#NEXUS [written Sat Jun 22 15:10:34 EEST 2013 by Mesquite version 2.75 (build 564) at Eugene-PC/127.0.0.1] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=14; TAXLABELS Hyphodontia_subalutacea_DQ340362 Hyphodontia_floccosa_DQ873618 Fibrodontia_alba_KC928275 Fibrodontia_alba_JQ612714 Fibrodontia_gossypina_AY646100 Fibrodontia_brevidens_KC928277 Trechispora_farinacea_EU909231 Trechispora_nivea_AY586720 Trechispora_confinis_AY586719 Subulicystidium_longisporum_AJ406422 Tubulicium_vermiferum_AY463477 Porpomyces_mucidus_AF347093 Sistotremastrum_suecicum_EU118667 Brevicellicium_olivascens_JN649327 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=594; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Hyphodontia_subalutacea_DQ340362 TAGAACTGCGAGTGAAGCGGGATGAGCTCAAATTTAAAATCTGGCGGTCTCCGGCCGTCCGAGTTGTAATCTGGAGAAGCGTTTTCCGCGTCGGACCGTGTACAATCTCTTGGAACAGAGCGTCATAGAGGGTGAGAATCCCGTCCATGACACGGACTGCCGATGCTTGTGATACGCTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTTGTCCGGGACTCAGCCTTGCTTTTGCTTGGTGTACTTCCC-GTTCGACGGGTCAACATCGATTTTGACCGGCGGATAAAGGCGGGGGGAATGTGGCACCT-TCGGGTGTGTTATAGCCCTCTGTTGCAT-GCGTCGGTTGGGATCGAGGACCGCAG---CGCGCCCTCGTGGCCGGGAGGTACGCCTCCACGTTACGCGCTTAGGATGTGGCATAAGCTAGCTTTAAGCGACC Hyphodontia_floccosa_DQ873618 TAGAACTGCGAGTGAAGCGGGATGAGCTCAAATTTAAAATCTGGCGGTCTCTGGCCGTCCGAGTTGTAATCTGGAGAAGCGTTTTCCGCGTCGGACCGTGTACAATCTCTTGGAACAGAGCGTCATAGAGGGTGAGAATCCCGTCCATGACACGGACAGCCGGTGCTTGTGATACGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCGTCCGGGACTCAGCCTTGCTCTTGCTTGGTGTACTTCCC-GTTCGACGGGTCAACATCGATTTTGGCCGGCGGATAAAGGCGGGGGGAATGTGGCACCT-TCGGGTGTGTTATAGCCCTCTGTCGCAT-GCGTCGACTGGGATCGAGGACCGCAG---CGCGCCCTCGTGGCCGGAAGGCAAGCCTTCACGTTACGCGCTTAGGATGTTG-GCATAATGGCTTTAAGCGACC Fibrodontia_alba_KC928275 TAGAACTGCGAGTGAAGCGGGAAGAGCTCAAATTTGAAATCTGGCGGCTCT--GTCGTCCGAGTTGTAACCTGGAGAAGCGTTTTCCGTGCCGGACCGTGTACAATCCCTTGGAACAGGGCGTCGTAGAGGGTGAGAATCCCGTCTTTGACACGGACTCCCGGTGCCTGTGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTAAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCTGCCGGGACTCAGCTCCGC-TCCGCGGGGTGCACTTCCCGG-CCGACGGGTCAGCATCGGTTTTGGGGGACGGACAAAGGCGGGAGGAAGGTGGCGGTT-TCGGCCGTGTTATAGCCTCCCGTTGTAC-GCGCCCTCCGGGACCGAGGAATCCGG---CGCTCGC-------------------------------CGCCTGGGATGCTG-GCGTAATGGCTTTAAGCGACC Fibrodontia_alba_JQ612714 TAGAACTGCGAGTGAAGCGGGAAGAGCTCAAATTTGAAATCTGGCGGCTCT--GTCGTCCGAGTTGTAACCTGGAGAAGCGTTTTCCGTGCCGGACCGTGTACAATCCCTTGGAACAGGGCGTCGTAGAGGGTGAGAATCCCGTCTTTGACACGGACTCCCGGTGCCTGTGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTAAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCTGCCGGGACTCAGCTCCGC-TCCGCGGGGTGCACTTCCCGG-CCGACGGGTCAGCATCGGTTTTGGGGGACGGACAAAGGCGGGAGGAAGGTGGCGGTT-TCGGCCGTGTTATAGCCTCCCGTTGTAC-GCGCCCTCCGGGACCGAGGAATCCGG---CGCTCGC-------------------------------CGCCTGGGATGCTG-GCGTAATGGCTTTAAGCGACC Fibrodontia_gossypina_AY646100 TAGAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTGAAATCTGGCGGCTCC--GTCGTCCGAGTTGTAACCTGGAGAAGCGTTTTCCGTGCCGGACCGTGTACAATCCCTTGGAACAGGGCGTCATAGAGGGTGAGAATCCCGTCTTTGACACGGACCCCCGGTGCTTGTGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTAAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCTGCCGGGACTCAGCTCCGC-TCTGCGGGGTGCACTTCCCGG-CCGACGGGTCAGCATCGGTTTTGGGGGACGGACAAAGGCGGGAGGAAGGTGGCAGCT-CCGGCTGTGTTATAGCCTCCCGTTGTAC-GCGTCCTCCGGGACCGAGGAATCCGG---CGCTCGC-------------------------------CGCCTGGGATGCTG-GCGTAATGGCTTTAAGCGACC Fibrodontia_brevidens_KC928277 TAGAACTGCGAGTGAAGCGGGAAGAGCTCAAATTTGAAATCTGGCGGCTCC--GCCGTCCGAGTTGTAACCTGGAGAAGCGTTTtCCGTGCCGGACCGTGTACAATCCCTTGGAACAGGGCGTCATAGAGGGTGAGAATCCCGTCTTTGACACGGACCCCCGGTGCCTGTGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAACGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTAAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCTGTCGGGACTCAGCTCCGC-TCTGCGGGGTGCACTTCCCGA-CCGACGGGTCAGCATCGGTTTTCGGGGGCGGACAAAGGCGGGAGGAAGGTGGCAGCT-CCGGCTGTGTTATAGCCTCCCGTTGTAC-GCGTCCCCGGGGACCGAGGAATCCGG---CGCTCG--------------------------------CGCCTGGGATGCTG-GCGTAATGGCTTTAAGCGACC Trechispora_farinacea_EU909231 TAGAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTGAAATCTGGCGGCCCC--GCCGTCCGAGTTGTATTCTGGAGAAGCGTCTTCCGTGCCGGACCGTGTACAATCCCTTGGAACAGGGCGTCGTAGAGGGTGAGAATCCCGTCTTTGACACGGACCCCCGGTGCATGTGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTAAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCTGCCGGAACTCAGCCTTGCTCATGCTTGGTGCACTTTCCGGTCTGACGGGCCAGCATCGGTTTTGGGCGGCGGACACTGGCGAGGGGAAGGTGGCAGCT-CCGGCTGTGTTATAGCCCCCCGTCGCAA-ACGTCGTCTGGGACCGAGGAATCCGG---CGCA----------------------------------AGCCTGGGATGCTG-GCGTAATGGCTTTAAGCGACC Trechispora_nivea_AY586720 TAGAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTGAAATCTGGCGGCTCC--GTCGCCCGAGTTGTATTCTGGAGAAGCGTTTTCCGTGCCGGACCGTGTACAATCCCTTGGAACAGGGCGTCATAGAGGGTGAGAATCCCGTCTTTGACACGGACTCCCGGTGCATGTGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTAAACCAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCTGCCGGAACTCAGCCTTGCTTCTGCTCGGTGCACTTTCCGGTTCGACGGGCCAGCATCGGTTTTGGGCGGCGGACACTGGCGCGGGGAAGGTGGCAGCT-CCGGCTGTGTTATAGCCCCGCGTCGCAA-ACGCCGTCCGGGACCGAGGAATCCGG---CGCG----------------------------------AGCCTGGGATGCTG-GCGTAATGGCTTTAAACGACC Trechispora_confinis_AY586719 TAGAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTGAAATCTGGCGGCTCC--GTCGTCCGAGTTGTATTCTGGAGAAGCGTCTTCCGCGCCGGACCGTGTACAATCCCTTGGAACAGGGCGTCACAGAGGGTGAGAATCCCGTCTTTGACACGGACCCCCGGTGCATGCGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAACGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTAAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCTGCCGGAACTCAGCCTTGCTTCTGCTCGGTGCACTTTCCGGTTCGACGGGCCAGCATCGGTTTCGAGCGGCGGACACTGGCGAGGGGAAGGTGGCGGCT-CCGGCCGCGTTATAGCCCCACGTCGCGA-ACGTCGCCCGGGACCGAGGAATCCGG---CGCA----------------------------------AGCCTGGGATGCTG-GCGTAATGGCTTTAAACGACC Subulicystidium_longisporum_AJ406422 TAGAACTGCGAGTGAAGCGGGAAGAGCTCAAATTTGAAATCTGGCGGTTCT--GCCGTCCGAGTTGTAATCTGGAGAAGCGTTTTCCGTGCCGGACCGTGTACAATCCCTTGGAACAGGGCGTCATAGAGGGTGAGAATCCCGTCTTTGACACGGACTCCCGGTGCCTGCGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTAAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGGAGTCAGTCGCGTCTTCCGGAACTCAGCCTTGCTTCTGCTAGGTGCACTTTCCGGTTCGACGGGTCAGCATCGGCTTTGGGAGGCGGACAAAGGCGCGGGGAAGGTGGCAGCT-CCGGCTGTGTTATAGCCCCGCGTTGTAC-GCGTCTCCCGGGACCGAGGAATCCGG---CGCTCGT-------------------------------CGCCTGGGATGCTG-GCGTAATGGCTTTAAGCGACC Tubulicium_vermiferum_AY463477 TAGAACTGCGAGTGAAGCGGGATGAGCTCAAATTTGAAATCTGGCGGCTCC--G-CGTCCGAGTTGTAACCTGGAGAAGCGTTTTCCGTGCCGGACCGCATACAATCCTCTGGAACGGGGCGTCGTAGAGGGTGAGAATCCCGTCTTTGATGCGGACTGCCGGTGCCTGTGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAACGGGTGGTGAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTAAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGACGTCAGTCGCGTCGTCCGGAACTCAGCCCTGCTTCTGCTCGGTGCACTTTCCGGTTCGACGGGCCAGCATCGGTTTCGGTGGGCGGACAAAGGCGAGGGGAAGGTGGCAGCTCCCGGCTGTGTTATAGCC-CTCGTTGTAC-GCGTCCGCTGGGACCGAGGAATCCGG---CGCTCGT-------------------------------CGCCTGGGATGCTG-GCGTAATGGCTTTAAGCGACC Porpomyces_mucidus_AF347093 TAGAACTGCGAGTGAAGCGGGAAGAGCTCAAATTTGTAATCTGGCGGTTCT--GCCGTCCGAGTTGTAATCTGGAGAAGCGTTTTCCGTGCCGGACCGTGTACAATCCCTTGGAACAGGGCGTCATAGAGGGTGAGAATCCCGTCTCTGACACGGACTGCCGGTGCCTGCGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTAAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCTTCCGGAACTCAGCCTTGCTTCTGCTCGGTGCACTTTCCGGTGTGACGGGCCAGCATCGGCTTCGCGGGGCGGACAAAGGGGAGGGGAAGGTGGCAGCT-CCGGCTGTGTTATAGCCCCTCTCTGCAC-GCGTCCCGCGGGGCCGAGGAATCCGG---CGCTTG--------------------------------CGCCTGGGATGCTG-GCGTAATGGCTTTAAGCGACC Sistotremastrum_suecicum_EU118667 TAGAACGGCGAGTGAAGCGGGAAAAGCTCAAATTTGAAATCTGACGGTCTTTGGTCGTCCGAGTTGTAGTCTGGAGAAGTGCTTTCTGTGCTGGACCGTGTACAATCTCTTGGAACAGAGCGTCATAGAGGGTGAGAATCCCGTCTTTGACACGGACTACCAGTGCATATGATGCGCTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTAAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGTGTCTGCTGGGACTCAGCCTGGCTTTTGCCTGGTGCACTTCCCTG-TTGACAGGCCAACATCAATTTTGATCGGCAGACAAAGGCTGAGGAAATGTGGCAGCC-TCGGCTGTGTTATAGTCCTCAGTTGTAC-ATGTCGATTGGGATTGAGGAATCCGGACACGCAAGT-------------------------------GTTGTGGGATGTTG-GCGTAATGGCTTTAAACGACC Brevicellicium_olivascens_JN649327 TAGAACTGCGAGTGAAGCGGGATGAGCTCAAATTTGAAATCTGACGGTTCC--GCCGTCCGAGTTGTAATCTGGAGAAGTGCTTTCCGCGCTGGACCGTGTACAATCTCTTGGAATAGAGCGTCATAGAGGGTGAGAATCCCGTCTTTGACACGGACTGCCAGGGCATGTGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAACGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTGAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCTGCCGGAATTCAGCCTTGCTTCTGCTTGGTGCACTTTCCGGTCTGACGGGTCAGCATCGGTTTCTG-GGCCGGACAAACGCGCGGGGAAGGTGGCACCT-CCGGGTGTGTTATAGCCCTGCGTTGCACAACGGCTCGAGGGACCGAGGAAAACCG------GCTT-------------------------------ACCCCGGGATGCTG-GCGTAATGGCTTTAAGCGACC ; END; BEGIN TREES; Title 'Trees from "Fibrodontia & allied fungi LSU Bayesian analysis.tre"'; LINK Taxa = Taxa; TRANSLATE 1 Hyphodontia_subalutacea_DQ340362, 2 Hyphodontia_floccosa_DQ873618, 3 Fibrodontia_alba_KC928275, 4 Fibrodontia_alba_JQ612714, 5 Fibrodontia_gossypina_AY646100, 6 Fibrodontia_brevidens_KC928277, 7 Trechispora_farinacea_EU909231, 8 Trechispora_nivea_AY586720, 9 Trechispora_confinis_AY586719, 10 Subulicystidium_longisporum_AJ406422, 11 Tubulicium_vermiferum_AY463477, 12 Porpomyces_mucidus_AF347093, 13 Sistotremastrum_suecicum_EU118667, 14 Brevicellicium_olivascens_JN649327; TREE con_50_majrule = (1:0.041303065235179,2:0.006139697607342234,((((3:0.001382840756450916,4:0.00142705800714703):0.02107779639726234,5:0.005618783132185626):0.00658882229084422,6:0.01471512281138465):0.03783044028536763,(7:0.02390699532192813,8:0.01607382014009231,9:0.03020556054049757):0.0258121936479896,(10:0.01781931304430437,12:0.03905583962267032):0.008986719165748705,11:0.05190429720288371,13:0.1906410758922327,14:0.1060431766315973):0.1316899226768737); END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 594; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 594; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 594; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1371903034283; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7820909849238417976; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 3918264766385878079; mqVersion 275; checksumv 0 3 1789055219 null getNumChars 594 numChars 594 getNumTaxa 14 numTaxa 14 short true bits 1152921504606846991 states 15 sumSquaresStatesOnly 157633.0 sumSquares 157633.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 287; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1366 629; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #7820909849238417976 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #7820909849238417976; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; getTable; tell It; rowNamesWidth 205; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1079 562; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; showTrees 0 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 1; getWindow; tell It; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1079 562; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #7820909849238417976 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1900.1371900099053.8537348630898706573; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1079 562; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #3918264766385878079 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 207; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1079 562; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;