NEXUS
[File created by TreeBASE:  7/26/07  20:56:39]
[Matrix accession#: M457]

BEGIN TAXA;
	TITLE M457;
	DIMENSIONS  NTAX=20;
	TAXLABELS
		Piper	Saruma	Acorus	Gymnostachys	Symplocarpus	Alstroemeria	Curculigo	Vellozia	Trillium	Veratrum	Smilax	Tacca	Xanthorrhoea	Nypa	Catopsis	Anigozanthos	Canna	Eriocaulon	Flagellaria	Oryza
	;
END;

BEGIN CHARACTERS;
	TITLE M457;
	DIMENSIONS NCHAR=242;
	FORMAT DATATYPE = DNA MISSING = ? GAP = -  ;
	MATRIX
		Piper              TCCATGAGCCCAGCTGAGTGTTGCCACCGCCCGCTGGAACGTCCATATTCCGATGTTATATCGCGTCCAGAGGTCCCATACCGCCGGACCACGGCGCACTCAAAGAGATAACGTACCCGTATCGGCTCCGTAGGCGCATACCCCTCGGCTCGTCAGCTCAGGAT?CGCTTTC?AGCTAACTGTCGCGATCTGCGGCCACTTACAA?CTCGGTGGATGAGATAGC??????????????????
		Saruma             TCCCTGAACTCAGCTGAGTGTTGCCACCGCCTGCTGGATCATCTGTACCCCGGCATTCGTCCAT?CTTAGAGGTTCCATG?CGCCAGACCACGGTGCATTCAAATAGACAGCGTACCCGTATCAGTTTCGTAGGCGCAT?TCCCTTGACCTGTTAGCTCAGGA?ACGCTTTCAAGCTAACTATCGTGACTCGCGGCCGCTTACAATATAGGTGGGTAAGATGCCT?TAAGACATAGAGC?TG
		Acorus             TCCATGAATTCAACC?AGTGTCGCCCCCGCCCGTTGGAATATCCGTGCCCTGGCTTCCGTCCACGCT?GGAGGTTCCATGCGGCCAAACTACGGCGAGTCTATAGGAATAATGTGTGCCAAGCAGTTTCGTATGCGATTACCCCTTGGCTCG?TAGCCAAGGATAGACTTACAAGTTTACTATTGCACCTCGCGGTCGCTTACAATATCGATGGACACCATTGT??????????????????
		Gymnostachys       CCCCTGGACTCAACTAGGTATTGTCACCGGCCGTTGAAACATCCGTGCTTCGGCTTTCGTCCACGCTCAGAAGTTCCAGACGACCAGACCACGGCGAATCCATAGGGATAACGTATGTGTGTTAGCCTTGTAGGTGTATACCCCTCGGTTCATTAGCTAAATGTGGGTTTACAAGTTTAATATCGCGATTCGTGGCCGCTTACAACATCGGCGGATAAGATAGCTCTGAGACAC????????
		Symplocarpus       TCCCTGGACTCAACTAA?TATTTTCACCGGCCGTTAGATCGTCCGTGCTTCGGCTTTCGTCAACACCCAGAGGTTCCAGATGACCAGA?CACGGCGAATTCAAAGGGATAATGTATCTGTGTCAGCTCCGTAGGTGCATACCCCTCGGTCCATTATCTAAGTATGGGTTTACAAGTTTACTATCGCGATTCGTGGCCGCTTACAACATCGGCGGATAACATAGC??????????????????
		Alstroemeria       CCCCCGAACTTAGCCAAGTGTTGTT?CTGACTATTGGAATATCCGTTTCCTGGCGTCCGTCCACGCCTAAAGGCTCCGCACAGCCGGAATACGACGCATTCACTGGAGCAGCGGGTATGTATTAGTTTCAACGGCGTATCCCCTCTAGTTCATCAGCTAAGGATGGATTTTCAAGTTTACTACTGCGATTCGCAGTCGCTTAT?GTATCAGTAGGTAAGATAGTCCCGAGACGCGCGAAG?G
		Curculigo          TTCCCGAACTTAGCTGAGAGTTGTTACCGGCCATTGGAACATCCGTTCCCCGGCGTCCGTCTAAGTTCAAAGGTTCCGTACAACCAGAATACGACGAATTCAAAGGAGTAACGAGTGCGCAGCAGTTTCATCTCCGATTCCCCCTCAGTTCATTGGGCAAGGATGGGTTTACAAGCTTACTATTGCGATTCACAGCCGCTTACAACATAGACAGATAAACTAGCCTAGAGACGCAGAGAGCA
		Vellozia           ??CCCGAACTCAGCTAAGAGTTGTTACTGAGCGTTGGAATATTCACTCCCCAGCGTT?TATCGAGTTTGAAGGTTTTATATAGCCGGAATACAACGAACTCAAAGAGATAACATATCCGTATCAGCTTCG?TGGCGCATTCCACCCAGTCCATTATCTCAAGATGGACTTTCAAGTTTACTATCATGATTCGCAGCCGCTTACTAG?TCAATAGATAAAATAGCCCTGAGATACACAAAGTA
		Trillium           CCCCCAAACTCAGGTAGCTGATGTTACCGAGCGCTGGAATATTCGTGCCCCAGCGTTCGTCAACGCTTGAAGGCTCCA?ATAGCCAAGACATGACGAATTCAAAGGGGTAGCGCGTGCGTATTAGTTTCGTTGGCGCATCCCCTTCAGTTCATTAGCTAGGGATGGACTTTCAAGTTTGCTATCGCGATTCGCAGCCGCCTATAATATCAGTAGATAAGATTGCCCTGCG????????????
		Veratrum           CCCCCAAACTTAACTAAC?GTT?TTACTGAGCGTTAGAATATCCGTTCCCCGACGTTATTCCACGCCTAAAAGTTCCACACAGCCACAACATGACGAATGCAAAGGAATAACGCGTGCCAATCAGTTCCGTTGCCGCAGCCCACCCACTCCATTAGCTAGG?ATGGACTCTCAAGTTTACTATCACAATTCGCAGCCGCCTGCAATATCAGTGGATGAGACTGCCCTGCG????????????
		Smilax             TCCCTGAATTCAGCTAAG?G?TGTTACAGAGCGTTGGAATACCCGTTCCCCAGTGTTATTCCACACTCAAAGGTTCCACACAGCCAGA?CACAACGAATGCACTGGGGTAACGTGTGCGCATTAGTTTCGT?GCTACATATCCCTCAGTCCATCAGCTAAGGATGGACCTTCAAG?TTACTATTGCACCCTACAGCCGCCCACAGTATCAGCG?????????????????????????????
		Tacca              TCTCCGAACTCGGCCAA?TATTGTTACCAAGTGCT?G?ATATCCATTCCCCGACGTTATTCCACGTTCAAGGGTCCCATGCAGCCACAACA?GAT?AGTGTGCAGGAGCGACGTGTATGTAT?AGCTTCGTATGCGCATCTT?CTCAGTTCATTAGCTAAGGGTGGGCTTACAAGCTTACTGTAACGATTCGCAGTCGCTTGCAATATCGGTGGATAAGATAGCTCTGAGACACACAACACA
		Xanthorrhoea       TTC?CGAACTCATCTAAGTGTT?CCACTGGCCGTTGAAATATCCGTTCCCCGGCATCCTTCCA?CCCCAAAGGCTCCATACAACCAAAACGCGACGAATGTAAAGGACTAACGAATCCGTATCAGTTTCGTTGGTGCATCCCCCTCAGTTCGATAGCCAAGGATGGATTTTCAAGCTTATTATA?CGATTCACAACCGCTTACAAC?TCGATGGATAAGCCTGCCCTGAACCACACGAAGAA
		Nypa               CTCCCGAACTCAGCTGAGAGTTGTTACCAACCGTCGGAATATCCGTTCCCCGGCGCCCTTCCACATTCAAGGGTTTCATACAGCCGGAACACGACGAATTCAAAGGGGTAACGTGTGCATATCAGTTTCATTGGCGCATCTCCCTCAGTTCATTAGG?AGGGATGGGTTTTCAAGCCTACTATAACGATTCGCAGCTGTCTACAACATCGGTGGATAAGATAGCCTCGAGACCC????????
		Catopsis           ?TCGCGAACTCAGCTAAGTGATTTTACCACCCGTCGGAATATCCATTCCCCGGCGTCATTCAACGTTCAAGGGTTTCATACAGCCAGAACGCAACGAATGCAAAGGGGTAACATGTGCATATCAGTTTCGTTGGCGCATCCTCCTCAGTTCATTAGCTAAGGATGGGTTTTCTAGTCTACTATAATGATTT?CAACCGTTTGCAATATCGGTGAATACGATAGCCCTGAAACCTCCGAAGCA
		Anigozanthos       CTCGTGAGCTTAGCTAAGA?TTGTTATCGCCC?TTGGAATGTCCGTTCCCTGGTATCATTCAATG?CCAAGGGCTCCATACAGTCGGAATACAACAAACTCAAAGGAGTAACGCGTTTGTATCAATCTCGTTGGCGCATTCCCCTCAGTTCATTATCTAAGGGCGGATTTATAAGCTTACTATCGTGGTTTGCAACTGTCTACAAGATCAGTGGATA?GACGCCT?TGAAATACCCAGAGCA
		Canna              TTCC??AACTCAACCAAGTGTTGTT?TCGCGCGTTGGTATATCCGTTCCTCGGCGTCCGTCTATGTCCGAGGGTTCCATATAACCACAATACAACGAATTCAATTAGATAACGTGTTCGTATCAATTTCGTTTGCGCATTCCCCCTACTCCATTAGCTAAG?GTGGATTTATAAGCT?ACTATA?CGATTTGCAGCCGTCTACA?TCTAGGTGGA?AAGATAGCCT????????????????
		Eriocaulon         CTCACGAGTCC?TGTAGCTGTCTTCATAGCCTGTTGAAATACTTGTTCTTTAATACTCGTCAATATCTAAGGATTCCATATAGCTA?AACACAACAAATTC?AAGGGATAGCGTGTCTGTATCAGTTTTGATGGTACAGCCTCCTCGATTCATGAGCCAGGGATGGGTTCTC?GCC?TATC?CAACGGTCTGCAG?CGTTTGCAGTACCAGTGAACAAGATTGC??????????????????
		Flagellaria        TTCGCGAACTGAACTGAGTGTCTTTATCGCCTGTTGGAATATTCATTCCCCGGCGTCATTCAACCTTCAAGGGTTCTATACAGCCAGAATACAACGAATTCGCAGAGGTAGCGTA?CCACAGCAGTTTCGTTGGTGCATCCTCCC?AGTCCGATGGCTAAGGATGGATTTTTTAGC?TACTGTCGGGATTTGCAACCGTTC?CAATATCAGTGAGTAAGATTGCTCAGAACCGCGCGACGAA
		Oryza              TTTGCGAGCTGGGCCAAGTATTTTTCTCGCCCGTTGGTATGTCCGCTCCCCGGCGTCC?TCAATGTTTAAGGACTTTATATAATTAAGACACAACAAATGC?AATAGCTGGCGGACTTGTAT?GATTTTGTCGGTGCATCCCCTC?AGTCTATGAGCTAAAGACAGATCTTTTGCCCTGACATAAGGAT?TGCAATTATTTATTATACCGGT?AGTAAGA?TGCTCAAAACCGCGCGAAACA
	;
END;

BEGIN CODONS;
CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = ord PolyTcount = MINSTEPS ; 
 TYPESET * UNTITLED = unord: 1 - 242 ; 
 END;