#NEXUS [written Tue Jul 10 10:33:50 EDT 2012 by Mesquite version 2.75 (build 564) at Robert-Baratheons-MacBook.local/10.0.1.136] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=33; TAXLABELS Dromaeosauridae Archaeopteryx Zhongornis Jeholornis Sapeornis Confuciusornis Changchengornis Longipteryx Eoenantiornis Concornis Longirostravis Eoalulavis Gobipteryx Neuquenornis Vescornis Iberomesornis DNHM_D1878 Apsaravis Hongshanornis Yanornis Icthyornis Hesperornis Patagopteryx Yixianornis Gansus Anas Gallus Qiliania Soravisaurus CAGS_07_001 CAGS_06_012 CAGS_05_004 Archaeorhynchus ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=242; FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1 2 3 4 5 6"; MATRIX Dromaeosauridae 00000000000000000000000000000000000000??00000000000000000000000000000000001????10000000000000?10000000000000?(0 1)??00000000000000100000000000000100000000??000?00000000000000000000000(0 1)00001?0000000010000(0 1)0000000000000000000000000000000(0 1)0000000000 Archaeopteryx 000000000000000?0010010?00?000??0?000???0000000?1000?100000??00000?00020001????00000000000000?0000?0?000000????????????000?0001100000000000???00000000??000?00001000000000000002000000001?1?0001?010000?1000000?000?0??0??00000000000000?0?0?00100 Zhongornis ???2???1?????????????????0????????1?????????????????????001??0??(0 1)????1(3 4)0?1??????01????00000???000????00?0?(0 1)??????????????0000?0100????0000????00??????????0000?0100?000000000001?00??????????1?1??????????(0 2)0(0 1)??00?0?0??0??1?00?0?000000??0(1 2)0?011?? Jeholornis ??22?111????????????0?????????????00?????000?00?1??0????001?1000?????010000?????01101?000001??010?????10000??0??????????00??000100?0?00??00001110?000001210?00?000100000000000130000?00?1?11?101?010010???0???0?000?0?10??1100000000??00?020?011?0 Sapeornis 10100010(0 1)?0??????0010?1?0?????????1?0????00??0??1????100(0 1)00??10010?0024000000?00000011000000??000000??10002?????????????00??0001100000???0000111????00??21000001000?0000000001230000??0???111101111?010010?0100?100?0?111?11000000000000?000?011?? Confuciusornis 1022?1111?0?????00010110000120???11?1121010?1100?101?101(0 1)01112001000024000?000010100?0?0000???0000000000000(1 2)011?011210000000000210?000001010000100210001210?000?100?000000011002000000001??10101111001010110101?1?010000?111000010001?210000001100 Changchengornis 1?22?1111?0????????1??????0???????1?11??0?0??100???(1 2)?????????2??1???024??0?0000?0100?0?000????000000?0?00001?1??01??10?0?0????02??????????????01?????0????0?0000?0??000000011002???0?????????????(1 2)???1???????????0????????110000?0?0??2??010?011?0 Longipteryx ?1201111??????????11?11??0????????000????00??01?1??1011?????????(1 2 3)????24??0201?110111110100????000?000?11112(1 2 3)?211????20??01?00?000?????0??11???11????100?01000000100?0110010001130000????1?1111011(1 2)11010?0????0??00????1?1?100?1000000001?120?011?? Eoenantiornis (0 1)02001?0(0 1)?0?????????????1?????????00?????0??????1???????????????0????240202?1??10111110101111000??00???1112(1 2 3)?(1 2)??110?2000????1?000?????????????11?????10?31??0000?00?011001000122???0?????????????(1 2)??0(1 2)0???1?????1??????????10010010??????0?1001??? Concornis ????????????????????????????????????????????????????1????01??11????????0?01????0?111110101?11?00?1?????111231211110?20?00110??010211?0????1???1111(1 2)????????????0??0???20010?0122????????????10?11(1 2)??01?1????????110???????1100?0?00??00??000?012?? Longirostravis (0 1)0201??1??????????????????????????00?????00??01?1??1?????0?????01????240?0?01?1001111?0?00?20?0001?0??111?(2 3)(1 2 3)?221110?20??01??1?000????????0????10????????310?10?01?0?01?0011?0123??01??????1??1011?11????0???????100?????1?110?10000??0???010?0???? Eoalulavis ???????????????????????????????????????????????????00111200??2?0???????????????0111111010111100000000?111?3210??010?30?00110100002110110011101111?21?1?????????0??1?011001????2???0???????1??????????????11?????????????????????????????????????1? Gobipteryx 20(1 2)2?101200021?10????????0???0?1??1?10???10?1?10??????1??????????00??240????000??1111?010?11100??0000?1?112????????????0??????0?0????0?????????1???111?????????0??0?01?00??????20?????????????????100?1??????????10101011?110010?1000011?0?1?1???? Neuquenornis ?????????????????????????????????????????????????????????0???1???????????????????1111???011111000????1?111130(1 2)?1????????????10010??1?01?1?????10?1??11??31??10?0?(0 1)0001???????????????????????????????????110??1???0?????????0??0?1??1?1?00?11?1(1 2)?? Vescornis ?0?????0??????????????????????????000????00(1 2)001?1??21?1??0???1??0????2??????000?0111?10?01????000000?0011033120011??20??01?0??010211?0???1111111??????1(0 2)?1??10?0??010120010001220??????????????1??????????????1?010????????10??0010??01??121?111?? Iberomesornis ??????????????????????????????????????????????????10111110???0000????2401?101??01111??0?00?2??0????????11?(2 3)(2 3)????????20?????????????1?0???111???1?????????????????????????????????000?????????1?111?????????0????0?0????????00?10010?001??001?011?? DNHM_D1878 (0 1)?(1 2)(0 1)1??1????????????????????????????0????00(1 2)?01??????1???????????????2????????1?0111????000???000?00??111?2(1 2 3)?1111(0 1)??20?????????00????????1????11????1?????????????????10011??122??????????????????1??(1 2)?0???0(0 1)0??1?????????110??00000???1??10?001?1 Apsaravis ????????????????????????????1?????1?1????1????????021?1?201??20?4??0?24?10???????1111100001111111001001????30????1?????11001000101110000111111110121101?311001110110???1????????10001011??1?111012??121101?110??1??20121??111?111001?1?20010?0???? Hongshanornis ?0200?10??????????1????????????????00???101??0???????????????1???????24???????010111110010????011??0?0121?1??2201???10?110?????10????????0????11????????31??00?0??00?01101000101????????????0??01(1 2)???(1 2)1??????????0????????1110?0?00?0?0??020?01111 Yanornis 10(1 2)10110??1????????1?????????????1000???1?00?01?1??0?????01??2003??0????????????01111110100?0?110000??121?0301211(1 2)??41?11001??010110?????0100011?0?11?0?31110010000010110100012310100?111??10100?11?010??1??????1???0??0??111011?00(0 1)??12?010?011?? Icthyornis 21(1 2)????0?????????111111??1111???01001????0021011111(0 1)11012011120?(3 4)?0102401021000??111111010010?1110100012?00310??1?12?011100110010120110?101000110021101?31110111010010?1111????310?010111???1101121?12?10121101?10121110?2111011201?01?2102000???? Hesperornis 1122?1102110210111111111010111?1?10110??100?10101?121001211112004010?23020210001?110?0?010010?0100??000200?1?0??1111000??????0??0??0???????????????????????????????????????????0100011111?011110121012?10121101110121110121110112211013211200001?? Patagopteryx ???????????????????11110001111????????????0??000?11211011001100031101??120???????1111100000?0?01100?0??????(1 2)????10?????1001???1000?0?00000100?0000?0?0?????????0??1????0?00???20?00010001?001110121?021?0?20????100?0?00111110101001110000?0?001?? Yixianornis 11210???????????????????0???1?1???0?0???110?????1??1?1??2011?1003??0?24????1000(1 2)0111110010010?110000001210?311111?0?41??10??11??0?0?0?11001?0?100021?0??3111011100001?1101000102100?1??0??0?01??11??01???12?101?10????????11101??001?10?001??011?1 Gansus ??????????????????????????????????????????????????121?1?201111004001024?202100001111110010020?1100??001210031210100?10?11001??010130?1???010011100111?0?31??01110001?121010001321?0011111?0101011210011001?1101?1012?0?0?211101110010102?0200011?? Anas 2122?011210111111111111111112112111?102100001011?10211012111100060120240202100021111111010020?11000000121003111001133011100111100030111110100001001110123110131111111021011??123110111111?01011112101211011110111012201012111011201301321020001011 Gallus 1122?111211121111111111111112112111?102000001011?10211012111100160120240202100021111111010020?11100000121013110101122011100111100030111111100011001110113110131102101121011??121110112111?01101112101211012110111012201012111011201301322010101011 Qiliania ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????10????001??10101?2?00(1 2)1?0?11100?00010000?11100?001001?11?0?0?01(0 1)?? Soravisaurus ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????11100001???1011001001011(0 1)011111??? CAGS_07_001 ?????????????????????????????????????????????????????????0??????(1 2 3 4)????(1 2)4?00?0????????????????????????????????????????????????????????????????????????????????????????????????????0?0???????11?????(1 2)????????1??0??0??(0 1)??????100?100100101??0111011?0 CAGS_06_012 ?????????????????????????????????????????????????????????0???????????2??????11??????????????????????????????????????????????????????????????????????????????????????????????????????????1??1?????110?(1 2)????1??0??1???0?0???1100?0010??012?020?011?? CAGS_05_004 ?????????????????????????????????????????????????????????01??(0 1)10?0???24???10?1??0????????????????????????????????????????????????????????????????????????????????????????????????0???????????10111??0(1 2)????1??0?????(0 1)??????110??001??1?11?020?011?0 Archaeorhynchus 10120111(1 2)?????????????????????????1?00???0?00??1???0?????0??1???2000??(3 4)0111?????01111?0010?20?010000?0?2100(2 3)1(1 2)??1????????000??010????0???0110?10????101?010?00???0??0?21010???230000??????101100?(1 2)10010?????????0??00????2111010000???(0 1)0?0(0 1)0?0???? ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS; TYPESET * UNTITLED = unord: 2 4 - 8 10 - 28 30 - 31 33 - 43 45 - 51 53 - 56 58 - 64 66 - 67 69 - 72\3 74 76 - 91 93 - 106 108 - 115 117 - 157 159 - 166 168 - 174 176 - 181 183 - 193 195 - 197 199 - 204 206 - 211 214 216 - 217 219 - 227 229 - 231 234 - 242, ord: 1 3 9 29 - 32\3 44 52 57 65 - 68\3 70 - 71 73 75 92 107 116 158 167 175 182 194 198 205 212 - 213 215 - 218\3 228 232 - 233; END; BEGIN TREES; Title Imported_trees; LINK Taxa = Taxa; TRANSLATE 1 Dromaeosauridae, 2 Archaeopteryx, 3 Zhongornis, 4 Jeholornis, 5 Sapeornis, 6 Confuciusornis, 7 Changchengornis, 8 Longipteryx, 9 Eoenantiornis, 10 Concornis, 11 Longirostravis, 12 Eoalulavis, 13 Gobipteryx, 14 Neuquenornis, 15 Vescornis, 16 Iberomesornis, 17 DNHM_D1878, 18 Apsaravis, 19 Hongshanornis, 20 Yanornis, 21 Icthyornis, 22 Hesperornis, 23 Patagopteryx, 24 Yixianornis, 25 Gansus, 26 Anas, 27 Gallus, 28 Qiliania, 29 Soravisaurus, 30 CAGS_07_001, 31 CAGS_06_012, 32 CAGS_05_004, 33 Archaeorhynchus; TREE Imported_tree_0 = (1,(2,(4,(3,((5,(((8,(11,17)),(9,((10,((13,14,15,29),(31,32))),(12,16,28,30)))),(33,(23,(19,((25,(18,(22,(21,(26,27))))),(20,24))))))),(6,7)))))); END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 242; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1341930830776; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 892040203572556731; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 8747932585247524490; mqVersion 275; checksumv 0 3 3308291479 null getNumChars 242 numChars 242 getNumTaxa 33 numTaxa 33 short true bits 95 states 95 sumSquaresStatesOnly 34821.0 sumSquares 34821.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1 errorReportedDuringRun; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 148; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 467; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; endTell; end;