCAGCAACCCCCCCC--------------- Canavirgella_banfieldii_KF889653 TTATT-GAGCAATGGGCGGGGTGACACCCGC-CTGGTAACT------CACACCCTTTTG-TCTACC----TTCTCCGTTGCTTTGGCA---GGCCTCCGGCTCCGGCTGGGCAGCGCCTGCCAGGGGACCT--AAACTCGTGAATCA---GTGATGTCTGCGCAC--TATC---TAAT--AGTCAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCGGAGGGCATGCCTGTTCGAGCGTCATTAACAACCC--TCAAG---CTCC------G-CTT-GGTCTTGGGCTGGCCCTTTCG-------GGCCAGCCTGGAAATCAGTGGCGGC-ACGGCCCGACCCCTAAGCGGAGTAC---TTCCATCCTCGCTTCTGGG---CTTGGGCCACAGCCTGCCAGCAACCCCCCCC--------------- Lophophacidium_dooksii_KF889670 TTATT-GAGCAATGG-CGGGGTGACACCCGC-CTGGTAACT------CACACCCTCTTG-TCTACC----TTCTCCGTTGCTTTGGCA---GGCCTCCGGCTCCGGCTGGGCAGCGCCTGCCAGGGGACCT--AAACTCGTGAATCA---GTGATGTCTGCGCAC--TATC---TAAT--AGTCAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCGGAGGGCATGCCTGTTCGAGCGTCATTAACAACCC--TCAAG---CTCC------G-CTT-GGTCTTGGGCTGGCCCTTCCG-------GGCCAGCCTGGAAATCAGTGGCGGC-ACGGCCCGACCCCTAAGCGGAGTAC---TTCCATCCTCGCTTCTGGG---CTTGGGCCACAGCCTGCCAGCAACCCCCCCC--------------- Lophophacidium_dooksii_KF889682 TTATT-GAGCAATGG-CGGGGTGACACCCGC-CTGGTAACT------CACACCCTCTTG-TCTACC----TTCTCCGTTGCTTTGGCA---GGCCTCCGGCTCCGGCTGGGCAGCGCCTGCCAGGGGACCT--AAACTCGTGAATCA---GTGATGTCTGCGCAC--TATC---TAAT--AGTCAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCGGAGGGCATGCCTGTTCGAGCGTCATTAACAACCC--TCAAG---CTCC------G-CTT-GGTCTTGGGCTGGCCCTTTCG-------GGCCAGCCTGGAAATCAGTGGCGGC-ACGGCCCGACCCCTAAGCGGAGTAC---TTCCATCCTCGCTTCTGGG---CTTGGGCCACAGCCTGCCAGCAACCCCCCCC--------------- Canavirgella_banfieldii_KF889651 TTATT-GAGCAATGG-CGGGGTGACACCCGC-CTGGTAACT------CACACCCTTTTG-TCTACC----TTCTCCGTTGCTTTGGCA---GGCCTCCGGCTCCGGCTGGGCAGCGCCTGCCAGGGGACCT--AAACTCGTGAATCA---GTGATGTCTGCGCAC--TATC---TAAT--AGTCAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCGGAGGGCATGCCTGTTCGAGCGTCATTAACAACCC--TCAAG---CTCC------G-CTT-GGTCTTGGGCTGGCCCTTCCG-------GGCCAGCCTGGAAATCAGTGGCGGC-ACGGCCCGACCCCTAAGCGGAGTAC---TTCCATCCTCGCTTCTGGG---CTTGGGCCACAGCCTGCCAGCAACCCCCCCC--------------- Lophophacidium_dooksii_KF889673 TTATT-GAGCAATGGGCGGGGTGACACCCGC-CTGGTAACT------CACACCCTCTTG-TCTACC----TTCTCCGTTGCTTTGGCA---GGCCTCCGGCTCCGGCTGGGCAGCGCCTGCCAGGGGACCT--AAACTCGTGAATCA---GTGATGTCTGCGCAC--TATC---TAAT--AGTCAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCGGAGGGCATGCCTGTTCGAGCGTCATTAACAACCC--TCAAG---CTCC------G-CTT-GGTCTTGGGCTGGCCCTTCCG-------GGCCAGCCTGGAAATCAGTGGCGGC-ACGGCCCGACCCCTAAGCGGAGTAC---TTCCATCCTCGCTTCTGGG---CTTGGGCCACAGCCTGCCAGCAACCCCCCCC--------------- Lophophacidium_dooksii_KF88965 TTATT-GAGCAATGGGCGGGGTGACACCCGC-CTGGTAACT------CACACCCTTTTG-TCTACC----TTCTCCGTTGCTTTGGCA---GGCCTCCGGCTCCGGCTGGGCAGCGCCTGCCAGGGGACCT--AAACTCGTGAATCA---GTGATGTCTGCGCAC--TATC---TAAT--AGTCAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCGGAGGGCATGCCTGTTCGAGCGTCATTAACAACCC--TCAAG---CTCC------G-CTT-GGTCTTGGGCTGGCCCTTTCG-------GGCCAGCCTGGAAATCAGTGGCGGC-ACGGCCCGACCCCTAAGCGGAGTAC---TTCCATCCTCGCTTCTGGG---CTTGGGCCACAGCCTGCCAGCAACCCCCCCC--------------- Lophophacidium_dooksii_KF889654 TTATT-GAGCAATGGGCGGGGTGACACCCGC-CTGGTAACT------CACACCCTTTTG-TCTACC----TTCTCCGTTGCTTTGGCA---GGCCTCCGGCTCCGGCTGGGCAGCGCCTGCCAGGGGACCT--AAACTCGTGAATCA---GTGATGTCTGCGCAC--TATC---TAAT--AGTCAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCGGAGGGCATGCCTGTTCGAGCGTCATTAACAACCC--TCAAG---CTCC------G-CTT-GGTCTTGGGCTGGCCCTTCCG-------GGCCCGCCTGGAAATCAGTGGCGGC-ACGGCCCGACCCCTAAGCGGAGTAC---TTCCATCCTCGCTTCTGGG---CTTGGGCCACAGCCTGCCAGCAACCCCCCCC--------------- Lophophacidium_dooksii_KF889652 TTATT-GAGCAATGGGCGGGGTGACACCCGC-CTGGTAACT------CACACCCTTTTG-TCTACC----TTCTCCGTTGCTTTGGCA---GGCCTCCGGCTCCGGCTGGGCAGCGCCTGCCAGGGGACCT--AAACTCGTGAATCA---GTGATGTCTGCGCAC--TATC---TAAT--AGTCAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCGGAGGGCATGCCTGTTCGAGCGTCATTAACAACCC--TCAAG---CTCC------G-CTT-GGTCTTGGGCTGGCCCTTCCG-------GGCCAGCCTGGAAATCAGTGGCGGC-ACGGCCCGACCCCTAAGCGGAGTAC---TTCCATCCTCGCTTCTGGG---CTTGGGCCACAGCCTGCCAGCAACCCCCCCC--------------- Lophophacidium_dooksii_KF8896710 TTATT-GAGCAATGG-CGGGGTGACACCCGC-CTGGTAACT------CACACCCTTTTG-TCTACC----TTCTCCGTTGCTTTGGCA---GGCCTCCGGCTCCGGCTGGGCAGCGCCTGCCAGGGGACCT--AAACTCGTGAATCA---GTGATGTCTGCGCAC--TATC---TAAT--AGTCAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCGGAGGGCATGCCTGTTCGAGCGTCATTAACAACCC--TCAAG---CTCC------G-CTT-GGTCTTGGGCTGGCCCGGAAG-------GGCCAGCCTGGAAATCAGTGGCGGC-ACGGCCCGACCCCTAAGCGGAGTAC---TTCCATCCTCGCTTCTGGG---CTTGGGCCACAGCCTGCCAGCAACCCCCCCC--------------- Lophodermella_arcuata_AY465518 TTATT-GAGCA-TGG-CGGGGTCAAACCCGC-CTGGTAACT------CACACC-TCTTG-TCTACC----CTCTCTGTTGCTTTGGCA---GGCCTCCGGCTCCGGCTGG-CAGCGCCTGCCAGGGGACCT--AAACTCGTGAATCA---GTGATGTCTGAGCAC--TATC---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCGGAGGGCATGCCTGTTCGAGCGTCATTA-CA?CCC--TCAAG---CTCT------G-CTT-GGTCTTGGGCTGGCCCGGAAG-------GGCCAGCCTGGAAATCAGTGGCGGC-ACTGCCTGCCCCCTAAGCGTA?TAC---TTCCACTCTCGCTTCTGGG---CGTGGGCACCAGCCTGCCAGCGAACCCCCCC--------------- Lophodermium_piceae_AY971733 ------------CATTAAAGAATACAA--GG-CTCTCGAGCCCTATTCTCA-CCCTTTG-TTTATT----AACTTTGTTGCTTTGGCA---GGCCTCCGGCTTCGGCTGGGTCGCGTCTGTCAGAGGCCTA----ACTCTTGAATCT---CTGCTGTCTGAGTAC--TATC---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CTCT------G-CTT-GGTGTTGGGCTCGCCCTG-------TAGGGCCTGCCTCAAAGTCAGTGGCGGC-ACCGTCTGACC-CTAAGCGTAGTAC---TAC--TCGCCGCTTCTGGAA---TCGGTCGGCTGCCTGCCAGCCTAACCCCC---------------- Lophodermium_piceae_AY971734 ------------CATTAAAGAATACAA--GG-CTCTCGAGCCCTATTCTCA-CCCTTTG-TTTATT----AACTTTGTTGCTTTGGCA---GGCCTCCGGCTTCGGCTGGGTCGCGTCTGTCAGAGGCCTA----ACTCTTGAATCT---CTGCTGTCTGAGTAC--TATC---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CTCT------G-CTT-GGTGTTGGGCTCGCCCTG-------TAGGGCCTGCCTCAAAGTCAGTGGCGGC-ACCGTCTGACC-CTAAGCGTAGTAC---TAC--TCGCCGCTTCTGGAA---TCGGTCGGCTGCCTGCCAGCCTAACCCCC---------------- Therrya_pini_JF793677 ------------CATTAAAGAATATCG--GC-CTCACGGCC-CTGTTCTCA-CCCAATG-TATACCC--AACTCTTGTTGCTTTGGCA---GGCCCCTGGCTCCGGCTGGATCGCGCCTGCCAGAGGACGT--AAACTCTGGAATCT---TTGCCGTCTGAGTAC--TATA---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCACG---CCCA------G-CGT-GGTATTGGGCTCCGCCTT------CGA-GGCGGGCCTCAAAGTCAGTGGCGGC-ACTGCCGGACCC-TAAGCGTAGTAC---TAC--TCGTCGCTTGTTGGG-CTTCCGGCAGCAGCCTGCCAGC-AACCCCCATT-------------- Tryblidiopsis_pinastri_JF793678 -----------TCATTAAAGAATATCG--GC-CTCACGGCC-CTGTTCTCA-CCCAATG-TATACCC--AACTCTTGTTGCTTTGGCA---GGCCCCTGGCTCCGGCTGGATCGCGCCTGCCAGAGGACGT--AAACTCTGGAATCT---TTGCCGTCTGAGTAC--TATA---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCACG---CCCA------G-CGT-GGTATTGGGCTCCGCCTT------CGA-GGCGGGCCTCAAAGTCAGTGGCGGC-ACTGCCGGACCC-TAAGCGTAGTAC---TAC--TCGTCGCTTGTTGGG-CTTCCGGCAGCAGCCTGCCAGC-AACCCCCATT-------------- Lophodermium_gamundiae_EF191239 -----------TCATTACAGAATCGGT-GAC--CTCGCGGTCCCATTCTCA-CCCTTTG-TATACCA--AACCTCCGTTGCTTTGGC----------TGGCCCTCGC------GGGCCCGCCAGAGGAGTC--AAACCCGTGAATTT---TTGCTGTCTGAGTAC--TATA---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CTCG------G-CTT-GGTATTGGGCTGGCCCCT------TGTGGGCCTGCCTGGAAATCAGTGGCGGC-TCCGTCCGGTC-TCAAGCGCAGTAA---CAC--TCGTCGCTTGTTAGG--CTTGGTCGGCAGCCTGCCAACAACCCCCACT--------------- Lophodermium_australe_FJ861971 -----------TCATTAAAGAATACAGGCTT-CACGGCCGCTATATTCTCA-CCCTTTG-TTAACT---ACACTTTGTTGCCTTGGC------------GCCTAGC-------------GCCAGTGGACCA--AAACTCTTGAATCA---TTGCTGTCTGAGTAC--TATA---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CTCT------G-CTT-GGTATTGGGCTCGCCCCG-------TAGGGCCTGCCTCAAAATCAGTGGCGGCCACTGTCCGACCCTTCAGCGCAGTAC---TAC--TCGCCGCTCGTAGG--AGGATGGGAAG--CCGTTAT-ACAACCCCCACC-------------- Coccomyces_mucronatus_GU138732 -----------TCATTAAAGAATAACG--GC-CTCGCGGCT-ATATTCTCA-CCCTTTG-TATACCA--ACCT-TTGTTGCTTTGGCG---GGCCCCCGGCTCCGGCTGGACCGCGCCCGCCAGAGGACCT--AAACTCTTGAATCT---CCGCTGTCTGAGTAC--TATG---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTTTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCACGTCCCCCA------G-CGT-GGTGTTGGGCTCGCCCCG------TAG-GGCCTGCCTCAAAGTCAGTGGCGGC-ACCGTCGGTCCCCTAAGCGTAGTAA---TAC--TCGTCGCTT-CTGGG-CCTCCGGCGGAGGCTGGCCAGC-AACCCCCACT-------------- Lirula_macrospora_HQ902159 TCATTAGAGAAAAAAGGGGGGTGGACGCCGC-CCCCATTCT------CACACC-CTGTG-TCTACT----TACCCTGTTGCTTTGGCG---G--CGCCGGCTCCGGCCGGGCAA-GTCCGTCAAGGGCCC----AACTCCTGCATCT---CTGTGGTCTGAGTAC--TATC---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CGCA------G-CTT-GGTGTTGGGCTCGCCCTGTAG-------GGCCTGCCTCAAAGTCAGTGGCGGC-GCCGTCCGATCCC-AAGCGTAGTAC---TAC--TCGCCGCTGG-GGGC--ATCGGGCGATGGCCTGCCAGCAACCCCCACC--------------- Hypoderma_minterii_JX232416 --------------CTTTTTAAGCAGTGGAC----TCGTGCTCGTTCTAGG-ACCTTTG-CATACCA--AACTTGTGTTGCTTTGGC----------CGGCCTCCG--------GGCCGGCCGGAGGTGTT--CAACCCTTGAATTA---GTGATGTCTGAGTAT--TATTG--TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CCTG------G-CTT-GGTGTTGGGCTCGCCCTG------TCAGGGTCTGCCTCGAAATCAGTGGCGGC-CCCGTCCGATC-TCAAGCGTAGTAA---TGC--TATCCGCTTGTT-GG--TCTGGATGGAAGCTTGCCAGCAACCCCCAAC--------------- Hypoderma_rubi_GU138737 -----------TCATTAAAGAATACAG--GC-TTCACGGCCGCTATTCTCA-CCCTTTG-TATACAA--AAAC-TTGTTGCTTTGGCA---GGCCTCCGGCGCACGCTGGGCTGCGCCTGCCAGAGGATCT--AAACCCTAGAATCA---TTGCTGTCTGAGTAC--TACT---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTTTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCTCCTGGTATTCCGGGAGGCATGCCTGTTTGAGCGTCATTA-CAACCC--TCACG---CTTC------G-CGT-GGTGTTGGGCTCGCCCGC------TTG-GGCCTGCCTCAAAATCAGTGGCGGC-GACATCGAACCCCTAAGCGTAGTAA---TAC--TCGCAGCTT-CTGGG-AGCC-GGTGGTAGCTTGCTAGCAACCCCCCAA--------------- Rhytisma_salicinum_AY465515 ------------CATTAAAGAATTGGT-GAT-GCTCTGCGTCCCATTCTCA-CCCTATG-TTTATTA--AACCTCAGTTGCTTTGGC----------CGTCATACA--------G-CCGGCCAAAGGACCCT-GAACTCTTGAATTA---TTGCTGTCTGAGTATA-TATAA--CAAT--CGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CAAC------G-CTT-GATGTTAGGCCTGCCTTG------ATTGG-CGCGCCCTAAAAGAAGTGGCGGC-TCCGTCCAGTC-TCAAGCGTAGTAA---TAC--TCGCCACTTGTTAGG--CTTGGGCGAGAGCTTGCCAGAGAACCCCCAA--------------- Coccomyces_australis_EF191241 -----------TCATTAAAGAATCGGT-GAC-CCTTGCGGTCCCATTCTCA-CCCTTTG-TATACCA--AACTT-AGTTGCTTTGGC----------TGGCCTTGC--------GGCCGGCCAGAGGACAC--AAACCCTTGAATCT---TTGCTGTCTGAGTAC--TATA---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CTCA------G-CTT-GGTATTGGGCTCGCCCTT------CATGGGCCTGCCTCAAAATCAGTGGCGGC-TCCGTCCAGTC-TCAAGCGCAGTAA---TAC--TCGTCGCTTGTTAGG--CTTGGTCGGTGGCCTGCTAACAACCCCCACT--------------- Therrya_fuckelii_JF793672 ------------CATTAATGAATATCG--GC-CTCGCGGCC-CTATTCTCA-CCCTGTG-TCTACCT--AACT-TTGTTGCTTTGGCA---GGCCCCTGGCTTCGGCTGGACTGCGCCTGCCAGAGGATGT--AAACTCTGGAATCT---CTGCTGTCTGAGTAC--TATA---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTAACAACCC--TCACG---CCCT------G-CGT-G-TGTTGGGCTCCGCCTG------CAAAGGCCGGCCTCAAAGTCAGTGGCGGC-ACTGCTGGACCC-TAAGCGTAGTAC---TAC--TCGTCGCTTCTTGGG-CTTCCAGCAGCGGCTTGCCAGCCAACCCCCACC-------------- Colpoma_quercinum_U92306 ------------CATTAAAGAATACAG--GC-TTCGCGGCCGCTATYCTCC-TTCTTTG-TATACCA--AACT-TTGTTGCTTTGGCA---GGCCCCTGGCTTCGGCTGGATAGCGCCTGCCAGAGGACCA--AAACCCTTGAATCT---TTGCCGTCTGAGTAT--TATA---CAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCTCCCTGGTATTCCGGGGAGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCACG---CCCA------G-CGT-GGTATTGGGCTCGCCCTG------TAG-GGCTTGCCTCAAAGTCAGTGGCGGC-ACCGTCTGACCC-TAAGCGTAGTAA---TAC--TTGT-GCTT-TTGGG-CTTG-GGCGGGCGCTCGCTAGC-AACCCCCACC-------------- Rhytisma_acerinum_GQ253100 CTGCGGAAGGATCATTACCGAGTTGGCCGAC-GCCCCGCGTCCCGATTCCA-CCCTTGA-TGTACCG--AACCACTGTTGCTTTGGC----------CGGCCCCCG--------GGCCGGCCAGAGGCCCCC-AAACCCCGGAATCC---GTGCCGTCTGAGTAC--CACG---CAAT--CGCGAAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGCTTTCCAGGGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CCCC------GGCTT-GGTCTTGGGCCCGCCATC------CATGG-CCCGCCTCAAACGCAGTGGCGGC-CCCGTCCAGTC-TCAAGCGTAGTAC---TAC--TCGTCGCTTGTCGGG--CTCGGGCGGCGGCCGGCCAGCAAGCCCCTCA--------------- Lophodermium_cathaya_HQ992810 ---------------GGGCAAAGAGCTGGGA-CTTCGGGCC-CTATTCTCA-CCCTTTG-TCTACC---ACGCTTTGTTGCCTTGGC------------GCTTCGGC------------GCCAGCGGAACG--AAACCCTGGAATCA---TTGCTGTCTGAGTAC--TATA---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CTCT------G-CTT-GGTGTTGGGCTCGCCCTG-------TAGGGCCTGCCTCAAAATCAGTGGCGGCCACCGTCCGACC-TTCAGCGCAGTAC---TAC--TCGTCGCTGTGAGGGAGGGCCGAAG----CCGTCATGACAACCCCCATT-------------- Lophodermium_juniperinum_JQ313997 CTGCGGAAGGATCATTAAAGAATAACA-CGC-CTCCGGGCG-CTATTCTCA-CCCTTTG-CTTACC---ATACTTTGTTGCCTTGGC------------GCACAGCC------------GCCAGTGGATCA--AAACCCGTGAATCA---TTGCTGTCTGAGTAC--TACA---CAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGGGGGCATGCTTGTTCGAGCGTCATTA-CAACCC--TCAAG---CTCC------G-CTT-GGTGTTGGGCTCGCCTT---CCTCCGAAGGCCTGCCTCAAAATCAGTGGCGGCCGCCGTCCGACC-TTCAGCGCAGTAA---TGC--TCGTCGCTGCAAGGGAAGGGTGGCAAGCGCCGTCAT-ACAACCCCCACA-------------- Meloderma_desmazieresii_AF426056 ------------------------------------------------------------TTTACC---ACACGTAGTTGCCTTGGC------------GCACCGC-------------GCCAGTGGATCG--AAACTCCTGAATCA---TTGCCGTGTGAGTAC--TATA---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTCCCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CTCT------G-CTT-GGTGTTGAGCCCGCCCCG-CTTACCCGGGGCTCGCTTCAAAATCAGTGGCGGCCGCCGTCCGACC-TTCAGCGCAGTAA---TGC--TCGTCGCTGGTAGGGAAGGGCAGCAAGGGCCGTCAT-CCAACCCCCACA-------------- 'Lophodermium pini-mugonis JF332165 ' ----TGCTTCGGCAGCTCTGCCGTGCGGCAG-TCGGTGGCCCCGTTAAGGGAGGCAATG-TTAACC-------ATCCTCCCCCACGGG---TCATTA-ACCGCCCGCCGG---TTATCTGTCAGAGGACCCT-AAACTCTTGAATCT---TTGAAGTCTGAGTAC--TATA---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCTCCCTGGCATTCCGGGGAGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CTCT------G-CTT-GGTGTTGGGCTCGCCCTC-------TAGGGCCTGCCTCAAAGTCAGTGGCGGC-GCCGTCTGACC-CTAAGCGTAGTAA---TAC--TTCTCGCTTTTGGG---CTTGGACGGTT----------------------------------- Lophodermium_autumnale_HQ902158 ----TGCTTCGGCAGCGCTGGACCGTGGCTG-TGAGTATTGTCGAAAGGAGTAACTCCG-CCAGCCTGCGAGGGCTGTTAAGCGCGCA---TCCCAATATTCCCCTGCGG---CCAACTGTCGGGGACCTCC-AACTCTTTGAATTT---TTGCAGTCTGAGTAC--TATA---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCACTCCCTGGCATTCCGGGGAGTATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CTCT------G-CTT-GGTATTGGGCTGGCCCCG-------TAGGGCCTGCCTCAAAGTCAGTGGCGGC-ACCGTCTGACC-TTAAGCGTAGTAA---TAC--ACGTCGCTTTTGGG---CTCCGGCGGTGGCTTGCCAGCAGCCCCCACA--------------- Lophodermium_baculiferum_AY100655 -----------------AAGAATA-CACGGC-CTCACGGCCC-TATTCTCACCCTT-TG-TATACT---TAACTTTGTTGCTTTGGC------------G--GAAAC------------GTCAGAGGACCG--AAACCCTTGAATCT---CTGCTGTCTGAGTAC--TATA---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CTCT------G-CTT-GGTATTGGGCTCGCCTCC---------GGGCTTGCCTCAAAGTCAGTGGCGGC-ACCGTCTGACC-TTAAGCGCAGTAA---TAC--TCGCCGCTTGTAGAATCAGGAGGATAG--CTTGCTA-AGAACCCCCATC-------------- Lophodermium_molitoris_AY100659 -----------------AAGAATAACAGGGT-CTTCGGGCCCCTATTCACACCCTTATG-TCTACC---TAACTTTGTTGCTTTGGC------------G--GAAAC------------GTCAGAGGACCT--AAACTCTAGAATCT---CTGCTGTCTGAGTAC--TATA---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CTCT------G-CTT-GGTATTGGGTTCGCCTCC---------GGGCTTACCTCAAAATCAGTGGCGGC-CTCGGCTGACA-TCAAGCGTAGTAA---TAC--TCGTCGCTTGGAGAATCAGTCGTAAAG--CCTGCTA-GCAACCCCCACA-------------- Dothidea_sambuci_AY930109 ---AACCCGGACAATCCCCTTATACTTCCCA-CCCTTTGTTGTTATAACTACCTTGTTGCTTTGGCGGGACCGTTCGGTCATCCGAGC---GCACCAGTCTTCGGACAGGTGAGCGCCTGCCAGAGTCCAACCAAACTCTTGTTTTTAACCAGTCGTCTGAGTATAAAATTT--TAATTAAATTAAAA-CTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTA-CACCAC--TCAAG---CACC------G-CTT-GGTATTGGGCATCGTCCGCCGAAAGGCGGGCGTGCCTCGAAGACCTCGGCGGGGTTTCTCCAACT-TCGGGCGTAGTAGAGTTAAATCGAACGTCTTATAAGCTTGGTGGGACTCCATTGCCGTTAAACCTTTTAT-------------- Lophodermium_conigenum_AY100645 -----------------CAGAAGGATATCGC-CCTCGGGCTTCTCTTCTCA-CCCTTTG-TTTACC---ACACGTAGTTGCCTTGGC------------GCTCCGC-------------GCCAGTGGATCG--AAACTCCTGAATCA---TTGCCGTCTGAGTAC--TATT---CAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCCGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CTCT------G-CTT-GGTGTTGAGCCCGCCCCGGCCTGCCCGGGGCTCGCTTCAAAGTCAGTGGCGGCCGCCGTCCGACC-TTCAGCGCAGTAA---TGC--TCGCCGCTGTTAGGGAAGGGCAGCAAGGGCCGTCAT-ACAACCCCCACA-------------- Lophodermium_conigenum_FJ861975 CTGCGGAAGGATCATTACAGAAGGATATCGC-CCTCGGGCTTCTCTTCTCAACCCTTTG-TTTACC---ACACGTAGTTGCCTTGGC------------GCTCCGC-------------GCCAGTGGATCG--AAACTCCTGAATCA---TTGCCGTCTGAGTAC--TATT---CAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CTCT------G-CTT-GGTGTTGAGCCCGCCCCGGCCTGCCCGGGGCTCGCTTCAAAGTCAGTGGCGGCCGCCGTCCGACC-TTCAGCGCAGTAA---TGC--TCGCCGCTGTTAGGGAAGGGTAGCAAGGGCCGTCAT-ACAACCCCCACA-------------- Monilinia_fructicola_JN176564 ---------------AAGGATCATTACAGAG--TTCATGCCCGAAAGGGTAGACCTCCC-ACCCTTGTGTATTATTAC-TTTGTTGCTTTGGCGAGCTGCCTTCGGGCCTTGTATGCTCGCCAGAGGA--TAATTAAACTCTTTTTATTAATGTCGTCTGAGT-----ACTATATAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTT-CAACCC--TCAAGCAC----------AGCTT-GGTATTGAGTCTATGTCAGTAAT-----GGCAGGCTCTAAAATCAGTGGCGGCGCCGCTG--GGTCCTGAACGTAGTAA---TAT--CTCTCGTTACAGGT---TCTCAGTGTGCTTCTGCCAAAACCCAAATTTTCTAT---------- Phyllactinia_moricola_D84385 ---CGACCCTCCCACCCGTGTCGATAAAAACGTCTGTTGCTTTGGTAGGCCGGGGCCCG-CCTGGCGGATCCCGCTG--GCCTTTGA----------------TGGCTGGAGCGTGCCTGCCAGAGAAAGTTGGACAACTCGTGTGATTGATGAAGTCTGAGCAACCAAGTGGGAAATT-AGTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATCTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGSATGCCTGTTCGAGCGTCAAAA-CAACCCC-TCAAGTCGCTCT------GGCTT-GGTCTTGGGGCC-CGCCCGCGACAGCGTGGCGGCCCTTAAATCTAGTGGCGGTGCCGGTG-GTGCTCTCCGTGTAGTCA---CGT---TCTCGCGACAGGG---CAGCACTGG-ACCCAGCCAAAAGACAACCTGTG------------- Uncinula_necator_AF049332 ---CGACCCTCCCACCCGTGTCGATATGTAT-TTTGTTGCTTTGGCGGGCGGGTTTGCG-CCCGTTCGCGTCCGCTGTGGCCTGGGGGAGCGCCCACCGCGTTCGGCTGGAGCGTGCCCGCCAGAGACCTCATCCAAACTCACGTTGTC-ATGTAGTCTAAGC--TTTATTAAGTAATT-GAT-AAAA-CTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATAA-CACCCCCCTCAAGCTGCCCTTGTGGTGGCTTCGGTGTTGGGGCT-CGTC-GCAGTTTTGCGGTGGCCCTTAAAGACAGTGGCCCTCCCCGCGTGGGCTCTACGCGTAGTAA---CTTGTTCCTCGCGACAGAG---TGACGCTCGTGATCAGCCAGA--ACCACC----------------- Davisomycella_medusa_AY465525 ------------CATTAAGGATACAAG--GC-TCTCGGGTC-GTATTCTCA-CCCTGTG-CATATCG--AAACCTCGTTGCCCTGGC------------GCTGCGGC------------GCCAGAGGAATC--AAACCCTGGAATCT---CTGCTGTCTGAGTAC--TATG---TAAT--AGTCAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGCTGGTATCCCAGCAGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CTCT------G-CTT-GGTATTGGGCTCGCCCCC-----CCTGGGGCCTGCCTCGAAATCAGTGGCGGCAACAGTCCTGGCCTCAAGCGCAGTGA---TCT--ACGACGCTTGCTGGTGAGGGCTGCG-GCCCCAGCAA-CCCCCCCCCACCATCAAGGTTGAC-- ; END; BEGIN TREES; Title Rhytismatales_Consensus_of_3; LINK Taxa = Taxa; TRANSLATE 1 Lophophacidium_dooksii_KF889676, 2 Canavirgella_banfieldii_KF889653, 3 Lophophacidium_dooksii_KF889670, 4 Lophophacidium_dooksii_KF889682, 5 Canavirgella_banfieldii_KF889651, 6 Lophophacidium_dooksii_KF889673, 7 Lophophacidium_dooksii_KF88965, 8 Lophophacidium_dooksii_KF889654, 9 Lophophacidium_dooksii_KF889652, 10 Lophophacidium_dooksii_KF8896710, 11 Lophodermella_arcuata_AY465518, 12 Lophodermium_piceae_AY971733, 13 Lophodermium_piceae_AY971734, 14 Therrya_pini_JF793677, 15 Tryblidiopsis_pinastri_JF793678, 16 Lophodermium_gamundiae_EF191239, 17 Lophodermium_australe_FJ861971, 18 Coccomyces_mucronatus_GU138732, 19 Lirula_macrospora_HQ902159, 20 Hypoderma_minterii_JX232416, 21 Hypoderma_rubi_GU138737, 22 Rhytisma_salicinum_AY465515, 23 Coccomyces_australis_EF191241, 24 Therrya_fuckelii_JF793672, 25 Colpoma_quercinum_U92306, 26 Rhytisma_acerinum_GQ253100, 27 Lophodermium_cathaya_HQ992810, 28 Lophodermium_juniperinum_JQ313997, 29 Meloderma_desmazieresii_AF426056, 30 'Lophodermium pini-mugonis JF332165 ', 31 Lophodermium_autumnale_HQ902158, 32 Lophodermium_baculiferum_AY100655, 33 Lophodermium_molitoris_AY100659, 34 Dothidea_sambuci_AY930109, 35 Lophodermium_conigenum_AY100645, 36 Lophodermium_conigenum_FJ861975, 37 Monilinia_fructicola_JN176564, 38 Phyllactinia_moricola_D84385, 39 Uncinula_necator_AF049332, 40 Davisomycella_medusa_AY465525; TREE Consensus_tree_of_3_trees_from_Default_Trees = (1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,(21,22,23,24,25,26,27,28,29,30,(31,32,33,34,35,(36,37,(38,(39,40)[%consensusFrequency = 0.66666667 ])[%consensusFrequency = 0.66666667 ])[%consensusFrequency = 0.66666667 ])[%consensusFrequency = 0.66666667 ])[%consensusFrequency = 0.66666667 ])[%consensusFrequency = 1.0 ] [% ] [% setBetweenDouble = consensusFrequency ]; END; BEGIN TREES; Title 'Rhytimatales (Mesquite''s heuristic search)'; LINK Taxa = Taxa; TRANSLATE 1 Lophophacidium_dooksii_KF889676, 2 Canavirgella_banfieldii_KF889653, 3 Lophophacidium_dooksii_KF889670, 4 Lophophacidium_dooksii_KF889682, 5 Canavirgella_banfieldii_KF889651, 6 Lophophacidium_dooksii_KF889673, 7 Lophophacidium_dooksii_KF88965, 8 Lophophacidium_dooksii_KF889654, 9 Lophophacidium_dooksii_KF889652, 10 Lophophacidium_dooksii_KF8896710, 11 Lophodermella_arcuata_AY465518, 12 Lophodermium_piceae_AY971733, 13 Lophodermium_piceae_AY971734, 14 Therrya_pini_JF793677, 15 Tryblidiopsis_pinastri_JF793678, 16 Lophodermium_gamundiae_EF191239, 17 Lophodermium_australe_FJ861971, 18 Coccomyces_mucronatus_GU138732, 19 Lirula_macrospora_HQ902159, 20 Hypoderma_minterii_JX232416, 21 Hypoderma_rubi_GU138737, 22 Rhytisma_salicinum_AY465515, 23 Coccomyces_australis_EF191241, 24 Therrya_fuckelii_JF793672, 25 Colpoma_quercinum_U92306, 26 Rhytisma_acerinum_GQ253100, 27 Lophodermium_cathaya_HQ992810, 28 Lophodermium_juniperinum_JQ313997, 29 Meloderma_desmazieresii_AF426056, 30 'Lophodermium pini-mugonis JF332165 ', 31 Lophodermium_autumnale_HQ902158, 32 Lophodermium_baculiferum_AY100655, 33 Lophodermium_molitoris_AY100659, 34 Dothidea_sambuci_AY930109, 35 Lophodermium_conigenum_AY100645, 36 Lophodermium_conigenum_FJ861975, 37 Monilinia_fructicola_JN176564, 38 Phyllactinia_moricola_D84385, 39 Uncinula_necator_AF049332, 40 Davisomycella_medusa_AY465525; TREE Tree_1 = ((((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),(8,(9,5))),4),(6,3)); TREE Tree_2 = ((6,(((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),(8,(9,5))),4)),3); TREE Tree_3 = (6,((((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),(8,(9,5))),4),3)); TREE Tree_4 = ((4,(6,3)),((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),(8,(9,5)))); TREE Tree_5 = (4,(((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),(8,(9,5))),(6,3))); TREE Tree_6 = (4,((6,((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),(8,(9,5)))),3)); TREE Tree_7 = (4,(6,(((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),(8,(9,5))),3))); TREE Tree_8 = ((((8,(((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7)),(9,5)),4),(6,3)); TREE Tree_9 = (((8,((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),(9,5))),4),(6,3)); TREE Tree_10 = (((8,((9,(((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7)),5)),4),(6,3)); TREE Tree_11 = (((8,(9,((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),5))),4),(6,3)); TREE Tree_12 = (((8,(9,5)),((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),4)),(6,3)); TREE Tree_13 = ((((7,(8,(9,5))),((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10))),4),(6,3)); TREE Tree_14 = (((7,(((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),(8,(9,5)))),4),(6,3)); TREE Tree_15 = (((((((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10),7),(8,(9,5))),(1,2)),4),(6,3)); TREE Tree_16 = (((((((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10),7),(1,2)),(8,(9,5))),4),(6,3)); TREE Tree_17 = ((((((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10),((1,2),7)),(8,(9,5))),4),(6,3)); TREE Tree_18 = ((((((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10),7),((1,2),(8,(9,5)))),4),(6,3)); TREE Tree_19 = ((((((2,((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),(8,(9,5))),1),4),(6,3)); TREE Tree_20 = ((((((2,((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),1),(8,(9,5))),4),(6,3)); TREE Tree_21 = ((((((2,((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),1),7),(8,(9,5))),4),(6,3)); TREE Tree_22 = (((((2,(1,((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10))),7),(8,(9,5))),4),(6,3)); TREE Tree_23 = (((((2,((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),(1,7)),(8,(9,5))),4),(6,3)); TREE Tree_24 = (((((2,((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),(1,(8,(9,5)))),4),(6,3)); TREE Tree_25 = ((((((1,((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),(8,(9,5))),2),4),(6,3)); TREE Tree_26 = ((((((1,((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),2),(8,(9,5))),4),(6,3)); TREE Tree_27 = (((((1,((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),(2,7)),(8,(9,5))),4),(6,3)); TREE Tree_28 = (((((1,((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),(2,(8,(9,5)))),4),(6,3)); TREE Tree_29 = ((((((1,2),7),(8,(9,5))),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),4),(6,3)); TREE Tree_30 = (((((1,2),7),(((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10),(8,(9,5)))),4),(6,3)); TREE Tree_31 = (((((1,2),7),((8,((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),(9,5))),4),(6,3)); TREE Tree_32 = (((((1,2),7),(8,(((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10),(9,5)))),4),(6,3)); TREE Tree_33 = (((((1,2),7),(8,((9,((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),5))),4),(6,3)); TREE Tree_34 = (((((1,2),7),(8,(9,(((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10),5)))),4),(6,3)); TREE Tree_35 = ((((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((21,40),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((((14,15),24),25),18))))),(13,12)))),10)),7),(8,(9,5))),4),(6,3)); TREE Tree_36 = ((((((1,2),((11,(19,(((32,33),((((17,((29,(36,35)),28)),27),(21,40)),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((((14,15),24),25),18)))),(13,12)))),10)),7),(8,(9,5))),4),(6,3)); TREE Tree_37 = ((((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),(((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),40),(21,((((14,15),24),25),18))))),(13,12)))),10)),7),(8,(9,5))),4),(6,3)); TREE Tree_38 = ((((((1,7),2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),(8,(9,5))),4),(6,3)); TREE Tree_39 = (((((1,(7,2)),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),(8,(9,5))),4),(6,3)); TREE Tree_40 = ((((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),4),(6,3)),(8,(9,5))); TREE Tree_41 = ((((((1,2),(8,(9,5))),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),4),(6,3)); TREE Tree_42 = ((((((1,(8,(9,5))),2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),4),(6,3)); TREE Tree_43 = (((((1,((8,(9,5)),2)),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),4),(6,3)); TREE Tree_44 = (((((1,2),((8,(9,5)),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10))),7),4),(6,3)); TREE Tree_45 = (((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),4),((8,(9,5)),(6,3))); TREE Tree_46 = (((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),4),((6,(8,(9,5))),3)); TREE Tree_47 = (((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),4),(6,((8,(9,5)),3))); TREE Tree_48 = ((((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),((9,8),5)),4),(6,3)); TREE Tree_49 = ((((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),(9,(8,5))),4),(6,3)); TREE Tree_50 = (((((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),(8,5)),9),4),(6,3)); TREE Tree_51 = (((((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),9),(8,5)),4),(6,3)); TREE Tree_52 = (((((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),(8,9)),5),4),(6,3)); TREE Tree_53 = (((((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),5),(8,9)),4),(6,3)); TREE Tree_54 = ((((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),4),7),(8,(9,5))),(6,3)); TREE Tree_55 = ((((((1,2),4),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),(8,(9,5))),(6,3)); TREE Tree_56 = ((((((1,4),2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),(8,(9,5))),(6,3)); TREE Tree_57 = (((((1,(4,2)),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),(8,(9,5))),(6,3)); TREE Tree_58 = (((((1,2),(4,((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10))),7),(8,(9,5))),(6,3)); TREE Tree_59 = (((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),(4,7)),(8,(9,5))),(6,3)); TREE Tree_60 = (((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),(8,(9,5))),((6,4),3)); TREE Tree_61 = (((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),(8,(9,5))),(6,(4,3))); TREE Tree_62 = (((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),((6,3),(8,(9,5)))),4); TREE Tree_63 = (((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),((8,(6,3)),(9,5))),4); TREE Tree_64 = (((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),(8,((6,3),(9,5)))),4); TREE Tree_65 = (((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),(8,((9,(6,3)),5))),4); TREE Tree_66 = (((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),(8,(9,((6,3),5)))),4); TREE Tree_67 = (((((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),(8,(9,5))),6),4),3); TREE Tree_68 = ((((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),(8,(9,5))),(6,4)),3); TREE Tree_69 = (((((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),(8,(9,5))),3),4),6); TREE Tree_70 = ((((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),(8,(9,5))),(3,4)),6); TREE Tree_71 = ((6,4),(((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),(8,(9,5))),3)); TREE Tree_72 = ((6,(((8,(((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7)),(9,5)),4)),3); TREE Tree_73 = ((6,((8,((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),(9,5))),4)),3); TREE Tree_74 = ((6,((8,((9,(((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7)),5)),4)),3); TREE Tree_75 = ((6,((8,(9,((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),5))),4)),3); TREE Tree_76 = ((6,((8,(9,5)),((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),4))),3); TREE Tree_77 = ((6,(((7,(8,(9,5))),((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10))),4)),3); TREE Tree_78 = ((6,((7,(((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),(8,(9,5)))),4)),3); TREE Tree_79 = ((6,((((((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10),7),(8,(9,5))),(1,2)),4)),3); TREE Tree_80 = ((6,((((((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10),7),(1,2)),(8,(9,5))),4)),3); TREE Tree_81 = ((6,(((((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10),((1,2),7)),(8,(9,5))),4)),3); TREE Tree_82 = ((6,(((((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10),7),((1,2),(8,(9,5)))),4)),3); TREE Tree_83 = ((6,(((((2,((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),(8,(9,5))),1),4)),3); TREE Tree_84 = ((6,(((((2,((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),1),(8,(9,5))),4)),3); TREE Tree_85 = ((6,(((((2,((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),1),7),(8,(9,5))),4)),3); TREE Tree_86 = ((6,((((2,(1,((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10))),7),(8,(9,5))),4)),3); TREE Tree_87 = ((6,((((2,((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),(1,7)),(8,(9,5))),4)),3); TREE Tree_88 = ((6,((((2,((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),(1,(8,(9,5)))),4)),3); TREE Tree_89 = ((6,(((((1,((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),(8,(9,5))),2),4)),3); TREE Tree_90 = ((6,(((((1,((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),2),(8,(9,5))),4)),3); TREE Tree_91 = ((6,((((1,((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),(2,7)),(8,(9,5))),4)),3); TREE Tree_92 = ((6,((((1,((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),7),(2,(8,(9,5)))),4)),3); TREE Tree_93 = ((6,(((((1,2),7),(8,(9,5))),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),4)),3); TREE Tree_94 = ((6,((((1,2),7),(((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10),(8,(9,5)))),4)),3); TREE Tree_95 = ((6,((((1,2),7),((8,((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),(9,5))),4)),3); TREE Tree_96 = ((6,((((1,2),7),(8,(((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10),(9,5)))),4)),3); TREE Tree_97 = ((6,((((1,2),7),(8,((9,((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10)),5))),4)),3); TREE Tree_98 = ((6,((((1,2),7),(8,(9,(((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((21,40),((((14,15),24),25),18))))),(13,12)))),10),5)))),4)),3); TREE Tree_99 = ((6,(((((1,2),((11,(19,(((32,33),(((17,((29,(36,35)),28)),27),((21,40),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((((14,15),24),25),18))))),(13,12)))),10)),7),(8,(9,5))),4)),3); TREE Tree_100 = ((6,(((((1,2),((11,(19,(((32,33),((((17,((29,(36,35)),28)),27),(21,40)),((((30,31),((37,(39,38)),34)),(20,((16,23),(26,22)))),((((14,15),24),25),18)))),(13,12)))),10)),7),(8,(9,5))),4)),3); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 527; END; BEGIN TREES; Title Rhytimatales_NJ; LINK Taxa = Taxa; TRANSLATE 1 Lophophacidium_dooksii_KF889676, 2 Canavirgella_banfieldii_KF889653, 3 Lophophacidium_dooksii_KF889670, 4 Lophophacidium_dooksii_KF889682, 5 Canavirgella_banfieldii_KF889651, 6 Lophophacidium_dooksii_KF889673, 7 Lophophacidium_dooksii_KF88965, 8 Lophophacidium_dooksii_KF889654, 9 Lophophacidium_dooksii_KF889652, 10 Lophophacidium_dooksii_KF8896710, 11 Lophodermella_arcuata_AY465518, 12 Lophodermium_piceae_AY971733, 13 Lophodermium_piceae_AY971734, 14 Therrya_pini_JF793677, 15 Tryblidiopsis_pinastri_JF793678, 16 Lophodermium_gamundiae_EF191239, 17 Lophodermium_australe_FJ861971, 18 Coccomyces_mucronatus_GU138732, 19 Lirula_macrospora_HQ902159, 20 Hypoderma_minterii_JX232416, 21 Hypoderma_rubi_GU138737, 22 Rhytisma_salicinum_AY465515, 23 Coccomyces_australis_EF191241, 24 Therrya_fuckelii_JF793672, 25 Colpoma_quercinum_U92306, 26 Rhytisma_acerinum_GQ253100, 27 Lophodermium_cathaya_HQ992810, 28 Lophodermium_juniperinum_JQ313997, 29 Meloderma_desmazieresii_AF426056, 30 'Lophodermium pini-mugonis JF332165 ', 31 Lophodermium_autumnale_HQ902158, 32 Lophodermium_baculiferum_AY100655, 33 Lophodermium_molitoris_AY100659, 34 Dothidea_sambuci_AY930109, 35 Lophodermium_conigenum_AY100645, 36 Lophodermium_conigenum_FJ861975, 37 Monilinia_fructicola_JN176564, 38 Phyllactinia_moricola_D84385, 39 Uncinula_necator_AF049332, 40 Davisomycella_medusa_AY465525; TREE PAUP_1 = ((37:0.652732,(38:0.197491,39:0.193801):0.280727):0.2063335,(34:1.041636,((30:0.113461,31:0.232334):0.227435,((20:0.220541,((16:0.044948,23:0.02856):0.04439,(22:0.148433,26:0.186043):0.035937):0.006705):0.090118,((19:0.134583,(11:0.030732,(10:1.0E-8,((1:0.00249,(2:1.0E-8,7:1.0E-8):1.0E-8):1.0E-8,((4:1.0E-8,(3:1.0E-8,6:1.0E-8):0.002475):0.002473,(8:0.002482,(5:1.0E-8,9:1.0E-8):1.0E-8):0.002474):1.0E-8):0.010218):0.022051):0.129944):0.117824,(((12:1.0E-8,13:1.0E-8):0.081096,(32:0.041365,33:0.075965):0.08647):0.021545,((27:0.085062,(17:0.083568,(28:0.05393,(29:0.023056,(35:0.002528,36:0.002622):0.022552):0.076296):0.019863):0.015277):0.095147,(40:0.276468,(21:0.141305,(18:0.054793,(25:0.076756,(24:0.038684,(14:1.0E-8,15:1.0E-8):0.045597):0.048056):2.29222E-7):0.028402):0.030335):0.003605):0.00201):0.023302):0.001185):0.120778):0.044199):0.2063335)[% ] [% ] [% setBetweenBits = selected ]; END; BEGIN NOTES; TAXABITS TAXA = Taxa NAME = newlyAddedTaxon on = 1 - 40; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 527; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 527; END; BEGIN PAUP; set criterion = likelihood; lset nst = 2 basefreq = empirical variant = hky rates = gamma ncat = 4 shape = estimate pinvar = estimate; nj brlens; savetrees file = njtree.tre brlens; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1424682192522; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 2273833045815501427; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 5163062449717537969; mqVersion 275; checksumv 0 3 2841725228 null getNumChars 527 numChars 527 getNumTaxa 40 numTaxa 40 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 377514.0 sumSquares -1.8446744073709523E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 303; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1280 589; setLocation 0 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #5163062449717537969 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 251; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -67; setLocation 0 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;