#NEXUS [written Tue Dec 02 17:52:01 CST 2014 by Mesquite version 2.75 (build 564) at Lenovo-PC/192.168.137.121] BEGIN TAXA; TITLE 'Fagopyrum tataricum ART1-like genes'; DIMENSIONS NTAX=12; TAXLABELS FtARL1 FtARL2 OsART1 AtSTOP1 'BAN67816(N.tabacum)' 'XP_004250372(S.lycopersicum)' 'BAN67817( L.japonicus)' 'XP_002526844(R.communis)' 'EMT26835(A.tauschii) ' 'XP_003564719(B.distachyon) ' 'ACN25425(Z.mays)' 'AGS15193(T.aestivum)' ; END; BEGIN CHARACTERS; TITLE ART1; LINK TAXA = 'Fagopyrum tataricum ART1-like genes'; DIMENSIONS NCHAR=563; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX FtARL1 -MEQKEGSSEDSWTKPM-----SFMASTQSLL-FNDQSFGVANSQQREQNWENSPMLDYGALMESLLSKFDQTSRTP----------------------PFLEEKIHQDWDPTAMLSNLSFLEEKIHQLQELVHIFVARRGQVSTCTDELATR-QQLITADVTTIFVQLISMAGNLLPSPK-----------------IDLVADEVEENG-GLNKSLNQ--TNCGAMENDS------------------------------CMIDDHELKDDDEPNDEEHLPPGS----YEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPLKDS--NSSEPVLPKRYSCPYMGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKTYTCSRCNTKKFSVIADLKTHEKHCGREKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPIEFNKGSAATSSNPVENN-------EPSINKDGMDFSFISDNSYGNATRNIMDDSYFSLSSFDGCNIL--QEFSQSSFDDPGTSFPFLLSGCKNGLQSGTDDIDS----- FtARL2 -MEPEKG---ESWAKAM-----PFMGLTQNLS-FSNQSFNVANLQQCEQNWENN--------MFSQFNDQNKIPHAD----------------------DGLNNNNNQDWDPKATLSNLSFLEQKIHQLQELVHIIVGHRSQVTVGVNELATQ-QQLITANLTSIIMQLTSTAASLLPSVNN-------------GQLNDVFFPPAQKNMSDVNTHVQN--CQVGPTENRGET-----EKSY-------------------NCMDGHELKEED---DEEHLPPGS----YEILQLEKEEILAPHAHFCTICGKGFKRNANLRMHMRGHGDEYKTLAALAKPQKES--EELEPVILKRYSCPSRGCKRNKEHKRFQPLKTLLCVKNHYKRTHCDKTYICSRCNTKKFSIISDLKTHEKHCGKDKWLCSCGTSFSRKDKLFGHIALFQGHTPALPYEENKVLVGSSSDPAENG-------EASNNK--LESMTFSDDSNG----------FGVFMGFDGCNMVGLQEYAQSAYDDSETSFPFLQ--------------------- OsART1 -MD--------------------RDQMTNTMR-DQAANLTSMNPLFYPFMADDALLG-----MAPPPPQQLLPSVSI----------------------------QHMDWSPDTMLDNLTFIEEKIRQVKDVIRSMAGRR----ASSSSAATPEQQLVNADLTCLIVQLISTAGSLLPSLKNSSFLSRTTPPPAAAAGAAQAVSLAAGESSSSARNNETNREDEEEQMGSPDYDELFKVWTNG------------------GAMDECVGAAGDEQDARENPAAAAEEEKYEVLQLEEDEILAPHTHFCGICGKGFKRDANLRMHMRGHGDEYKSAAALAKPPPPPEGEEQPPQPERRYSCPHAGCKRNRMHASFQPLKTILCVKNHYKRSHCEKRHVCGRCGAKRFSVMADLKTHEKHCGRDRWLCSCGTSFSRKDKLFAHVALFQGHAPALPPPPPPPTSGRRRHKQEEP-------EFTWGGGGGNEFLDVKGIAGVGSGSGGGDEFFSAGSFGAMDFG---------FGQLDASLAMLLPSEQFAGDHQEENGDK----- AtSTOP1 -METEDDLCNTNWGSSS-----SKSREPGSSD-CGNSTFAGFT---SQQKWEDASILDYEMGVEPGLQESIQANVDF------------------------LQGVRAQAWDPRTMLSNLSFMEQKIHQLQDLVHLLVGRGGQLQGRQDELAAQQQQLITTDLTSIIIQLISTAGSLLPSVKHN-MS--TAPGPFTGQPGSAVFPYVREANNVASQSQNN--NNCGAREFDLPKPVLVDEREG-------------------HVVEEHEMKDEDDVEEGENLPPGS----YEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKESV-PGSEPMLIKRYSCPFLGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSFTCSRCHTKKFSVIADLKTHEKHCGKNKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLEETKPSASTSTQRGSSEGGNNNQGMVGFNLGSASNANQETTQPGMTDGRICFEESFSPMNFDTCNFGGFHEFPRLMFDDSESSFQMLIANACGFSPRNVGESVSDTSL- 'BAN67816(N.tabacum)' -MDPDDSLSEDPWTKPS----SSGNELLKIVP-SDNHSFTNFN--LHAQKWEGSSYLDQQTRIEQQFSGFTQPKHTY------------QMDQHGNQMNENHDSTSTKDWDPSNLLNNLSFLEQKIHQLQELVHLIVGRRGQTGLQGNDLIVQQQQLITADLTSIIVQLVSTAGSLLPTMKHS-LSSVSHAASQLVQFGGVTVPSATCTNGGGLPCNDGGVTKVEDQSNHVDQLRDCGIEQS-------------------HAVDGHESKDEDEAEEEENLPPGS----YEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKE---PSSEPTLIKRYSCPNVGCKRNKEHKKFQPLKTILCVKNHYKRTHCEKAYTCSRCNIKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAVPLDETKGSAGTSDRGQTSE--VTMKARQEDFKVNASHGNEFQDPRDIKSAADDPGSYFSPLNFDTSNLNGFQEFPRPPFDESDSSFSFLLSGSCEYPPHKAAKYMSFTELE 'XP_004250372(S.lycopersicum)' -MDPDDSLSEDPWIKSS----SSGNELLKIMP-SDNHSFTNLN--LHEQKWEGSSYLDQEIRIEQQFTGFAKPKHTS------------EMDQQG---NQNHDTTRIHDWDPRALLNNLSFLEQKIHQLQELVHLIVGRRGQDEVQGNDLIVQQQQLITADLTSIIVQLISTAGSLLPTMKYT-LSSAIPAASQLGQVGGVTVPSTAGTSAGGLTCNDG-VAKLEDQSNHIDQLRDCGIEHN-------------------HAADEHELKDEDEAEEEENLPPGS----YEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKE---PSSEPTLIKRYSCPYVGCKRNKEHKKFQPLKTILCVKNHYKRTHCEKAYTCSRCNIKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHISLFQGHTPAVSPDETKGSAGTSDRGQTGE--VTMKARQENYKVNASLGNEFQNPGVVKECPYNPSSYFSPLNFDTSNLNGFQEFPRPPFDESDSSFSFLLSGSCEYPPHKAAKFMSSSEME 'BAN67817( L.japonicus)' -MDSKGSLRATTWAKSSSLTTSAENGLQTNISSADSFSLPGFGSLHNQHKWPDPSISDYGVREEAPLQGFSQPSQAQTLLPCDTNNKIKIPDQENCPLSESSQTNRLQNWDPSVMLYNLSFLENKIHELQDLVHLIVSQK----DQPNEIVTQEQQLITTDLTSIIVQLISTAGSLLPSVRQT-LINGNPLVGQLGQLCGIAVPSGSGPSSSCIQPQNNNGNKLSDQSMQNDLPSNREMEQN-------------------Y-MEEHEYKDE-DADDGDNLPPGS----YEILQLEKEEILAPHAHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKE---SGSQPKLIKRYSCPYHGCKRNKDHKKFLPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVLADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDESKENNKVG-------------GMNSCLVSNPSTENGVQNIMDARANIDDPISYLSSLNFEAN-FGAFNEFTRPPPEESESSFSFFMPGSFKPGGESSRDNIL----- 'XP_002526844(R.communis)' -MDRKERLCTETWANSS----SSGSGLPEHLS-TEKPSFANFSSQQDQQKWEDTAI--YGIRTDPPFQEFNLPSETQTLLPSNPDDQIKIMDEEDSHINEALQINKIPDWDPKAMLSNLSFLEQKIHQLQDLVHLIVGRRGQILERPDDLVAQQQQLITADLTSIIVQLISTAGSLLPSVKHT-LFAATP-GGQLGHLGEILFPSGMG-MNSIVQPQHSSGNKLSHHSNQMDISGNCGTEQN-------------------YSVDEHELKDEEDVEEGENLPPGS----YEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPNKE---SSSEP-VLKRYSCPFAGCKRNKDHKNYN-----LGIG-----------YLSPPLNNLKINKMAI-------------------------------------------------------------------------------------------------------------------------------------------------------- 'EMT26835(A.tauschii) ' ----------------------MASDASGNTE-PGQQGVRFSSMDQSCFARPGQSIPGYPPFFGPQSSNFYLPDDSV-------------AKACDLFEPNPPQNNPVADWDPQAMLSNLTFLEQKIKQVKDIVQSMGNRGSQDAGGSCELAAK-QQLVTADLTSIIIQLISTAGSMLPSMKTP-LLSSNPAVRQLN-TPGSPMGFGSIVNQRPSTIREEVVNDISKTSDYEELMNTLNTAHDEKDDLIKCPNPCVGEGPEPVPMEDHDVKESDDGGEAEHLPPGS----YVVLQLEKEEILAPHTHFCVICGKGFKRDANLRMHMRGHGDEYKTPAALAKPMRD---SGSDPTPVTRYSCPYVGCKRNKEHRKFQPLKTILCVKNHYKRSHCDKRYTCSRCNTKKFSVIADLKTHEKHCGRDKWLCSCGTTFSRKDKLFGHVALFQGHTPALPMDDIKASGALEQPQGSEA----MDDMVASTGYNFPGSTSDGIPNLDMKVADDTRGYFSPLNFDPC-FGALDDFARPGFDISENPFSFLPSGPGSCSFGQLSGDS------ 'XP_003564719(B.distachyon) ' MESGMRRSSETSVKALS----SMASEASRNTD-PGQQGLRFNSTDQSYFARAGQSIPVFPPFFGPQSSSFCLPDGSG-------------AKVGGQFEPNPSLNNPISDWDPQAMLSNLSFLEQKIKQVKDVVQSMSNRGSQVVGGSGELAAK-QQLVTADLTCIIIQLISTAGSMLPSMKSP-LLSSNPAVRQLSNTLGSPMGFGSIANQRPSINKEQTIPDITKTSDYEELMNTINTTHDGKDDLIKCPNPCVGEGSDPIPFEDHDVKESDDGGEGENLPPGS----YVVLQLEKEEILAPHTHFCVICGKGFKRDANLRMHMRGHGDEYKTPAALAKPMKD---SSSDHTPVTRYSCPFVGCKRNKEHRKFQPLKTILCVKNHYKRSHCDKSYTCSRCNTKKFSVIADLKTHEKHCGRDKWLCSCGTTFSRKDKLFGHVALFQGHTPALPMDDIKGTCVSDQPEGSEV----MDDMVGSTGYNFPGSASDGIPNLDMKVADDVRGYFSPLSFDPC-FGALDDFTRPGFDISENPFSFLPSGPGSCSFGQPSGDS------ 'ACN25425(Z.mays)' -MEGRMTSLEATMKVSS----SMASSISRNAD-PDQQTLRPNSVEQFYFPRPGQSLPGIPPFFGPPSSSLYLPNDNE-------------AKFGNQFESNPSQN---TDWDPQAIVSNLTFLEQKIKQVKDIVQSMSNRENQLAGGSSELAAK-QHLVTADLTSIIIQLISTAGSLLPSMKNP-LLSSNPAVRQLGNTLGSPMGLGMNANQRPSVDSKTDIPDTGKTSDYDELMNSLNPAQDERDEMIKCPNPCGGEGSEPTPMEDHDVKESDDGGEGENLPPGS----YVVLQLEKEEILAPHTHFCLICGKGFKRDANLRMHMRGHGDEYKTPAALAKPTKD---SGADHAPVTRYSCPFVGCKRNKEHKKFQPLKTILCVKNHYKRSHCDKSYTCSRCNTKKFSVIADLKTHEKHCGRDKWLCSCGTTFSRKDKLFGHVALFQGHTPALPMEDVKVSEASEQPQDSEP----MNEMARSNMYSFPCSSSDGISNLDMKMADDVRGYFSPLNFDPC-FGALDDFTRPGFDISENPFSFLPSG--SCSYGQQNGDS------ 'AGS15193(T.aestivum)' ------------MKASS----SMASDASGNTD-PGQQGARFSSMDQSCFARPGQSIPGYPPFFGPQSSNFYLPDDSV-------------AKACDPFEPNPPQNNPVADWDPQAMLSNLTFLEQKIKQVKDIVQSMGNRGSQDVGGSCELAAK-QQLVTADLTSIIIQLISTAGSMLPSMKTP-LLSSNPAVRQLN-TPGSPMGFGSIVNQRPSTVREEMVPDITKTPDYEDLMNTLNPAHDEKDDLIKCPNPCVGEGPEPVPMEDHDVKESDDGGEAEHLPPGS----YVVLQLEKEEILAPHTHFCVICGKGFKRDANLRMHMRGHGDEYKTPAALAKPMRD---SVSDPTPVTRYSCPYVGCKRNKEHRKFQPLKTILCVKNHYKRSHCDKRYTCSRCNTKKFSVIADLKTHEKHCGRDKWLCSCGTTFSRKDKLFGHVALFQGHTPALPMDDIKATGASE--QRSEA----MDDMVGSTGYNFPGSTSDGIPNLDMKVADDTRGYFSPLNFDPC-FGALDDFARPGFDISENPFSFLPSGPGSCSFGQLSGDS------ ; END; BEGIN TAXA; TITLE Fagopyrum_tataricum_STAR2_gene; DIMENSIONS NTAX=7; TAXLABELS FtSTAR2 AtALS3 OsSTAR2 'XP_007027163(Theobroma cacao)' 'XP_002274040(Vitis vinifera)' 'NP_001146856(Zea mays)' 'XP_002440497(Sorghum bicolor)' ; END; BEGIN CHARACTERS; TITLE STAR2; LINK TAXA = Fagopyrum_tataricum_STAR2_gene; DIMENSIONS NCHAR=286; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX FtSTAR2 -------------ISQVRLIKMDWGWLSEFMKGMLKPVAALTVVLMAVALSYLQRLDLQGEMIYSIFRAFLQLSIIGFVLQFIFNQQNIAWILLAYLFMVSVAGYTAGKRAKHVPKGMYVAGASILAGTSVTMFLLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKSQTNLVETALALGATPRQAVLQNMKRALVIALSPVLDNAKTVGLISLPGAMTGLIMGGASPLEAIQLQIIVMNMLIGASTFSSIMSTYLCWPNFFTKTYQLESKVFSSD- AtALS3 ------------MDLKWDDFFNDYEWLIVFLKGMVKPAAALVVVLLAVILSYSQNLSLEGEMIYSVSRSFLQLSVIGFVLQFIFNQENSGWIILAYLFMVSVAGYTAGQRARHVPRGKYVAGLSILAGTSITMFLLVLLNVFPFTPRYMIPIAGMLVGNAMTVTGVTMKQLRDDIKMQLNLVETALALGATPRQATLQQVKRALVISLSPVLDSCKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMMVGAATVSSITSTYLCWPSFFTKAYQLQTHVFSSD- OsSTAR2 MMASMAALLQRLLVVVNQVDPGAPGFWREFLVGMLKPVAATAVVAMAVALSFTQRLGLEGEMLYAMARAFLQLSVIGFVLQFIFTQKSAAWILLAYLFMVTVAGYTAGQRARHVPRGKHIAAVSILAGTSVTMALLVALRVFPFTPRYIIPVAGMMVGNAMTVTGVTMKKLREDVGMQRGVVETALALGATPRQATARQVRRSLVIALSPVIDNAKTVGLIALPGAMTGLIMGGASPLEAIQLQIVVMNMLMGASTVSSILSTYLCWPAFFTGAFQLNDAVFAAD- 'XP_007027163(Theobroma cacao)' ---------------------MDWDWLFEFLKGMVKPVAALSVVLMAVLLSFMQKLGLEKEMIYSILRAFLQLSVIGFVLQFIFNQENSGWIVLAYLFMVSVAGYTAGQRAKHVPRGKYVAGISILAGTAVTMFLLVILNVFPFTPRYVIPVAGMMVGNAMTVTGVTMKRLRDDIKIQMNLVETALALGATPRQATLEQVKRALVIALSPVLDNAKTVGLISLPGAMTGLIMGGASPIEAIHLQIVVMNMLIGASTVSSIMSTYLCWPAFFTKAYQLETKVFSSD- 'XP_002274040(Vitis vinifera)' ---------------------MDFDWVMEFLRGMVKPVAALAVVLMAVALSYFQKLGLEGEMVYSILRAFLQLSVIGFVLQFIFTQANSGWILLVYFFMVSVAGYTAGQRAKHVPRGKYVAGASILAGTAVTLFLLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATLQQMKRALVIALSPVLDNAKTVGLISLPGAMTGLIMGGASPLEAIQVQIVVMNMLVGASTVSSIMSTYLCWPAFFTKAYQLETHVFRSD- 'NP_001146856(Zea mays)' ------------------------GFWRDFLVGMLKPAAATAVVAMAVGLSFSQRLGLEGEMLYAIARAFLQLSAIGFVLQFIFAQKNALWILLAYLFMVTVAGYTAGQRARQVPRGKRIACVSILVGTAVTMLLLVLLDVFPFTPRYIIPVAGMMVGNAMTVTGVTMKKLREDVKIQRNLVETALALGATPRQATLQQVKRSLVIALSPVIDSAKTVGLIALPGAMTGLIMGGASPLEAIQLQIVVMNMLMGASTVSSILSTYLCWPAFFTKAFQLDDRVFAD-- 'XP_002440497(Sorghum bicolor)' ----MAAFLD--QLVAGQVDPGAPGFWRDFLIGMLKPVAATAVVAMAVALSFSQRLGLEGEMLYAIARAFLQLSVIGFVLQFIFTQKNVLWILLAYLFMVTVAGYTAGQRAKQVPRGKYIACVSILVGTAITMFLLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKKLREDVKIQRNLVETALALGATPRQATLQQVKRSLVIALSPVIDSAKTVGLIALPGAMTGLIMGGASPLEAIQLQIVVMNMLMGAATVSSILSTYLCWPAFFTKAFQLEDKVFA--- ; END; BEGIN TAXA; TITLE 'Fagopyrum tataricum STAR1-like genes'; DIMENSIONS NTAX=10; TAXLABELS FtSTOL1 FtSTOL2 'CAN70271(Vitis vinifera)' 'XP_002325227(Populus trichocarpa)' 'XP_006366268(Solanum tuberosum)' AtSTAR1 'EMT05468(Aegilops tauschii)' 'XP_004966143(Setaria italica)' 'EMS52544(Triticum uraatu)' OsSTAR1 ; END; BEGIN CHARACTERS; TITLE STAR1; LINK TAXA = 'Fagopyrum tataricum STAR1-like genes'; DIMENSIONS NCHAR=294; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX FtSTOL1 CALYCFHIKLSSLPLTASYFYELTAMSARENLQDDEEATELSILVQGDDRDTSEVKIRVRGLRKESDA-GTTILSGVDVDIPAGKIVGIVGPSGSGKSTFLRALN--RLWEPPPGTVYLDGCDICNLDVINLRRRVGMLFQLPALFQGTVADNVRYGPKLKGKRLGDDEVYKLLSFADLDSSFYHKNHNELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDALLKLKKN-GMTIVIVSHSIKQVQRVANLVYLFDNGTVVELLEPDKLHQAKHPIALRFLQIAG FtSTOL2 ------PQKIQQP------------MAPSLSFQEESREHLLSVDEEAGDGDHRGVKFEVRDLVKESLT-GSTILDKVNVDIPRASIVGIIGPSGSGKSTFLRSLN--RLWEPPVGSVFLDGQDICQMDVLTLRRRVGMLFQLPALFEGTVADNVRYGPKLRGKKLSDQEVYKFLSLADLDASFYNKNHNELSIGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIESVLLKLKNSVGMTIVMVSHSIKQIQRIADVVCLLVNGSVVEVLKPEQLSEAKHPMALTFLQLSS 'CAN70271(Vitis vinifera)' -----------------------------------------------------KPKFRVRNLIKVSES-GEAILRGIDVDVPKGAIVGVIGPSGSGKSTLLRVLN--RLWEPPSGTVYLDGTDIRELDVLGLRRKVGMLFQLPVLFEGTVADNIRYGPQLRGKKLTDNEVLKLLTLADLDSSFMKKTGGELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVIVKLKKSRGMTIVMVSHSIKQIQRIADRVCLLVDGEITEVLEPDKLSEARHPMALRFLQLSS 'XP_002325227(Populus trichocarpa)' -------------------------------------------------KDGAEAKFRIRNLTKVSDA-GVPILNGINMDIPKGMIVGIIGPSGSGKSTVLRALN--RLWEPPSGTVFLDGHDVKDLDVLGHRRKVGMLFQLPALFDGTVADNIRYGPQLKGKKLTDDEVYKLLSLADLDSSFYKKTSNELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKQRGLTVVIVSHSIKQIQRIADVVCLLVNGEIVEVLKPDDLSEAKHPMAQRFLQLG- 'XP_006366268(Solanum tuberosum)' --------------------------------------------DIKGAAET---KIEIRGLNKVSDK-GDSILKSVRVDIPRGVIMGIIGPSGSGKSTILRALN--RLWEPPKNTVFLDGTDICDLDVLCLRRKVGMLFQLPVLFEGTVADNIRYGPKLKGKKLSDNEVYKLLTLADLDSSFFYKSGGELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLRKDQMMTIVIVSHSIKQIQRIADIVCLLVDGEIVEIIKPDQLSEAKHPMALRFLQLS- AtSTAR1 ----------------------------MPSLWSNESDGSLREHLVDVVVSGSEPKIRVHDLTRVADD-GSRILKGVTIDIPKGMIVGVIGPSGSGKSTFLRSLN--RLWEPPESTVFLDGEDITNVDVIALRRRVGMLFQLPVLFQGTVADNVRYGPNLRGEKLSDEEVYKLLSLADLDASFAKKTGAELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTENIEDVIVKLKKQRGITTVIVSHSIKQIQKVADIVCLVVDGEIVEVLKPSELSHATHPMAQRFLQLSS 'EMT05468(Aegilops tauschii)' ------------------------------------------------------------------------------------------------------------------------------MDVLALRRKVGMLFQLPAMFDGSVGDNVRYGPQLRGKKLSEAEVKSLLSLSDLDPALSSRPASELSVGQAQRVALARPLANDPEVLLLDEPTSALDPISTQNIEEAIVRLKTARGLTTVIVSHSVKQIQRIADLVCLVVDGEVVEVLAPSALSEAKHPMARRFLELSS 'XP_004966143(Setaria italica)' -------------------------------------------------------KIRVR-ELRRQAAGGQEILRGVDLDVPRGVVMGVIGPSGSGKSTLLRALN--RLWEPAPGAVLLDGADICGLDVRTLRRRVGMLFQQPAMFEGTVAYNVRYGPKLRGKELTEAEVQNLLNLADLDPAMSSKPATELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDTIVRLNKTRGLTAVIVSHSVKQIQRIADLVCLLVAGEIVEVLPPSELSSAKHPMARRFLELS- 'EMS52544(Triticum uraatu)' ---------------------------------------------------------------------------------------------------------------------------------------------------GTVADNVRYGPRLRGETLTDAQVEELLGLSDLDPALASRPASELSVGQAQRVALARTLANDPEVLLLDEPTSALDPISTQNIEEAIVRLKKARGITTVIVSHSVRQIQRIADLVCLVVDGVVVEVLPPSDLSQAKHLMARRFLELS- OsSTAR1 MRIARIPTSIPPHLRLPLDLSAVSPMGSASEHDVREHLLDVDGVGEEGAAAAAGPKIRVRGLTRRSEARGEEILRGVDLDVPRGVVVGVIGPSGSGKSTLLRALNRLRLWEPAPGAVLLDGVDICGIDVLALRRKVGMLFQLPAMFDGTVADNVRYGPQLQGKKLTDAEVQSLLSLADLDPALCSKPASELSVGQAQRVALARTLANDPEVLL-DEPTSALDPISTQNIEEAIVRLKKTRGLTTVMVSHSVKQIQRIADLVCLLVAGEVVEVLPPSELSEAKHPMAR-FLELS- ; END; BEGIN TAXA; TITLE 'Fagopyrum tataricum FRDL3-ike genes'; DIMENSIONS NTAX=14; TAXLABELS FtFRDL1 FtFRDL2 OsFRDL1 OsFRDL4 Os12g0106600 Os09g0548300 Os10g0206800 Os02g0122200 AtMATE AtFRD3 At2g38330 At4g38380 At2g21340 At4g39030 ; END; BEGIN CHARACTERS; TITLE FRD3; LINK TAXA = 'Fagopyrum tataricum FRDL3-ike genes'; DIMENSIONS NCHAR=676; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX FtFRDL1 -------------------------------------------------------------------------------------MAEKVG------------------------------------FIVAQKRKKNPLFVLFKDARMVFQFDELGKEIAQIALPAALALAADPIASLVDTAFIGHIGPIELAAVGVSIALFNQVSRIAIFPLVS----ITTSFVAEEDAKAM------AKANLQVKHESEDLEMASVCLNDETEELIPRADSEEIDQESKTET--FDIDRP---------EHHKRHIPSASSALIIGTVLGIFQAIFLIFLAKPLLNYMGIKSDSPMLHPAQQYLKLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATIAGDGTNIILDPIFIFVFRMGVSGAAIAHVISQYLISAILFWKLTQQ--VDLLPPRFKDLQFERFLKNGFLLLMRVVAATFCVTLAASMAAHEGPTPMAAFQVCLQVWLTTSLLADGLAVAGQAILASAFA--NSDYEKAKATASRVLQLGFILGLVLAIMLGFGLQFGAKLFTKDDNVLRLISIGIPFVALTQPINALAFVFDGINFGASDFLYSGYSMVTVSLFSILCLLVLSLR-HGFVGIWFALTIFMSLRAFAGFLRIGTGSGPWKFLS------------- FtFRDL2 -------------------------------------------------------------------------------------MEDHQG------------------------------------GLQESHSKMIPCSVVFKDIRDVFKMDELGSEIIQIALPAALALAADPIASLIDTAFIGHLGPVELAAVGVSIAIFNQASKITIFPLVS----ITTSFVAEEDTFDK------MTVEDD------------EDKRVQGMEN------------------------------------QRRHIPSASTSIIIGVFLGLFQAFFLVIGAKPLLSVMGVKSDSPMFKPAHKYLTLRSLGSPAVLLSLAMQGVFRGFKDTKTPLYATVVGDLSNIILDPILIYVCHMGVSGAAIAHVISQYLMCCILLWRLMKK--VDLVPPTIKALQFKRFLKNGFLLLARVIAVTLCVTLAASMAARLGSTPMASFQICLQVWMTSSLLADGLAVAAQALLATAFA--EKNHDKAIAAACRVIQMGFVLGLGLALLVGLGLHFGSTIFTKDVHVLHLITIGIPFVAATQPINSIAFVMDGVNFGASDFAYTAYSMVGVAIVSIASLVVLSKS-NGFVGIWIALAIYMALRAIAGVWRIGSTTGPWSFLRINR---------- OsFRDL1 -----------------------------------------------MAGLKKMEEVTAAAAAVAASSTAEKRAAAVVVPDAALTMNGAAGAEEKTAAAAAAP-----------------EDLP-APAALSGWPRRVGLYLFVMNIRSVFKLDELGSEVLRIAVPASLALAADPLASLVDTAFIGRLGSVEIAAVGVSIAIFNQVSKVCIYPLVS----VTTSFVAEEDAIISKCIE--ENSSQDLEKAS------PVDSETNNLPVSGPDKVECVNSCIPTECTNPSDQG-----------CKRKYIPSVTSAVIVGSFLGLLQAVFLVFSAKFVLNIMGVKNDSPMLRPAVRYLTIRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVVGDAANIILDPILMFVCHMGVTGAAVAHVISQYLITMILLCRLIRQ--VDVIPPSLKSLKFGRFLGCGFLLLARVVAVTFCVTLASSLAARHGPTIMAAFQICCQLWLATSLLADGLAVAGQAVLASAFA--KNDKGKVVVATSRVLQLSIVLGMGLTVVLGVGMKFGAGIFTKDIDVIDVIHKGIPFVAGTQTINSLAFVFDGINFGASDYTYSAYSMVGVAAISIPCLVYLSAH-NGFIGIWIALTIYMSLRTIASTWRMGAARGPWVFLRK------------ OsFRDL4 -----------------------------------------------MQIDELSNTCMARSSSAPESMEADHQLTATVTAAASGDMPVTEQQQQKQMVAVAAPPATENADAAGGGGGDNGDHLPPTATSLLGGARRTGLHLFVLNARSALRLDELGAEVLRIAVPASLALTADPLASLIDTAFIGRIGSVEIAAVGVAIAVFNQVMKVCIYPLVS----VTTSFVAEEDAILSKGAAGADDDNDDGHDAKGHGASAAAVADPEKQQVVGVDSAETNGAEVSTAAVRTTDDKKAAAAGVGVGKCRRRFVPSVTSALIVGAFLGLLQAVFLVAAGKPLLRIMGVKPGSPMMIPALRYLVVRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVTGDLANIALDPILIFTCRFGVVGAAIAHVISQYLITLIMLCKLVRK--VDVIPSSLKSLKFRRFLGCGFLLLARVVAVTFCVTLAASLAARHGATAMAAFQICAQVWLASSLLADGLAVAGQALLASAFA--KKDHYKVAVTTARVLQLAVVLGVGLTAFLAAGMWFGAGVFTSDAAVISTIHRGVPFVAGTQTINTLAFVFDGVNFGASDYAFAAYSMVGVAAVTIPCLVLLSSH-GGFVGIWIALAIYMSVRAFASTWRMGAARGPWKFLRK------------ Os12g0106600 ------MTATSPPMRSVAAAALVLTPTPTL------------NRLS-------FPFAHRHCPSTAAPRWRPARCRGKPAVEDVVHDDEEETWRRE------------------------------------ANPERKDGGEEMLGR-GWFMVDEIGMEILTIALPAVLALAADPITALIDTAFVGHVGSTELAAVGVSISIFNLVSKLLNVPLLN----VTTSFVAEQQAVDA------------------------DYNSSVENSHIGEEISISQEKAGE----------------------QRKFLPAVSTSLALAAGIGLMETVALILGSGTLLDIVGVPVDSPMRIPAEQFLTLRAYGAPPVIVALAAQGAFRGFMDTKTPLFAVVAGNLVNALLDAIFIFPLGLGVSGAALATVTSEYLTAFILLWKLNSK--IVLFSWNIVSGDIIRYLKSGALLIARTIAVVLTFTVSTSLAAREGSVPMAGYEICLQVWLTISLLNDALALAGQALLASEYA--KGNYKKARIVLYRVLQIGGVTGAALSTTLLLGFGYLSMLFTDDAAVLDVAQTGVWFVTVSQPINAVAFVMDGLYYGVSDFAFVAYSTLFAGAISSAVLLVAAPK-FGLGGVWAGLTLFMSLRAIAGFWRLGSKGGPWKIIWSETE--------- Os09g0548300 ME----LAGGGTGVVRQRAEPLGAGLLLRGGGRSVGGGGIGCARRATLRGLALSPLARRAVSAAGGHFLPRRAVRAAAAAGDGGFYGEEDAASDQP-------------------------------FPARASPSDDANDSTAVRSLGGDHPGEIKKELLNLALPAIVGQAIDPVAQLLETAYIGRLGPVELASAAVGVSVFNIISKLFNIPLLS----ITTSFVAEDVARHDS-----------------------DQFTSEGNM------SSESGG--------------------------RKRLPSISSAILLAAAIGVIEASALILGSEILLSIMGVSHASTMHSPAKLFLSLRALGAPAVVVSLAIQGIFRGLKDTKTPLLYSGLGNISAVLLLPFLVYSLNLGLNGAALATIASQYLGMFLLLWSLSKR--AVLLPPKIEDLDFVGYIKSGGMLLGRTLSVLITMTLGTAMAARQGTIAMAAHQICLQVWLAVSLLSDALAVSAQALIASSFA--KLDYEKVKEVTYYVLKIGLLVGAALALLLFASFGRIAELFSKDPMVLQIVGSGVLFVSASQPINALAFIFDGLHFGVSDFSYSASSMITVGAISSLFLLYAPKV-FGLPGVWAGLALFMGLRMTAGFLRLGSRAGPWWFLHQKEPTYKLHSSTC Os10g0206800 -------------------------------------------------------------------------MNGESLLDRSSSADAAMN------------------------------------DAVPGHRHHHPLSVFLRDARLAFRWDELGREIMGIAVPGALALMADPVASLVDTAFIGHIGPVELAAVGVSIAVFNQVSRIAIFPLVS----VTTSFVAEEDATSS------DREKYEINGENE-----FNVSDSEMEELVSHEEASAAPSKSSFETD-SSDVKI---------EHKRKNIPSVSTALLLGGVLGLLQALLLVICAKPLLGYMGVKQGSAMLMPALKYLVVRSLGAPAVLLSLAMQGVFRGLKDTKTPLYATVAGDATNIVLDPIFMFVFQYGVSGAAIAHVISQYFIASILLWRLRLH--VDLLPPSFKHMQFSRFLKNGFLLLARVIAATCCVTLSASMAARLGSVPMAAFQICLQIWLASSLLADGLAFAGQAILASAFA--RQDHSKAAATASRILQLGLVLGLLLSIFLGIGLRLGSRLFTDDQDVLHHIYLGIPFVSLTQPINALAFVFDGINYGASDFGYAAYSMILVAIVSIIFIVTLASY-NGFVGIWIALTVYMSLRMLAGFLRIGTARGPWTFYAAQRMHSHEVVGLC Os02g0122200 ----------------MSAHLRLLSAAPLPALLPTRRLPAVPTPALAARAARLVLSRPLTEPQPPR------LPRGAAARCRGVAVAGADG------------------------------------------------DEPAAAAAGTAGLWEQVRDIVVFAGPALGLWICGPLMSLIDTMVIGQTSSLQLAALGPGTVFCDYLCYIFMFLSIATSNMVATSLAKKDE---------------------------------------------------------------------------ELAQHQVSMLLFVALTCGLGMFLFTKLFGTQVLTVFTGSGNYDIISAANTYAQIRGFAWPAVLVGLVAQSASLGMKDSWGPLKALAAASVINGVGDLLLCSVCGYGIAGAAWATMVSQIVAAFMMMQNLNKRGFRAFSFTIPSSSELLQIFEIAAPVFITMTSKVAFYALLTYSATSMGAITLAAHQVMVNVLCMCTVWGEPLSQTAQSFMPELIYGAKCNLMKARMLLKSLVMIGAITGTTVGAVGTLVPWLFPSLFTNDFMVVQQMHKVLIPYFCALLVTPSVHSLEGTLLAGRDLRFLSQSMGACFGIGTFLLMV------------------------------------------------------ AtMATE -------------------------------------------------------------------------------------MMSEDG------------------------------------YNTDFPR--NPLYIFFSDFRSVLKFDELGLEIARIALPAALALTADPIASLVDTAFIGQIGPVELAAVGVSIALFNQVSRIAIFPLVS----ITTSFVAEEDACSS------QQD--TVRDHKECIEIGINNPTEETIELIPEKHKDSLSDEFKTSSSIFSISKP---------PAKKRNIPSASSALIIGGVLGLFQAVFLISAAKPLLSFMGVKHDSPMMRPSQRYLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFATVIGDVTNIILDPIFIFVFRLGVTGAATAHVISQYLMCGILLWKLMGQ--VDIFNMSTKHLQFCRFMKNGFLLLMRVIAVTFCVTLSASLAAREGSTSMAAFQVCLQVWLATSLLADGYAVAGQAILASAFA--KKDYKRAAATASRVLQLGLVLGFVLAVILGAGLHFGARVFTKDDKVLHLISIGLPFVAGTQPINALAFVFDGVNFGASDFGYAAASLVMVAIVSILCLLFLSST-HGFIGLWFGLTIYMSLRAAVGFWRIGTGTGPWSFLRS------------ AtFRD3 -------------------------------------------------------------------------------------MTETGD------------------------------------DLATVK-KPIPFLVIFKDLRHVFSRDTTGREILGIAFPAALALAADPIASLIDTAFVGRLGAVQLAAVGVSIAIFNQASRITIFPLVS----LTTSFVAEEDTMEK------MKEEANKANLVHAETILVQDSLEKGISSPTSNDTNQPQQPPAPDTKSNSGNKSN--------KKEKRTIRTASTAMILGLILGLVQAIFLIFSSKLLLGVMGVKPNSPMLSPAHKYLSIRALGAPALLLSLAMQGIFRGFKDTKTPLFATVVADVINIVLDPIFIFVLRLGIIGAAIAHVISQYFMTLILFVFLAKK--VNLIPPNFGDLQFGRFLKNGLLLLARTIAVTFCQTLAAAMAARLGTTPMAAFQICLQVWLTSSLLNDGLAVAGQAILACSFA--EKDYNKVTAVASRVLQMGFVLGLGLSVFVGLGLYFGAGVFSKDPAVIHLMAIGIPFIAATQPINSLAFVLDGVNFGASDFAYTAYSMVGVAAISIAAVIYMAKT-NGFIGIWIALTIYMALRAITGIARMATGTGPWRFLRGRSSSSSS----- At2g38330 --------------MAAVATSFCFSPHRSP------------SRFG-------NPNSS---------IRRTIVCKSSPRDESPAVSTSSQRPEKQ------------------------------------QNPLTSQNKPDHDHK-PDPGIGKIGMEIMSIALPAALALAADPITSLVDTAFVGHIGSAELAAVGVSVSVFNLVSKLFNVPLLN----VTTSFVAEEQAIAAK-----------------------DDNDSIETS--------------------------------------KKVLPSVSTSLVLAAGVGIAEAIALSLGSDFLMDVMAIPFDSPMRIPAEQFLRLRAYGAPPIVVALAAQGAFRGFKDTTTPLYAVVAGNVLNAVLDPILIFVLGFGISGAAAATVISEYLIAFILLWKLNEN--VVLLSPQIKVGRANQYLKSGGLLIGRTVALLVPFTLATSLAAQNGPTQMAGHQIVLEIWLAVSLLTDALAIAAQSLLATTYS--QGEYKQAREVLFGVLQVGLATGTGLAAVLFITFEPFSSLFTTDSEVLKIALSGTLFVAGSQPVNALAFVLDGLYYGVSDFGFAAYSMVIVGFISSLFMLVAAPT-FGLAGIWTGLFLFMALRLVAGAWRLGTRTGPWKMLWSAPEKPE------ At4g38380 MESSRVVVGGGLPLANRRNSSFAKPKIQQG-------TFLPLSRINNVSAPQKCSLHTNPNPMFP--FVTRRKSQTNPDCG-VVKLGEEDDS---------------------------------------CSSLDKLPEVNGVHT-GVARPVDIKRELVMLSLPAIAGQAIDPLTLLMETAYIGRLGSVELGSAGVSMAIFNTISKLFNIPLLS----VATSFVAEDIAKIAA-----------------------QDLASEDSQ------SDIPSQGLP----------------------ERKQLSSVSTALVLAIGIGIFEALALSLASGPFLRLMGIQSMSEMFIPARQFLVLRALGAPAYVVSLALQGIFRGFKDTKTPVYCLGIGNFLAVFLFPLFIYKFRMGVAGAAISSVISQYTVAILMLILLNKR--VILLPPKIGSLKFGDYLKSGGFVLGRTLSVLVTMTVATSMAARQGVFAMAAHQICMQVWLAVSLLTDALASSGQALIASSAS--KRDFEGVKEVTTFVLKIGVVTGIALAIVLGMSFSSIAGLFSKDPEVLRIVRKGVLFVAATQPITALAFIFDGLHYGMSDFPYAACSMMVVGGISSAFMLYAPAG-LGLSGVWVGLSMFMGLRMVAGFSRLMWRKGPWWFMHTSDKRLA------ At2g21340 ----------------MQIQCKTLTFT-VSSIPCNPKLPFPSSLTLRSWNPSFPSFRSSAVSGPKSSLKLNRFLRNCASTNQELVVDGETGNGSISELQGDAA-----------------------NGSISPVEVEAEVEEVKVDDLATQSIWGQMKEIVMFTGPAAGLWLCGPLMSLIDTAVIGQGSSLELAALGPATVICDYLCYTFMFLSVATSNLVATSLARQDK---------------------------------------------------------------------------DEVQHQISILLFIGLACGVTMMVLTRLFGSWALTAFTGVKNADIVPAANKYVQIRGLAWPAVLIGWVAQSASLGMKDSWGPLKALAVASAINGVGDVVLCTFLGYGIAGAAWATMVSQVVAAYMMMDALNKKGYSAFSFCVPSPSELLTIFGLAAPVFITMMSKVLFYTLLVYFATSMGTNIIAAHQVMLQIYTMSTVWGEPLSQTAQSFMPELLFGINRNLPKARVLLKSLVIIGATLGIVVGTIGTAVPWLFPGIFTRDKVVTSEMHKVIIPYFLALSITPSTHSLEGTLLAGRDLRYISLSMTGCLAVAGLLLMLLSNGGFGLRGCWYALVGFQWARFSLSLFRLLSRDGVLYSEDTSRY-AEKVKAA- At4g39030 ----------------MLIKSQRLTLF-SPLLSKTRRIPVNSHQTLVAES-VITRRTLGAITATPS------FHKNPVVIRRRIKLERVTRNCVRIDRE---------------------------------IDEEEEEEEKERGDLVKQSIWEQMKEIVKFTGPAMGMWICGPLMSLIDTVVIGQGSSIELAALGPGTVLCDHMSYVFMFLSVATSNMVATSLAKQDK---------------------------------------------------------------------------KEAQHQISVLLFIGLVCGLMMLLLTRLFGPWAVTAFTRGKNIEIVPAANKYIQIRGLAWPFILVGLVAQSASLGMKNSWGPLKALAAATIINGLGDTILCLFLGQGIAGAAWATTASQIVSAYMMMDSLNKEGYNAYSFAIPSPQELWKISALAAPVFISIFSKIAFYSFIIYCATSMGTHVLAAHQVMAQTYRMCNVWGEPLSQTAQSFMPEMLYGANRNLPKARTLLKSLMIIGATLGLVLGVIGTAVPGLFPGVYTHDKVIISEMHRLLIPFFMALSALPMTVSLEGTLLAGRDLKFVSSVMSSSFIIGCLTLMFVTRSGYGLLGCWFVLVGFQWGRFGLYLRRLLSPGGILNSDGPSPYTVEKIKSI- ; END; BEGIN TAXA; TITLE 'Fagopyrum tataricum ALS1-like gene'; DIMENSIONS NTAX=12; TAXLABELS 'XP_004236062(S.lycopersicum) ' 'AAG49002(H.vulgare) ' OsALS1 'NP_001151774(Z.mays) ' 'XP_002533538(R.communis) ' AtALS1 'EOA17806(C.rubella)' 'XP_002277220(V.vinifera ) ' FtALOL1 FtALOL2 'NP_013289(S.cerevisiae)' 'NP_015053(S.cerevisiae)' ; END; BEGIN CHARACTERS; TITLE ALS1; LINK TAXA = 'Fagopyrum tataricum ALS1-like gene'; DIMENSIONS NCHAR=782; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX 'XP_004236062(S.lycopersicum) ' -----------------MDCQLGVQG-------HGFG-NARTPLLDRPALGRKRND-AGDGQLGDLEHGDSVPAPNVG--------------------------FGRVISLAKPEAGSLVLATIALLFAATSSILIPKFGGKIIDIVSG----DIQTPEQKSEALNAVKNTILEIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLLSHLVHQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLATAFIGLGFMFQTSWKLTLLSLAVVPVISVAVRRFGRYMRELSHKTQAAAAVASSIAEETFGAIRTVRSFAQEDYEISRYSEKVDETLNLGLGQAKVVGLFSGSLSAASTLSVIVVVIYGATLTIQGAMTPGALTSFILYSLT-----VGSSVSGLSGLYTVAMKAAGASRRVFQILDRTSSMPKSGDLCPMGDQAAEVELDDVWFAYPSRPSHMVLKGITMKLQSGSKVALVGPSGGGKTTIANLIERFYDPVKGKILLNGVSLVEISHKHLHHKVSIVSQEPVLFNCSIEENIAYGLGG--KASSEDIEKAAKMANAHEFVSKFPEKYQTHVGERGLRLSGGQKQRIAIARALLMNPTILLLDEATSALDAESEYLVQDAMDSLMQG--RTVLVIAHRLSTVKSANTVAVIS-DGQIVESGTHDDLLNK-NGIYTALVRR--------------------------QLQGYKSDS--------------------------------------------------- 'AAG49002(H.vulgare) ' -----------------MVRELRINTAPR---------GNRVPLLNNGETSR---------ILSDLEEGSNVQAANVG--------------------------FCRVIKLAKHDAGKLVFATIALLVASLSNLLVPKYGGKIIDIVSR----DVQRPEDKAQALADVNGTILYIVLIVVTGSVCTALRAWLFNSASERVVARLRQDLFSHLINQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLTTTAIGLGFMFSTSWKLTLLALVIVPVISVAVRKFGRFLRELSHQTQAAAAVASSIAEESFGAIRTVRAFAQEPHEISRYGGKVNETLKLGLKQAKVVGLFSGGLNAASTLSVVVVVIYGANLTINGYMTTGSLTSFILYSLT-----VGSSVSALSGLYTTVMKASGASRRVFQLLDRVSSMTNTGDKCPKNENEGEVELDDVWFAYPSRPSHMILKGITLKLAPGSKVALVGPSGGGKTTIANLIERFYDPLKGRILLNGVPLVEISHQYLHQKVSIVSQEPTLFNCSIEENIAYGLEG--KASSADVENAAKMANAHDFICSFPDQYKTVVGERGIRLSGGQKQRVAIARALLMNPRVLLLDEATSALDAESEYLVQDAMDSLMKG--RTVLVIAHRLSTVKSADTVAVIS-EGQIVESGTHDELLER-DGIYTALVKR--------------------------QLQLPKFEGTANG----TAEVEPSSNGQ-------------------------------- OsALS1 -----------------MGKNLRIKTG------------NRAPLLAQGETSR---------ALSDLEEGSNVQPENVG--------------------------FCRVIKLARHDAGKLVIATMALLVASLSNILVPKYGGKIIDIVSR----DVRRPEDKAQALDDVTGTILYIVIIVVTGSVCTALRAWLFNSASERVVARLRKDLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNITTTSIGLGFMFATSWKLTLLALVIVPVISIAVRKFGRFLRELSHQTQAAAAVASSIAEESFGAIRTVRSFAQESHEVLRYGEKVDETLKLGLKQAKVVGMFSGGLNAASTLSVVIVVIYGANLTINGYMTTGSLTSFILYSLT-----VGSSVSALSGLYTTVMKASGASRRVFQLLDRVSSMANSGDRCPTNENDGEVELDDVWFAYPSRPSHMILKGITLKLTPGSKVALVGPSGGGKTTIANLIERFYDPLKGRILLNGVPLPEISHQFLHRKVSIVSQEPVLFNCSIEENIAYGLEG--KASSADVENAAKMANAHNFICSFPDQYKTVVGERGIRLSGGQKQRVAIARALLMNPRVLLLDEATSALDAESEYLVQDAMDSLMKG--RTVLVIAHRLSTVKSADTVAVIS-DGQIVESGTHDELLSR-DGIYTALVKR--------------------------QLQGPRFEGTSNA----TAEIEPISNGQ-------------------------------- 'NP_001151774(Z.mays) ' -----------------MGKNMRIKTAPK---------ANRVPLLGDGETSR---------ALSDLEEGSDVQPANVG--------------------------FCRVIKLAKHDAGKLVLATAALLVASLSNLLVPKYGGKIIDIVSR----DVRRPEDKAQALEDVKGTILYIVTIVLVGSVCTALRAWLFNSASERVVARLRKDLFSHLINQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNVTTTAIGLGFMFSTSWKLTLLALVIVPVISVAVRRFGRFLRELSHQTQAAAAVASSIAEESFGAIRTVRSFAQEYHEISRYGEKVEETLKLGLKQAKVVGLFSGGLNAASTMSVVIVVIYGANLTINGYMTTGSLTSFILYSLT-----VGSSVSALSGLYTTVMKASGASRRVFQLLDRVSSMTNSGDKCPINEKDGEVELDDVWFAYPSRPSHMILKGITLKLAPGSKVALVGPSGGGKTTIANLIERFYDPLKGRILLNGVPLAEISHQYLHSKVSIVSQEPTLFNCTIEENIAYGLEG--TTNFADVESAAEMANAHNFICGFPDQYKTVVGERGIRLSGGQKQRIAIARALLMNPRVLLLDEATSALDAESEYLVQDAMDSLMKG--RTVLVIAHRLSTVKSADTVAVIS-DGLIVESGTHDELLDR-DGIYTALVKR--------------------------QLQGPKFEATSSISEASEIEAEPSSNGQ-------------------------------- 'XP_002533538(R.communis) ' -----------------MGKKQNLD-WTSRS--ISSSGSERVSLLSKEARRKANEDQSPDGSPNDLELGDGVEAANVG--------------------------FGRVFSLAKPDAGKLAVGTIALLIASTSSLLIPKYGGMIIDIVSR----DIKSPEEQSEALDAVKNTILDIVLIVVIGSVCTALRAWLFASASERVVARLRKNLFSHLINQEIAFFDVTRTGELLSRLSEDTQVIKNAATTNLSEALRNVTTALIGVAFMFTSSWKLTLLALAVVPLISIAVRKFGRYVRDLSHATQAAAAVAASIAEESFGAIRTVRSFAQESYTISRYSEKVDETLKLGLRQARVVGLFFGGLNAASTLSVIIVVVYGAYLTIIGSMTAGSLTSFILYSLT-----VGSSVSSLSGLYTTAMKAAGASRRVFQLLDRISSMPKSGDKCPIIDPDGDVELDDVWFAYPSRPSHMVLKGITLKLNPGSKVALVGPSGGGKTTIANLIERFYDPLKGKILLNGVPLVEISHEYLHSKVSIVSQEPVLFNCSIEENIAYGFNG--KASSSDVEAVAKMANAHEFIDKFPEKYQTVVGERGLRLSGGQKQRVAIARALLMNPKLLLLDEATSALDAESEYLVQDAMDSLMKG--RTVLVIAHRLSTVKSADIVAVIS-DGQITESGTHEELLRK-DGIYTALVRR--------------------------QLQEPNSAL--------------------------------------------------- AtALS1 -----------------MGNKKLLTGGSSKT--HGSGSSYRDPLLQNQEDKPKAN--GSENGLNDLEHG-VVEAANVG--------------------------FGRVFALAKPDAGKLVIGTIALLIGSTTNLLVPKFGGMIIDIVSR----DVKTPEQQTESLIAVRNAVVIILLIVVIGSICTALRAWLFNSASERVVARLRKDLFRHLMHQEIAFYDVTKTGELLSRLSEDTQIIKNAATTNLSEALRNVTTALIGVGFMFTSSWKLTLLALVVVPVISVAVKQFGRYLRELSHTTQAAAAVAASIAEESFGAVRTVRSFAKESYMVSQYSKKVDETLKLGLKQAVLVGLFFGGLNAAFTLSVITVVSYGAYLTIYGSMTVGALTSFILYSLT-----VGSSVSSLSSLYTTAMKAAGASRRVFQILDRVSSMSSSGDKCPVGNPDGDVELNDVWFAYPSRPSHMILKGISLRLTPGSKVALVGPSGGGKTTIANLIERFYDPLKGKILLNGVSLMEISHQYLHKQISIVSQEPILFNCSVEENIAYGFDG--EASFTDIENAAKMANAHEFIEAFPDKYNTVVGERGLRLSGGQKQRIAIARALLTNPSVLLLDEATSALDAESEYLVQDAMDSLMAG--RTVLVIAHRLSTVKTADCVAVIS-DGEVAEKGTHDELLSL-NGIYTNLVKR--------------------------QLQSSSSVTTL------------------------------------------------- 'EOA17806(C.rubella)' -----------------MGNKKLLTGGSSKG--YGSGSSYRDPLLQNQ-DKTKAN--GSENGQNDLEHG-VVEAANVG--------------------------FGRVFALAKPDAGKLVIGTIALLIGSTTNLLVPKFGGMIIDIVSR----DVKTPEQQTESLIAVRNSVVIILLIVVIGSLCTALRSWLFNSASERVVARLRKDLFKHLMHQEIAFYDVTKTGELLSRLSEDTQIIKNAATTNLSEALRNVTTALIGVGFMFTSSWKLTLLALVVVPVISVAVKQFGRYLRELSHTTQAAAAVAASIAEESFGAIRTVRSFAKESYMVSQYSEKVDETLKLGLKQAVLVGLFFGGLNAAFTLSVITVVSYGAYLTIYGSMTVGALTSFILYSLTDSVLAVGSSVSSLSSLYTTAMKAAGASRRVFQILDRVSSMADSGDKCPVGNPDGDVEIDDVWFAYPSRPSHMILKGISLRLTPGSKVALVGPSGGGKTTIANLIERFYDPLKGKILLNGVSLMEISHQYLHKQISIVSQEPILFNCSVEENIAYGFDG--EASLSDVENAAKMANAHEFIEAFPDKYKTVVGERGLRLSGGQKQRIAIARALLTNPSVLLLDEATSALDAESEYLVQDAMDSLMAG--RTVLVIAHRLSTVKTADCVAVIS-DGEVAEKGTHDELLSL-NGIYTNLVKR--------------------------QLQSSSSVTNL------------------------------------------------- 'XP_002277220(V.vinifera ) ' -----------------MASG-----------------NETAPPLNEVERQN---------ANDDLEHGLAYQAAKVG--------------------------FFRVFSLAKPEAGKLIVATIALLVASTSIVMLPKYGGMVIDIVSR----DIRTPEQQSEALTAVKNAALAVVLMVVLGSLCVAVREWLFASVSERIVAHLRKDLFSHLINQDIAFFDVTPTGELLSRLSEDSQIIKNVATSNLSSALTSITIVFIGLGFMFSSSWKLTLLVLALVPVVSVAAHVFGRYLRELSHKTQAAAAVACSMAEESFGAIQTVRSFAQEGYAISSYSEKVHETLKLALRQSKLVALFYGGINAVFTLSIVIVVVYGASLTIARSMTAGSLASFILYSLT-----VGISMLSLFGLYTTAMKAAGASRRVFQLLDRVSPMPISGHKCPLGNPDGDVELDDIWFAYPSRPSHMILKGISLKLRPGSKVALVGPSGGGKTTIASLIERFYDPLKGKILLNGVPLVEISHKYLHKKISIVSQEPVLFNCSVEENIAYGFDG--KASSSEIENAAKMANAHDFIANFPEKYRTVVGERGLRLSGGQKQRIAIARALLMDPRVLLLDEATSALDAESEYLVQDAMESLMRG--RTVLVIAHRLSTVKTADIVAVIC-DGRIAQSGSHEELLSK-NGIYTGLVKR--------------------------QLQGPSTPH--------------------------------------------------- FtALOL1 -----------------MNFGGGGGGGGGGGGMHGFGGGERIPLLRR--EGRKRDDTLLNPSVTDLELGDAVPAANVG--------------------------FGRVISLAKPDAGKLIIATIALLIASTSSILIPKFGGKIIDIAAR----DMTKPEQKTEALNAVKSTILYIFLIVIVGSVCTALRAWLFYSSSERVVARLRKRLYSHLINQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTALIGLGFMFTTSWKLTLLALAVVPAISVAVRSFGRYLRELSHKTQAAAAAASSIAEESFGAIRTVRSFAQEEYEVEHYAEQVHETLDLGLKQAKLVGLFSGSLNAASTLSVIIVVIYGATLTINGAMTTGDLTSFILYSLT-----VGSSVSGLSGLYTVAMKAAGASRRVFQLLDRESSMQKAGDKCPLSAQDAEVQLDDVWFAYPSRPSHTVLKGITLKLETGSKVALVGPSGGGKTTIANLIERFYDPIKGRILINGVPLVEISHEHLHKKISIVSQEPTLFNCTIEQNIAYGLSG--KASITDIENAAKMANAHDFISKFPDKYQTHVGERGVRLSGGQKQRVAIARALLMDPKILLLDEATSALDAESEYLVQDAMDSLMKG--RTVLVIAHRLSTVKSANTVAVVS-DGQVVETGTHDELLKK-DGIYTALVRR--------------------------QLQQATKTEVI------------------------------------------------- FtALOL2 -----------------MGKNQHLD-WTAKS--IMSTGSERVPLLNKEVKRKKNSEQSADNNGTDVALGDVLPDTKVG--------------------------VCRVFSLAKPEGRKLAIGTVALLIASTTNLLVPKFGGIIIDIVSR----DIRTPEQQAEALQAVWNTILNIVLIVVIGSTCTAIRGWLFASASERVVARLRKELFSHLIQQEISFFDVTRTGELLSRLSEDTQIIKNAATTNFSEALRNLSTALIGLMFMFSSSWKLSLLALVVVPVILVSVRKFGRYLRELSHETQAAAAVSASIAEECFGAIRTVRSFARESYAISTYSEKVDDALTLGIRQARVVGLFFGGLNAASTLSVIIVVVYGAYLTITGSMTSGALTSFILYSLT-----VGSSISSLSGLYTTAMKAAGASRRVFQLLDRVSTMPTSGNKCPEGDVDGGVEWEWNWMMS------------------GLHILLGQPTWSSRASH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- 'NP_013289(S.cerevisiae)' MIVR---MIRLCKGPKLLRSQFASASALYSTKSLFKPPMYQKAEINLIIPHR----KHFLLRSIRLQSDIAQGKKSTKPTLKLSN---------ANSKSSGFKDIKRLFVLSKPESKYIGLALLLILISSSVSMAVPSVIGKLLDLASESDGEDEEGSKSNKLYGFTKKQFFTALGAVFIIGAVANASRIIILKVTGERLVARLRTRTMKAALDQDATFLDTNRVGDLISRLSSDASIVAKSVTQNVSDGTRAIIQGFVGFGMMSFLSWKLTCVMMILAPPLGAMALIYGRKIRNLSRQLQTSVGGLTKVAEEQLNATRTIQAYGGEKNEVRRYAKEVRNVFHIGLKEAVTSGLFFGSTGLVGNTAMLSLLLVGTSMIQSGSMTVGELSSFMMYAVY-----TGSSLFGLSSFYSELMKGAGAAARVFELNDRKPLIRPTIGKDPVSLAQKPIVFKNVSFTYPTRPKHQIFKDLNITIKPGEHVCAVGPSGSGKSTIASLLLRYYDVNSGSIEFGDEDIRNFNLRKYRRLIGYVQQEPLLFNGTILDNILYCIPPEIAEQDDRIRRAIGKANCTKFLANFPDGLQTMVGARGAQLSGGQKQRIALARAFLLDPAVLILDEATSALDSQSEEIVAKNLQRRVER-GFTTISIAHRLSTIKHSTRVIVLGKHGSVVETGSFRDLIAIPNSELNALLAE--------------------------QQDEEGKGGVIDLDN------------------------------SVAREV--------- 'NP_015053(S.cerevisiae)' MLNGRLPLLRLGICRNMLSRPRLAKLPSIRFRSLVTPSSSQLIPLSRLCLRSPAVGKSLILQSFRCNSSKTVPETSLPSASPISKGSARSAHAKEQSKTDDYKDIIRLFMLAKRDWKLLLTAILLLTISCSIGMSIPKVIGIVLDTLKTSSGSDFFDLKIP-IFSLPLYEFLSFFTVALLIGCAANFGRFILLRILSERVVARLRANVIKKTLHQDAEFFDNHKVGDLISRLGSDAYVVSRSMTQKVSDGVKALICGVVGVGMMCSLSPQLSILLLFFTPPVLFSASVFGKQIRNTSKDLQEATGQLTRVAEEQLSGIKTVQSFVAEGNELSRYNVAIRDIFQVGKTAAFTNAKFFTTTSLLGDLSFLTVLAYGSYLVLQSQLSIGDLTAFMLYTEY-----TGNAVFGLSTFYSEIMQGAGAASRLFELTDRKPSISPTVG-HKYKPDRGVIEFKDVSFSYPTRPSVQIFKNLNFKIAPGSSVCIVGPSGRGKSTIALLLLRYYNPTTGTITIDNQDISKLNCKSLRRHIGIVQQEPVLMSGTIRDNITYGLT--YTPTKEEIRSVAKQCFCHNFITKFPNTYDTVIGPHGTLLSGGQKQRIAIARALIKKPTILILDEATSALDVESEGAINYTFGQLMKSKSMTIVSIAHRLSTIRRSENVIVLGHDGSVVEMGKFKELYANPTSALSQLLNEKAAPGPSDQQLQIEKVIEKEDLNESKEHDDQKKDDNDDNDNNHDNDSNNQSPETKDNNSDDIEKSVEHLLKDAAKEANPIKITPQP ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = ART1) = unord: 1 - 563; TYPESET * UNTITLED (CHARACTERS = STAR2) = unord: 1 - 286; TYPESET * UNTITLED (CHARACTERS = STAR1) = unord: 1 - 294; TYPESET * UNTITLED (CHARACTERS = FRD3) = unord: 1 - 676; TYPESET * UNTITLED (CHARACTERS = ALS1) = unord: 1 - 782; END; BEGIN CODONS; CODESET * UNTITLED (CHARACTERS = ART1) = universal: 1 - 563; CODESET * UNTITLED (CHARACTERS = STAR2) = universal: 1 - 286; CODESET * UNTITLED (CHARACTERS = STAR1) = universal: 1 - 294; CODESET * UNTITLED (CHARACTERS = FRD3) = universal: 1 - 676; CODESET * UNTITLED (CHARACTERS = ALS1) = universal: 1 - 782; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = ART1) = 'Mk1 (est.)': 1 - 563; ProbModelSet * UNTITLED (CHARACTERS = STAR2) = 'Mk1 (est.)': 1 - 286; ProbModelSet * UNTITLED (CHARACTERS = STAR1) = 'Mk1 (est.)': 1 - 294; ProbModelSet * UNTITLED (CHARACTERS = FRD3) = 'Mk1 (est.)': 1 - 676; ProbModelSet * UNTITLED (CHARACTERS = ALS1) = 'Mk1 (est.)': 1 - 782; END; BEGIN TREES; Title ART1; LINK Taxa = 'Fagopyrum tataricum ART1-like genes'; TRANSLATE 1 FtARL1, 2 FtARL2, 3 OsART1, 4 AtSTOP1, 5 'BAN67816(N.tabacum)', 6 'XP_004250372(S.lycopersicum)', 7 'BAN67817( L.japonicus)', 8 'XP_002526844(R.communis)', 9 'EMT26835(A.tauschii) ', 10 'XP_003564719(B.distachyon) ', 11 'ACN25425(Z.mays)', 12 'AGS15193(T.aestivum)'; TREE ART1 = (((1,(2,3)),(4,(5,6))),((7,(8,9)),(10,(11,12)))); END; BEGIN TREES; Title STAR2; LINK Taxa = Fagopyrum_tataricum_STAR2_gene; TRANSLATE 1 FtSTAR2, 2 AtALS3, 3 OsSTAR2, 4 'XP_007027163(Theobroma cacao)', 5 'XP_002274040(Vitis vinifera)', 6 'NP_001146856(Zea mays)', 7 'XP_002440497(Sorghum bicolor)'; TREE STAR2 = (((1,(4,5)),2),(3,(6,7)))[% ] [% ] [% setBetweenBits = selected ]; END; BEGIN TREES; Title STAR1; LINK Taxa = 'Fagopyrum tataricum STAR1-like genes'; TRANSLATE 1 FtSTOL1, 2 FtSTOL2, 3 'CAN70271(Vitis vinifera)', 4 'XP_002325227(Populus trichocarpa)', 5 'XP_006366268(Solanum tuberosum)', 6 AtSTAR1, 7 'EMT05468(Aegilops tauschii)', 8 'XP_004966143(Setaria italica)', 9 'EMS52544(Triticum uraatu)', 10 OsSTAR1; TREE STAR1 = (((((1,2),4),(3,5)),6),(8,((7,9),10)))[% ] [% ] [% setBetweenBits = selected ]; END; BEGIN TREES; Title FRD3; LINK Taxa = 'Fagopyrum tataricum FRDL3-ike genes'; TRANSLATE 1 FtFRDL1, 2 FtFRDL2, 3 OsFRDL1, 4 OsFRDL4, 5 Os12g0106600, 6 Os09g0548300, 7 Os10g0206800, 8 Os02g0122200, 9 AtMATE, 10 AtFRD3, 11 At2g38330, 12 At4g38380, 13 At2g21340, 14 At4g39030; TREE ALS1 = ((((((2,9),7),(1,10)),(4,3)),((5,11),(12,6))),(8,(13,14)))[% ] [% ] [% setBetweenBits = selected ]; END; BEGIN TREES; Title ALS1; LINK Taxa = 'Fagopyrum tataricum ALS1-like gene'; TRANSLATE 1 'XP_004236062(S.lycopersicum) ', 2 'AAG49002(H.vulgare) ', 3 OsALS1, 4 'NP_001151774(Z.mays) ', 5 'XP_002533538(R.communis) ', 6 AtALS1, 7 'EOA17806(C.rubella)', 8 'XP_002277220(V.vinifera ) ', 9 FtALOL1, 10 FtALOL2, 11 'NP_013289(S.cerevisiae)', 12 'NP_015053(S.cerevisiae)'; TREE ALS1 = ((((((4,3),2),(1,9)),((5,10),(7,6))),8),(11,12))[% ] [% ] [% setBetweenBits = selected ]; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1417513923288; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 3343417058419930860; setID 1 7850830519939868980; setID 2 2526151722715157943; setID 3 5187368276325749016; setID 4 2758607828501481484; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 4252703464959549395; mqVersion 275; checksumv 0 3 1373720939 null getNumChars 563 numChars 563 getNumTaxa 12 numTaxa 12 short false bits 1048575 states 1048575 sumSquaresStatesOnly 3.9160121626027E13 sumSquares 3.9160121626027E13 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 5; mqVersion; setID 1 7505318810633102450; mqVersion 275; checksumv 1 3 1589321352 null getNumChars 286 numChars 286 getNumTaxa 7 numTaxa 7 short false bits 1048575 states 1048575 sumSquaresStatesOnly 1.9027113637697E13 sumSquares 1.9027113637697E13 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 5; mqVersion; setID 2 8846667642230029830; mqVersion 275; checksumv 2 3 2409530732 null getNumChars 294 numChars 294 getNumTaxa 10 numTaxa 10 short false bits 1048575 states 1048575 sumSquaresStatesOnly 1.2459776813706E13 sumSquares 1.2459776813706E13 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 5; mqVersion; setID 3 6477598490528268772; mqVersion 275; checksumv 3 3 2111325059 null getNumChars 676 numChars 676 getNumTaxa 14 numTaxa 14 short false bits 1048575 states 1048575 sumSquaresStatesOnly 5.7937332782055E13 sumSquares 5.7937332782055E13 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 5; mqVersion; setID 4 5368560031455793883; mqVersion 275; checksumv 4 3 215290265 null getNumChars 782 numChars 782 getNumTaxa 12 numTaxa 12 short false bits 1048575 states 1048575 sumSquaresStatesOnly 6.5074876041149E13 sumSquares 6.5074876041149E13 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 5; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 223; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1360 630; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #3343417058419930860 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTaxa #3343417058419930860; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1500.1417511301711.710600186594376160; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1137 563; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(((((7,8),4),((5,6),(1,2))),(11,(10,(9,12)))),3);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; makeTreeWindow #2526151722715157943 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.DefaultTrees.DefaultTrees; setAssignedID 1559.1417511716784.4825627377664420798; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1137 563; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(((((1,2),4),(3,5)),6),(8,((7,9),10)));'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; makeTreeWindow #5187368276325749016 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.DefaultTrees.DefaultTrees; setAssignedID 1588.1417512550553.1537610601618818307; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1137 563; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '((((((2,9),7),(1,10)),(4,3)),((5,11),(12,6))),(8,(13,14)));'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; makeTreeWindow #2758607828501481484 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.DefaultTrees.DefaultTrees; setAssignedID 1617.1417513660600.6747738824141559021; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1137 563; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '((((((4,3),2),(1,9)),((5,10),(7,6))),8),(11,12));'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; toggleShow consensusFrequency; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #4252703464959549395 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1137 563; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; showDataWindow #7505318810633102450 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1137 563; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; showDataWindow #8846667642230029830 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1137 563; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.ibeam; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; showDataWindow #6477598490528268772 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1137 563; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool scrollerRight; endTell; setTool scrollerRight; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; setColumnWidth 16; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;