NEXUS
[File created by TreeBASE:  1/16/09  15:35:47]
[Matrix accession#: M3921]

BEGIN TAXA;
	TITLE M3921;
	DIMENSIONS  NTAX=12;
	TAXLABELS
		Exobasidium_japonicum	Exobasidium_oxycocci	Graphiola_cylindrica	Graphiola_sp	Meira_argovae_OM1	Meira_argovae	Meira_geulakinigii	Meira_nashicola	Kordyana_celebensis	Kordyana_tradescantiae	Dicellomyces_gloeosporus	Dicellomyces_scirpi
	;
END;

BEGIN CHARACTERS;
	TITLE M3921;
	DIMENSIONS NCHAR=655;
	FORMAT DATATYPE = DNA MISSING = ? GAP = - ;
	MATRIX
		Exobasidium_japonicum          TAACAAGGATTCCCCTAGTAACGGCGAGTGAAGCGGGATGAGCTCAAATTTGAAAGCTGGCAGT-------AATGTCCGCATTGTAATCTCGAGAGATGTTTTCCGCGTTGGACCACGTACAAGTTCCTTGGAATAGGATGTCATAGAGGGTGAAAATCCCGTACTTGATGTGGACGCCCAGTGCTTTGTGATACGTCTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTCAAAAGGGAAGCATTTGAAGTCAGACGTG-TATTT---CAGTATT----CAGCCTTGCTTTT-----GCTTGGT----GTATTTGCTGT----------CGT-ACAGGCCAACATCAGTTTTG--AGTGACGGATAAGGGTAGAGAGAATGTGGCACC---TTCGGG---TGTGTT-ATAGCTCTTTACTGGATACGTCGTTTGGGACTGAGGAA--CGCAGCGCGCC-GTAA----GGCAGACCCTCGGGTACTTTC-GCGCTTAGGATGTTGGCGTTAATGGCTTTAAGTGACCCGTCTTGA
		Exobasidium_oxycocci           TAACAAGGATTCCCCTAGTAACGGCGAGTGAAGCGGGATGAGCTCAAATTTGAAAGCTGGCAGT-------AATGTCCGCGTTGTAATCTCGAGAGTTGTTTTCCGCGCTGGACCACGTACAAGTTCCTTGGAATAGGATGTCATAGAGGGTGAAAATCCCGTACTTGATGTGGACGCCCAGTGCTTTGTGATACATCATCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTCAAAAGGGAAGCATTTGAAGTCAGACGTG-TATTT---CAGTATT----CAGCCTTGCTTTTT---TGCTTGGT----GTATTTGCTGT----------TTTTACAGGCCAACATCAGTTTTG--AGTGACGGATAAGGGTAGAAAGAATGTAGCACC---TTTGGG---TGTGTT-ATAGCTTTTTACTGGATACGTCGTTTGGGACTGAGGAA--CGCAGCGCGCC-GTAA----GGCAGACCTTCGGGTACTTTC-GCGCTTAGGATGTGGGCGT-AATGGCTTTAAGTGACCCGTCTTGA
		Graphiola_cylindrica           TAACAAGGATTCCCTTAGTAACGGCGAGTGAAGCGGGAAGAGCTCAAATTTGAAAGCTGGCCGC-------AAGGTCCGCATTGTAATCTCGAGAAGTGTTTTCCGCGCTGGACCATGGACAAGTTCCCTGGAATGGGATGTCATAGAGGGTGATAACCCCGTACTTGCTGTGGACGCCCAGTGCTTTGTGATACACTTTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGGGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTCAAAAGGGAAGCACTGGAAGTCAGACGTG-CATG----CAGTATT----CAGCCTGGCTTCG-----GCTTGGT----GTATTTATTGT----------TTT-GCAGGCCAACATCGATTTTC--GGCAACGGATAAGGGTATAGGGAATGTGGCCTC---TCCGGA---GGTGTT-ATAGCCCTGTACTGGATACGTTGCTGGGGATCGAGGAT--CGCAGCGCCCCCGCAA---GGGCAGGCCTTCGGGCACTTTG-GCGCTTAGGATGTTGGCGT-AATGGCTTTCAGTGACCCGTCTTGA
		Graphiola_sp                   TAACAAGGATTCCCCTAGTAACGGCGAGTGAAGCGGGAAGAGCTCAAATTTGAAAGCTGGCAGC-------AATGTCCGCGTTGTAATCTCGAGACGTGTTTTCCGTGCTGGACCGTGGACAAGTTTCCTGGAATGGAATGTCATAGAGGGTGAAAACCCCGTACTTGCCGCGGACGCCCAGTGCTTTGTGATGCGCGTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGGGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTCAAAAGGGAAGCATTGGAAGTCAGACGTG-CATG----CAGTACT----CAGCCTGGCTTTG-----GCTTGGT----GTATTTGCTGT----------TTT-GCAGGCCAACATCGATTTTT--GGCAACGGATAAGGGTAGAGAGAATGTGGCCTC---CCCGGA---GGTGTT-ATAGCTCTCTACTGGATACGTTGCCGGGGATCGAGGAA--CGCAGCGTCCCCGCAA---GGGCAGGTCTTCGGACACTTTG-ACGCTTAGGATGTTGGCGT-AATGGCTTTCAATGACCCGTCTTGA
		Meira_argovae_OM1              TAACAAGGATTCCCTTAGTAACGGCGAGTGAAGCGGGAATAGCTCAAATTTGAAAGCTGGCAGC-------AATGTCCGCGTTGTAATCTCGAGAAGTGTTTTCCGTGCTGGACCATAGATATGTTCCTTGGAATAGGATGTCAAAGAGGGTGAGAATCCCGTACATGCTATGGACGCCCAGTGCTTTGTGATACACTTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGGGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTCAAAAGGGAAGCGCTTCAAGTCAGATATGGCTTT----AAATGTT----CAGCCT-------------TTCGGT----GTATTCATTTT----------TTG-TCAGGCCAGCATCGATTTTG--AACGTCGGATAAGGGTAGAAGGAATGTAGCAT-ACTTTCGGGTA-TGTGTT-ATAGCCTTTTACTGGATACGACGATCGGGATCGAGGTT--CGCAGCACACCCTTTTT--GGGCAGGTCTTCGGACACTTTT-GTGCTTAGGATGCTGGCGT-AATGGCTTGAAGCGACCCGTCTTGA
		Meira_argovae                  TAACAAGGATTCCCTTAGTAACGGCGAGTGAAGCGGGAATAGCTCAAATTTGAAAGCTGGCAGC-------AATGTCCGCGTTGTAATCTCGAGAAGTGTTTTCCGTGCTGGACCATAGATATGTTCCTTGGAATAGGATGTCAAAGAGGGTGAGAATCCCGTACATGCTATGGACGCCCAGTGCTTTGTGATACACTTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGGGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTCAAAAGGGAAGCGCTTCAAGTCAGATATGGCTTT----GAATGTT----CAGCCT-------------TTAGGT----GTATTCATTTT----------TTG-TCAGGCCAGCATCGATTTTG--AACGTCGGATAAGGGTAGAAGGAATGTAGCAT-ACTTTCGGGTA-TGTGTT-ATAGCCTTTTACTGGATACGACGATCGGGATCGAGGTT--CGCAGCACACCCTTTTTT-GGGCAGGTCTTCGGACACTTTT-GTGCTTAGGATGCTGGCGT-AATGGCTTGAAGCGACCCGTCTTGA
		Meira_geulakinigii             TAACAAGGATTCCCTTAGTAACGGCGAGTGAAGCGGGAATAGCTCAAATTTGAAAGCTGGCAGC-------AATGTCCGCGTTGTAATCTCGAGAAGTGTTTTCCGTGCTGGACCATAGATATGTTCCTTGGAATAGGATGTCATAGAGGGTGAGAACCCCGTACATGCTATGGACGCCCAGTGCTTTGTGATACACTTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGGGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTCAAAAGGGAAGCGCTTCAAGTCAGATATGGCTTT----GAATGTT----CAGCCT-------------TTAGGT----GTATTCATTTT----------TTG-TCAGGCCAGCATCGATTTTG--GACGTCGGATAAGGGTAGAAGGAACGTGGCAT-ACTTTCGGGTA-TGTGTT-ATAGCCTTTTACTGGATACGACGATCGGGATCGAGGTT--CGCAGCACACCCTTTTT--GGGCAGGTCTTCGGACACTTTT-GTGCTTAGGATGCTGGCGT-AATGGCTTGAAGCGACCCGTCTTGA
		Meira_nashicola                TAACAAGGATTCCCTTAGTAACGGCGAGTGAAGCGGGAATAGCTCAAATTTGAAAGCTGGCAGC-------AATGTCCGCGTTGTAATCTAGAGAAGTGTTTTCCGTGCTGGACCATAGATATGTTCCTTGGAATAGGATGTCATAGAGGGTGAGAACCCCGTACATGCTATGGACGCCCAGTGCTTTGTGATACACTTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGGGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTCAAAAGGGAAGCGCTTCAAGTCAGATATGGCTTT----GAATGTT----CAGCCT-------------TTAGGT----GTATTCATTTT----------TTG-TCAGGCCAGCATCGATTTTG--AACGTCGGATAAGGGTAGAAAGAACGTAGCAT-ACTCTCGGGTA-TGTGTT-ATAGCTTTTTACTGGATACGACGATCGGGATCGAGGTT--CGCAGCACACCCTTTTTT-GGGCAGGTCTTCGGACACTTTTTGTGCTTAGGATGCTGGCGT-AATGGCTTGAAGCCAC---------
		Kordyana_celebensis            CTACAAGGATTCCCCTAGTAACGGCGAGTGAAGCGGGAAAAGCTCAAATTTGAAAGCTTACAGT-------AATGTACGCGTTGTAATCTCGAGAAATGTTTTCCGTGCTGGACCATGGACAAGTTCCTTGGAATAGGATGTCATAGAGGGTGAGAACCCCGTCTTTGCCATGGACGCCCAGCGCTTTGCGATACATTTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGGGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTCAAAAGGGAAGCGCTTCAAGTCAGACGTGTAGCG----CGGTACT----CAGCCT-------------TATGGT----GTTTTTACCGC----------ATT-ACTGGCCAGCATCGATTTTG--AGCGACGGAGAAGGGTGTGAGGAACGTGGCACC---TCCGGG---TGTGTT-ATAGCCTTACACTGGATACGTCGCTTGGGATCGAGGAA--CGCAGCGCACCCGCAA---GGGCAGGTCTTCGGACACTTTT-GCGCTTAGGATGCTGGCGT-A------------------------
		Kordyana_tradescantiae         -------GATTCCCCTAGTAACGGCGAGTGAAGCGGGATGAGCTCAAATTTGAAAGCTTGCAGC-------AATGCACGCGTTGTAATCTCGAGAAATGTTTTCCGTGCTGGWCCATGGACAAGTTCCTTGGAATAGGATGTCATAGAGGGTGAGAACCCCGTCTTTGCCATGGACGCCCAGTGCTTTGTGATACATTTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGGGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTCAAAAGGGAAGCGCTTCAAGTCAGACGTGTAGTG----CGGTACT----CAGCCT-------------TACGGC----GTTTTTACCGT----------TTT-ACTAGCCAGCATCGATTTTG--AGCAACGGATAAGGGTGTGGGGAACGTGGCACC---TC-GGG---TGTGTT-ATAGMCTTACACTGGATACGTCGCTTGGGATCGAGGAA--CGCAGTGCACCCGCAA---GGGCAGGTCTTCGGACACTCT-----------------------------------------------
		Dicellomyces_gloeosporus       TAACGAGGATTCCCCTAGTAACGGCGAGTGAAGAGGGAAAAGCTCAAATTTGAAAGCTTGTCCTTTTTTCGGGGGCACGCATTGTAATCTCGAGATGTGTTTTCCGTGTTGGCTTACGGACAATGTCCTTGGAATAGGAAATCATAGAGGGTGACAACCCCGTCTTTGCCGTAAACATCCAATGCTTTGTGATACACAATCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGAGGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTCAAAAGGGAAGCGCTTCACGTAATAAGTATTTTTATG-GAGCATTATGGCGGTGTATTCTTCGGAATGCTAAGTAAGAGTTTCTCTCCTGCCGCTCCTATTTTACTGGTCATTGTCGATTCTGTTGCCGACGGATAAGGGTACGAGAAAGGTAGCATTATGTTCGCATAATGTGTTTATAGACTTGTACTGGATACGTTGGTCGGGATCGAGGATAACGCAGGGAACCCTTCG---GGGCTGGCTTTCGAGCACATTT-TCCCTAAGGACAACGACTTCAATTGCGTGAAGCGACCCGTCTTGA
		Dicellomyces_scirpi            --------------CTAGTAACGGCGAGTGAAGCGGGATGAGCTCAAATTTGAAAGCTGGCC-TTT-------GGTCCGCATTGTAATCTCGAGATGTGTTTTCCGTGCTAGACCGTGGACAAGTTCCTTGGAATTGGATGTCATAGAGGGTGAGAACCCCGTACATGCCGCGGATGCCTAGTGCTTTGTGATACACGTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAGTGGGTGGTAAATTCCATCTAAAGCTAAATATTGGGGAGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTCAAAAGGGAAGCGCTTCAAGT--TAGATGTGT-------------GTAGTGGTGC-----TCAGCCG-C-AAGGC---GTTTTCAT--TGC------TAC---ACAGGCCAACATCGGTTGTA--GGGGGTGGAGAATAGGCGGAGGAATGTGGCACC---TCCGGG---TGCGTT-ATAGCCTCTGCCCGGATACATCCCCCACGACCGAGGTCAGCA-----------------------GCGTTCG----CGCTT-------AGGATGCTG---------GCGT-AA------TGGCTTGA
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 655 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;