#NEXUS [written Fri Sep 23 20:34:41 MST 2016 by Mesquite version 3.10 (build 765) at JustinTime.PK5001Z/192.168.0.40] BEGIN TAXA; DIMENSIONS NTAX=17; TAXLABELS 'Calonectria_naviculata_CBS.101121_*_GQ267317.1|' 'Gliocephalotrichum_bulbilium_CPC.23333_*_KF513434.1|' 'Gliocephalotrichum_cylindrosporum_CBS.902.70_*_KF513435.1|' 'Gliocephalotrichum_longibrachium_CBS.126571_*_KF513449.1|' 'Calonectria_ilicicola_CBS.190.50_*_AY725726.1|' 'Curvicladiella_cignea_CBS.101411_*_KM231866.1|' 'Curvicladiella_cignea_CBS.109168_*_KM231868.1|' 'Gliocladiopsis_sagariensis_CBS.199.55_*_JQ666107.1|' PS0221| PS0768| PS0772| PS0427| PS1001.EF1f| 'Gliocladiopsis_irregularis_CBS.755.97_*_JQ666099.1|' 'Gliocladiopsis_pseudotenuis_CBS.116074_*_JQ666106.1|' 'Xenocylindrocladium_serpens_CBS.128439_*_KM231894.1|' 'Xenocylindrocladium_guianense_CBS.112179_*_KM231895.1|' ; END; BEGIN CHARACTERS; DIMENSIONS NCHAR=534; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX 'Calonectria_naviculata_CBS.101121_*_GQ267317.1|' CGACGGCCGA--------TTTCCGAGTCCGCCGTGGCTGCCACACCCGAAACATCCTCTGGGCCCCGGGCCCCGCTCCTCCCCTCCCCTC-----GACATCGAAAAATTTTTTGCGCACATC--CTTTGTTTT--GTGGT-GGGGCAA-TTACCCCGCCGCCCACAGGACGTCGC----AAACTT---GCACTGCCCCACTT-----TACTTCCGCACCCGATCGCCTCT--TGCATCTA-GTCATGT---------TGACACTGT--GCTGACTCCCAC---CAACAGGAAGCCGCCGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACGATGTCACCGTCATTGGTAAGCTT-------------TCACTCCCTCAA-----CCCGAGGTGTTCACACATGGTCTAAC-AGTCAACCAATAGACGCTCCCGGTCACCGTGACTTTCATC- 'Gliocephalotrichum_bulbilium_CPC.23333_*_KF513434.1|' CGATCGTCACACAAGACTTTTCCCACGATGCTGCGCCTTC---ATCCGAAACGCTCATC----------TTCCGTTACCCCTCCTTC-GA-----TC--GAAAAAAAATTTCTG-CCACATC--CTGTGGGAA--TTAGT-GGGGCAC-TTACCCCGCCTCCCACAGGTCGTTGG--AAAAATTTCACACT-TGCCCCACCATCACCCAGTACAGCAAA---TCACTGTCA-CGGGTTCT-ATCATCTGATCTT---TGACACGAT--GCTAACTGGATTGTCAAATAGGAAGCCGCCGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTGAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCCCGCTACTATGTCACCGTCATTGGTAAGCTT-------------CACCTGCTGCAACCATATCATCAAAGATGACACATCCGCTAAC-TCTCCATCTCCAGACGCCCCCGGTCACCGTGACTTTCATC- 'Gliocephalotrichum_cylindrosporum_CBS.902.70_*_KF513435.1|' CGACAGTCGAA-------TCTCCTGCGACGCCGCGCATC----ACCCGAAACGCTTATC-----------CCCGCTACCCCTCCTTCGCTTTCGATCGAGAAAAAAAATTTCTGCCCACATC--TTGTG------GGAGT-GGGGCAT-CTACCCCGCCACCCACAGGACGTTGG--AAATTTTTCACACTCTGCCCCAC-------CTCCACAAC------TCACTGTCA-CGGGTTTC-GTCACCTGCTCCTCAATGACACTTT--GCTAACTGGACTGTCAAATAGGAAGCCGCCGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCTCTCTGGAAGTTCGAGACTCCCCGCTACTATGTCACCGTCATTGGTAAGCTC-------------CACCCGCCTTGTCT---CACTTGAGAGATGCACAGTTGCTAACATGTTCCCCCACAGACGCTCCCGGTCACCGTGACTTTCATC- 'Gliocephalotrichum_longibrachium_CBS.126571_*_KF513449.1|' CGACTGTCGA--------TTTCCTGCGACGCCGCATCCAC---ACACGAAACGCTTATC-----------CCCGCTACCCCTCCTTC-GCTTCGATCGAGAAAAAAAAATTTCGCCCACGTT--CTGTG------GGAGT-GGGGCAC-TTACCCCGCCACCCACAGGACGCTGGAAAAAAAATTCACACTCTGCCCCAC-------CACAACACCAC----TCTTCATCC-CGGGCTTT-ATCACCTGCTGCTTATTGACACAAT--GCTAACTGGGTTGTCAAATAGGAAGCCGCCGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCTCTCTGGAAGTTCGAGACTCCCCGCTACTATGTCACCGTCATTGGTAAGCTT-------------CACCT--CTCACTTCATCTCACCATGAGATCATCGTTACTAAC-ATCTCCTCCCCAGACGCTCCCGGTCACCGTGACTTTCATC- 'Calonectria_ilicicola_CBS.190.50_*_AY725726.1|' -GACCGTCGA---------TTCGCGCGTCGCCGTGTCTGCTCCACCCGAAACACCTCCC-----------CTCGCCACCCCTCTTTG--------TCGATCTAAAAATTTTCTGCACACATC--CTCTGGGTTT-GTGGTGGGGGCAT-TTACCCCGCCGCCCACAGGACGTCGT---CAAACCC---GCCCCGCCCCACTTTGAC-TTTCGCACCAAA---TCACATTTG--GCATCTC-GCCACACATATTGAT-TGACACTGT--GCTGACTCTCAC---AAACAGGAAGCCGCTGAACTCGGCAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCTCTCTGGAAGTTCGAGACTCCCAAGTACGATGTCACCGTCATTGGTAAGTCTTAATACTACTCAGCTTCTGTCCT---------------------TCAGCCTCTAAC-CGACTCTCAACAGACGCTCCCGGTCACCGTGACTTTCATC- 'Curvicladiella_cignea_CBS.101411_*_KM231866.1|' CGACCGTCGA--------TTTCT--AGTCGCCGCGTCTTCA--ATCCGAAACGC-CACT----------GCTCGCTTCCCCCCTCCTTG------ACGAACGAAAAAAAATTCACCCACAAC--TTTGTGCTTCGGGAGT-GGGGCTT-CTACCCCGCCGCCCACACGACGTCGC----AAATTT----CCCTACCCCAC-------CAGAGCAACACC---ACCATCCCACCGTGTCTTAGTCACATGTTTTC---TGAAGCGCT--GCTGACTCTCAT---CAATAGGAAGCCGCCGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACGATGTCACCGTCATTGGTAAGCTT-------------TATCTACCTCGCAAAATCTCGCAATTTCA--------TCTAAC-CATCAATGAATAGATGCCCCCGGTCACCGTGACTTTCATC- 'Curvicladiella_cignea_CBS.109168_*_KM231868.1|' CGACCGTCGA--------TTTCT--AGTCGCCGCGTCTTC--AATCCGAAACGC-CACT----------GCTCGCTTCCCCCCTCCTTG------ACGAACGAAAAAAAATTCACCCACAAC--TTTGTGCTTCGGGAGT-GGGGCTT-CTACCCCGCCGCCCACACGACGTCGC----AAATTT----CCCTACCCCACCAGAGC-AACACCACCA---------TCCCACCGTGTCTTAGTCACATGTTTTC---TGAAGCGCT--GCTGACTCTCAT---CAATAGGAAGCCGCCGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACGATGTCACCGTCATTGGTAAGCTT-------------TATCTACCTCGCAAAATCTCGCAATTTCA--------TCTAAC-CATCAATGAATAGATGCCCCCGGTCACCGTGACTTTCATC- 'Gliocladiopsis_sagariensis_CBS.199.55_*_JQ666107.1|' CGGCCGTCGA--------TTTCCCACGTCGCCGCGCCCGC---TTCCGAAACGCACACC----------CCTCGCTTCCCCTCC-----------CACGAACAAATTTTTTTTACCCACATT--CTCTGGTTT--GTGGT-GGGGCACTTTACCCCGCCACCCACAGGACGTTGGC-AAAAATTC---ACCCTGCCCCAC-------TATAGCAACACTGAATGGCTATCA-CGCCTCAC-GTCACATGTC------TGCGACAGT--ACTAACCGTCATGTTCTATAGGAAGCCGCTGAGCTCGGCAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCTGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACTCCCCGCTACTTCGTCACCGTCATTGGTAAGCCT-------------CTTTCCTCTCATGCAAGCCTC----ATTGAATCAAGTTCTAAC--TCGTACCTCCAGACGCTCCCGGTCACCGTGA-TTTCATC- PS0221| -GGCCGTCGA--------TTTCCCACGTCGCCGCGTCCGC---TTCCGAAACGCACACC----------CCTCGCTCCCCCTCCTTC--------CACGAACAAATTTTTTTTACCCACATT--CTCTGGTTT--GTGGT-GGGGCACTTTACCCCGCCACCCACAGGACGTTGGCAAAAAAATC---ACCCTGCCCCAC-------TACAGCAACACTGAATGGCTATCA-CGCCTCTC-GTCACATGTCTG----CGACACAGT--ACTAACTGTCATGTTCTATAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACCCCCCGCTACTTCGTCACCGTCATTGGTAAGCTT-------------CTTCCCTCTCATGCAAGCCTCTTCAGTCGACCCGAGTACTAAC-CTATCATCTCCAGACGCTCCCGGTCACCGTGA-TTTCATC- PS0768| -GGCCGTCGA--------TTTCCCACGTCGCCGCGTCCGC---TTCCGAAACGCACACC----------CCTCGCTCCCCCTCCTTC--------CACGAACAAATTTTTTTTACCCACATT--CTCTGGTTT--GTGGT-GGGGCACTTTACCCCGCCACCCACAGGACGTTGGCAAAAAAATC---ACCCTGCCCCAC-------TACAGCAACACTGAATGGCTATCA-CGCCTCTC-GTCACATGTCTG----CGACACAGT--ACTAACTGTCATGTTCTATAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACCCCCCGCTACTTCGTCACCGTCATTGGTAAGCTT-------------CTTCCCTCTCATGCAAGCCTCTTCAGTCGACCCGAGTACTAAC-CTATCATCTCCAGACGCTCCCGGTCACCGTGA-TTTCATC- PS0772| -GGCCGTCGA--------TTTCCCACGTCGCCGCGTCCGC---TTCCGAAACGCACACC----------CCTCGCTCCCCCTCCTTC--------CACGAACAAATTTTTTTTACCCACATT--CTCTGGTTT--GTGGT-GGGGCACTTTACCCCGCCACCCACAGGACGTTGGCAAAAAAATC---ACCCTGCCCCAC-------TACAGCAACACTGAATGGCTATCA-CGCCTCTC-GTCACATGTCTG----CGACACAGT--ACTAACTGTCATGTTCTATAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACCCCCCGCTACTTCGTCACCGTCATTGGTAAGCTT-------------CTTCCCTCTCATGCAAGCCTCTTCAGTCGACCCGAGTACTAAC-CTATCATCTCCAGACGCTCCCGGTCACCGTGA-TTTCATC- PS0427| -GGCCGTCGA--------TTTCCCACGTCGCCGCGTCCGC---TTCCGAAACGCACACT----------CCTCGCTCCCCCTCCTTC--------CACGAACAAATTTTTTTTACCCACATT--CTCTGGTTT--GTGGT-GGGGCACTTTACCCCGCCACCCACAGGACGTTGGCAAAAAAATC---ACCCTGCCCCAC-------TACAGCAACACTGAATGGCTATCA-CGCCTCTC-GTCACATGTCTG----CGACACAGT--ACTAACTGTCATGTTCTATAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACCCCCCGCTACTTCGTCACCGTCATTGGTAAGCTT-------------CTTCCCTCTCATGCAAGCCTCTTCAGTCGACCCGAGTACTAAC-CTATCATCTCCAGACGCTCCCGGTCACCGTGA-TTTCATC- PS1001.EF1f| ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATC---ACCCTGCCCCACG------TACAGCAACACTGAATGGCTATCA-CGCCTCTC-GTCACATGTCTG----CGACACAGT--ACTAACTGTCATGTTCTATAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACCCCCCGCTACTTCGTCACCGTCATTGGTAAGCTT-------------CTTCCCTCTCATGCAAGCCTCTTCAGTCGACCCGAGTACTAAC-CTATCATCTCCAGACGCTCCCGGTCACCGTGA-TTTCATC- 'Gliocladiopsis_irregularis_CBS.755.97_*_JQ666099.1|' CGGCCGTCGA--------TTTCCCACGTCGCCGCGTCCGC---TTCCGAAACGCACACC----------CCTCGCTCCCCCTCCTTC--------CACGAACAAA-TTTTTTTACCCACATT--CTCTGGTTT--GTGGT-GGGGCACTTTACCCCGCCACCCACAGGACGTTGGC-AAAAAATC---ACCCTGCCCCAC-------TACAGCAACACTGAATGGCTATCA-CGCCCCTC-GTCACATGTCTG----CGACACAGT--ACTAACTGTCATGTTCTATAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACCCCCCGCTACTTCGTCACCGTCATTGGTAAGCTT-------------CTTCCCTCTCATGCAAGCCTCCTCAGTAGACCCGAGTACTAAC-CTATCACCTCCAGACGCTCCCGGTCACCGTGA-TTTCATC- 'Gliocladiopsis_pseudotenuis_CBS.116074_*_JQ666106.1|' CGGCCGTCGA--------TTTCCCACGTCGCCGCGTCCGC---TTCCGAAACGCACACC----------CCTCGCTCCCCCTCCTTC--------CACGAACAAA-TTTTTTTACCCACATT--CTCTGGTTT--GTGGT-GGGGCACTTTACCCCGCCACCCACAGGACGTTGGCAAAAAAATC---ACCCTGCCCCAC-------TACAGCAACACTGAATGGCTATCA-CGCCTCTC-GTCACATGTCTG----CGACACAGT--ACTAACTGTCATGTTCTATAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACCCCCCGCTACTTCGTCACCGTCATTGGTAAGCTT-------------CTTCCCTCTCATGCAAGCCTCTTCAGTAGACCCGAGTACTAAC-CTATCATCTCCAGACGCTCCCGGTCACCGTGA-TTTCATC- 'Xenocylindrocladium_serpens_CBS.128439_*_KM231894.1|' GGGCCGTCGAT-------TTTTACACATCGCCGCGCCTGC---ACCCGAAACGTTTACC----------CCTC----------------------CACGATCGAAAATTTTTTACCCACACTTGTTTTGGTTTTTGTGGT-GGGGCA--TTACCCCGCCGCCCACAGGACGTCGC--AAAATTTT---GCCCTGCCCCAC-------CACAACACCAAA---TTCTCCTCGCCGCATCTG-GTCACATGTTTCT---TGAAGCAGTACACTGACTTGCATCAACAACAGGAAGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACCCCCAAGTACCAGGTCACCGTCATTGGTAAGCTC-------------CTGCTGCACC----------------------------------------------GATGCTCCCGGTCACCGTGACTTTCATC- 'Xenocylindrocladium_guianense_CBS.112179_*_KM231895.1|' CGGCCGTCGAT-------TATCACACGTCGCCGCGTCTGC---ACCCGAAACGCCTACC----------CCTCG-------------------------ATTGAAAATTTTTTACCCACTTC--CTCTTGGTTTTGTGGTGGTGGGGCATTACCCCGCCGCCCACACGACGTTCG--CAAAATTT---ACCCTGCCCCAC-------CACAACACCAAAACTTCCCTACC--CGCACCTG-GTCACATGTTCT----TGATGCAGT-TACTGACTCGCAA---CAATAGGAAGCCGCCGAGCTCGGTAAGGGTTCCTTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGATATCGCCCTCTGGAAGTTCGAGACCCCCAAGTACCAGGTCACCGTCATTGGTAAGCTG-------------CCACCGCACCGT-----CTGCTCACGTTGACACTTGTTCTAAC-TATCCCATCACAGATGCTCCCGGTCACCGTGACTTTCATC- ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 534; END; BEGIN NOTES; TAXABITS NAME = newlyAddedTaxon on = 1 - 17; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 534; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 534; END; BEGIN TREES[!'Parameters: Trees obtained from file RAxML_bipartitions.result.manual2^n1 trees.']; Title TEF_ML_Tree; ID 01575a40874018; LINK Taxa = Taxa; TRANSLATE [0] 1 'Calonectria_naviculata_CBS.101121_*_GQ267317.1|', [1] 2 'Gliocephalotrichum_bulbilium_CPC.23333_*_KF513434.1|', [2] 3 'Gliocephalotrichum_cylindrosporum_CBS.902.70_*_KF513435.1|', [3] 4 'Gliocephalotrichum_longibrachium_CBS.126571_*_KF513449.1|', [4] 5 'Calonectria_ilicicola_CBS.190.50_*_AY725726.1|', [5] 6 'Curvicladiella_cignea_CBS.101411_*_KM231866.1|', [6] 7 'Curvicladiella_cignea_CBS.109168_*_KM231868.1|', [7] 8 'Gliocladiopsis_sagariensis_CBS.199.55_*_JQ666107.1|', [8] 9 PS0221|, [9] 10 PS0768|, [10] 11 PS0772|, [11] 12 PS0427|, [12] 13 PS1001.EF1f|, [13] 14 'Gliocladiopsis_irregularis_CBS.755.97_*_JQ666099.1|', [14] 15 'Gliocladiopsis_pseudotenuis_CBS.116074_*_JQ666106.1|', [15] 16 'Xenocylindrocladium_serpens_CBS.128439_*_KM231894.1|', [16] 17 'Xenocylindrocladium_guianense_CBS.112179_*_KM231895.1|'; TREE tree_1 = ((4:0.113154,3:0.098828):0.019763,((((((10:0.000001,(13:0.000001,12:0.000001):0.00224):0.000001,9:0.000001):0.000001,11:0.000001):0.000001,(14:0.006739,15:0.000001):0.002233):0.014581,8:0.047901):0.135044,((17:0.102283,16:0.079747):0.084712,(5:0.208284,(1:0.195812,(6:0.005362,7:0.004953):0.224461):0.081285):0.045961):0.076324):0.168728,2:0.13255); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1474688081893; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 276287471505849192; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 4247051914988521729; mqVersion 310; checksumv 0 3 2026212401 null getNumChars 534 numChars 534 getNumTaxa 17 numTaxa 17 short true bits 15 states 15 sumSquaresStatesOnly 156236.0 sumSquares 156236.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 274; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1193 723; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #276287471505849192 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 01575a40874018; toggleUseWeights off; endTell; setAssignedID 3101.1474687963183.3311475064758674103; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 919 651; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 1; orientRight; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleColorAssigned off; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '((16:0.079747,17:0.102283):0.042356,((5:0.208284,(1:0.195812,(6:0.005362,7:0.004953):0.224461):0.081285):0.045961,((2:0.13255,(3:0.098828,4:0.113154):0.019763):0.168728,(8:0.047901,((14:0.006739,15:0.000001):0.002233,(11:0.000001,(9:0.000001,(10:0.000001,(12:0.000001,13:0.000001):0.00224):0.000001):0.000001):0.000001):0.014581):0.135044):0.076324):0.042356);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #4247051914988521729 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 919 651; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.chromaseq.ColorQuality.ColorQuality; tell It; toggleAmbiguities on; toggleMarks on; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; getEmployee #mesquite.chromaseq.SourceFileInfoEditor.SourceFileInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;