#NEXUS [MacClade 4.08 registered to Evolutionary Phytopathology, CBS-KNAW] BEGIN DATA; DIMENSIONS NTAX=32 NCHAR=684; FORMAT DATATYPE=DNA MISSING=? GAP=- ; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Calonectria_lauri_CPC_15683 GA------GATTGTAAGTTTTCCCTGTCCTCGCAGCACCCATATCCCACCTCGGGTGCTCTTGAGATGCGAGCCTTTGTTGTTGTTGCTGCTGCTGCTGCCCCTGATTCTACCCCGCCGCCCCATGG--GTTTCCACCGCTT---CAAACGACAACAAAGCCGCAGCCTCGAGAACATGGCGATATAATCG--GGACATGA-TGGCTAACCGTGTGTTTCTTTCTCAATTATAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTGATCATCTTCAACTCCAAAAAAACTTTCTCACGATCGTGTTCACTGACTGTCGTCAATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATTTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACACTGGTACCTCCGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTATGTGAAAACTGCACCGAGAGCTCTCTGTGTCGAGACAAACAAAGTAAACTCACACGCGTCATGTAGGCTTCTGGCAACAAGTTCGTTCCCCGTGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAGCTCTTCCGTCCCGACAACTTCGTTTTCGGCCAGTCCGGTGCTGGAAACAACTGGGCCAAGGGTCACTACACTGAGGGT [670] Calonectria_lauri_AY078122 -------------------------------GCAGCACCCATATCCCACCTCGGGTGCTCTTGAGATGCGAGCCTTTGTTGTTG---CTGCTGCTGCTGCCCCTGATTCTACCCCGCCGCCCCATGG--GTTTCCACCGCTT---CAAACGACAACAAAGCCGCAGCCTCGAGAACATGGCGATATAATCG--GGACATGA-TGGCTAACCGTGTGTTTCTTTCTCAATTATAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTGATCATCTTCAACTCCAAAAAAACTTTCTCACGATCGTGTTCACTGACTGTCGTCAATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATTTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACACTGGTACCTCCGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTATGTGAAAACTGCACCGAGAGCTCTCTGTGTCGAGACAAACAAAGTAAACTCACACGCGTCATGTAGGCTTCTGGCAACAAGTTCGTTCCCCGTGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAGCTCTTCCGTCCCGACAACTTCGTTTTCGGCCAGNCCGGTGCTGGAAGCAACTGG------------------------ [618] Calonectria_lauri_AY078120 --------------------------------CAGCACCCATATCCCACCTCGGGTGCTCTTGAGATGCGAGCCTTTGTTGTTG---CTGCTGCTGCTGCCCCTGATTCTACCCCGCCGCCCCATGG--GTTTCCACCGCTT---CAAACGACAACAAAGCCGCAGCCTCGAGAACATGGCGATATAATCG--GGACATGA-TGGCTAACCGTGTGTTTCTTTCTCAATTATAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTGATCATCTTCAACTCCAAAAAAACTTTCTCACGATCGTGTTCACTGACTGTCGTCAATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATTTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACACTGGTACCTCCGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTATGTGAAAACTGCACCGAGAGCTCTCTGTGTCGAGACAAACAAAGTAAACTCACACGCGTCATGTAGGCTTCTGGCAACAAGTTCGTTCCCCGTGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAGCTCTTCCGTCCCGACAACTTCGTTTTCGGCCAGTCCGGTGCTGGAARCAACTGGGCCAAGGGTC-------------- [627] Calonectria_lauri_CBS_553.69 ---------------------------------------------------CGGGTGCTCTTGAGATGCGAGCCTTTGTTGTTG---CTGCTGCTGCTGCCCCTGATTCTACCCCGCCGCCCCATGG--GTTTCCACCGCTT---CAAACGACAACAAAGCCGCAGCCTCGAGAACATGGCGATATAATCG--GGACATGA-TGGCTAACCGTGTGTTTCTTTCTCAATTATAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTGATCATCTTCAACTCCAAAAAAACTTTCTCACGATCGTGTTCACTGACTGTCGTCAATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATTTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACACTGGTACCTCCGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTATGTGAAAACTGCACCGAGAGCTCTCTGTGTCGAGACAAACAAAGTAAACTCACACGCGTCATGTAGGCTTCTGGCAACAAGTTCGTTCCCCGTGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAGCTCTTCCGTCCCGACAA------------------------------------------------------------- [561] Calonectria_lauri_CPC_17978 -------AGATTGTAAGTTTTCCCTGTCCTCGCAGCACCCATATCCCACCTCGGGTGCTCTTGAGATGCGAGCCTTTGTTGTTGTTGCTGCTGCTGCTGCCCCTGATTCTACCCCGCCGCCCCATGG--GTTTCCACCGCTT---CAAACGACAACAAAGCCGCAGCCTCGAGAACATGGCGATATAATCG--GGACATGA-TGGCTAACCGTGTGTTTCTTTCTCAATTATAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTGATCATCTTCAACTCCAAAAAAACTTTCTCACGATCGTGTTCACTGACTGTCGTCAATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATTTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACACTGGTACCTCCGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTATGTGAAAACTGCACCGAGAGCTCTCTGTGTCGAGACAAACAAAGTAAACTCACACGCGTCATGTAGGCTTCTGGCAACAAGTTCGTTCCCCGTGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAGCTCTTC------------------------------------------------------------------------ [597] Calonectria_lauri_CBS_749.70 ------------------------------------------------------------------------------TTGTTGTTGCTGCTGCTGCTGCCCCTGATTCTACCCCGCCGCCCCATGG--GTTTCCACCGCTT---CAAACGACAACAAAGCCGCAGCCTCGAGAACATGGCGATATAATCG--GGACATGA-TGGCTAACCGTGTGTTTCTTTCTCAATTATAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTGATCATCTTCAACTCCAAAAAAACCTTCTCACGATCGTGTTCACTGACTGTCGTCAATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATTTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACACTGGTACCTCCGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTATGTGAAAACTGCACCGAGAGCTCTCTGTGTCGAGACAAACAAAGTAAACTCACACGCGTCATGTAGGCTTCTGGCAACAAGTTCGTTCCCCGTGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAGCTCTTCCGTCCCGACAACTT---------------------------------------------------------- [540] Calonectria_citri -------------------------------------------------------------------GCGTGCCTTTGTTGTTGTTG---------CTGCCCCTGATCCTACCCCGCCGCCCCATGGGTGTTTCCACCGCTT---CGAACGACAACAAAGCCGCAGCCTCGAGAACATGGCGAGATAATCG--GGATATGA-TTGCTAACCGTCTGTTTCTTTCTCAATTATAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTCACCATCTTCAACTCCGAAAAAACTTTCTCACGGCCATGTTCTCTAACTCTCGTCGATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATTTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACGCTGGTACCTCCGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTATGTGAAAACCGCGCCGAGAACTCTCTGTGTCGAGAC-AACACAGTAAACTCACACACG-CATGTAGGCTTCTGGCAACAAGTTCGTTCCTCGTGCCGTCCTCGTCGATCTCGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCCTTCGGTCAGCTCTTCCGCCCCGACAACTT---------------------------------------------------------- [542] Calonectria_leucotho�s_AF308466 -------------------------------------------------------------------GCGAGCCTTTGTTGTTGTTG---------CTGCCCCTGATCCTACCCCGCCGCCTCGGGGG-ATTTCCACCGCTT---CAAACGACAACAAAGCCGCAGCCTCGAGAACATGGCGAGATAATCG--GGATATGA-TGGCTAACCG--TGTTTCTTTCTCAATTCTAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTGATCCTATTCAACCCCCA-AAAACTTTCTCGCCGCCATGTTCACTGACAGTCGTCGATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATTTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACGCTGGTACCTCTGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTATGTGAAAATCACGCTGATAACACTCTTTGTTGAGAC-AACAAAGCGAACTCACACACGTCATGTAGGCTTCCGGCAACAAGTTCGTTCCCCGTGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCCTTCGGTCAGGCTCTTTCGCCCGACAACTT---------------------------------------------------------- [539] Calonectria_leucotho�s_AF308465 -------------------------------------------------------------------GCGAGCCTTTGTTGTTGTTG---------CTGCCCCTGATCCTACCCCGCCGCCTCGGGGG-ATTTCCACCGCTT---CAAACGACAACAAAGCCGCAGCCTCGAGAACATGGCGAGATAATCG--GGATATGA-TGGCTAACCG--TGTTTCTTTCTCAATTCTAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTGATCCTATTCAACCCCCA-AAAACTTTCTCGCCGCCATGTTCACTGACAGTCGTCGATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATTTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACGCTGGTACCTCTGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTATGTGAAAATCACGCTGATAACACTCTTTGTTGAGAC-AACAAAGCGAACTCACACACGTCATGTAGGCTTCCGGCAACAAGTTCGTTCCCCGTGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGCCCTTCGGGTCAGGCTCTTTCGCCCGACAACTT---------------------------------------------------------- [539] Calonectria_pauciramosa -----------------------GTTTGCCTGCCCTCGCACAGCATCACCACCGGAGCTCCTGAGACGCGTGCCTTTGTTG---------------CTGCCCCTGATTCTACCCCGCCGCCCCG-----GTTTCCACCGCTT---C-GACGACAACAAAGCCGCAGCCTCACGATCATAACGAGATA-TCA--GAACAAGA-TTGCTAACCGTGTGCTTCTTTCTCGATTATAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTACTC-TTCTCAACTCCAACAAAATTCTCAC--GACGAGATTCACTGACAGTTGTCGATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATTTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACGCCGGTACCTCCGAGCTCCAGCTCGAGCGTATGAACGTCTACTTCAACGAGGTATGTGAAAACCACTCGAAGCACTCCCTTGACCGAGAA-GCACAAGCCAACTCACAC-CATCATGTAGGCTTCCGGCAACAAGTTCGTTCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGCCCCGACAACTTCGTTTTCGGTCAGTCCGGTGCTGGAAACAACTGG------------------------ [604] Calonectria_colhounii_DQ190564 ---------------------------------------------------TCATGGCTTCTGAGACGCGTGCCTTTGTTG---------------CTGCCCCTGATTCTACCCCGCCGACCCG-----GTTTCCACCGCTT---C-GACGACAACAAAGCCGCAGCCTCACGAGCATGACGAGATA-TCG--AAACAAGATTTGCTGACCATGTGCTTCTTTTTCAATTATAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGCTC-TTGTCAACTCCAACAATATTATCAC-----GAGATTTACTGACATATGTCGATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACGCTGGTACCTCCGAGCTCCAGCTCGAGCGTATGAACGTCTACTTCAACGAGGTATGTGAAAGCTGCTTGGTGTACCC-CTATGTCGAGAG-ACGCAACTAAACTGACAC----CATGTAGGCCTCCGGCAACAAGTTCGTTCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGCCCCGACAACTT---------------------------------------------------------- [536] Calonectria_colhounii_DQ190557 ----------------------------------------------------CATGGCTTCTGAGACGCGTGCCTTTGTTG---------------CTGCCCCTGATTCTACCCCGCCGACCCG-----GTTTCCACCGCTT---C-GACGACAACAAAGCCGCAGCCTCACGAGCATGACGAGATA-TCG--AAACAAGATTTGCTGACCATGTGCTTCTTTTTCAATTATAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGCTC-TTGTCAACTCCAACAATATTATCAC-----GAGATTTACTGACATATGTCGATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACGCTGGTACCTCCGAGCTCCAGCTCGAGCGTATGAACGTCTACTTCAACGAGGTATGTGAAAGCTGCTTGGTGTACCC-CTATGTCGAGAG-ACGGAACTAAACTGACAC----CATGTAGGCCTCCGGCAACAAGTTCGTTCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGCCCCGACAACTT---------------------------------------------------------- [535] Calonectria_colhounii_DQ190560 ---------------------------------------------------TCATGGCTTCTGAGACGCGTGCCTTTGTTG---------------CTGCCCCTGATTCTACCCCGCCGACCCG-----GTTTCCACCGCTT---C-GACGACAACAAAGCCGCAGCCTCACGAGCATGACGAGATA-TCG--AAACAAGATTTGCTGACCATGTGCTTCTTTTTCAATTATAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGCTC-TTGTCAACTCCAACAATATTATCAC-----GAGATTTACTGACATATGTCGATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACGCTGGTACCTCCGAGCTCCAGCTCGAGCGTATGAACGTCTACTTCAACGAGGTATGTGAAAGCTGCTTGGTGTACCC-CTATGTCGAGAG-ACGGAACTAAACTGACAC----CATGTAGGCCTCCGGCAACAAGTTCGTTCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGCCCCGACAACT----------------------------------------------------------- [535] Calonectria_ilicicola_AY725631 -----------------------------------------------------------TGAGAGACGCGTGCCTTTGTTG---------------CTGCCCCTGAGCGTACCCCGCCGCCCCG-----GTTTCGACCGCTT---C-GACAGCAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGGAGGACAAGG-TTGCTGACTAT-TATTTCTTTCTCAATTCTAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGATC-ATTCCAGCTTCCAAAAACTGCCCTG-----GGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAATAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCACAAACTCACACGATACAGGCTTCCGGCAACAAGTATGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCT-------------------------------------------------------------------------- [513] Calonectria_ilicicola_AY725645 ---------------------------------------------------AGAGCTCTTGAGAGACGCGTGCCTTTGTTG---------------CTGCCCCTGAGCGTACCCCGCCGCCCCG-----GTTTCGACCGCTT---C-GACAGCAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGGAGGACAAGG-TTGCTGACTAT-TATTTCTTTCTCAATTCTAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGATC-ATTCCAGCTTCCAAAAACTGCCCTG-----GGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAATAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCACAAACTCACACGATACAGGCTTCCGGCAACAAGTATGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCA------------------------------------------------------------------------------- [516] Calonectria_ilicicola_AY725646 ---------------------------------------------------AGAGCTCTTGAGAGACGCGTGCCTTTGTTG---------------CTGCCCCTGAGCGTACCCCGCCGCCCCG-----GTTTCGACCGCTT---C-GACAGCAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGGAGGACAAGG-TTGCTGACTAT-TATTTCTTTCTCAATTCTAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGATC-ATTCCAGCTTCCAAAAACTGCCCTG-----GGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAATAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCACAAACTCACACGATACAGGCTTCCGGCAACAAGTATGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGG---------------------------------------------------------------------------------- [513] Calonectria_ilicicola_AY725647 ---------------------------------------------------AGAGCTCTTGAGAGACGCGTGCCTTTGTTG---------------CTGCCCCTGAGCGTACCCCGCCGCCCCG-----GTTTCGACCGCTT---C-GACAGCAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGGAGGACAAGG-TTGCTGACTAT-TATTTCTTTCTCAATTCTAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGATC-ATTCCAGCTTCCAAAAACTGCCCTG-----GGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAATAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCACAAACTCACACGATACAGGCTTCCGGCAACAAGTATGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTC------------------------------------------------------------------------------------ [511] Calonectria_ilicicola_AY725643 -------------------------------------------------------------------GCGTGCCTTTGTTG---------------CTGCCCCTGAGCGTACCCCGCCGCCCCG-----GTTTCGACCGCTT---C-GACAGCAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGGAGGACAAGG-TTGCTGACTAT-TATTTCTTTCTCAATTCTAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGATC-ATTCCAGCTTCCAAAAACTGCCCTG-----GGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAATAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCACAAACTCACACGATACAGGCTTCCGGCAACAAGTATGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGTCCCGACAACTT---------------------------------------------------------- [521] Calonectria_ilicicola_AY725639 -------------------------------------------------------------------GCGTGCCTTTGTTG---------------CTGCCCCTGAGCGTACCCCGCCGCCCCG-----GTTTCGACCGCTT---C-GACAGCAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGGAGGACAAGG-TTGCTGACTAT-TATTTCTTTCTCAATTCTAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGATC-ATTCCAGCTTCCAAAAACTGCCCTG-----GGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAATAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCACAAACTCACACGATACAGGCTTCCGGCAACAAGTATGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGTCCCGACAACTT---------------------------------------------------------- [521] Calonectria_ilicicola_AY725637 -------------------------------------------------------------------GCGTGCCTTTGTTG---------------CTGCCCCTGAGCGTACCCCGCCGCCCCG-----GTTTCGACCGCTT---C-GACAGCAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGGAGGACAAGG-TTGCTGACTAT-TATTTCTTTCTCAATTCTAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGATC-ATTCCAGCTTCCAAAAACTGCCCTG-----GGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAATAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCACAAACTCACACGATACAGGCTTCCGGCAACAAGTATGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGTCCCGACAACTT---------------------------------------------------------- [521] Calonectria_ilicicola_AY725636 -------------------------------------------------------------------GCGTGCCTTTGTTG---------------CTGCCCCTGAGCGTACCCCGCCGCCCCG-----GTTTCGACCGCTT---C-GACAGCAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGGAGGACAAGG-TTGCTGACTAT-TATTTCTTTCTCAATTCTAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGATC-ATTCCAGCTTCCAAAAACTGCCCTG-----GGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAATAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCACAAACTCACACGATACAGGCTTCCGGCAACAAGTATGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGTCCCGACAACTT---------------------------------------------------------- [521] Calonectria_ilicicola_AY725642 -----------------------------------------------------------TGAGAGACGCGTGCCTTTGTTG---------------CTGCCCCTGAGCGTACCCCGCCGCCCCG-----GTTTCGACCGCTT---C-GACAACAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGGAGGACAAGG-TTGCTGAC----TATTTCTTTCTCAATTCTAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGATC-ATTCCAGCTTCCAAAAACTGCCCTG-----GGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTTGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAACAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCACAAACTCACACGATACAGGCTTCCGGCAACAAGTATGTCCCTCGAGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGTCCCGACAACTT---------------------------------------------------------- [526] Calonectria_ilicicola_GU256594 -----------GAGATTGTAAGTTTTCCTGCCCTCGCACAGCATCATGCCCAGAGTTCTTGAGAGACGCGTGCCTTTGTTG---------------CTGCCCCTGAGCGTACCCCGCCGCCCCG-----GTTTCGACCGCTT---C-GACAACAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGGAGGACAAGG-TTGCTGAC----TATTTCTTTCTCAATTCTAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGATC-ATTCCAGCTTCCAAAAACTGCCCTG-----GGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTTGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAACAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCACAAACTCACACGATACAGGCTTCCGGCAACAAGTATGTCCCTCGAGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGTC-------------------------------------------------------------------- [564] Calonectria_ilicicola_GU256586 --------------ATTGTAAGTTTTCCTGCCCTCGCACAGCATCATGCCCAGAGTTCTTGAGAGACGCGTGCCTTTGTTG---------------CTGCCCCTGAGCGTACCCCGCCGCCCCG-----GTTTCGACCGCTT---C-GACAACAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGGAGGACAAGG-TTGCTGAC----TATTTCTTTCTCAATTCTAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGATC-ATTCCAGCTTCCAAAAACTGCCCTG-----GGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTTGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAACAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCACAAACTCACACGATACAGGCTTCCGGCAACAAGTATGTCCCTCGAGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTT------------------------------------------------------------------------- [556] Calonectria_pacifica_GQ267213 -----------------------------------------------------------TGAGAGACGCGTGCCTTTGTTG---------------CTGCCCCTGAGCGTACCCCGCCGCCCCG-----GTTTTGACCGCTT---C-GACAACAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGAAGGACAAGG-TTGCTGACTAT-TATTTCTTTCTCAATTCTAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTGATC-ATTCCAGCTTCCAAAAACTCCCCTG-----AGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAATAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCACAAACTCACATGATACAGGCTTCCGGCAACAAGTATGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGTCCCGACAACT----------------------------------------------------------- [528] Calonectria_pacifica_AY725630 -----------------------------------------------------------TGAGAGACGCGTGCCTTTGTTG---------------CTGCCCCTGAGCGTACCCCGCCGCCCCG-----GTTTTGACCGCTT---C-GACAACAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGAAGGACAAGG-TTGCTGACTAT-TATTTCTTTCTCAATTCTAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTGATC-ATTCCAGCTTCCAAAAACTCCCCTG-----AGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAATAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCACAAACTCACATGATACAGGCTTCCGGCAACAAGTATGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCT---------------------------------------------------------------------------- [511] Calonectria_kyotensis_GQ267209 --------------ATTGTAAGTTTTCCTGCCCTCGCACAGCATCATGCCCAGAGCTCTTGAGAGACGCGTGCCTTTGTTG---------------CTGCCCCTGAGCGTACCCCGCCGCCCCG-----GTTTCGACCGCTTCGAC-GACAACAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGAAGGACAAGG-TTGCTGACTAT-TATTTCTTTCTCAATTCTAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTGATC-ATTCCAGCTTCCAAAAACTCCCCTG-----AGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAATAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCACAAACTCACACGATACAGGCTTCCGGCAACAAGTATGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGTCCCG----------------------------------------------------------------- [570] Calonectria_kyotensis_GQ267208 --------------ATTGTAAGTTTTCCTGCCCTCGCACAGCATCATGCCCAGAGCTCTTGAGAGACGCGTGCCTTTGTTG---------------CTGCCCCTGAGCGTACCCCGCCGCCCCG-----GTTTCGACCGCTTCGAC-GACAACAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGAAGGACAAGG-TTGCTGACTAT-TATTTCTTTCTCAATTCTAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTGATT-ATTCCAGCTTCCAAAAACTGCCTTG-----AGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAATAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCACAAACTCACACGATACAGGCTTCCGGCAACAAGTATGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGTCCCG----------------------------------------------------------------- [570] Calonectria_colombiensis TTTAACAGGCGGGGATTGTAAGTTTTCCTGCCCTCGCACAGCATCATGACCTGAGCTCTTGAGAGACGCGTGCCTTTGTTG---------------CTGCCCCTGAGCGTACCCCGCCGCCCCG-----GTTTCGACCGCTT---C-GACAACAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGGAGGACAAGG-TTGCTGACTAT-TATTTCTTCCTCAATTCTAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTGATC-ATTCCAGCTTCCAAAAACTGCCTTG-----AGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCTGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAATAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCCCAAACTCATACGATACAGGCTTCCGGCAACAAGTATGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGTCCCG----------------------------------------------------------------- [581] Calonectria_curvispora -------------------------------------------------------------------GCGTGCCTTTGTT----------------CTGCCCCTGAGCGTACCCCCCCGCCCCG-----GTTTCGACCGCTT---C-GACAACAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGGAGGACAAGG-TTGCTGACTA--TATTTCTTTCTCAATTCTAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTGATC-ATTCCAGCTTCCAAAAACTGCCCTG-----AGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAATAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCACAAACTCACACGATACAGGCTTCCGGCAACAAGTATGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGTCCCGA---------------------------------------------------------------- [513] Calonectria_cf._ilicicola -------------------------------------------------------------------GCGTGCCTTGGTTG---------------CTGCCCCTGAGCGTACCCCGCCGACCCG-----GTTTCGACCGCTT---C-GACAACAACAAAGCTCGACGACCCCAAGCACGATGTGATA-TCGGAGGACAAGG-TTGCTGACTAT-TATTTCTTTCTCAATTCTAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGATC-ATTCCAGCTTCCAAAAACTGCCCTG-----AGGATTCACTAACATTCGCGATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTTA--AAATAAAACGCTCGCCTGGTCGAAAA---ACTTGTGCACTAACTCACACGATACAGGCTTCCGGCAACAAGTATGTCCCTCGCGCTGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGACCCGACAACTT---------------------------------------------------------- [521] Cylindrocladiella_lageniformis ----------------------------------------------------CAGCTTCCACTCGATACAACGCGTTGTTG---------------CTGCCCCTGATTCTACCCCGCCGAATCG-----TTTCCCACCGCCT---C-GACAACAACAAAGCTCGCGATGCCCACCCACACCATGATA-TCT--GAACATAA-TGGCTAATTTTGCG-TGTTTCTGCGAATATAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTG--CATTCCTCACCTCGACAAGCCTCGTCA-----ACGGCTGCTAACGGTGTCTTGATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTTTACAACGGCAGCTCTGAGCTCCAGCTCGAGCGCATGAGCGTCTACTTCAACGAGGTACGTGACCA-------GAGCACTCTCATTTGCTGTGA-ACGATAATGT----ACTCACGCTTCATAGGCTTCTGGCAACAAGTATGTCCCTCGCGCCGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTTTTCCGCCCCGACAACTT---------------------------------------------------------- [526] ; END; BEGIN CODONS; CODONPOSSET * CodonPositions = N: 1-684; CODESET * UNTITLED = Universal: all ; END; BEGIN SETS; CHARSET allfive = 79-600; TAXSET outgroups = 1; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; END; BEGIN TREES; [! >Data file = /Users/e.groenewald/tub.nex >Heuristic search settings: > Optimality criterion = parsimony > Character-status summary: > 162 characters are excluded > Of the remaining 522 included characters: > All characters are of type 'unord' > All characters have equal weight > 295 characters are constant > 47 variable characters are parsimony-uninformative > Number of (included) parsimony-informative characters = 180 > Gaps are treated as "fifth base" > Starting tree(s) obtained via stepwise addition > Addition sequence: random > Number of replicates = 100 > Starting seed = 1432482157 > Number of trees held at each step during stepwise addition = 1 > Branch-swapping algorithm: tree-bisection-reconnection (TBR) > Steepest descent option not in effect > Initial 'MaxTrees' setting = 1000 > Branches collapsed (creating polytomies) if maximum branch length is zero > 'MulTrees' option in effect > Topological constraints not enforced > Trees are unrooted > >Heuristic search completed > Total number of rearrangements tried = 1413836 > Score of best tree(s) found = 381 > Number of trees retained = 1 > Time used = 1 sec (CPU time = 1.02 sec) ] TRANSLATE 1 Calonectria_lauri_CPC_15683, 2 Calonectria_lauri_AY078122, 3 Calonectria_lauri_AY078120, 4 Calonectria_lauri_CBS_553.69, 5 Calonectria_lauri_CPC_17978, 6 Calonectria_lauri_CBS_749.70, 7 Calonectria_citri, 8 Calonectria_leucotho�s_AF308466, 9 Calonectria_leucotho�s_AF308465, 10 Calonectria_pauciramosa, 11 Calonectria_colhounii_DQ190564, 12 Calonectria_colhounii_DQ190557, 13 Calonectria_colhounii_DQ190560, 14 Calonectria_ilicicola_AY725631, 15 Calonectria_ilicicola_AY725645, 16 Calonectria_ilicicola_AY725646, 17 Calonectria_ilicicola_AY725647, 18 Calonectria_ilicicola_AY725643, 19 Calonectria_ilicicola_AY725639, 20 Calonectria_ilicicola_AY725637, 21 Calonectria_ilicicola_AY725636, 22 Calonectria_ilicicola_AY725642, 23 Calonectria_ilicicola_GU256594, 24 Calonectria_ilicicola_GU256586, 25 Calonectria_pacifica_GQ267213, 26 Calonectria_pacifica_AY725630, 27 Calonectria_kyotensis_GQ267209, 28 Calonectria_kyotensis_GQ267208, 29 Calonectria_colombiensis, 30 Calonectria_curvispora, 31 Calonectria_cf._ilicicola, 32 Cylindrocladiella_lageniformis ; TREE * Fig._1 = [&R] (((((((1,(2,3,4),5,6),7),(8,9)),10),(11,(12,13))),((((14,15,16,17,18,19,20,21),(22,23,24)),(((25,26),(27,28)),29,30)),31)),32); END; BEGIN MacClade; Version 4.0 87; LastModified -925681984; FileSettings editor '0' '0' '1' '1'; Singles 100; Editor 00011001111111100100010010 '0' '24' Geneva '9' '434' '1' all; EditorPosition '46' '6' '675' '1777'; TreeWindowPosition '46' '6' '1135' '1870'; ListWindow Characters closed Geneva '9' '50' '10' '273' '399' 000; ListWindow Taxa closed Geneva '9' '50' '10' '273' '405' 100000000; ListWindow Trees closed Geneva '9' '50' '25' '129' '379' ; ListWindow TypeSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow ExSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow CharSets 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