#NEXUS [written Mon Mar 18 21:14:45 CST 2013 by Mesquite version 2.6 (build 486) at asus-PC/106.228.18.200] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=22; TAXLABELS Sophora_davidii_C1 Sophora_davidii_C10 Sophora_davidii_C11 Sophora_davidii_C12 Sophora_davidii_C13 Sophora_davidii_C14 Sophora_davidii_C15 Sophora_davidii_C16 Sophora_davidii_C17 Sophora_davidii_C18 Sophora_davidii_C19 Sophora_davidii_C2 Sophora_davidii_C20 Sophora_davidii_C21 Sophora_davidii_C22 Sophora_davidii_C3 Sophora_davidii_C4 Sophora_davidii_C5 Sophora_davidii_C6 Sophora_davidii_C7 Sophora_davidii_C8 Sophora_davidii_C9 ; END; BEGIN CHARACTERS; TITLE 'cpDNA haplotype matrix for beast analysis (with repeatitive regions)'; DIMENSIONS NCHAR=831; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX Sophora_davidii_C1 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATC Sophora_davidii_C10 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATC Sophora_davidii_C11 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATC Sophora_davidii_C12 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATC Sophora_davidii_C13 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATC Sophora_davidii_C14 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATC Sophora_davidii_C15 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATC Sophora_davidii_C16 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATC Sophora_davidii_C17 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATC Sophora_davidii_C18 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATC Sophora_davidii_C19 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATC Sophora_davidii_C2 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATC Sophora_davidii_C20 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATC Sophora_davidii_C21 TTGAAATCATAATAACCGATTTTGAGTCAATCGTCGAGATTGAAAGAATC Sophora_davidii_C22 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATC Sophora_davidii_C3 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATC Sophora_davidii_C4 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATC Sophora_davidii_C5 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATC Sophora_davidii_C6 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATC Sophora_davidii_C7 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATC Sophora_davidii_C8 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATC Sophora_davidii_C9 TTGAAATCATAATAACCGATTTTTAGTCAATCGTCGAGATTGAAAGAATC Sophora_davidii_C1 AATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATA Sophora_davidii_C10 AATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATA Sophora_davidii_C11 AATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATA Sophora_davidii_C12 AATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATA Sophora_davidii_C13 AATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATA Sophora_davidii_C14 AATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATA Sophora_davidii_C15 AATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATA Sophora_davidii_C16 AATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATA Sophora_davidii_C17 AATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATA Sophora_davidii_C18 AATAAAAAAAATGGAATATTTTTTAGTCAACATAAAAATAATAATAAATA Sophora_davidii_C19 AATAAAAAAAATGGAATATTTTTTAGTCAACATAAAAATAATAATAAATA Sophora_davidii_C2 AATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATA Sophora_davidii_C20 AATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATA Sophora_davidii_C21 AATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATA Sophora_davidii_C22 AATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATA Sophora_davidii_C3 AATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATA Sophora_davidii_C4 AATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATA Sophora_davidii_C5 AATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATA Sophora_davidii_C6 AATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATA Sophora_davidii_C7 AATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATA Sophora_davidii_C8 AATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATA Sophora_davidii_C9 AATAAAAAAA-TGGAATATTTTTTAGTCAACATAAAAATAATAATAAATA Sophora_davidii_C1 AGAATTCTATTATAAATT---------ATATTATAAT------------- Sophora_davidii_C10 AGAATTCTATTATAAATTT--------ATATTATAAT------------- Sophora_davidii_C11 AGAATTCTATTATAAATTT--------ATATTATAAT------------- Sophora_davidii_C12 AGAATTCTATTATAAATTT--------ATATTATAAT------------- Sophora_davidii_C13 AGAATTCTATTATAAATTT--------ATATTATAAT------------- Sophora_davidii_C14 AGAATTCTATTATAAATTT--------ATATTATAATTATAAATTATAGT Sophora_davidii_C15 AGAATTCTATTATAAATTT--------ATATTATAATTATAAATTATAGT Sophora_davidii_C16 AGAATTCTATTATAAATTT--------ATATTATAAT------------- Sophora_davidii_C17 AGAATTCTATTATAAATTT--------ATATTATAAT------------- Sophora_davidii_C18 AGAATTCTATTATAAATTT--------ATATTATAAT------------- Sophora_davidii_C19 AGAATTCTATTATAAATTT--------ATATTATAAT------------- Sophora_davidii_C2 AGAATTCTATTATAAATT---------ATATTATAAT------------- Sophora_davidii_C20 AGAATTCTATTATAAATTG--------ATATTATAAT------------- Sophora_davidii_C21 AGAATTCTATTATAAATTT--------ATATTATAAT------------- Sophora_davidii_C22 AGAATTCTATTATAAATTT--------ATATTATAAT------------- Sophora_davidii_C3 AGAATTCTATTATAAATT---------ATATTATAAT------------- Sophora_davidii_C4 AGAATTCTATTATAAATT-ATATTATTATATTATAAT------------- Sophora_davidii_C5 AGAATTCTATTATAAATT---------ATATTATAAT------------- Sophora_davidii_C6 AGAATTCTATTATAAATT---------ATATTATAAT------------- Sophora_davidii_C7 AGAATTCTATTATAAATTT--------ATATTATAAT------------- Sophora_davidii_C8 AGAATTCTATTATAAATTT--------ATATTATAAT------------- Sophora_davidii_C9 AGAATTCTATTATAAATTT--------ATATTATAAT------------- Sophora_davidii_C1 -----AGAATTCTTATTTATTTTATTTTATTAAACTTTATTTATTAGTTT Sophora_davidii_C10 -----AGAATTCTTATTTATTTTATT-----AAACTTTATTTATTAGTTT Sophora_davidii_C11 -----AGAATTCTTATTTATTTTATT-----AAACTTTATTTATTAGTTT Sophora_davidii_C12 -----AGAATTCTTATTTATTTTATT-----AAACTTTATTTATTAGTTT Sophora_davidii_C13 -----AGAATTCTTATTTATTTTATT-----AAACTTTATTTATTAGTTT Sophora_davidii_C14 ATAATAGAATTCTTATTTATTTTATT-----AAACTTTATTTATTAGTTT Sophora_davidii_C15 ATAATAGAATTCTTATTTATTTTATT-----AAACTTTATTTATTAGTTT Sophora_davidii_C16 -----AGAATTCTTATTTATTTTATT-----AAACTTTATTTATTAGTTT Sophora_davidii_C17 -----AGAATTCTTATTTATTTTATT-----AAACTTTATTTATTAGTTT Sophora_davidii_C18 -----AGAATTCTTATTTATTTTATT-----AAACTTTATTTATTAGTTT Sophora_davidii_C19 -----AGAATTCTTATTTATTTTATT-----AAACTTTATTTATTAGTTT Sophora_davidii_C2 -----AGAATTCTTATTTATTTTATTTTATTAAACTTTATTTATTAGTTT Sophora_davidii_C20 -----AGAATTCTTATTTATTTTATT-----AAACTTTATTTATTAGTTT Sophora_davidii_C21 -----AGAATTCTTATTTATTTTATT-----AAACTTTATTTATTAGTTT Sophora_davidii_C22 -----AGAATTCTTATTTATTTTATT-----AAACT----------GTTT Sophora_davidii_C3 -----AGAATTCTTATTTATTTTATTTTATTAAACTTTATTTATTAGTTT Sophora_davidii_C4 -----AGAATTCTTATTTATTTTATTTTATTAAACTTTATTTATTAGTTT Sophora_davidii_C5 -----AGAATTCTTATTTATTTTATTTTATTAAACTTTATTTATTAGTTT Sophora_davidii_C6 -----AGAATTCTTATTTATTTTATT-----AAACTTTATTTATTAGTTT Sophora_davidii_C7 -----AGAATTCTTATTTATTTTATT-----AAACTTTATTTATTAGTTT Sophora_davidii_C8 -----AGAATTCTTATTTATTTTATT-----AAACTTTATTTATTAGTTT Sophora_davidii_C9 -----AGAATTCTTATTTATTTTATT-----AAACTTTATTTATTAGTTT Sophora_davidii_C1 AAGTTTATTAGAATAAATTCTAAAAATTTATATAT--AATAATAAATA-- Sophora_davidii_C10 AAGTTTATTAGAATAAATTATAAAAATTTATATAT--AATAATAAATA-- Sophora_davidii_C11 AAGTTTATTAGAATAAATTATAAAAATTTATATAT--AATAATAAATA-- Sophora_davidii_C12 AAGTTTATTAGAATAAATTATAAAAATTTATATAT--AATAATAAATA-- Sophora_davidii_C13 AAGTTTATTAGAATAAATTATAAAAATTTATATATATAATAATAAATA-- Sophora_davidii_C14 AAGTTTATTAGAATAAATTATAAAAATTTATATAT--AATAATAAATA-- Sophora_davidii_C15 AAGTTTATTAGAATAAATTATAAAAATTTATATAT--AATAATAAATA-- Sophora_davidii_C16 AAGTTTATTAGAATAAATTATAAAAATTTATATAT--AATAATAAATA-- Sophora_davidii_C17 AAGTTTATTAGAATAAATTATAAAAATTTATATAT--AATAATAAATA-- Sophora_davidii_C18 AAGTTTATTAGAATAAATTATAAAAATTTATATAT--AATAATAAATA-- Sophora_davidii_C19 AAGTTTATTAGAATAAATTATAAAAATTTATATAT--AATAATAAATA-- Sophora_davidii_C2 AAGTTTATTAGAATAAATTCTAAAAATTTATATAT--AATAATAAATA-- Sophora_davidii_C20 AAGTTTATTAGAATAAATTATAAAAATTTATATAT--AATAATAAATA-- Sophora_davidii_C21 AAGTTTATTAGAATAAATTATAAAAATTTATATAT--AATAATAAATA-- Sophora_davidii_C22 AAGTTTATTAGAATAAATTATAAAAATTTATATAT--AATAATAAATA-- Sophora_davidii_C3 AAGTTTATTAGAATAAATTCTAAAAATTTATATAT--AATAATAAATA-- Sophora_davidii_C4 AAGTTTATTAGAATAAATTCTAAAAATTTATATAT--AATAATAAATA-- Sophora_davidii_C5 AAGTTTATTAGAATAAATTCTAAAAATTTATATAT--AATAATAAATATA Sophora_davidii_C6 AAGTTTATTAGAATAAATTCTAAAAATTTATATAT--AATAATAAATA-- Sophora_davidii_C7 AAGTTTATTAGAATAAATTATAAAAATTTATATAT--AATAATAAATA-- Sophora_davidii_C8 AAGTTTATTAGAATAAATTATAAAAATTTATATAT--AATAATAAATA-- Sophora_davidii_C9 AAGTTTATTAGAATAAATTATAAAAATTTATATAT--AATAATAAATA-- Sophora_davidii_C1 ----ATTATAGACAATTAATTCTATATTCA-----------ATATTCTAT Sophora_davidii_C10 ----ATTATAGACAATTAATTCTATATTAA-----------ATATTCTAT Sophora_davidii_C11 ----ATTATAGACAATTAATTCTATATTAA-----------ATATTCTAT Sophora_davidii_C12 ----ATTATAGACAATTAATTCTATATTAA-----------ATATTCTAT Sophora_davidii_C13 ----ATTATAGACAATTAATTCTATATTAA-----------ATATTCTAT Sophora_davidii_C14 ----ATTATAGACAATTAATTCTATATTAA-----------ATATTCTAT Sophora_davidii_C15 ----ATTATAGACAATTAATTCTATATTAA-----------ATATTCTAT Sophora_davidii_C16 ----ATTATAGACAATTAATTCTATATTAA-----------ATATTCTAT Sophora_davidii_C17 ----ATTATAGACAATTAATTCTATATTAA-----------ATATTCTAT Sophora_davidii_C18 ----ATTATAGACAATTAATTCTATATTAATTCTATATTAAATATTCTAT Sophora_davidii_C19 ----ATTATAGACAATTAATTCTATATTAATTCTATATTAAATATTCTAT Sophora_davidii_C2 ----ATTATAGACAATTAATTCTATATTCA-----------ATATTCTAT Sophora_davidii_C20 ----ATTATAGACAATTAATTCTATATTAA-----------ATATTCTAT Sophora_davidii_C21 ----ATTATAGACAATTAATTCTATATTAA-----------ATATTCTAT Sophora_davidii_C22 ----ATTATAGACAATTAATTCTATATTAA-----------ATATTCTAT Sophora_davidii_C3 ----ATTATAGACAATTAATTCTATATTCA-----------ATATTCTAT Sophora_davidii_C4 ----ATTATAGACAATTAATTCTATATTCA-----------ATATTCTAT Sophora_davidii_C5 AATAATTATAGACAATTAATTCTATATTCA-----------ATATTCTAT Sophora_davidii_C6 ----ATTATAGACAATTAATTCTATATTCA-----------ATATTCTAT Sophora_davidii_C7 ----ATTATAGACAATTAATTCTATATTAA-----------ATATTCTAT Sophora_davidii_C8 ----ATTATAGACAATTAATTCTATATTAA-----------ATATTCTAT Sophora_davidii_C9 ----ATTATAGACAATTAATTCTATATTAA-----------ATATTCTAT Sophora_davidii_C1 TGTATATTAGATATTCGAAAATATTCTTTGAATCCAGTTAATTCGGATTA Sophora_davidii_C10 TGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTA Sophora_davidii_C11 TGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTA Sophora_davidii_C12 TGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTA Sophora_davidii_C13 TGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTA Sophora_davidii_C14 TGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTA Sophora_davidii_C15 TGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTA Sophora_davidii_C16 TGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTA Sophora_davidii_C17 TGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTA Sophora_davidii_C18 TGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTA Sophora_davidii_C19 TGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTA Sophora_davidii_C2 TGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTA Sophora_davidii_C20 TGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTA Sophora_davidii_C21 TGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTA Sophora_davidii_C22 TGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTA Sophora_davidii_C3 TGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTA Sophora_davidii_C4 TGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTA Sophora_davidii_C5 TGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTA Sophora_davidii_C6 TGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTA Sophora_davidii_C7 TGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTA Sophora_davidii_C8 TGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTA Sophora_davidii_C9 TGTATATTAGATATTAGAAAATATTCTTTGAATCCAGTTAATTCGGATTA Sophora_davidii_C1 TTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTA Sophora_davidii_C10 TTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTA Sophora_davidii_C11 TTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTA Sophora_davidii_C12 TTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTA Sophora_davidii_C13 TTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTA Sophora_davidii_C14 TTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTA Sophora_davidii_C15 TTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTA Sophora_davidii_C16 TTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTA Sophora_davidii_C17 TTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTA Sophora_davidii_C18 TTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTA Sophora_davidii_C19 TTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTA Sophora_davidii_C2 TTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTA Sophora_davidii_C20 TTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTA Sophora_davidii_C21 TTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTA Sophora_davidii_C22 TTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTA Sophora_davidii_C3 TTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTA Sophora_davidii_C4 TTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTA Sophora_davidii_C5 TTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTA Sophora_davidii_C6 TTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTA Sophora_davidii_C7 TTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTA Sophora_davidii_C8 TTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTA Sophora_davidii_C9 TTCCAACTTTCTCTATTTCTTACACAAAAAAACTTTTTGAATTCCTCGTA Sophora_davidii_C1 GAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCC Sophora_davidii_C10 GAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCC Sophora_davidii_C11 GAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCC Sophora_davidii_C12 GAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCC Sophora_davidii_C13 GAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCC Sophora_davidii_C14 GAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCC Sophora_davidii_C15 GAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCC Sophora_davidii_C16 GAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCC Sophora_davidii_C17 GAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCC Sophora_davidii_C18 GAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCC Sophora_davidii_C19 GAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCC Sophora_davidii_C2 GAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCC Sophora_davidii_C20 GAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCC Sophora_davidii_C21 GAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCC Sophora_davidii_C22 GAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCC Sophora_davidii_C3 GAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCC Sophora_davidii_C4 GAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCC Sophora_davidii_C5 GAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCC Sophora_davidii_C6 GAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCC Sophora_davidii_C7 GAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCC Sophora_davidii_C8 GAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCC Sophora_davidii_C9 GAAATAGATTGCGCTAATGAAAAAGATTTCAATGCTGTCCAATACCCCCC Sophora_davidii_C1 CTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTT Sophora_davidii_C10 CTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTT Sophora_davidii_C11 CTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTT Sophora_davidii_C12 CTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTT Sophora_davidii_C13 CTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTT Sophora_davidii_C14 CTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTT Sophora_davidii_C15 CTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTT Sophora_davidii_C16 CTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTT Sophora_davidii_C17 CTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTT Sophora_davidii_C18 TTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTT Sophora_davidii_C19 TTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTT Sophora_davidii_C2 CTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTT Sophora_davidii_C20 CTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTT Sophora_davidii_C21 CTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTT Sophora_davidii_C22 CTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTT Sophora_davidii_C3 CTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTT Sophora_davidii_C4 CTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTT Sophora_davidii_C5 CTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTT Sophora_davidii_C6 CTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTT Sophora_davidii_C7 CTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTT Sophora_davidii_C8 CTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTT Sophora_davidii_C9 CTTTTTCCAAAAATTTTTTCGAATTCTTTTTTTTGATATAGAAGTACGTT Sophora_davidii_C1 TTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTATCTCGACTTCA Sophora_davidii_C10 TTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCA Sophora_davidii_C11 TTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCA Sophora_davidii_C12 TTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCA Sophora_davidii_C13 TTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCA Sophora_davidii_C14 TTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCA Sophora_davidii_C15 TTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCA Sophora_davidii_C16 TTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCA Sophora_davidii_C17 TTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCA Sophora_davidii_C18 TTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCA Sophora_davidii_C19 TTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCA Sophora_davidii_C2 TTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTATCTCGACTTCA Sophora_davidii_C20 TTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCA Sophora_davidii_C21 TTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCA Sophora_davidii_C22 TTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCA Sophora_davidii_C3 TTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTATCTCGACTTCA Sophora_davidii_C4 TTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTATCTCGACTTCA Sophora_davidii_C5 TTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTATCTCGACTTCA Sophora_davidii_C6 TTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTATCTCGACTTCA Sophora_davidii_C7 TTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCA Sophora_davidii_C8 TTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCA Sophora_davidii_C9 TTTTCTTGGCTAATCCGCCCCTATACTATGTAAAAATTACCTCGACTTCA Sophora_davidii_C1 ATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAA Sophora_davidii_C10 ATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAA Sophora_davidii_C11 ATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAA Sophora_davidii_C12 ATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAA Sophora_davidii_C13 ATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAA Sophora_davidii_C14 ATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAATAAATAAAATGGAA Sophora_davidii_C15 ATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAATAAATAAAATGGAA Sophora_davidii_C16 ATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAA Sophora_davidii_C17 ATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAA Sophora_davidii_C18 ATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAA Sophora_davidii_C19 ATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAA Sophora_davidii_C2 ATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAA Sophora_davidii_C20 ATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAA Sophora_davidii_C21 ATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAA Sophora_davidii_C22 ATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAA Sophora_davidii_C3 ATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAA Sophora_davidii_C4 ATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAA Sophora_davidii_C5 ATTTCAACCCGTTTTTCGTTATCATTCTTGAAATAA-------AATGGAA Sophora_davidii_C6 ATTTCAACCCGTTTTTCGTTATCATTCTTGAAATAA-------AATGGAA Sophora_davidii_C7 ATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAA Sophora_davidii_C8 ATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAA Sophora_davidii_C9 ATTTCAACCCGTTTTTCGTTATCATTCTTTAAATAA-------AATGGAA Sophora_davidii_C1 ACATTTTTTT--ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAA Sophora_davidii_C10 ACATTTTTTT--ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAA Sophora_davidii_C11 ACATTTTTTTG-ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAA Sophora_davidii_C12 ACATTTTTTTTTATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAA Sophora_davidii_C13 ACATTTTTTTT-ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAA Sophora_davidii_C14 ACATTTTTTTT-ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAA Sophora_davidii_C15 ACATTTTTTTT-ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAA Sophora_davidii_C16 ACATTTTTTTT-ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAA Sophora_davidii_C17 ACATTTTTTTG-ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAA Sophora_davidii_C18 ACATTTTTTTT-ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAA Sophora_davidii_C19 ACATTTTTTTG-ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAA Sophora_davidii_C2 ACATTTTTTT--ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAA Sophora_davidii_C20 ACATTTTTTTG-ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAA Sophora_davidii_C21 ACATTTTTTTG-ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAA Sophora_davidii_C22 ACATTTTTTTG-ATCTTTTTGGAATCCATATGACTTCGAAAGCAATGTAA Sophora_davidii_C3 AAATTTTTTT--ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAA Sophora_davidii_C4 ACATTTTTTT--ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAA Sophora_davidii_C5 ACATTTTTTT--ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAA Sophora_davidii_C6 ACATTTTTTT--ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAA Sophora_davidii_C7 ACATTTTTTT--ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAA Sophora_davidii_C8 ACATTTTTTTT-ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAA Sophora_davidii_C9 ACATTTTTTTG-ATCTTTTTGGAATCCATATGACTTCGCAAGCAATGTAA Sophora_davidii_C1 AAAAAAAAAAGACTTCTAAAAAAAGAAGTAT-------AAAGTAAAGGAG Sophora_davidii_C10 AAAAAAAAAAGACTTCTAAAAAAAGAAGTATGAAGTATAAAGTAAAGGAG Sophora_davidii_C11 AAAAAAAAAAGACTTCTAAAAAAAGAAGTATGAAGTATAAAGTAAAGGAG Sophora_davidii_C12 AAAAAAAAAAGACTTCTAAAAAAAGAAGTAT-------AAAGTAAAGGAG Sophora_davidii_C13 AAAAAAAAAAGACTTCTAAAAAAAGAAGTAT-------AAAGTAAAGGAG Sophora_davidii_C14 AAAAAAAAAAGACTTCTAAAAAAAGAAGTAT-------AAAGTAAAGGAG Sophora_davidii_C15 AAAAAAAAAAGACTTCTAAAAAAAGAAGTAT-------AAAGTAAAGGAG Sophora_davidii_C16 AAAAAAAAAAGACTTCTAAAAAAAGAAGTAT-------AAAGTAAAGGAG Sophora_davidii_C17 AAAAAAAAAAGACTTCTAAAAAAAGAAGTAT-------AAAGTAAAGGAG Sophora_davidii_C18 AAAAAAAAAAGACTTCTAAAAAAAGAAGTAT-------AAAGTAAAGGAG Sophora_davidii_C19 AAAAAAAAAAGACTTCTAAAAAAAGAAGTATGAAGTATAAAGTAAAGGAG Sophora_davidii_C2 AAAAAAAAAAGACTTCTAAAAAAAGAAGTAT-------AAAGTAAAGGAG Sophora_davidii_C20 AAAAAAAAAAGACTTCTAAAAAAAGAAGTATGAAGTATAAAGTAAAGGAG Sophora_davidii_C21 AAAAAAAAAAGACTTCTAAAAAAAGAAGTATGAAGTATAAAGTAAAGGAG Sophora_davidii_C22 AAAAAAAAAAGACTTCTAAAAAAAGAAGTAT-------AAAGTAAAGGAG Sophora_davidii_C3 AAAAAAAAAAGACTTCTAAAAAAAGAAGTAT-------AAAGTAAAGGAG Sophora_davidii_C4 AAAAAAAAAAGACTTCTAAAAAAAGAAGTAT-------AAAGTAAAGGAG Sophora_davidii_C5 AAAAAAAAAAGACTTCTAAAAAAAGAAGTAT-------AAAGTAAAGGAG Sophora_davidii_C6 AAAAAAAAAAGACTTCTAAAAAAAGAAGTAT-------AAAGTAAAGGAG Sophora_davidii_C7 AAAAAAAAAAGACTTCTAAAAAAAGAAGTAT-------AAAGTAAAGGAG Sophora_davidii_C8 AAAAAAAAAAGACTTCTAAAAAAAGAAGTAT-------AAAGTAAAGGAG Sophora_davidii_C9 AAAAAAAAAAGACTTCTAAAAAAAGAAGTAT-------AAAGTAAAGGAG Sophora_davidii_C1 CAATAGAGTCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAA Sophora_davidii_C10 CAATAGAATCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAA Sophora_davidii_C11 CAATAGAATCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAA Sophora_davidii_C12 CAATAGAATCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAA Sophora_davidii_C13 CAATAGAATCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAA Sophora_davidii_C14 CAATAGAATCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAA Sophora_davidii_C15 CAATAGAGTCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAA Sophora_davidii_C16 CAATAGAGTCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAA Sophora_davidii_C17 CAATAGAGTCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAA Sophora_davidii_C18 CAATAGAGTCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAA Sophora_davidii_C19 CAATAGAATCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAA Sophora_davidii_C2 CAATAGAGTCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAA Sophora_davidii_C20 CAATAGAATCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAA Sophora_davidii_C21 CAATAGAATCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAA Sophora_davidii_C22 CAATAGAATCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAA Sophora_davidii_C3 CAATAGAGTCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAA Sophora_davidii_C4 CAATAGAGTCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAA Sophora_davidii_C5 CAATAGAGTCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAA Sophora_davidii_C6 CAATAGAATCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAA Sophora_davidii_C7 CAATAGAATCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAA Sophora_davidii_C8 CAATAGAATCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAA Sophora_davidii_C9 CAATAGAATCTATTGCTCCTTTACTTTTTTAAAAACTCGTATACTTTAAA Sophora_davidii_C1 ACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTA Sophora_davidii_C10 ACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTA Sophora_davidii_C11 ACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTA Sophora_davidii_C12 ACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTA Sophora_davidii_C13 ACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTA Sophora_davidii_C14 ACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTA Sophora_davidii_C15 ACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTA Sophora_davidii_C16 ACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTA Sophora_davidii_C17 ACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTA Sophora_davidii_C18 ACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTA Sophora_davidii_C19 ACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTA Sophora_davidii_C2 ACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTA Sophora_davidii_C20 ACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTA Sophora_davidii_C21 ACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTA Sophora_davidii_C22 ACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTA Sophora_davidii_C3 ACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTA Sophora_davidii_C4 ACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTA Sophora_davidii_C5 ACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTA Sophora_davidii_C6 ACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTA Sophora_davidii_C7 ACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTA Sophora_davidii_C8 ACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTA Sophora_davidii_C9 ACCCCGATATTATCCATTTATAGATGGAGCCTCGACCGCAGCCAGGTCTA Sophora_davidii_C1 GAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C10 GAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C11 GAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C12 GAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C13 GAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C14 GAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C15 GAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C16 GAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C17 GAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C18 GAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C19 GAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C2 GAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C20 GAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C21 GAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C22 GAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C3 GAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C4 GAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C5 GAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C6 GAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C7 GAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C8 GAGGGAAGTTATGAGCATTACGTTCATGCAT Sophora_davidii_C9 GAGGGAAGTTATGAGCATTACGTTCATGCAT ; END; BEGIN TREES; Title 'Trees from "cpDNA haplotype matrix for beast analysis (with repeatitive regions)"'; LINK Taxa = Taxa; TRANSLATE 1 Sophora_davidii_C1, 2 Sophora_davidii_C10, 3 Sophora_davidii_C11, 4 Sophora_davidii_C12, 5 Sophora_davidii_C13, 6 Sophora_davidii_C14, 7 Sophora_davidii_C15, 8 Sophora_davidii_C16, 9 Sophora_davidii_C17, 10 Sophora_davidii_C18, 11 Sophora_davidii_C19, 12 Sophora_davidii_C2, 13 Sophora_davidii_C20, 14 Sophora_davidii_C21, 15 Sophora_davidii_C22, 16 Sophora_davidii_C3, 17 Sophora_davidii_C4, 18 Sophora_davidii_C5, 19 Sophora_davidii_C6, 20 Sophora_davidii_C7, 21 Sophora_davidii_C8, 22 Sophora_davidii_C9; TREE TREE1 = (((19:106525.60273643976,18:106525.60273643976):323592.47016359045,(1:247144.73178279764,((12:49614.34098409038,17:49614.34098409038):86582.62497560967,16:136196.96595970006):110947.76582309758):182973.34111723257):957296.4397126916,(((((2:86476.23172772053,(14:65212.117079050346,3:65212.117079050346):21264.11464867017):32661.377107038163,(11:77096.73876097624,22:77096.73876097625):42040.870073782455):252269.56998016845,(13:129196.87904880753,15:129196.8790488075):242210.29976611963):-10740.09761199134,(20:159948.37671479833,((21:22543.04801160294,5:22543.048011602925):62225.250021589156,(4:22117.96538892799,6:22117.965388927994):62650.33264426411):75180.07868160623):200718.70448813747):453519.5492464286,(9:332346.7173040848,(10:193514.45149961312,(8:47817.77849715185,7:47817.77849715184):145696.6730024613):138832.26580447162):481839.9131452796):573227.8821633573); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 831; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 831; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 831; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7802976368059034223; tell It; setDefaultOrder 4 20 10 18 17 12 11 9 7 19 14 0 6 15 13 5 3 1 2 21 16 8; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 1117544747613529653; checksumv 0 2 1803299256 null; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 447; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #7802976368059034223 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #7802976368059034223; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 380; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #7802976368059034223 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1188.1363612267484.8832621036924182233; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 380; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; toggleCorners off; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #1117544747613529653 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 600 380; setLocation 8 8; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;