NEXUS [File created by TreeBASE: 7/26/07 20:58:34] [Matrix accession#: M851] BEGIN TAXA; TITLE M851; DIMENSIONS NTAX=11; TAXLABELS Xenocylindrocladium_guianense_STEU_3397 Xenocylindrocladium_guianense_STEU_3396 Xenocylindrocladium_subverticillatum_STEU_3397 Xenocylindrocladium_serpens_STEU_1144 Gliocladiopsis_tenuis_IMI_300597 Cylindrocladium_scoparium_ATCC_46300 Cylindrocladium_floridanum_ATCC_18882 Curvicladium_cigneum_STEU_1595 Cylindrocladiella_microcylindrica_ATCC_38571 Cylindrocladiella_infestans_ATCC_44816 Fusarium_subglutinans_NRRL_22016 ; END; BEGIN CHARACTERS; TITLE M851; DIMENSIONS NCHAR=571; FORMAT DATATYPE = DNA MISSING = ? GAP = - ; MATRIX Xenocylindrocladium_guianense_STEU_3397 CGCGGTGCTTTGTTACTGCCCCTGATTCTACCCCNCCGTCCCCGAT---GNCTGCCGTCTCGTCAACAGCAAAGTCCGTGGGCTTCGTCATGATGCGGGATTCTGTGATATTTG-GGATAAGATGCCTGACCAG--TGCTTCTTCTTCAACTATAGGTTCACCTCCAGACCGGTCAGTGCGTAAGT--ACTCCCTCCGATTCGACTGTTTATCAT---GAGGGGATTCACTGACA-TGA---GACCAGGGTAACCAAATTGGTGCCGCCTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGCAGCTCCGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTATGTTGTG-CATCATCGCCCCTGG--CAAACATGGCAGCAATCAAACTCACAC------CACTGTAGGCTTCTGGCAACAAGTACGTTCCCCGTGCCGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTT-CGGTCAGCTCTTCCGCCCCGACAACTT????????????????????? Xenocylindrocladium_guianense_STEU_3396 CGCGGTGCTTTGTTGCTGCCCCTGATTCTACCCCGCCGTCCNNGAT---GGTTGCCGTCTTGACAACAGCAAAGCCCGTGGGCTTCGCCATGATGCGGGATTCTGTGATATTTG-GGATAAGATGGCTGACCAG--TGCTTCTTCTTCAACTATAGGTTCACCTCCAGACCGGNCAGTGCGTAAGN--ACTCCCTCCGATTCGACTGTTTATCAT---GAGGGGATTCACTGACA-TGA---GACCAGGGTAACCAAATTGGTGCCGCCTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGCAGTTCCGAGCTTTAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTATG??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Xenocylindrocladium_subverticillatum_STEU_3397 ???????????GTTGCTGCCCCTGATTCTACCCCGCTNCCGCCGTT---GGCAGCCCTCTCGACAACAACAATGCTCGCGAGCCGC-CGGCGCGATATCATAGTCTGGTATT-G-GGACAAGATGGCTGACTGTG-TGTTTCTTCATCGAATATAGGTTCACCTCCAGACCGGTCAGTGCGTAAG--TTCTCCCTTCGACCCAGCTCACCTCCAT---GAGCGGATTCACTAACA-TTG---GAGCAGGGTAACCAAATTGGTGCCGCCTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGCACCTCCGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTATGTTGTG-AATCACGCCCCCCCCTTCAAGCCGCACAGCACGCAGGCTCACACCACCCTCACTGCAGGCTTCCGGTAACAAGTATGTTCCCCGTGCCGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGCCCCGACAACTT????????????????????? Xenocylindrocladium_serpens_STEU_1144 ?GCGCTGCTTGGCTGCTGCCCCTGATTCTACCCCGCTGCCTCTGCT---GCCCG---TCTCGACAACATCGATGCGAGTG-GCTCC-CGA-GCCGTGTAATGGTGCGATANT-G-GAACAAGATGGCTGACCAGC-GATTTCTTCATCGAATATAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTCTTTCCCCCTCGATCCCAATGTTGACCTC---GAGGGGATTTGCTAACA-CTG---G-GTAGGGTAACCAAATTGGTGCCGCCTTCTGGCAGACCATCTCCGGCGAGCACGGCCTTGACAGCAATGGTGTCTACAACGGCACCTCCGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTATGTTGTG-AATCACGGTCCCTCGC-CAGGCGAGACGACAAACCAGCTCACGCCAC------TGCAGGCTTCTGGCAACAAGTATGTTCCCCGTGCCGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGCCCCGACAACTT????????????????????? Gliocladiopsis_tenuis_IMI_300597 ???????????GTCGCTGCCCCTGATTCTACCCCGCCGGGCCATT-----CCCACCGCCACGACAACAACAAAGCTCGGGA-C-CT-CGAT-------CACGACGTGATAA-TG-GAACACGATGGCTGACAAT-GTCT-TTTTTGCAAAATATAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTAACTCCCCTACATCTCAACAGTTCATTATCGCGCGGGGATTGACTGACGATTGCGTGGATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCTGAGCTCCAGCTCGAGCGCATGAGCGTCTACTTCAACGAGGTACGTGATACAATGATTC--TTGCCCCTTGCTCCCCCGAGAAGACGAGCCAAAGCTCACACCACCAAGGCCTCTGGCAACAAGTATGTCCCTCGCGCCGTTCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGCCCCTTTGGTCAGCTTTTCCGCCCCGACAACTT????????????????????? Cylindrocladium_scoparium_ATCC_46300 ?GCGTGCCTTGGTTGCTGCCCCTGATTCTACCCCGCCGCCCCGGTTTCCAC----CACATCGACGAAAACAAAGC-CGCAG-CCTCACGAA-------CATGATGTGATATCAGA--ACAAGATTGCTAACCGT-GTGCTTCTTTCTCGATTATAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGCT---CTTCAACTCCAACAAAATTCTC-ACGACCG-GATTCACTGACAGTTA--TCGACAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATTTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACGCTGGTACCTCCGAGCTCCAGCTCGAGCGTATGAACGTCTACTTCCACGAGGTATGTGA--AAACCACGCGG-TGTT--CTCACACGCCGAGAGGCACAAGCAA-ACTGACACNATGTAGGCTTCTGGCAACAAGTTCCGTCCTTGTGCTGTCGTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTCCGCCCCGACAACTT????????????????????? Cylindrocladium_floridanum_ATCC_18882 ?GCGTGCCTTTGTTGCTGCCCCTGAGCGTACCCCGCCGACCCGGTTTCCAC----CGCTTCGACAACAACAAAGCTCGATG-GCTT-CAAG-------CACAATGCGATATTGGAGGACAAGGTTGCTAACTATCGTTTTTCTCTCTCAATTATAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTGATAGTTCCCAACTTCAAAAAAAAAATCTACCGTGAAGATTGACTGACACTTA--TGGCTAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATTTTTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGACCTCCAGTTGGAGCGTATGAACGTCTACTTCAACGAGGTATGTGGTCAAATTGC------AACATCGCTTTGGCGAGAATATAGAGCCAGCACTCACACCATCTAGGCTTCCGGCAACAAGTATGTCCCTCGCGCTGTCCTCGTCGATNTTGAGCCCGGTNCCATGGATGCCGTCCGTGCCGGCCCTTTNGGTCAGCTCTTCCGCCCCGACAACTT????????????????????? Curvicladium_cigneum_STEU_1595 ???????????GTTGCTACCCCTGATTCTACCCCGCCGACCCGGCTCTCAC----CACCTCGACGACAACAAGGCTCGCCG-CTT-GC-AA-------TATGTTGTGATGCTGGA--TCCTGATGGCTAACCGC-GTGTTTCTTTCTCAATTATAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTGCT--TCCT---CCTCGATCCTCTGCT--ATGACGG-GATTCACTGACATTCG--TGGATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACGCCGGTRCCTMTGAGCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTATGTGGTGAAATCACGTYACTAATGATGCCCTCGACAAGCGGTAAACAAAA-ACTCACACCACCTAGGCTTCTGGCAACAAGTATGTTCCTCGCGCCGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCCTTCGGCCAGCTCTTCCGCCCCGACAACTT????????????????????? Cylindrocladiella_microcylindrica_ATCC_38571 ???????????????????????????????????????????ACCATTTTCCACCGCYTCGGCAACAACAAAGCTCGCGA-TAAT--GCC-------CACGTCGTGATATCTT-GAATGAGATTGCTAATC---ATGTGTTTCTG-AAC-TATAGGTCCACCTCCAGACCGGCCAGTGCGTAAGTT-TACACCT-CACCTTCACGAGTCTCT-----GCGGCGTTTG-CTCACGAT-NCAT-AACAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTCTACAACGGCAGCTCTGAGCTCCAGCTCGAGCGCATGAGCGTCTACTTCAACGAGGTACGTGA--CTGAAG-AT--CTA-AT-TTGCCACA--G-AGAATCACAGTG-A-CTTACGCCTATTAGGCTTCTGGCAACAAGTATGTCCCTCGCGCTGTCCTCGTCGATCTYGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCTTT???????????????????????????????????????????????? Cylindrocladiella_infestans_ATCC_44816 ??????????????GCTGCCCCTSATTCTATCCMGCCGAATCGTTTCCCACCCACCGCCTCGACAACAACAAAGCTCGCGA-TGCC-CACC-------CACATCGTGATATCT--GAAGACAATGGCTAATTTT-GTGTGTTTCTGCGAA-TATAGGTCCACCTCCAGACCGGTCAGTGCGTAAGTA-CATTCCT-CACCTCGACAAGCTTCG-----TCAACGGCTG-CTAACGGT-GTCTCGATAGGGTAACCAAATTGGTGCTGCTTTCTGGCAGACCATCTCTGGCGAGCACGGTCTCGACAGCAATGGTGTNTACAACGGCAGCTCTGAGCTCCAGCTCGAGCGCATGAGCGTCTACTTCAACGAGGTACGTGA--CTATGGCAC--TCACAT-TTGCTACACTGTGAAATCAGAATGTA-CTCACGCTCCGTAGGCTTCTGGCAACAAGTATGTCCCTCGCGCCGTCCTCGTCGATCTTGAGCCCGGTACCATGGATGCCGTCCGTGCCGGTCCTTTCGGTCAGCTCTTTCGTCCCGACAACTT????????????????????? Fusarium_subglutinans_NRRL_22016 CGCGTTGAGTTTATGGTGCCCCTGATTCTACCCCGCTGGG--------CGGTGGCAGCT----CAACGACAATGCACGATAGCTA-GCAGCTTTA-AATACCTTCTG----TCAAGATGAAGA-AGCTAATCAGATCTTTTCTCTGCG----ATAGGTTCACCTCCAGACCGGTCAGTGCGTAAGTGCTCATCGCTT-CCTCGAC-----GTCGCATGTGGGGGAT--GCTCACGAT-GTTT-ATCAGGGTAACCAAATTGGTGCTGCTTTCTGGCAAACCATCTCTGGCGAGCACGGCCTCGACAGCAATGGTGTCTACAACGGTACCTCCGAGCTCCAGCTCGAGCGTATGAGTGTCTACTTCAACGAGGTATGCTTTAACA-------GTCA---------ATGCCAAGAATTC---CCA-AGCTCACACAAC-TAGGCCTCTGGCAACAAGTATGTTCCCCGAGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGAGCTGGTCCCTTCGGTCAGCTCTTCCGTCCCGACAACTTCGTTTTCGGTCAGTCCGGTGC ; END; BEGIN CODONS; CODONPOSSET * CodonPositions = N: 1 - 571 ; CODESET * UNTITLED = Universal: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; END;