#NEXUS [written Thu Jul 12 07:07:21 CAT 2012 by Mesquite version 2.75 (build 564) at RakSwam/137.215.68.178] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=35; TAXLABELS Phytophthora_hybrid_MUCC777_A Phytophthora_fluvialis_CBS129424 Phytophthora_fluvialis_MUCC772 Phytophthora_gonapodyides_MUCC776 Phytophthora_gonapodyides_MUCC761 Phytophthora_litoralis_VHS20763 Phytophthora_litoralis_VHS17085 Phytophthora_megasperma_VHS17183 Phytophthora_megasperma_DDS3432 Phytophthora_pgchlamydo_DDS3753 Phytophthora_pgchlamydo_VHS6595 Phytophthora_pgchlamydo_SLPA121 Phytophthora_hybrid_MUCC774_PG Phytophthora_hybrid_MUCC777_PG Phytophthora_hybrid_MUCC778_PG Phytophthora_hybrid_MUCC779_PG Phytophthora_hybrid_MUCC783_PG Phytophthora_hybrid_MUCC784_PG Phytophthora_hybrid_CMW37727_PG Phytophthora_hybrid_CMW37729_PG Phytophthora_hybrid_CMW37730_PG Phytophthora_thermophila_VHS7474 Phytophthora_thermophila_VHS13530 Phytophthora_hybrid_MUCC780_T Phytophthora_hybrid_MUCC781_T Phytophthora_hybrid_MUCC782_T Phytophthora_hybrid_MUCC783_T Phytophthora_hybrid_MUCC784_T Phytophthora_hybrid_CMW37731_T Phytophthora_hybrid_CMW37732_T Phytophthora_hybrid_CMW37733_T Phytophthora_hybrid_CMW37734_T Phytophthora_hybrid_VHS5185_T Phytophthora_hybrid_VHS22715_T Phytophthora_fragariae_PFF309_DQ092858 ; END; BEGIN CHARACTERS; TITLE 'Matrix in file "GPA.nex"'; DIMENSIONS NCHAR=307; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Phytophthora_hybrid_MUCC777_A ATAATTGGCGTGCAGTGCCGCTTCTCCTCTTCAGTTAGCGCTGCGCCGTACAAAATCTGAAAGCAAGAAAATGAAACGGAGTTAGTTT-TCCAGGAGCGACGCCGGAGTC-AACACGGACACGGGACTGAGGACGCACCTTCATCTGCTTGAAGACTGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTAACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTAGCCATCGCCACCCGATCAGAGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_fluvialis_CBS129424 ATAATTGGTGTGCAGTGCCGCTTCTCCTCCTCAGTTAGCGCTGCGCCGTACAGAATCTGAAAGCAAGAGCATGAAGCGGAGTTAGATTCTCCA----------CAGAGTC-AACACGGACACGGCACTGA--ACGCACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCGAGCAGCAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCGGAGTCGCTCATCTGGGACGCACAGAGTCCA Phytophthora_fluvialis_MUCC772 ATAATTGGTGTGCAGTGCCGCTTCTCCTCCTCAGTTAGCGCTGCGCCGTACAGAATCTGAAAGCAAGAGCATGAAGCGGAGTTAGATTCTCCA----------CAGAGTC-AACACGGACACGGCACTGA--ACGCACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCGAGCAGCAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCGGAGTCGCTCATCTGGGACGCACAGAGTCCA Phytophthora_gonapodyides_MUCC776 ATAATTGGTGTGCAGTGCCGCTTCTCCTCTTCCGTGAGCGCTGCGCCGTACAAAATCTGAAG---AGA-----AAACGGAGTTAGCTT-TCCTGAA--GACATCAGACTC-AA---GCGCAGGT---TGTGCACGCACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATATCGCGCGACTTGGCCATCGCCACCCGATCATTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_gonapodyides_MUCC761 ATAATTGGTGTGCAGTGCCGCTTCTCCTCTTCCGTGAGCGCTGCGCCGTACAAAATTTGAAG---AGA-----AAACGGAGTTAGCTT-TCCTGAA--GACATCAGACTC-AA---GCGCAGGT---TGTGCACGCACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATATCGCGCGACTTGGCCATCGCCACCCGATCATTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_litoralis_VHS20763 ATAATTGGTGTGCAGTGCCGCTTCTCCTCCTCAGTTAGCGCTGCGCCGTACAAAATCTGAAAGCAAGAACATGAAACGGAGTTAGTTT-TCCGGGAGCGACGCCGGACTC-AACACGGACACGGGACTGTGGGCGCACCTTCATCTGCTTGAACACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCATTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_litoralis_VHS17085 ATAATTGGTGTGCAGTGCCGCTTCTCCTCCTCAGTTAGCGCTGCGCCGTACAAAATCTGAAAGCAAGAACATGAAACGGAGTTAGTTT-TCCGGGAGCGACGCCGGACTC-AACACGGACACGGGACTGTGGGCGCACCTTCATCTGCTTGAACACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCATTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_megasperma_VHS17183 ATAATTGGTGTGCAGTGCCGCTTCTCCTCTTCCGTGAGCGCTGCGCCGTACAAAATCTGAAAGCAAGCAAATGAAACAGAATTAG------------CGACGCCGGACTC-AACACGGACACGG-ACTGTGGACGCACCTTCATCTGCTTGAAGACCGTACTTTTGCCTGACTCGCCTGCTCCTAGCAAAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCATTATCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_megasperma_DDS3432 ATAATTGGTGTGCAGTGCCGCTTCTCCTCTTCCGTGAGCGCTGCGCCGTACAAAATCTGAAAGCAAGCAAATGAAACAGAATTAG------------CGACGCCGGACTC-AACACGGACACGG-ACTGTGGACGCACCTTCATCTGCTTGAAGACCGTACTTTTGCCTGACTCGCCTGCTCCTAGCAAAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCATTATCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_pgchlamydo_DDS3753 ATAATTGGTGTGCAGTGCCGCTTCTCCTCTTCCGTTAGCGCTGCGCCGTACAAAATCTGAAAGCAACAACATGAAACGGAATTAGTTT-TCCGGGAGCGACGCCAGACTC-AACACGGACACGG-ACTGTAGACACACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCATTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_pgchlamydo_VHS6595 ATAATTGGTGTGCAGTGCCGCTTCTCCTCTTCCGTTAGCGCTGCGCCGTACAAAATCTGAAAGCAACAACATGAAACGGAATTAGTTT-TCCGGGAGCGACGCCAGACTC-AACACGGACACGG-ACTGTAGACACACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCATTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_pgchlamydo_SLPA121 ATAATTGGTGTGCAGTGCCGCTTCTCCTCTTCCGTTAGCGCTGCGCCGTACAAAATCTGAAAGCAAGAACATGAAACGGAATTAGTTT-TCCAGGAGCGACGCCGGACTC-AACACGGACACGG-ACTGTAGACACACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCATTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_hybrid_MUCC774_PG ATAATTGGTGTGCAGTGCCGCTTCTCCTCTTCCGTTAGCGCTGCGCCGTACAAAATCTGAAAGCAAGAACATGAAACGGAATTAGTTT-TCCAGGAGCGACGCCGGACTC-AACACGGACACGG-ACTGTAGACACACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCATTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_hybrid_MUCC777_PG ATAATTGGTGTGCAGTGCCGCTTCTCCTCTTCCGTTAGCGCTGCGCCGTACAAAATCTGAAAGCAAGAACATGAAACGGAATTAGTTT-TCCAGGAGCGACGCCGGACTC-AACACGGACACGG-ACTGTAGACACACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCATTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_hybrid_MUCC778_PG ATAATTGGTGTGCAGTGCCGCTTCTCCTCTTCCGTTAGCGCTGCGCCGTACAAAATCTGAAAGCAAGAACATGAAACGGAATTAGTTT-TCCAGGAGCGACGCCGGACTC-AACACGGACACGG-ACTGTAGACACACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCATTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_hybrid_MUCC779_PG ATAATTGGTGTGCAGTGCCGCTTCTCCTCTTCCGTTAGCGCTGCGCCGTACAAAATCTGAAAGCAAGAACATGAAACGGAATTAGTTT-TCCAGGAGCGACGCCGGACTC-AACACGGACACGG-ACTGTAGACACACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCATTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_hybrid_MUCC783_PG ATAATTGGTGTGCAGTGCCGCTTCTCCTCTTCCGTTAGCGCTGCGCCGTACAAAATCCGAAAGCAAGAACATGAAACGGAATTAGTTT-TCCAGGAGCGACGCCGGACTC-AACACGGACACGG-ACTGTAGACACACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCATTGCCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_hybrid_MUCC784_PG ATAATTGGTGTGCAGTGCCGCTTCTCCTCTTCCGTTAGCGCTGCGCCGTACAAAATCCGAAAGCAAGAACATGAAACGGAATTAGTTT-TCCAGGAGCGACGCCGGACTC-AACACGGACACGG-ACTGTAGACACACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCATTGCCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_hybrid_CMW37727_PG ATAATTGGTGTGCAGTGCCGCTTCTCCTCTTCCGTTAGCGCTGCGCCGTACAAAATCTGAAAGCAAGAACATGAAACGGAATTAGTTT-TCCAGGAGCGACGCCGGACTC-AACACGGACACGG-ACTGTAGACACACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCATTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_hybrid_CMW37729_PG ATAATTGGTGTGCAGTGCCGCTTCTCCTCTTCCGTTAGCGCTGCGCCGTACAAAATCTGAAAGCAAGAACATGAAACGGAATTAGTTT-TCCAGGAGCGACGCCGGACTC-AACACGGACACGG-ACTGTAGACACACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCATTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_hybrid_CMW37730_PG ATAATTGGTGTGCAGTGCCGCTTCTCCTCTTCCGTTAGCGCTGCGCCGTACAAAATCTGAAAGCAAGAACATGAAACGGAATTAGTTT-TCCAGGAGCGACGCCGGACTC-AACACGGACACGG-ACTGTAGACACACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCATTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_thermophila_VHS7474 ATAATTGGTGTGCAGTGCCGCTTCTCCTCCTCAGTTAGCGCTGCGCCGTACAGAATCTGAAGG-ACGAACATGAAACCAAGTTAGTTT-TCCAGGAGCGACGCCGAACGC-AACACGGACACGGGACTGTGGACGCACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCAGTGTCAGTCATCTGGGACGCACAGAGTCCA Phytophthora_thermophila_VHS13530 ATAATTGGTGTGCAGTGCCGCTTCTCCTCCTCAGTTAGCGCTGCGCCGTACAGAATCTGAAGG-ACGAACATGAAACCAAGTTAGTTT-TCCAGGAGCGACGCCGAACGC-AACACGGACACGGGACTGTGGACGCACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCAGTGTCAGTCATCTGGGACGCACAGAGTCCA Phytophthora_hybrid_MUCC780_T ATAATTGGTGTGCAGTGCCGCTTCTCCTCCTCAGTTAGCGCTGCGCCGTACAGAATCTGAAGG-ACGAACATGAAACCAAGTTAGTTT-TCCAGGAGCGACGCCGAACGC-AACACGGACACGGGACTGTGGACGCACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCAGTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_hybrid_MUCC781_T ATAATTGGTGTGCAGTGCCGCTTCTCCTCCTCAGTTAGCGCTGCGCCGTACAGAATCTGAAGG-ACGAACATGAAACCAAGTTAGTTT-TCCAGGAGCGACGCCGAACGC-AACACGGACACGGGACTGTGGACGCACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCAGTGTCAGTCATCTGGGACGCACAGAGTCCA Phytophthora_hybrid_MUCC782_T ATAATTGGTGTGCAGTGCCGCTTCTCCTCCTCAGTTAGCGCTGCGCCGTACAGAATCTGAAGG-ACGAACATGAAACCAAGTTAGTTT-TCCAGGAGCGACGCCGTACGC-AACACGGACACGG-ACTGTGGACGCACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCAGTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_hybrid_MUCC783_T ATAATTGGTGTGCAGTGCCGCTTCTCCTCCTCAGTTAGCGCTGCGCCGTACAGAATCTGAAGG-ACGAACATGAAACCAAGTTAGTTT-TCCAGGAGCGACGCCGAACGC-AACACGGACACGGGACTGTGGACGCACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCAGTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_hybrid_MUCC784_T ATAATTGGTGTGCAGTGCCGCTTCTCCTCCTCAGTTAGCGCTGCGCCGTACAGAATCTGAAGG-ACGAACATGAAACCAAGTTAGTTT-TCCAGGAGCGACGCCGAACGC-AACACGGACACGGGACTGTGGACGCACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCAGTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_hybrid_CMW37731_T ATAATTGGTGTGCAGTGCCGCTTCTCCTCCTCAGTTAGCGCTGCGCCGTACAGAATCTGAAGG-ACGAACATGAAACCAAGTTAGTTT-TCCAGGAGCGACGCCGAACGC-AACACGGACACGGGACTGTGGACGCACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCAGTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_hybrid_CMW37732_T ATAATTGGTGTGCAGTGCCGCTTCTCCTCCTCAGTTAGCGCTGCGCCGTACAGAATCTGAAGG-ACGAACATGAAACCAAGTTAGTTT-TCCAGGAGCGACGCCGAACGC-AACACGGACACGGGACTGTGGACGCACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCGGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCAGTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_hybrid_CMW37733_T ATAATTGGTGTGCAGTGCCGCTTCTCCTCCTCAGTTAGCGCTGCGCCGTACAGAATCTGAAGG-ACGAACATGAAACCAAGTTAGTTT-TCCAGGAGCGACGCCGAACGC-AACACGGACACGGGACTGTGGACGCACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCAGTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_hybrid_CMW37734_T ATAATTGGTGTGCAGTGCCGCTTCTCCTCCTCAGTTAGCGCTGCGCCGTACAGAATCTGAAGG-ACGAACATGAAACCAAGTTAGTTT-TCCAGGAGCGACGCCGAACGC-AACACGGACACGGGACTGTGGACGCACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCAGTGTCAGTCATCTGGGACGCACAGAGTCCA Phytophthora_hybrid_VHS5185_T ATAATTGGTGTGCAGTGCCGCTTCTCCTCCTCAGTTAGCGCTGCGCCGTACAGAATCTGAAGG-ACGAACATGAAACCAAGTTAGTTT-TCCAGGAGCGACGCCGTACGC-AACACGGACACGG-ACTGTGGACGCACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCAGTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_hybrid_VHS22715_T ATAATTGGTGTGCAGTGCCGCTTCTCCTCCTCAGTTAGCGCTGCGCCGTACAGAATCTGAAGG-ACGAACATGAAACCAAGTTAGTTT-TCCAGGAGCGACGCCGTACGC-AACACGGACACGG-ACTGTGGACGCACCTTCATCTGCTTGAAGACCGTACTCTTGCCTGACTCGCCTGCTCCTAGCAGAAGCAGCTTGACCTTCTCCTGCTCCACGCGGTGGGCCTCCTCGTTCTTGGCTTCGATCTCGCGCGACTTGGCCATCGCCACCCGATCAGTGTCGGTCATCTGGGACGCACAGAGTCCA Phytophthora_fragariae_PFF309_DQ092858 ATAATTGGTGTGCAGTGCCGCTTCTCCTCATCTGTTAGCGGGGCGCCATACAAAATCTGCAGCGCCAAACAAAACCCAAAATTAGT----CCTCG--CAACTCCTACCGCGAACAAGTCAACGT--CCG---ACGCACCTTCATCTGTTTGAAGACCGTACTCTTGCCTGACTCGCCAGCTCCCAGCAGCAGCAACTTGACCTTCTCCTGCTCCACGCGGTGAGCCTCCTCGTTCTTGGCTTCAATCTCGCGCGACTTGGCCATGGCCTGTCGATCGGTATCGGTCATCTGGGACGCACAGAGTCC- ; END; BEGIN TREES; Title GPA1_MP_bootstrap_consensus; LINK Taxa = Taxa; TRANSLATE 1 Phytophthora_hybrid_MUCC777_A, 2 Phytophthora_fluvialis_CBS129424, 3 Phytophthora_fluvialis_MUCC772, 4 Phytophthora_gonapodyides_MUCC776, 5 Phytophthora_gonapodyides_MUCC761, 6 Phytophthora_litoralis_VHS20763, 7 Phytophthora_litoralis_VHS17085, 8 Phytophthora_megasperma_VHS17183, 9 Phytophthora_megasperma_DDS3432, 10 Phytophthora_pgchlamydo_DDS3753, 11 Phytophthora_pgchlamydo_VHS6595, 12 Phytophthora_pgchlamydo_SLPA121, 13 Phytophthora_hybrid_MUCC774_PG, 14 Phytophthora_hybrid_MUCC777_PG, 15 Phytophthora_hybrid_MUCC778_PG, 16 Phytophthora_hybrid_MUCC779_PG, 17 Phytophthora_hybrid_MUCC783_PG, 18 Phytophthora_hybrid_MUCC784_PG, 19 Phytophthora_hybrid_CMW37727_PG, 20 Phytophthora_hybrid_CMW37729_PG, 21 Phytophthora_hybrid_CMW37730_PG, 22 Phytophthora_thermophila_VHS7474, 23 Phytophthora_thermophila_VHS13530, 24 Phytophthora_hybrid_MUCC780_T, 25 Phytophthora_hybrid_MUCC781_T, 26 Phytophthora_hybrid_MUCC782_T, 27 Phytophthora_hybrid_MUCC783_T, 28 Phytophthora_hybrid_MUCC784_T, 29 Phytophthora_hybrid_CMW37731_T, 30 Phytophthora_hybrid_CMW37732_T, 31 Phytophthora_hybrid_CMW37733_T, 32 Phytophthora_hybrid_CMW37734_T, 33 Phytophthora_hybrid_VHS5185_T, 34 Phytophthora_hybrid_VHS22715_T, 35 Phytophthora_fragariae_PFF309_DQ092858; TREE GPA1_MP_bootstrap_consensus = ((((1:100.0,(2:100.0,3:100.0)100:100.0)58:58.0,(4:100.0,5:100.0)100:100.0,(6:100.0,7:100.0)94:94.0,((10:100.0,11:100.0)92:92.0,12:100.0,13:100.0,14:100.0,15:100.0,16:100.0,(17:100.0,18:100.0)87:87.0,19:100.0,20:100.0,21:100.0)82:82.0,((22:100.0,23:100.0,25:100.0,32:100.0)65:65.0,24:100.0,(26:100.0,33:100.0,34:100.0)68:68.0,27:100.0,28:100.0,29:100.0,30:100.0,31:100.0)91:91.0)57:57.0,(8:100.0,9:100.0)100:100.0)100:100.0,35:0.0)0; END; BEGIN TREES; Title GPA1_MP; LINK Taxa = Taxa; TRANSLATE 1 Phytophthora_hybrid_MUCC777_A, 2 Phytophthora_fluvialis_CBS129424, 3 Phytophthora_fluvialis_MUCC772, 4 Phytophthora_gonapodyides_MUCC776, 5 Phytophthora_gonapodyides_MUCC761, 6 Phytophthora_litoralis_VHS20763, 7 Phytophthora_litoralis_VHS17085, 8 Phytophthora_megasperma_VHS17183, 9 Phytophthora_megasperma_DDS3432, 10 Phytophthora_pgchlamydo_DDS3753, 11 Phytophthora_pgchlamydo_VHS6595, 12 Phytophthora_pgchlamydo_SLPA121, 13 Phytophthora_hybrid_MUCC774_PG, 14 Phytophthora_hybrid_MUCC777_PG, 15 Phytophthora_hybrid_MUCC778_PG, 16 Phytophthora_hybrid_MUCC779_PG, 17 Phytophthora_hybrid_MUCC783_PG, 18 Phytophthora_hybrid_MUCC784_PG, 19 Phytophthora_hybrid_CMW37727_PG, 20 Phytophthora_hybrid_CMW37729_PG, 21 Phytophthora_hybrid_CMW37730_PG, 22 Phytophthora_thermophila_VHS7474, 23 Phytophthora_thermophila_VHS13530, 24 Phytophthora_hybrid_MUCC780_T, 25 Phytophthora_hybrid_MUCC781_T, 26 Phytophthora_hybrid_MUCC782_T, 27 Phytophthora_hybrid_MUCC783_T, 28 Phytophthora_hybrid_MUCC784_T, 29 Phytophthora_hybrid_CMW37731_T, 30 Phytophthora_hybrid_CMW37732_T, 31 Phytophthora_hybrid_CMW37733_T, 32 Phytophthora_hybrid_CMW37734_T, 33 Phytophthora_hybrid_VHS5185_T, 34 Phytophthora_hybrid_VHS22715_T, 35 Phytophthora_fragariae_PFF309_DQ092858; TREE GPA1_MP_1 = (((((((1:3.0,(2:0.0,3:0.0):22.0):3.0,((22:0.0,23:0.0,25:0.0,32:0.0):1.0,24:0.0,(26:0.0,33:0.0,34:0.0):2.0,27:0.0,28:0.0,29:0.0,30:0.0,31:0.0):7.0):2.0,(6:0.0,7:0.0):3.0):3.0,((10:0.0,11:0.0):3.0,12:0.0,13:0.0,14:0.0,15:0.0,16:0.0,(17:0.0,18:0.0):2.0,19:0.0,20:0.0,21:0.0):3.0):3.0,(4:0.0,5:0.0):26.0):7.0,(8:0.0,9:0.0):10.0):13.0,35:18.0):0.0; TREE GPA1_MP_2 = (((((((1:3.0,(2:0.0,3:0.0):22.0):3.0,((22:0.0,23:0.0,25:0.0,32:0.0):1.0,24:0.0,(26:0.0,33:0.0,34:0.0):2.0,27:0.0,28:0.0,29:0.0,30:0.0,31:0.0):7.0):2.0,(6:0.0,7:0.0):3.0):3.0,((10:0.0,11:0.0):3.0,(12:0.0,13:0.0,14:0.0,15:0.0,16:0.0,(17:0.0,18:0.0):2.0,19:0.0,20:0.0,21:0.0):0.0):3.0):3.0,(4:0.0,5:0.0):26.0):7.0,(8:0.0,9:0.0):10.0):13.0,35:18.0):0.0; TREE GPA1_MP_3 = (((((((1:3.0,(2:0.0,3:0.0):22.0):3.0,(((22:0.0,23:0.0,25:0.0,32:0.0):1.0,24:0.0,27:0.0,28:0.0,29:0.0,30:0.0,31:0.0):0.0,(26:0.0,33:0.0,34:0.0):2.0):7.0):2.0,(6:0.0,7:0.0):3.0):3.0,((10:0.0,11:0.0):3.0,12:0.0,13:0.0,14:0.0,15:0.0,16:0.0,(17:0.0,18:0.0):2.0,19:0.0,20:0.0,21:0.0):3.0):3.0,(4:0.0,5:0.0):26.0):7.0,(8:0.0,9:0.0):10.0):13.0,35:18.0):0.0; TREE GPA1_MP_4 = (((((((1:3.0,(2:0.0,3:0.0):22.0):3.0,(((22:0.0,23:0.0,25:0.0,32:0.0):1.0,24:0.0,27:0.0,28:0.0,29:0.0,30:0.0,31:0.0):0.0,(26:0.0,33:0.0,34:0.0):2.0):7.0):2.0,(6:0.0,7:0.0):3.0):3.0,((10:0.0,11:0.0):3.0,(12:0.0,13:0.0,14:0.0,15:0.0,16:0.0,(17:0.0,18:0.0):2.0,19:0.0,20:0.0,21:0.0):0.0):3.0):3.0,(4:0.0,5:0.0):26.0):7.0,(8:0.0,9:0.0):10.0):13.0,35:18.0):0.0; END; BEGIN TREES; Title GPA1_Bayesian_inference; LINK Taxa = Taxa; TRANSLATE 1 Phytophthora_hybrid_MUCC777_A, 2 Phytophthora_fluvialis_CBS129424, 3 Phytophthora_fluvialis_MUCC772, 4 Phytophthora_gonapodyides_MUCC776, 5 Phytophthora_gonapodyides_MUCC761, 6 Phytophthora_litoralis_VHS20763, 7 Phytophthora_litoralis_VHS17085, 8 Phytophthora_megasperma_VHS17183, 9 Phytophthora_megasperma_DDS3432, 10 Phytophthora_pgchlamydo_DDS3753, 11 Phytophthora_pgchlamydo_VHS6595, 12 Phytophthora_pgchlamydo_SLPA121, 13 Phytophthora_hybrid_MUCC774_PG, 14 Phytophthora_hybrid_MUCC777_PG, 15 Phytophthora_hybrid_MUCC778_PG, 16 Phytophthora_hybrid_MUCC779_PG, 17 Phytophthora_hybrid_MUCC783_PG, 18 Phytophthora_hybrid_MUCC784_PG, 19 Phytophthora_hybrid_CMW37727_PG, 20 Phytophthora_hybrid_CMW37729_PG, 21 Phytophthora_hybrid_CMW37730_PG, 22 Phytophthora_thermophila_VHS7474, 23 Phytophthora_thermophila_VHS13530, 24 Phytophthora_hybrid_MUCC780_T, 25 Phytophthora_hybrid_MUCC781_T, 26 Phytophthora_hybrid_MUCC782_T, 27 Phytophthora_hybrid_MUCC783_T, 28 Phytophthora_hybrid_MUCC784_T, 29 Phytophthora_hybrid_CMW37731_T, 30 Phytophthora_hybrid_CMW37732_T, 31 Phytophthora_hybrid_CMW37733_T, 32 Phytophthora_hybrid_CMW37734_T, 33 Phytophthora_hybrid_VHS5185_T, 34 Phytophthora_hybrid_VHS22715_T, 35 Phytophthora_fragariae_PFF309_DQ092858; TREE GPA1_Bayesian_inference = (35:1.594035,24:0.026646,27:0.026731,28:0.02675,29:0.026509,30:0.054193,31:0.026952,((1:0.198921,(2:0.026704,3:0.028292)1.00:0.348671)1.00:0.122756,((((4:0.031227,5:0.059225)1.00:0.48226,(8:0.029352,9:0.029486)1.00:0.227732)0.71:0.089308,((10:0.028277,11:0.02705)1.00:0.109995,12:0.027842,13:0.027211,14:0.027856,15:0.027383,16:0.027167,(17:0.026904,18:0.027389)1.00:0.083203,19:0.02701,20:0.026842,21:0.027912)0.95:0.096431)0.97:0.10136,(6:0.026893,7:0.026727)1.00:0.113014)0.90:0.064789)1.00:0.235975,(26:0.027125,33:0.027672,34:0.027429)0.91:0.054941,(22:0.027327,23:0.026677,25:0.026866,32:0.026469)0.83:0.053055); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 307; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 307; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 307; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1342069641252; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 224738001088859885; tell It; setSelected 14; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2742080965988380154; mqVersion 275; checksumv 0 3 2952793709 null getNumChars 307 numChars 307 getNumTaxa 35 numTaxa 35 short true bits 15 states 15 sumSquaresStatesOnly 214334.0 sumSquares 214334.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1280 550; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #2742080965988380154 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 256; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -67; setLocation -8 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;