NEXUS
[File created by TreeBASE:  7/26/07  20:56:33]
[Matrix accession#: M425]

BEGIN TAXA;
	TITLE M425;
	DIMENSIONS  NTAX=10;
	TAXLABELS
		Pelodera_strongyloides	Teratorhabditis_palmarum	Pellioditis_typica	Rhabditella_axei	Rhabditis_blumi	Rhabditis_myriophila	Caenorhabditis_sp._CB5161	Caenorhabditis_elegans	Caenorhabditis_remanei	Caenorhabditis_briggsae
	;
END;

BEGIN CHARACTERS;
	TITLE M425;
	DIMENSIONS NCHAR=36;
	FORMAT SYMBOLS = " 0 1 2 3 4 5 " MISSING = ? GAP = -  ;
	CHARSTATELABELS
		1 'Fan- anterior conformation' / _ open closed, 2 'Fan-  anterior position' / _ near_base_of_spicules near_cloaca, 3 'Fan-  extension' / _ broad narrow, 4 'Body shape-  overall shape' / _ blunt elongate, 5 'Body shape-  tail tip' / _ peloderan leptoderan, 6 'Phasmid-  position' / _ posterior lateral, 7 'Rays-  ray 8' / _ present absent, 8 'Rays-  tip position for 1,:2,4,' / _ at_margin on_dorsal_or_ventral_surface, 9 'Rays-  ray 6' / _ 'narrow, uniform, open' 'broad, tapered, closed', 10 'Rays-  ray 3 position' / _ separate tendency_to_fuse_with_ray_4, 11 Overall_retraction / _ strong weak, 12 'Terminal cells-  retraction' / _ present absent, 13 'Terminal c:ells-  fusion' / _ do_not_fuse fuse, 14 'Ray cell associations-  ray 1' / _ R1.p 'R1.p+R2.p' 'R2.p+R3.p' 'R3.p+R4.p', 15 'Ray cell associati:ons-  ray 2' / _ R2.p 'R2.p+R3.p' R3.p 'R3.p+R4.p', 16 'Ray cell associations-  ray 3' / _ R3.p 'R2.p+R3.p' 'R3.p+R4.p' R6.p, 17 'Ray cell associations-  ray 4' / _ R4.p 'R4.p+R6.p' R6.p 'R6.p+R7.p', 18 'Ray cell associations-  ray 5' / _ R5.p 'R4.p+R6.p' 'R5.p+R6.p', 19 'Ray cell associations-  ray 6' / _ R6.p 'R6.p+R7.p', 20 'Ray cell associations-  ray 7' / _ R7.p 'R7.p+R9.p' migrates_into_R7.p, 21 'Ray cell associations-  ray 8' / _ R8.p R7.p '(No ray 8)', 22 'DV position of Rnst-  ray 1' / _ 'seam-hyp 7 border' within_set, 23 'DV position of Rnst-  ray 2' / _ 'seam-hyp 7 border' within_hyp_7, 24 'DV position of Rnst-  ray 4' / _ 'seam-hyp 7 border' within_hyp_7, 25 'se-:set boundary position' / _ near_base_of_spicules near_cloaca, 26 'Rn.p position-  R1.p' / _ within_seam ventral_of_seam, 27 'Rn.p position-  R2.p' / _ within_seam ventral_of_seam, 28 'Rn.p position:-  R6.p' / _ ventral_of_seam within_seam, 29 'Rn.p position-  R9.p' / _ strictly_lateral extends_to_dorsal_midline, 30 'Rn.p cell fusions-  R1.p' / _ remains_unfused 'fuses with R2.p+R3.p' fuses_with_set fuses_with_se, 31 'Rn.p cell fusions-  R2.p' / _ remains_unfused 'fuses with R2.p+R3.p' fuses_with_set fuses_with_se, 32 'Rn.p cell fusions-  R3.p' / _ remains_unfused 'fuses with R2.p+R3.p' fuses_with_set fuses_with_se, 33 'Rn.p :cell fusions-  R4.p' / _ remains_unfused fuses_with_set fuses_with_se, 34 'Rn.p cell fusions-  R5.p' / _ remains_unfused fuses_with_R7.p 'fuses with R6.p+R7.p' fuses_with_set fuses_with_hyp7_or_maybe_se, 35 'Rn.p cell fusions:-  R6.p' / _ remains_unfused 'fuses with R5.p+R7.p' fuses_with_se fuses_with_hyp7, 	36 'Rn.p cell fusions-  R7.p' / _ remains_unfused fuses_with_R5.p 'fuses with R5.p+R6.p' fuses_with_hyp7
	;
	MATRIX
		Pelodera_strongyloides          111112111111133443211111111114443242
		Teratorhabditis_palmarum        111112111111144441231111122212221323
		Pellioditis_typica              111111111111112232121111111214443242
		Rhabditella_axei                1122211111221122412111111111144435{34}4
		Rhabditis_blumi                 111121211112111112113111111111111144
		Rhabditis_myriophila            111121111112111112112111111111111144
		Caenorhabditis_sp._CB5161       221111122111222321211222211123332444
		Caenorhabditis_elegans          221111122111222321211222211123332444
		Caenorhabditis_remanei          221111122111222321211222211123332444
		Caenorhabditis_briggsae         221111122211222321211222211123332444
	;
END;

BEGIN ASSUMPTIONS;
USERTYPE TvPars STEPMATRIX = 4 
 0 1 2 3 
 . 1 0 1 
 1 . 1 0 
 0 1 . 1 
 1 0 1 . 
 ; 
 
 USERTYPE Tv2Ts STEPMATRIX = 4 
 0 1 2 3 
 . 2 1 2 
 2 . 2 1 
 1 2 . 2 
 2 1 2 . 
 ; 
 
 USERTYPE GapsOnly STEPMATRIX = 4 
 0 1 2 3 
 . 0 0 0 
 0 . 0 0 
 0 0 . 0 
 0 0 0 . 
 ; 
 
 OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 CHARSET MaleTail = 1 - 36 ; 
 CHARSET MaleMulti = 14 - 18 30 - 36 ; 
 CHARSET MaleIndep = 1 6 9 - 36 ; 
 CHARSET MaleNonind = 2 - 5 7 - 8 ; 
 CHARSET Fusions = 31 - 34 ; 
 TYPESET * MUnDUn = unord: 1 - 36 ; 
 TYPESET MOrdDUn = unord: 1 - 13 19 - 29 , ord: 14 - 18 30 - 36 ; 
 TYPESET MUnDTv2Ts = unord: 1 - 36 ; 
 TYPESET MOrdDTv2Ts = unord: 1 - 13 19 - 29 , ord: 14 - 18 30 - 36 ; 
 TYPESET MUnDTvPar = unord: 1 - 36 ; 
 TYPESET MOrdDTvPar = unord: 1 - 13 19 - 29 , ord: 14 - 18 30 - 36 ; 
 TYPESET MUnDgaps = unord: 1 - 36 ; 
 TYPESET MOrdDgaps = unord: 1 - 13 19 - 29 , ord: 14 - 18 30 - 36 ; 
 WTSET * AllEqual = 1: 1 - 36 ; 
 WTSET Lps5Stms4 = 5: 1 - 36 ; 
 WTSET Lps2Stms1 = 2: 1 - 36 ; 
 EXSET NoAmbNonin = 2 - 5 7 - 8 ; 
 EXSET NoMaleTail = 1 - 36 ; 
 END;