#NEXUS [written Wed Jul 11 15:36:58 CAT 2012 by Mesquite version 2.75 (build 564) at RakSwam/10.0.0.100] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=55; TAXLABELS Phytophthora_amnicola_CBS131652 Phytophthora_amnicola_VHS19503 Phytophthora_hybrid_MUCC774_A Phytophthora_hybrid_MUCC777_A Phytophthora_hybrid_MUCC778_A Phytophthora_hybrid_MUCC779_A Phytophthora_hybrid_MUCC780_A Phytophthora_hybrid_MUCC781_A Phytophthora_hybrid_MUCC782_A Phytophthora_hybrid_CMW37727_A Phytophthora_hybrid_CMW37728_A Phytophthora_hybrid_CMW37729_A Phytophthora_hybrid_CMW37730_A Phytophthora_hybrid_CMW37731_A Phytophthora_hybrid_CMW37732_A Phytophthora_hybrid_CMW37733_A Phytophthora_hybrid_CMW37734_A Phytophthora_hybrid_VHS5185_A Phytophthora_hybrid_VHS22715_A Phytophthora_fluvialis_CBS129424 Phytophthora_fluvialis_VHS17350 Phytophthora_gonapodyides_MUCC761 Phytophthora_gonapodyides_MUCC776 Phytophthora_litoralis_CBS127953 Phytophthora_litoralis_VHS17085 Phytophthora_megasperma_DDS3432 Phytophthora_megasperma_VHS17183 Phytophthora_PgChlamydo_SLPA121 Phytophthora_PgChlamydo_VHS6595 Phytophthora_PgChlamydo_DDS3753 Phytophthora_PgChlamydo_IMI389731 Phytophthora_hybrid_MUCC774_PG Phytophthora_hybrid_MUCC777_PG Phytophthora_hybrid_MUCC778_PG Phytophthora_hybrid_MUCC779_PG Phytophthora_hybrid_MUCC783_PG Phytophthora_hybrid_MUCC784_PG Phytophthora_hybrid_CMW37727_PG Phytophthora_hybrid_CMW37728_PG Phytophthora_hybrid_CMW37729_PG Phytophthora_hybrid_CMW37730_PG Phytophthora_thermophila_VHS7474 Phytophthora_thermophila_VHS13530 Phytophthora_hybrid_MUCC780_T Phytophthora_hybrid_MUCC781_T Phytophthora_hybrid_MUCC782_T Phytophthora_hybrid_MUCC783_T Phytophthora_hybrid_MUCC784_T Phytophthora_hybrid_CMW37731_T Phytophthora_hybrid_CMW37732_T Phytophthora_hybrid_CMW37733_T Phytophthora_hybrid_CMW37734_T Phytophthora_hybrid_VHS5185_T Phytophthora_hybrid_VHS22715_T Phytophthora_fragariae_PFF309_DQ092832 ; END; BEGIN CHARACTERS; TITLE 'Matrix in file "ASF-updated.nex"'; DIMENSIONS NCHAR=328; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Phytophthora_amnicola_CBS131652 ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACTAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGTGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTCGTGGGCCCCGTGCCCGTAGGCACCAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAAGACAAGGTGGGCGTGACTGTGGCGCTTGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_amnicola_VHS19503 ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACTAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGTGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTCGTGGGCCCCGTGCCCGTAGGCACCAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAAGACAAGGTGGGCGTGACTGTGGCGCTTGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_MUCC774_A ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACTAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGTGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTCGTGGGCCCCGTGCCCGTAGGCACCAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAAGACAAGGTGGGCGTGACTGTGGCGCTTGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_MUCC777_A ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACTAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGTGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTCGTGGGCCCCGTGCCCGTAGGCACCAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAAGACAAGGTGGGCGTGACTGTGGCGCTTGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_MUCC778_A ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACTAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGTGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTCGTGGGCCCCGTGCCCGTAGGCACCAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAAGACAAGGTGGGCGTGACTGTGGCGCTTGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_MUCC779_A ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACTAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGTGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTCGTGGGCCCCGTGCCCGTAGGCACCAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAAGACAAGGTGGGCGTGACTGTGGCGCTTGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_MUCC780_A ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACTAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGTGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTCGTGGGCCCCGTGCCCGTAGGCACCAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAAGACAAGGTGGGCGTGACTGTGGCGCTTGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_MUCC781_A ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACTAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGTGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTCGTGGGCCCCGTGCCCGTAGGCACCAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAAGACAAGGTGGGCGTGACTGTGGCGCTTGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_MUCC782_A ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACTAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGTGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTCGTGGGCCCCGTGCCCGTAGGCACCAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAAGACAAGGTGGGCGTGACTGTGGCGCTTGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_CMW37727_A ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACTAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGTGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTCGTGGGCCCCGTGCCCGTAGGCACCAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAAGACAAGGTGGGCGTGACTGTGGCGCTTGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_CMW37728_A ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACTAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGTGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTCGTGGGCCCCGTGCCCGTAGGCACCAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAAGACAAGGTGGGCGTGACTGTGGCGCTTGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_CMW37729_A ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACTAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGTGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTCGTGGGCCCCGTGCCCGTAGGCACCAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAAGACAAGGTGGGCGTGACTGTGGCGCTTGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_CMW37730_A ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACTAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGTGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTCGTGGGCCCCGTGCCCGTAGGCACCAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAAGACAAGGTGGGCGTGACTGTGGCGCTTGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_CMW37731_A ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACTAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGTGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTCGTGGGCCCCGTGCCCGTAGGCACCAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAAGACAAGGTGGGCGTGACTGTGGCGCTTGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_CMW37732_A ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACTAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGTGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTCGTGGGCCCCGTGCCCGTAGGCACCAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAAGACAAGGTGGGCGTGACTGTGGCGCTTGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_CMW37733_A ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACTAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGTGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTCGTGGGCCCCGTGCCCGTAGGCACCAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAAGACAAGGTGGGCGTGACTGTGGCGCTTGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_CMW37734_A ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACTAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGTGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTCGTGGGCCCCGTGCCCGTAGGCACCAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGAACGAAGACAAGGTGGGCGTGACTGTGGCGCTTGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_VHS5185_A ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACTAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGTGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTCGTGGGCCCCGTGCCCGTAGGCACCAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAAGACAAGGTGGGCGTGACTGTGGCGCTTGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_VHS22715_A ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACTAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGTGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTCGTGGGCCCCGTGCCCGTAGGCACCAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAAGACAAGGTGGGCGTGACTGTGGCGCTTGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_fluvialis_CBS129424 ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACCAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGCGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTTGTCGGCCCCGTACCCGTGGGCACCAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTGGGCGTCACTGTGGCGCTTGTCACGTGCTCGTACCGCGGCCGTGAGTTCGTGCGCGTGGGCTACTACGTCAACAACG Phytophthora_fluvialis_VHS17350 ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACCAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGCGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTTGTCGGCCCCGTACCCGTGGGCACCAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTGGGCGTCACTGTGGCGCTTGTCACGTGCTCGTATCGCGGCCGTGAGTTCGTGCGCGTGGGCTACTACGTCAACAACG Phytophthora_gonapodyides_MUCC761 ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACCAACCCGTTYCAGTTCGAAGTCACGTTCGAGTGCGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGTGCCGAGGACGAGAGCCGCGACCAAGTGCTCGAGGAGGTGCTGGTGGGCCCCGTGCCCGTAGGCACCAACAAGTTCGTGTTCCAGTCTGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTGGGCGTGACTGTGGCGCTCGTCACGTGCTCGTACCGTGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_gonapodyides_MUCC776 ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACCAACCCGTTCCAGTTYGAAGTCACGTTCGAGTGCGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGTGCCGAGGACGAGAGCCGCGACCAAGTGCTCGAGGAGGTGCTGGTGGGCCCCGTGCCCGTAGGCACCAACAAGTTCGTGTTCCAGTCTGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTGGGCGTGACTGTGGCGCTCGTCACGTGCTCGTACCGTGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_litoralis_CBS127953 ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACCAACCCGTTCCAGTTTGAAGTCACGTTCGAGTGCGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTGGTGGGCCCCGTGCCTGTAGGCACTAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTGGGCGTGACTGTGGCGCTCGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_litoralis_VHS17085 ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACCAACCCGTTCCAGTTTGAAGTCACGTTTGAGTGCGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTGGTGGGCCCCGTGCCTGTAGGCACTAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTGGGCGTGACTGTGGCGCTCGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_megasperma_DDS3432 ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACCAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGCGCGCAGCCCCTGGAGGCGGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAAGTGCTGGAGGAAGTGCTGGTGGGCCCCGTCCCCGTGGGTACAAACAAGTTCGTGTTTCAGTCTGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTGGGCGTGACTGTGGCGCTCGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_megasperma_VHS17183 ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACCAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGCGCGCAGCCCCTGGAGGCGGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAAGTGCTGGAGGAAGTGCTGGTGGGCCCCGTCCCCGTGGGTACAAACAAGTTCGTGTTTCAGTCTGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTGGGCGTGACTGTGGCGCTCGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_PgChlamydo_SLPA121 ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACCAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGCGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTGGTGGGCCCCGTACCCGTGGGTACAAACAAGTTCGTGTTCCAGTCTGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTGGGCGTGACTGTGGCGCTCGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_PgChlamydo_VHS6595 ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACCAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGCGCGCAGCCCCTGGAGGCTGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTGGTGGGCCCCGTACCCGTGGGTACAAACAAGTTCGTGTTCCAGTCTGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTGGGCGTGACTGTGGCGCTCGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_PgChlamydo_DDS3753 ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACCAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGCGCGCAGCCCCTGGAGGCTGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTGGTGGGCCCCGTACCCGTGGGTACAAACAAGTTCGTGTTCCAGTCTGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTGGGCGTGACTGTGGCGCTCGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_PgChlamydo_IMI389731 ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACCAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGCGCGCAGCCCCTGGAGGCTGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTGGTGGGCCCCGTACCCGTGGGTACAAACAAGTTCGTGTTCCAGTCTGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTGGGCGTGACTGTGGCGCTCGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_MUCC774_PG ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACCAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGCGCGCAGCCCCTGGAGGCTGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTGGTGGGCCCCGTACCCGTGGGTACAAACAAGTTCGTGTTCCAGTCTGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTGGGCGTGACTGTGGCGCTCGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_MUCC777_PG ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACCAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGCGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTGGTGGGCCCCGTACCCGTGGGTACAAACAAGTTCGTGTTCCAGTCTGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTGGGCGTGACTGTGGCGCTCGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_MUCC778_PG ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACCAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGCGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTGGTGGGCCCCGTACCCGTGGGTACAAACAAGTTCGTGTTCCAGTCTGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTGGGCGTGACTGTGGCGCTCGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_MUCC779_PG ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACCAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGCGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTGGTGGGCCCCGTACCCGTGGGTACAAACAAGTTCGTGTTCCAGTCTGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTGGGCGTGACTGTGGCGCTCGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_MUCC783_PG ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACCAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGCGCGCAGCCCCTGGAGGCTGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTGGTGGGCCCCGTACCCGTGGGTACAAACAAGTTCGTGTTCCAGTCTGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTGGGCGTGACTGTGGCGCTCGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_MUCC784_PG ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACCAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGCGCGCAGCCCCTGGAGGCTGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTGGTGGGCCCCGTACCCGTGGGTACAAACAAGTTCGTGTTCCAGTCTGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTGGGCGTGACTGTGGCGCTCGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_CMW37727_PG ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACCAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGCGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTGGTGGGCCCCGTACCCGTGGGTACAAACAAGTTCGTGTTCCAGTCTGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTGGGCGTGACTGTGGCGCTCGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_CMW37728_PG ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACCAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGCGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTGGTGGGCCCCGTACCCGTGGGTACAAACAAGTTCGTGTTCCAGTCTGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTGGGCGTGACTGTGGCGCTCGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_CMW37729_PG ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACCAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGCGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTGGTGGGCCCCGTACCCGTGGGTACAAACAAGTTCGTGTTCCAGTCTGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTGGGCGTGACTGTGGCGCTCGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_CMW37730_PG ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACCAACCCGTTCCAGTTCGAAGTCACGTTCGAGTGCGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTGGTGGGCCCCGTACCCGTGGGTACAAACAAGTTCGTGTTCCAGTCTGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTGGGCGTGACTGTGGCGCTCGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_thermophila_VHS7474 ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACCAACCCGTTCCAGTTTGAAGTTACGTTCGAGTGCGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCTGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTGGTCGGCCCCGTGCCCGTAGGCACCAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTGGGCGTGACTGTGGCGCTCGTCACGTGCTCCTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_thermophila_VHS13530 ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACCAACCCGTTCCAGTTTGAAGTTACGTTCGAGTGCGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCTGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTGGTCGGCCCCGTGCCCGTAGGCACCAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTGGGCGTGACTGTGGCGCTCGTCACGTGCTCCTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_MUCC780_T ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACCAACCCGTTCCAGTTTGAAGTTACGTTCGAGTGCGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCTGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTGGTCGGCCCCGTGCCCGTAGGCACCAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTGGGCGTGACTGTGGCGCTCGTCACGTGCTCCTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_MUCC781_T ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACCAACCCGTTCCAGTTTGAAGTTACGTTCGAGTGCGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCTGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTGGTCGGCCCCGTGCCCGTAGGCACCAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTGGGCGTGACTGTGGCGCTCGTCACGTGCTCCTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_MUCC782_T ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACCAACCCGTTCCAGTTTGAAGTTACGTTCGAGTGCGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCTGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTAGTCGGCCCCGTGCCCGTAGGCACCAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTGGGCGTGACTGTGGCGCTCGTCACGTGCTCCTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_MUCC783_T ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACCAACCCGTTCCAGTTTGAAGTTACGTTCGAGTGCGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCTGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTGGTCGGCCCCGTGCCCGTAGGCACCAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTGGGCGTGACTGTGGCGCTCGTCACGTGCTCCTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_MUCC784_T ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACCAACCCGTTCCAGTTTGAAGTTACGTTCGAGTGCGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCTGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTGGTCGGCCCCGTGCCCGTAGGCACCAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTGGGCGTGACTGTGGCGCTCGTCACGTGCTCCTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_CMW37731_T ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACCAACCCGTTCCAGTTTGAAGTTACGTTCGAGTGCGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCTGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTAGTCGGCCCCGTGCCCGTAGGCACCAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTAGGCGTGACTGTGGCGCTCGTCACGTGCTCCTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_CMW37732_T ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACCAACCCGTTCCAGTTTGAAGTTACGTTCGAGTGCGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCTGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTAGTCGGCCCCGTGCCCGTAGGCACCAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTAGGCGTGACTGTGGCGCTCGTCACGTGCTCCTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_CMW37733_T ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACCAACCCGTTCCAGTTTGAAGTTACGTTCGAGTGCGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCTGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTGGTCGGCCCCGTGCCCGTAGGCACCAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTGGGCGTGACTGTGGCGCTCGTCACGTGCTCCTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_CMW37734_T ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACTAACCCGTTCCAGTTTGAAGTTACGTTCGAGTGCGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCTGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTAGTCGGCCCCGTGCCCGTAGGCACCAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTGGGCGTGACTGTGGCGCTCGTCACGTGCTCCTACCGCGGCCGCGAGTTCGTACGCGTGGACTACTACGTCAACAACG Phytophthora_hybrid_VHS5185_T ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACCAACCCGTTCCAGTTTGAAGTTACGTTCGAGTGCGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCTGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTAGTCGGCCCCGTGCCCGTAGGCACCAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTGGGCGTGACTGTGGCGCTCGTCACGTGCTCCTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_hybrid_VHS22715_T ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACCAACCCGTTCCAGTTTGAAGTTACGTTCGAGTGCGCGCAGCCCCTGGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCTGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTAGTCGGCCCCGTGCCCGTAGGCACCAACAAGTTCGTGTTCCAGTCCGACCCGCCCAACCCGGACCTCATCCCGGACGAGGACAAGGTGGGCGTGACTGTGGCGCTCGTCACGTGCTCCTACCGCGGCCGCGAGTTCGTACGCGTGGGCTACTACGTCAACAACG Phytophthora_fragariae_PFF309_DQ092832 ACCAACATCACCGTGCTGGACAACCCCACGGCCTTCACGAGCCCCTTCCAGTTCGAGGTCACCTTCGAGTGCGCGCAGCCGCTAGAGGCCGACCTCGAGTGGAAGATCACGTACGTGGGCAGCGCCGAGGACGAGAGCCGCGACCAGGTGCTGGAGGAGGTGCTCGTGGGCCCCGTGCCCGTGGGCACCAACAAGTTCGTGTTCCAGTCGGACCCGCCCAACCCGGACATGATCCCGGACGAGGACAAGGTCGGCGTCACGGTGGCGCTCGTCACGTGCTCGTACCGCGGCCGCGAGTTCGTGCGCGTGGGCTACTACGTCAACAACG ; END; BEGIN TREES; Title 'ASF-like Bayesian inference'; LINK Taxa = Taxa; TRANSLATE 1 Phytophthora_amnicola_CBS131652, 2 Phytophthora_amnicola_VHS19503, 3 Phytophthora_hybrid_MUCC774_A, 4 Phytophthora_hybrid_MUCC777_A, 5 Phytophthora_hybrid_MUCC778_A, 6 Phytophthora_hybrid_MUCC779_A, 7 Phytophthora_hybrid_MUCC780_A, 8 Phytophthora_hybrid_MUCC781_A, 9 Phytophthora_hybrid_MUCC782_A, 10 Phytophthora_hybrid_CMW37727_A, 11 Phytophthora_hybrid_CMW37728_A, 12 Phytophthora_hybrid_CMW37729_A, 13 Phytophthora_hybrid_CMW37730_A, 14 Phytophthora_hybrid_CMW37731_A, 15 Phytophthora_hybrid_CMW37732_A, 16 Phytophthora_hybrid_CMW37733_A, 17 Phytophthora_hybrid_CMW37734_A, 18 Phytophthora_hybrid_VHS5185_A, 19 Phytophthora_hybrid_VHS22715_A, 20 Phytophthora_fluvialis_CBS129424, 21 Phytophthora_fluvialis_VHS17350, 22 Phytophthora_gonapodyides_MUCC761, 23 Phytophthora_gonapodyides_MUCC776, 24 Phytophthora_litoralis_CBS127953, 25 Phytophthora_litoralis_VHS17085, 26 Phytophthora_megasperma_DDS3432, 27 Phytophthora_megasperma_VHS17183, 28 Phytophthora_PgChlamydo_SLPA121, 29 Phytophthora_PgChlamydo_VHS6595, 30 Phytophthora_PgChlamydo_DDS3753, 31 Phytophthora_PgChlamydo_IMI389731, 32 Phytophthora_hybrid_MUCC774_PG, 33 Phytophthora_hybrid_MUCC777_PG, 34 Phytophthora_hybrid_MUCC778_PG, 35 Phytophthora_hybrid_MUCC779_PG, 36 Phytophthora_hybrid_MUCC783_PG, 37 Phytophthora_hybrid_MUCC784_PG, 38 Phytophthora_hybrid_CMW37727_PG, 39 Phytophthora_hybrid_CMW37728_PG, 40 Phytophthora_hybrid_CMW37729_PG, 41 Phytophthora_hybrid_CMW37730_PG, 42 Phytophthora_thermophila_VHS7474, 43 Phytophthora_thermophila_VHS13530, 44 Phytophthora_hybrid_MUCC780_T, 45 Phytophthora_hybrid_MUCC781_T, 46 Phytophthora_hybrid_MUCC782_T, 47 Phytophthora_hybrid_MUCC783_T, 48 Phytophthora_hybrid_MUCC784_T, 49 Phytophthora_hybrid_CMW37731_T, 50 Phytophthora_hybrid_CMW37732_T, 51 Phytophthora_hybrid_CMW37733_T, 52 Phytophthora_hybrid_CMW37734_T, 53 Phytophthora_hybrid_VHS5185_T, 54 Phytophthora_hybrid_VHS22715_T, 55 Phytophthora_fragariae_PFF309_DQ092832; TREE con_50_majrule = (55:0.8743,(20:0.06273,21:0.118831)1.00:0.323125,((1:0.061277,2:0.057967,3:0.060128,4:0.058592,5:0.05942,6:0.058878,7:0.058322,8:0.059448,9:0.058711,10:0.058625,11:0.06129,12:0.06087,13:0.060485,14:0.058832,15:0.059432,16:0.059973,17:0.118692,18:0.060171,19:0.058205)1.00:0.298777,(((22:0.061245,23:0.057345)1.00:0.323955,((26:0.051754,27:0.052618)1.00:0.363599,28:0.054955,(29:0.054475,30:0.055759,31:0.054467,32:0.056199,36:0.054119,37:0.054096)0.75:0.114988,33:0.054674,34:0.054728,35:0.054182,38:0.053986,39:0.054993,40:0.054365,41:0.055241)1.00:0.297618)0.59:0.123353,((24:0.059263,25:0.115677)1.00:0.188931,(42:0.058816,43:0.058719,44:0.060144,45:0.058784,46:0.061433,47:0.059958,48:0.057982,(49:0.059901,50:0.058317)0.97:0.121603,51:0.05836,52:0.181552,53:0.062225,54:0.063266)1.00:0.313666)0.84:0.124267)0.65:0.164726)0.99:0.24532); TREE con_50_majrule = (55:0.8743,(20:0.06273,21:0.118831):0.323125,((1:0.061277,2:0.057967,3:0.060128,4:0.058592,5:0.05942,6:0.058878,7:0.058322,8:0.059448,9:0.058711,10:0.058625,11:0.06129,12:0.06087,13:0.060485,14:0.058832,15:0.059432,16:0.059973,17:0.118692,18:0.060171,19:0.058205):0.298777,(((22:0.061245,23:0.057345):0.323955,((26:0.051754,27:0.052618):0.363599,28:0.054955,(29:0.054475,30:0.055759,31:0.054467,32:0.056199,36:0.054119,37:0.054096):0.114988,33:0.054674,34:0.054728,35:0.054182,38:0.053986,39:0.054993,40:0.054365,41:0.055241):0.297618):0.123353,((24:0.059263,25:0.115677):0.188931,(42:0.058816,43:0.058719,44:0.060144,45:0.058784,46:0.061433,47:0.059958,48:0.057982,(49:0.059901,50:0.058317):0.121603,51:0.05836,52:0.181552,53:0.062225,54:0.063266):0.313666):0.124267):0.164726):0.24532); END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 328; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 328; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 328; END; BEGIN TREES; Title 'ASF-like MP'; LINK Taxa = Taxa; TRANSLATE 1 Phytophthora_amnicola_CBS131652, 2 Phytophthora_amnicola_VHS19503, 3 Phytophthora_hybrid_MUCC774_A, 4 Phytophthora_hybrid_MUCC777_A, 5 Phytophthora_hybrid_MUCC778_A, 6 Phytophthora_hybrid_MUCC779_A, 7 Phytophthora_hybrid_MUCC780_A, 8 Phytophthora_hybrid_MUCC781_A, 9 Phytophthora_hybrid_MUCC782_A, 10 Phytophthora_hybrid_CMW37727_A, 11 Phytophthora_hybrid_CMW37728_A, 12 Phytophthora_hybrid_CMW37729_A, 13 Phytophthora_hybrid_CMW37730_A, 14 Phytophthora_hybrid_CMW37731_A, 15 Phytophthora_hybrid_CMW37732_A, 16 Phytophthora_hybrid_CMW37733_A, 17 Phytophthora_hybrid_CMW37734_A, 18 Phytophthora_hybrid_VHS5185_A, 19 Phytophthora_hybrid_VHS22715_A, 20 Phytophthora_fluvialis_CBS129424, 21 Phytophthora_fluvialis_VHS17350, 22 Phytophthora_gonapodyides_MUCC761, 23 Phytophthora_gonapodyides_MUCC776, 24 Phytophthora_litoralis_CBS127953, 25 Phytophthora_litoralis_VHS17085, 26 Phytophthora_megasperma_DDS3432, 27 Phytophthora_megasperma_VHS17183, 28 Phytophthora_PgChlamydo_SLPA121, 29 Phytophthora_PgChlamydo_VHS6595, 30 Phytophthora_PgChlamydo_DDS3753, 31 Phytophthora_PgChlamydo_IMI389731, 32 Phytophthora_hybrid_MUCC774_PG, 33 Phytophthora_hybrid_MUCC777_PG, 34 Phytophthora_hybrid_MUCC778_PG, 35 Phytophthora_hybrid_MUCC779_PG, 36 Phytophthora_hybrid_MUCC783_PG, 37 Phytophthora_hybrid_MUCC784_PG, 38 Phytophthora_hybrid_CMW37727_PG, 39 Phytophthora_hybrid_CMW37728_PG, 40 Phytophthora_hybrid_CMW37729_PG, 41 Phytophthora_hybrid_CMW37730_PG, 42 Phytophthora_thermophila_VHS7474, 43 Phytophthora_thermophila_VHS13530, 44 Phytophthora_hybrid_MUCC780_T, 45 Phytophthora_hybrid_MUCC781_T, 46 Phytophthora_hybrid_MUCC782_T, 47 Phytophthora_hybrid_MUCC783_T, 48 Phytophthora_hybrid_MUCC784_T, 49 Phytophthora_hybrid_CMW37731_T, 50 Phytophthora_hybrid_CMW37732_T, 51 Phytophthora_hybrid_CMW37733_T, 52 Phytophthora_hybrid_CMW37734_T, 53 Phytophthora_hybrid_VHS5185_T, 54 Phytophthora_hybrid_VHS22715_T, 55 Phytophthora_fragariae_PFF309_DQ092832; TREE PAUP_1 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0,9:0.0,10:0.0,11:0.0,12:0.0,13:0.0,14:0.0,15:0.0,16:0.0,17:0.0,18:0.0,19:0.0):3.0,(((22:0.0,23:0.0):4.0,(((26:0.0,27:0.0):4.0,(29:0.0,30:0.0,31:0.0,32:0.0,36:0.0,37:0.0):1.0):1.0,28:0.0,33:0.0,34:0.0,35:0.0,38:0.0,39:0.0,40:0.0,41:0.0):4.0):1.0,((24:0.0,25:0.0):2.0,(42:0.0,43:0.0,44:0.0,45:0.0,(46:0.0,(49:0.0,50:0.0):1.0,52:1.0,53:0.0,54:0.0):1.0,47:0.0,48:0.0,51:0.0):4.0):1.0):2.0):3.0,(20:0.0,21:0.0):4.0):2.0,55:2.0):0.0; TREE PAUP_2 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0,9:0.0,10:0.0,11:0.0,12:0.0,13:0.0,14:0.0,15:0.0,16:0.0,17:0.0,18:0.0,19:0.0):3.0,(((22:0.0,23:0.0):3.0,((26:0.0,27:0.0):4.0,(28:0.0,(29:0.0,30:0.0,31:0.0,32:0.0,36:0.0,37:0.0):1.0,33:0.0,34:0.0,35:0.0,38:0.0,39:0.0,40:0.0,41:0.0):1.0):4.0):2.0,((24:0.0,25:0.0):2.0,(42:0.0,43:0.0,44:0.0,45:0.0,(46:0.0,(49:0.0,50:0.0):1.0,52:1.0,53:0.0,54:0.0):1.0,47:0.0,48:0.0,51:0.0):4.0):1.0):2.0):3.0,(20:0.0,21:0.0):4.0):2.0,55:2.0):0.0; TREE PAUP_3 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0,9:0.0,10:0.0,11:0.0,12:0.0,13:0.0,14:0.0,15:0.0,16:0.0,17:0.0,18:0.0,19:0.0):3.0,(((22:0.0,23:0.0):4.0,((26:0.0,27:0.0):5.0,28:0.0,(29:0.0,30:0.0,31:0.0,32:0.0,36:0.0,37:0.0):1.0,33:0.0,34:0.0,35:0.0,38:0.0,39:0.0,40:0.0,41:0.0):4.0):1.0,((24:0.0,25:0.0):2.0,(42:0.0,43:0.0,44:0.0,45:0.0,(46:0.0,(49:0.0,50:0.0):1.0,52:1.0,53:0.0,54:0.0):1.0,47:0.0,48:0.0,51:0.0):4.0):1.0):2.0):3.0,(20:0.0,21:0.0):4.0):2.0,55:2.0):0.0; TREE PAUP_4 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0,9:0.0,10:0.0,11:0.0,12:0.0,13:0.0,14:0.0,15:0.0,16:0.0,17:0.0,18:0.0,19:0.0):3.0,(((22:0.0,23:0.0):4.0,(((26:0.0,27:0.0):4.0,(29:0.0,30:0.0,31:0.0,32:0.0,36:0.0,37:0.0):1.0):1.0,28:0.0,33:0.0,34:0.0,35:0.0,38:0.0,39:0.0,40:0.0,41:0.0):4.0):1.0,((24:0.0,25:0.0):2.0,(42:0.0,43:0.0,44:0.0,45:0.0,(46:0.0,(49:0.0,50:0.0):1.0,52:1.0,53:0.0,54:0.0):1.0,47:0.0,48:0.0,51:0.0):4.0):1.0):2.0):3.0,(20:0.0,21:0.0):4.0):2.0,55:2.0):0.0; TREE PAUP_5 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0,6:0.0,7:0.0,8:0.0,9:0.0,10:0.0,11:0.0,12:0.0,13:0.0,14:0.0,15:0.0,16:0.0,17:0.0,18:0.0,19:0.0):3.0,(((22:0.0,23:0.0):4.0,(((26:0.0,27:0.0):5.0,29:0.0,30:0.0,31:0.0,32:0.0,36:0.0,37:0.0):1.0,28:0.0,33:0.0,34:0.0,35:0.0,38:0.0,39:0.0,40:0.0,41:0.0):4.0):1.0,((24:0.0,25:0.0):2.0,(42:0.0,43:0.0,44:0.0,45:0.0,(46:0.0,(49:0.0,50:0.0):1.0,52:1.0,53:0.0,54:0.0):1.0,47:0.0,48:0.0,51:0.0):4.0):1.0):2.0):3.0,(20:0.0,21:0.0):4.0):2.0,55:2.0):0.0; END; BEGIN TREES; Title 'ASF-like MP bootstrap consensus'; LINK Taxa = Taxa; TRANSLATE 1 Phytophthora_amnicola_CBS131652, 2 Phytophthora_amnicola_VHS19503, 3 Phytophthora_hybrid_MUCC774_A, 4 Phytophthora_hybrid_MUCC777_A, 5 Phytophthora_hybrid_MUCC778_A, 6 Phytophthora_hybrid_MUCC779_A, 7 Phytophthora_hybrid_MUCC780_A, 8 Phytophthora_hybrid_MUCC781_A, 9 Phytophthora_hybrid_MUCC782_A, 10 Phytophthora_hybrid_CMW37727_A, 11 Phytophthora_hybrid_CMW37728_A, 12 Phytophthora_hybrid_CMW37729_A, 13 Phytophthora_hybrid_CMW37730_A, 14 Phytophthora_hybrid_CMW37731_A, 15 Phytophthora_hybrid_CMW37732_A, 16 Phytophthora_hybrid_CMW37733_A, 17 Phytophthora_hybrid_CMW37734_A, 18 Phytophthora_hybrid_VHS5185_A, 19 Phytophthora_hybrid_VHS22715_A, 20 Phytophthora_fluvialis_CBS129424, 21 Phytophthora_fluvialis_VHS17350, 22 Phytophthora_gonapodyides_MUCC761, 23 Phytophthora_gonapodyides_MUCC776, 24 Phytophthora_litoralis_CBS127953, 25 Phytophthora_litoralis_VHS17085, 26 Phytophthora_megasperma_DDS3432, 27 Phytophthora_megasperma_VHS17183, 28 Phytophthora_PgChlamydo_SLPA121, 29 Phytophthora_PgChlamydo_VHS6595, 30 Phytophthora_PgChlamydo_DDS3753, 31 Phytophthora_PgChlamydo_IMI389731, 32 Phytophthora_hybrid_MUCC774_PG, 33 Phytophthora_hybrid_MUCC777_PG, 34 Phytophthora_hybrid_MUCC778_PG, 35 Phytophthora_hybrid_MUCC779_PG, 36 Phytophthora_hybrid_MUCC783_PG, 37 Phytophthora_hybrid_MUCC784_PG, 38 Phytophthora_hybrid_CMW37727_PG, 39 Phytophthora_hybrid_CMW37728_PG, 40 Phytophthora_hybrid_CMW37729_PG, 41 Phytophthora_hybrid_CMW37730_PG, 42 Phytophthora_thermophila_VHS7474, 43 Phytophthora_thermophila_VHS13530, 44 Phytophthora_hybrid_MUCC780_T, 45 Phytophthora_hybrid_MUCC781_T, 46 Phytophthora_hybrid_MUCC782_T, 47 Phytophthora_hybrid_MUCC783_T, 48 Phytophthora_hybrid_MUCC784_T, 49 Phytophthora_hybrid_CMW37731_T, 50 Phytophthora_hybrid_CMW37732_T, 51 Phytophthora_hybrid_CMW37733_T, 52 Phytophthora_hybrid_CMW37734_T, 53 Phytophthora_hybrid_VHS5185_T, 54 Phytophthora_hybrid_VHS22715_T, 55 Phytophthora_fragariae_PFF309_DQ092832; TREE PAUP_1 = ((((1:100.0,2:100.0,3:100.0,4:100.0,5:100.0,6:100.0,7:100.0,8:100.0,9:100.0,10:100.0,11:100.0,12:100.0,13:100.0,14:100.0,15:100.0,16:100.0,17:100.0,18:100.0,19:100.0)97:97.0,(22:100.0,23:100.0)98:98.0,((24:100.0,25:100.0)87:87.0,(42:100.0,43:100.0,44:100.0,45:100.0,(46:100.0,(49:100.0,50:100.0)63:63.0,52:100.0,53:100.0,54:100.0)62:62.0,47:100.0,48:100.0,51:100.0)97:97.0)63:63.0,((26:100.0,27:100.0)99:99.0,28:100.0,29:100.0,30:100.0,31:100.0,32:100.0,33:100.0,34:100.0,35:100.0,36:100.0,37:100.0,38:100.0,39:100.0,40:100.0,41:100.0)82:82.0)65:65.0,(20:100.0,21:100.0)99:99.0)100:100.0,55:0.0)0; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1342013819100; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 5444006351475669863; tell It; setSelected 28; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 7624718704378292373; mqVersion 275; checksumv 0 3 1655252454 null getNumChars 328 numChars 328 getNumTaxa 55 numTaxa 55 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 303850.0 sumSquares -1.8446744073709515E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1 errorReportedDuringRun; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1280 694; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #7624718704378292373 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 331; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -67; setLocation -8 -8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;