#NEXUS [written Mon Mar 04 11:51:47 EST 2013 by Mesquite version 2.75 (build 566) at d-i191-19-46.student.eduroam.uq.edu.au/10.191.19.46] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=179; TAXLABELS Suberites_domuncula_tyr Saccoglossus_kowalevskii_tyrd Saccoglossus_kowalevskii_tyrc Saccoglossus_kowalevskii_tyrb Saccoglossus_kowalevskii_tyra Branchiostoma_floridae_tyrh Branchiostoma_floridae_tyre Branchiostoma_floridae_tyrf Branchiostoma_floridae_tyrg Branchiostoma_floridae_tyrd Branchiostoma_floridae_tyrc Branchiostoma_floridae_tyra Branchiostoma_floridae_tyrb Branchiostoma_floridae_tyri Branchiostoma_floridae_tyrl Branchiostoma_floridae_tyrk Branchiostoma_floridae_tyrj Branchiostoma_floridae_tyrm Capitella_teleta_tyr1 Mus_musculus_Tyr Homo_sapiens_TYR Branchiostoma_floridae_tyrA1 Branchiostoma_floridae_tyrC1 Branchiostoma_floridae_tyrB1 Ciona_intestinalis_tyr Mus_musculus_Tyrp1 Homo_sapiens_TYRP1 'Ciona intestinalis tyr1/2b' 'Ciona intestinalis tyr1/2a' 'Branchiostoma floridae tyr1/2b' 'Branchiostoma floridae tyr1/2a' Mus_musculus_Tyrp2 Homo_sapiens_TYRP2a Homo_sapiens_TYRP2b Clonorhis_sinensis_tyr1 Schmidtea_mediterranea_tyr Capitella_teleta_tyr2 Streptomyces_tsukubaensis_tyr Streptomyces_venezuelae_tyr Bacillus_megaterium_tyr2 Bacillus_megaterium_tyr1 Nitrosomonas_europeae_tyr Clonorchis_sinensis_tyr5 Clonorchis_sinensis_tyr4 Clonorchis_sinensis_tyr3 Schistosoma_japonicum_tyr Schistosoma_mansoni_tyr4 Schistosoma_mansoni_tyr1 Schistosoma_mansoni_tyr3 Schistosoma_mansoni_tyr2 Clonorchis_sinensis_tyr2 Dictyostelium_discoideum_tyr2 Dictyostelium_discoideum_tyr1 Candidatus_nitrosopumilus_tyr Neurospora_crassa_tyr3 Neurospora_tetrasperma_tyr3 Neurospora_crassa_tyr2 Neurospora_tetrasperma_tyr2 Neurospora_crassa_tyr1 Neurospora_tetrasperma_tyr1 Polysphondylium_pallidum_tyr1 Nematostella_vectensis_tyr4 Nematostella_vectensis_tyr3 Nematostella_vectensis_tyr1 Nematostella_vectensis_tyr2 Hydra_magnipapillata_tyr Phragmatopoma_californica_tyr Brugia_malayi_TYR2 Brugia_malayi_TYR4 Caenorhabditis_briggsae_TYR2 Caenorhabditis_remanei_TYR2 Caenorhabditis_elegans_TYR2 Caenorhabditis_briggsae_TYR5 Caenorhabditis_briggsae_TYR1 Caenorhabditis_elegans_TYR1 Caenorhabditis_remanei_TYR1 Brugia_malayi_TYR3 Brugia_malayi_TYR1 Caenorhabditis_briggsae_TYR3 Caenorhabditis_elegans_TYR3 Caenorhabditis_remanei_TYR3 Caenorhabditis_briggsae_TYR4 Caenorhabditis_remanei_TYR4 Caenorhabditis_elegans_TYR4 Pinctada_fucata_tyr2 Pinctada_fucata_tyr3 Pinctada_fucata_tyr4 Pinctada_fucata_tyr1 Lottia_gigantea_tyr2 Caenorhabditis_briggsae_TYR6 Caenorhabditis_elegans_TYR5 Caenorhabditis_remanei_TYR5 Lottia_gigantea_tyr1 Illex_argentinus_tyr1 Illex_argentinus_tyr2 Sepia_officinalis_tyr Sepia_officinalis_Hc Megathura_crenulata_Hc Nucula_nucleus_Hc Aplysia_californica_Hc Ciona_intestinalis_HcF Ciona_intestinalis_HcE Ciona_intestinalis_HcG Ciona_intestinalis_HcH Ciona_intestinalis_HcI Ciona_intestinalis_HcD Ciona_intestinalis_HcC Ciona_intestinalis_HcB Ciona_intestinalis_HcA Aspergillus_aculeatus_tyr Agaricus_bisporus_tyr Ectocarpus_siliculosus_tyr12 Ectocarpus_siliculosus_tyr13 Ectocarpus_siliculosus_tyr16 Ectocarpus_siliculosus_tyr18 Ectocarpus_siliculosus_tyr17 Ectocarpus_siliculosus_tyr14 Ectocarpus_siliculosus_tyr15 Ectocarpus_siliculosus_tyr7 Ectocarpus_siliculosus_tyr11 Ectocarpus_siliculosus_tyr10 Ectocarpus_siliculosus_tyr8 Ectocarpus_siliculosus_tyr9 Ectocarpus_siliculosus_tyr4 Ectocarpus_siliculosus_tyr3 Ectocarpus_siliculosus_tyr2 Ectocarpus_siliculosus_tyr1 Ectocarpus_siliculosus_tyr6 Ectocarpus_siliculosus_tyr5 Dictyostelium_fasciculatum_tyr Polysphondylium_pallidum_tyr2 Lottia_gigantea_Hc Vitis_vinifera_CO Oryza_sativa_CO Glycine_max_CO12 Glycine_max_CO11 Glycine_max_CO9 Glycine_max_CO8 Glycine_max_CO10 Glycine_max_CO7 Glycine_max_CO6 Glycine_max_CO2 Glycine_max_CO1 Glycine_max_CO5 Glycine_max_CO4 Glycine_max_CO3 Tribolium_castaneum_tyr2 Tribolium_castaneum_tyr3 Tribolium_castaneum_tyr1 Drosophila_melanogaster_tyr2 Anopheles_gambiae_tyr1 Drosophila_melanogaster_tyr1 Bombyx_mori_tyr1 Bombyx_mori_tyr2 Drosophila_melanogaster_tyr3 Anopheles_gambiae_tyr8 Anopheles_gambiae_tyr7 Anopheles_gambiae_tyr5 Anopheles_gambiae_tyr4 Anopheles_gambiae_tyr6 Anopheles_gambiae_tyr3 Anopheles_gambiae_tyr2 Anopheles_gambiae_tyr9 Daphnia_pulex_tyr Epiperipatus_sp_Hc Euphrynichus_bacillifer_HcB Mastigoproctus_giganteus_HcB Euphrynichus_bacillifer_HcA Mastigoproctus_giganteus_HcA Limulus_polyphemus_HcA Limulus_polyphemus_HcB Aspergillus_nidulans_tyr2 Aspergillus_nidulans_tyr1 Amphimedon_queenslandica_tyr Saccoglossus_kowaleksii_Hc Ciona_intestinalis_tyr1 Ciona_intestinalis_tyr4 Ciona_intestinalis_tyr3 Ciona_intestinalis_tyr2 ; END; BEGIN CHARACTERS; TITLE 'Matrix in file "alignment_allin.nex"'; DIMENSIONS NCHAR=107; FORMAT DATATYPE = Protein GAP = - MISSING = ?; MATRIX Suberites_domuncula_tyr MRRHFNTEKDNATRELKSTYNFFIFLHAHSGPSFPVWHRRYMLTVEKEFQRIPYWWEGSLVFRSMHNNVHVWVGGQMDPAAVNDPIFNLHHCNFESWLKDYETYDSL Saccoglossus_kowalevskii_tyrd MRRNILEEVELYLIKAKSVYDLYTWYHAHGGPGFPTWHRYFMLLWERALQKVPYWWAGTFAFRNLHNQVHIYLNGTMSPIAPNDPIFILHHSNFEKWLRSYHDYDDI Saccoglossus_kowalevskii_tyrc MRRNILEEVELYLIKAKSVYDFFTWFHAHSGPGFPTWHRSFIQLWEMALQKVPYWWAGTFAFRNLHNQVHLYFNGTISANAPSDPIFILHHVNLEKWLRSYNDYDDI Saccoglossus_kowalevskii_tyrb MRRNILSEVKSYLLNAKNEYDLFVWNHAHAGPAFLTWHRAYLLLFERMIQQVPYWWSGEFSFRNSHNQVHSYMNGTMGETSPNDPMFWLHHSNMEKWIRSYVTYDNI Saccoglossus_kowalevskii_tyra MRRNILSEVKSYLLNAKNEYDRFVWNHAHAGPAFLTWHRAYLLLFERMIQQVPYWWSGEFSFRNSQNRVHSYLNGTMGASSPNDPMFWLHHSNMEKWIRSYVTYDNV Branchiostoma_floridae_tyrh MRRNIRQEKKRYFDRAKSVWDFFVAAHAHEGAGFPTWHRAYLLEFDRAVQEVPYWWGSVFAFRNMHNQVHIYLNGTMSPSAANDPTFFLHHCNLETWIREHEDYQEL Branchiostoma_floridae_tyre MRRNIRQEKKRYFDRAKSVWDFFVATHAHEGVGFPTWHRAYLLEFERAVQEVPYWWSSVFAFRNLHNHVHLYLDGTMSPSAANDPTFFLHHCNLETWIREHEDYQEL Branchiostoma_floridae_tyrf MRRNIREEKIRYFNRAKSVYDFFVATHAHEGVGFPTWHRAYVLEIERALQEVPYWWSSAFTFRNVHNQVHIYLNGTMSPSAANDPTFFLHHCNLETWIREHEDYQQL Branchiostoma_floridae_tyrg MRRNIREEKDRYFDRAKSVWDFFVAMHAHKGPAFTTWHRAYLLEFERAVQVVPYWWSSVFAFRNMHNQVHIYLNGTMSPSAPNDPMFFLHHCNFEAWIREHKNYEEL Branchiostoma_floridae_tyrd MRRNIKEEKNCYFNRAKSVYDFLVATHAHDGSGFLTWHRAYVLEVERALQEVPYWWGSLFAFRNLHDEVHIYLNGTMSPTAPNDPMFFLHHCNLETWIREHEDYQEL Branchiostoma_floridae_tyrc MRRNIKEEKNRYFNRAKSVYDFLVAMHAHDGSGFLTWHRAYVLEVERALQEVPYWWGSLFAFRNLHDEVHIYLNGTMSPTAPNDPMFFLHHCNLETWIREHEDYQEL Branchiostoma_floridae_tyra MRRNIRKERARYMDRAKSVYDYFVAVHAHEGAGFPTWHRAFLLEAERALQEVPYWWSSIFAFRNLHNHVHLYLNGTMSITAANDPIFLLHHSNFETWIREYEDYQEL Branchiostoma_floridae_tyrb MRRNIRKERARYMDRAKSVYDYFVAVHAHEGAGFPTWHRAFLQEAERALQEVPYWWSSSFAFRNLHNHVHLYLNGTMSITAANDPIFLLHHANFETWIREYEDYQEL Branchiostoma_floridae_tyri MRKNILEERSRYFNNTKSVWDFFMATHAHEGVGFPTWHRAYVLEFERAVQEVPYWWSSVFAFRNLHNHVHIYLDGTMSPSAANDPIFFLHHCNFETWIREYEDYQEL Branchiostoma_floridae_tyrl MRRNIREDVERYFNAAKSVYNYFVATHAHEGSGFPTWHRAFLLDLERALQEVPYWWTSLFAFRNLHNHVHLYLDGTMSPSSANDPIFFLHHCFFEKWIREYADYEDV Branchiostoma_floridae_tyrk MRKNVMEDRVTYLNRAKSVYDLLVWMHAHDAVGFLTWHRGYLLEMERSIQEVPYWWTSAFAFRNLHNHVHLYLNGTMSPSSANDPIFWLHHAFFEKWLREYDDFEGV Branchiostoma_floridae_tyrj MRKNVTEDRVTYLNRAKSVYDLLVWMHAHDAVGFLTWHRGYLLEMERLIQEVPYWWTSAFAFRNLHNHVHLYLNGTMSPSSANDPIFWLHHAFFEKWLREYDDFEGV Branchiostoma_floridae_tyrm MRKNVLEEKAAYINNTKSAYDFFVYLQSQGSAGFATWNRAFLVAFELAVQVVPYYWTSVFSFRNLNEQVHQSLGGTMSWQASNDPIFYLHRCFFEKWMRENADYADI Capitella_teleta_tyr1 MRRNALEEKARVFDLAKSVYDYLVHVHAHNGPGFLTWHRLYLMMMEREMGRVPYWWSSPFSFRNMHIQVHSFFRGTISSSSPDDPLFFFHHTYFEVWLRDVDDYDQT Mus_musculus_Tyr MRRNIFSEKNSYLTLAKNIYDLFVWMHAHEAPGFLPWHRLFLLLWEQEIRELPYWWRSFFSFRNMHNALHIFMNGTMSQGSANDPIFLLHHAFFEQWLRSYDDYSYL Homo_sapiens_TYR MRRNIFPEKDAYLTLAKNIYDLFVWMHAHEAPAFLPWHRLFLLRWEQEIQKLPYWWRSFFSFRNMHNALHIYMNGTMSQGSANDPIFLLHHAFFEQWLRSYDDYSYL Branchiostoma_floridae_tyrA1 MRRNIFWERTRALDESKTTYDALVWMHAHEGPAFLPWHRLYLLLLERELAKIPYWWRSFLSFRNLHAAVHVWMNGTVSAASPNDPVFFLHHAFYEVWLRSYDDYDFM Branchiostoma_floridae_tyrC1 MRRNIFWERRRALDESKTTYNVLAWMHAHEGPVFLPWHRLFLLLWERELARFPYWWRTVFSFVNLHNAVHRFMNGTLSGSSANDPIFIIHHAYYEVWLRSYDEYDYL Branchiostoma_floridae_tyrB1 MRRNIFWERRRALDESKTTYNVLAWMHAHEGPVFLPWHRLFLLLWERELARFPYWWRTVFSFVNLHNAVHRFMNGTLSGSSANDPIFIIHHAYYEVWLRSYDEYDYL Ciona_intestinalis_tyr MRRNFTTDIQTILDESKSVYNLFVWMHAHEGPAFLPWHRYYLLKWEQELRDVPYWWRSPISFRNLHNAVHLFMNGTMSATSANDPIFVLHHAYYELWLRDFRVYDYM Mus_musculus_Tyrp1 MRRNLLEEKSRALDMAKSVYNYFVWTHSHEGPAFLTWHRYHLLQLERDMQEMPYWFASVFSFRNLHNLAHLFLNGTGGHLSPNDPIFVLLHTFFDEWLRYNNAYEVQ Homo_sapiens_TYRP1 MRRNLLEEKNRALDMAKSIYNYFVWTHSHEGPAFLTWHRYHLLRLEKDMQEMPYWFASVFSFRNLHNLAHLFLNGTGGHLSPNDPIFVLLHTFFDEWLRYNNTYEIQ 'Ciona intestinalis tyr1/2b' MRQNIMEERNDILDLSKSIYDLFVWVHSHEGPAFLTWHRMHLLGLENDLQDLPYWFASRFAFRNLHNLAHLFLNGTGGHASANDPIFVLLHTFFEEWMLFNQSYAVQ 'Ciona intestinalis tyr1/2a' MRQNIMEEREDVLDLSKTIYDLFVWVHSHEGPAFLTWHRMHLMGLENDLQVLPYWFASTFAFRNLHNLAHLFLNGTGGHASANDPVFVLLHTFFDEWMKFNQSYAVQ 'Branchiostoma floridae tyr1/2b' MRKNIKEERRDALDQAKTIYNLFVWMHAHEGPAYNTWHRMHLLWLEREMQKMHYWWASPFSFRNLHNLAHLFLNGTGGHASANDPIFVLLHSYFDAWLRNTDAYDV- 'Branchiostoma floridae tyr1/2a' MRKNIKEERRDALDQAKTIYNLFVWMHAHEGPAYNTWHRMHLLWLEREIQKMHYWWASPFSFRNLHNLAHLFLNGTASHASANDPIFVLLHSYFDAWLLNTDAFDA- Mus_musculus_Tyrp2 MRRNIHQEREGALDLAKSVYDFFVWLHSHQGPAFVTWHRYHLLWLERELQRLPYWFASRFSFRNLHNLAHSFLNGTNAHSAANDPVFVVLHSFFDEWLKYNQNYAVD Homo_sapiens_TYRP2a MRQNIHQEREGALDLAKSVYDFFVWLHSHQGPAFVTWHRYHLLCLERDLQRLPYWFASRFSFRNLHNLVHSFLNGTNAHSAANDPIFVVLHSFFDEWMKYNQSYAID Homo_sapiens_TYRP2b MRQNIHQEREGALDLAKSVYDFFVWLHSHQGPAFVTWHRYHLLCLERDLQRLPYWFASRFSFRNLHNLVHSFLNGTNAHSAANDPIFVVLHSFFDEWMKYNQSYAID Clonorhis_sinensis_tyr1 -----------------SIYDYFVFLHAHKGPGFPTWHRAYVLFVEEELGRLPYWWTSPFAFRDMHNLVHSYFNGSWFATSPNDPIFFLHHTFFELWIR-------- Schmidtea_mediterranea_tyr ------YDVFSVLNISKSIYDTMVYLHAHKGPAFFTWHRHYLLMFEDLLRSIPYWWTSTFFFRNMHNMVHSFINGTWMTTSPNDPLFLLHHTFFEIWLLDFEAYDNN Capitella_teleta_tyr2 MRKNALAEKKDTLTKLKSIYDTLTFLHAHNGPGFPTWHRRFLLEFERELQRAPYWWTSDFWFRNLHGQGHTFFSGSVNPISPSDPLFYLHHAYLEVWLRDYEDYDDM Streptomyces_tsukubaensis_tyr MRKNQAAEKKDAVLEVKGIYDEFVAAHGHFGPSFLPWHRKYLIDFERELQKIPYWWTGPFAFRSMHNRVHTWVWGQMESVSPNDPVFWLHHAFWADWHAETQIY--- Streptomyces_venezuelae_tyr MRKNQADEKRNALLELKGRYDTFVTTHGHRSPSFLPWHRRFLIEFEQALQSVPYWWTGPFAFRNLHNRVHVWVGGQMGGVSPNDPVFWLHHAFWADWQADTRTFDT- Bacillus_megaterium_tyr2 MRKNVLTEKRRTVLILKGIYDRYIAWHAHMSSAFLPWHREYLLRFERDLQSIPYWWEGPFAFRNLHNRVHRWVGGQMGPTAPNDPVFFLHHANWAVWQIDPKVYDIE Bacillus_megaterium_tyr1 MRKNVLTEKRRTVLILKGIYDRYIAWHAHMSSAFLPWHREYLLRFERDLQSIPYWWEGPFAFRNLHNRVHRWVGGQMGPTAPNDPVFFLHHANWAVWQIDPKVYDIE Nitrosomonas_europeae_tyr MRKDANAERAAAIRVLKGIYDRFVLRHIHRCSAFLPWHRRFIYDLELELQRVPYWWPGPFRFRNLHNRGHVWVGGSMLMTSPNDPVFFMHHCMWHEWQLDPAVYDDA Clonorchis_sinensis_tyr5 MRRDIRDELNDVLARSWSVQYYITFLHSHDGPEFPTWHRYLMLIWERLLAEIPYWWVSIFYFHMMHNKVHNMIDGAMRATATNDPFFILHHNFLSMWYRAFNDYDQP Clonorchis_sinensis_tyr4 MRRDIRDELNDVLARSWSVQYYITFLNNHDGPTFPTWHRYLMLIWERMLAEIPYWWVSIFYFHMTNNKVHNMIEGSMQATATNDPIYILHQVFLSMWYRAFNDYDKP Clonorchis_sinensis_tyr3 MRRNIRDELEDVMYRSQSVQYWAAFIHSHDGVTFPTWHRYFQLIWERMLSNIPYWMISAFTFHMMHNRLHRMINGSMCSTATNDPIFIVLHNFFNAWLRAFQDYDN- Schistosoma_japonicum_tyr MRRDIKKELHTVIVLSQSIQYYLTYVHNHDGVCFPTWHRYYILLWERLMSRIPYWWVSPFHFHMFHNKVHVLIDGSMCGTASNDPIFVLHHALFDCWLRSFYFYDT- Schistosoma_mansoni_tyr4 MRRDIRKELHTVIVLSQSVQYYITYLHNHDGVCFPTWHRYYGLLWERLMSKIPYWWTSPFSFNIFHNKLHVLVDGSMCGTASNDPLFILHHTFFECWLKSFNYYDN- Schistosoma_mansoni_tyr1 MRRDIRKELHTVIVLSQSVQYYITYLHNHDGVCFPTWHRYYGLLWERLMSKIPYWWTSPFSFNIFHNKLHVLVDGSMCGTASNDPLFILHHTFFECWLKSFNYYDN- Schistosoma_mansoni_tyr3 MRRDIRKELHTVIVLSQSVQYYITYLHNHDGVCFPTWHRYYGLLWERLMSKIPYWWTSPFSFNIFHNKLHVLVDGSMCGTASNDPLFILHHTFFVLVKDSFNYYDN- Schistosoma_mansoni_tyr2 MRYNILKKRKNVVTRMLDVQYLFSFIHNHEVVGFLTWHRYYMLFWERHLRKIPYWWVSPFYFHQMHNKVHNVVSGTFCATSPNDPLFLVHHTQFQLWFMCNLTYDN- Clonorchis_sinensis_tyr2 MRRNVMKEKRDIVAHMPHLQYLIAYLHNHHVLGFATWHRYFMLVWERQLRKIPYWWISPFSFHQMHNKVHNMVHGSFCSTAANDPLFLLHHSQMQVWFECNQYYDN- Dictyostelium_discoideum_tyr2 MRKNAAEERNVAIVGLKSVYDQFVILHGHGNPAFLSWHRMLLNKFEKALQTIPYWWTSVFTFRIAHNPTHDWYISTMTACSNNDPIFWLHHCNWADWQDDPSQYDTS Dictyostelium_discoideum_tyr1 MRKNAAEERNVAIVGLKSVYDQFVILHGHGNPAFLSWHRMLLNKFENALQTIPYWWTSVFTFRIAHNPTHDWYISTMTACSNNDPIFWLHHCNWADWQDDPSQYDTS Candidatus_nitrosopumilus_tyr MRKNASIEREKAVLTLKNRYDEFVAIHAHGNSGFLPWHREFLCRFEHALKSVPYWWSGYFSFRSPHNHVHGVTQGHMGMTSPNDPIFFLHHANWAEWQRDPCDTDPI Neurospora_crassa_tyr3 MRRELRNYPELYLLGLRDSYYQVAGIHTHSSILFITWHRPYLALYEQALYASPYFWAINNPLEDVHNEIHDRTNGHMSEVSAFDPLFWLHHVNWSIWQDTPTAYPET Neurospora_tetrasperma_tyr3 MRRELRNYPELYLLGMRDSYYQVAGIHTHSSILFITWHRPYLALYEQALYASPYFWAINNPLEDVHNEIHDRTNGHMSEVSAFDPLFWLHHVNWSIWQDTPTAYPET Neurospora_crassa_tyr2 MRQEIRQDKELYILGLSVSWYGITGIHTHSSILFPTWHRPYLALYEQVLYNLPYWWAIANPLEAIHDTVHNLAGGHMAPYSSFDPIFFLHHAMFAIWQSTPRTYPEL Neurospora_tetrasperma_tyr2 MRQEILQDKELYILGLSVSWYGITGIHTHSSILFPTWHRPYLALYEVLLYNIPYWWRIANPLEAIHDTVHNLAGGHMIPYSSFDPIFFLHHAIFAIWQATPYTYPEL Neurospora_crassa_tyr1 MRRNINPQWDLALSEMQLSYFSLAGIHPHGETIFASWHRPYVALFEQTLVSHPFWWANSNGFEDPHNTVHNNANGTMAAWSAFDPLFMLHHANIALWQVSPTTYPEL Neurospora_tetrasperma_tyr1 MRRNINPQWDLALSEMQLSYFSLAGIHPHGETIFAPWHRPYVALFEQTLVSHPFWWANTNGFEDPHNTVHNNANGTMAAWSAFDPLFMLHHANIALWQASPTTYPEL Polysphondylium_pallidum_tyr1 MRKSIRSERSYRVTILKGVYDKFVAEHIHGTDIFLPWHRIFVRKFEEEMRLAPYWWEGPFAFRKYHNRVHRFVGGDMSHTSANDPVFWLHHCNWAQWQTHVQEWNKD Nematostella_vectensis_tyr4 MRKDFEPERRQTLKKASSEYDRITKYHVHILEYFFPWHRWYLLLFENLLRKIPYWWSGPLRFEDMHNDFHNAIGGVMSDASANAPEFWFHHGYWSDWQKDLKVYDDP Nematostella_vectensis_tyr3 MRKDFPEERRSALIRVSKTYDKLTHLHVHNKKNFFPWHRWFILNFENFIRKIPYWWSGPFRFEDIHDEFHNAVGGTMMACSSNAPEFWFHHGFWSDWQNLLRALEQP Nematostella_vectensis_tyr1 MRKDFIGDRRAAFKKLTKEYDTIVRVHIHSARYFLPWHRQFLLNLENQMRKIPYWWTGPFRFETFHHFVRCAIGGTACLDSARSPEFLLITAYWGDWQAEVVAYERS Nematostella_vectensis_tyr2 MRGEFTEERARAFYKATDDFEKLLIEHHHMPQIFFPWHRWYLSKIESFLKMIPYWWTGIFRFERFHNRFHDCVGRLMHVTASDTPEFPLHHAFWDMWEKEYNMYEDY Hydra_magnipapillata_tyr MRREFSEERDNTFKEFSEIYEKFVMSHIHEAKQFYPWHRSYILKFESLLRVIPFWWAGIFNFERWHNTIHKAIGGHMGEYASYSPEFWSHHAMWFEWQKDYGVYDSI Phragmatopoma_californica_tyr MRKAYRSERKDAIYQLKSNYDLFVNLHAHGGHAFAGWHRHCLYRFEKALQEICYLTT-------------------------------------------------- Brugia_malayi_TYR2 MRKEYREERQSALNRLKGDYDKIAQWHAHSGPAFLPWHREYIKRLEIALRLIPYWSTGFISLEYSHANALVWIGGDMFITSANDPLFFLHHVFWEYWRQNSEKYAPR Brugia_malayi_TYR4 MRKEYRDERLNALNVLKGEYDRISMEHAHSGPGFLPWHREYIKRFEIALRLIPYWSVGPFALEYSHSNVHLWIGGHMKEQSSNDPIFFSHHAFWELWRQALDRFAPR Caenorhabditis_briggsae_TYR2 MRKEYRAERANALNTLKGEYDRLSRQHAHSGPGFLPWHREYLKRFEIALRMVPYWSVGPFAIEYSHSNIHLWIGGDMKSTSANEPIFFMHHSFWELWRQAPDRYAPR Caenorhabditis_remanei_TYR2 MRKEYRDERRNALNTLKGEYDRLSRQHAHSGPGFLPWHREYLKRVEIALRMVPYWSVGPFAIEYSHSNIHLWIGGDMKSTSANEPIFFMHHSFWELWRQAPDRYAPR Caenorhabditis_elegans_TYR2 MRKEYRDERRNALNTLKGEYDRLSRQHAHSGPGFLPWHREYLKRVEIALRMVPYWSVGPFAIEYSHSNIHLWIGGDMKSTSANEPIFFMHHSFWELWRQAPDRYAPR Caenorhabditis_briggsae_TYR5 MRKEYRNERVNAIMQLKGEYDRLSVMHAHSGPGFLVWHREYMKRMEIALRMIPYWSVGPFALEYTHASIHLWMGGDMKSTSANDPIFFLHHTFWEMWRQAQDHYAPR Caenorhabditis_briggsae_TYR1 MRKEYRNERVNAIMQLKGEYDRLSVMHAHSGPGFLVWHREYMKRMEIALRMIPYWSVGPFALEYTHASIHLWMGGDMKSTSANDPIFFLHHTFWEMWRQAQDHYAPR Caenorhabditis_elegans_TYR1 MRKEYRNERQNALIQLKGEYDRLSVMHAHSGPGFLVWHREYMKRMEIALRMIPYWSVGPFALEYTHASIHLWMGGDMKSTSANDPVFFLHHTFWEMWRQAQDHYAPR Caenorhabditis_remanei_TYR1 MRKEYRNERTNAIIQLKGEYDRLSVMHAHSGPGFLVWHREYMKRMEIALRMIPYWSVGPFALEYTHASIHLWMGGDMKSTSANDPVFFLHHTFWEMWRQAQDHYAPR Brugia_malayi_TYR3 MRKEIRNERETAIQQLKGEYNRLADIHAHAGPSFLLWHREFIKRMEIALRLIPYWSSGPFALEYYHASVHIWIGGDMKLTSANDPVFFLHHSFFENWRQANDTYAPR Brugia_malayi_TYR1 MRKEYRQERKNALIQLKGEYDKLALIHAHSGPAFLPWHREFIKRFEIALRQIPYWSVGDFALEYTHGNVHIFVGGDMYYTSGNDPLFYLHHSFWEMYRQTLDEYAPR Caenorhabditis_briggsae_TYR3 MRKEYRDERNQAFRTLKGEYDRLARVHAHSGPAFLPWHREFVKRMEFLIRQVPYWSTGPFRPEYTHGNPHIYVGGDMLSTAANDPIFWMHHSFWEQYRQAFDSFAPR Caenorhabditis_elegans_TYR3 MRKEYRDERQQAFRTLKGEYDRLARVHAHSGPAFLPWHREFVKRMEFLIRQVPYWSSGPFRPEYTHGNPHIYVGGDMLSTAANDPIFWMHHSFWEMYRQAFDSYAPR Caenorhabditis_remanei_TYR3 MRKEYRDERNQALRTLKGEYDRLSRVHAHSGPAFLPWHREFVKRMEFLIRQVPYWSTGPFRPEYTHGNPHIYVGGDMLSTAANDPIFWMHHSFWEQYRQAFDTFAPR Caenorhabditis_briggsae_TYR4 MRKEYRDERNAAFRALKGEYDRIGRIHAHSGPAFLPWHREFVKRVEFALRQVPYWSTGPFTLEYTHGNVHIFVGGDMFATSSNDPSFFLHHSFWEMWRLSPDSYAPR Caenorhabditis_remanei_TYR4 MRKEYRDERNAAFRALKGEYERIGRIHAHSGPAFLPWHREFVKRVEFALRQVPYWSTGPFTLEYTHGNVHIFVGGDMFATSSNDPSFFLHHAFWEMWRLSPDSYAPR Caenorhabditis_elegans_TYR4 MRKEYRDERNAAFRALKGEYERIGRIHAHSGPAFLPWHREFVKRVEFALRQVPYWSTGPFTLEYTHGNVHIFVGGDMFATSSNDPSFFLHHAFWEEWRLSPDSYAPR Pinctada_fucata_tyr2 MRQECRGARGGAIVDLKSRYDTIAGMHAHLGPSFLGWHRVYLIMYEEALQEICYWSTGAFAWEQEHDNTHVWVGEIMRVAAPGDPVFFFHHTFWELFRQAP------ Pinctada_fucata_tyr3 MRQECRGARGGAIVDLKSRYDTIAGMHAHLGPSFLGWHREYLIMYEEALQEICYWSTGAFAWEQEHDNTHVWVGEIMQVAAPGDPVFFFHHTFWELFRQAPRMYAPH Pinctada_fucata_tyr4 MRQECRPDRNGAIVTLKSRYNTLAAMHAHNGPNFLGWHRVYLNMYEEALQEICYWSTSQFAWEREHDNTHVWVGGIMVERSPEDPVFWFHHLYWELFRRQTRMYAPH Pinctada_fucata_tyr1 MRRECREEWRNAIRRLKNRFDTMARIHAHDGSSILGWHRVFLYLFENALRRKCYWSTGPFALEAEHNNAHVAVGALMAPNAAWDPLFYFHHCYWQLFRRAPQRYHFH Lottia_gigantea_tyr2 MRRDCRDELSGAVQDAKNVLDAFSFLHAHGGVGFLPFHRVFLYLYEKLLRQYCFWPTGFAASENLHNHVHLYIGGLMAETAAYDPIFWFYHVYFEEFREEPGFFSDR Caenorhabditis_briggsae_TYR6 MRRELREDRRDAWNAMKGLYNKIGRVHVHSGPAFTLWHREFLKRLELALRDHPFWSTGPYHLEFSHDYVHFFVNGDMSYSSSNDVCFVYHHGMFENWRQNSDEYYPR Caenorhabditis_elegans_TYR5 MRRELRDDRINAWNAMKGLYNKIGRVHVHSGPAFTLWHREFLKRLELALRDHPFWSTGPYHLEFSHDYVHFFVNGDMSYSSSNDVCFVYHHGMFEHWRQNSDEYYPR Caenorhabditis_remanei_TYR5 MRKEIRSELRIAMNGLKTAWDLHTLVHAHWGPAFLPWHREFLRQFEIALQTEPYWSTGPFAFESMHGLSHVWVGGFMYRVSPNDPTFYMHHAFWEKFRQVQDEYQPV Lottia_gigantea_tyr1 MRKEYRAERDNAINALKNMYDAVAMFHAHGGPGFLGWHRMYLVMYERALQSKPYINTGPFALEHHHGSYHIHVGGLMEDTASFDPVFFMHHAYWEQFRQNVLEYQPS Illex_argentinus_tyr1 MRKEYREERDRAIVMLKNKFEIIADLHAHGGPGFLPWHRIYMMIWEEGLREQPYWVTGPFAFELYHNNIHDWIGGTVSAWASFDPAFMLIHGYWYRFQEGENYEEAQ Illex_argentinus_tyr2 MRKEYREERDRAIVMLKNKFEIIADLHAHGGPGFLPWHRIYMMIWEEGLREQPYWVTGPFAFELYHNNIHDWIGGTVSAWASFDPAFMLIHGYWYRFQEGENYEEAQ Sepia_officinalis_tyr MHKEYREEREQAIIMLKNKFEVIADLHAHGGPGFLPWHRIYMMIWEEGLREQPYWVTGPFAFELYHNNIHDWIGGTVSAWASFDPAFMLIHGYWYRFQEADNYEEAP Sepia_officinalis_Hc MRKNVDDEILIALRNMQTGYQAISAYHLHGMPTFPMWHRLYMVQFEQAVAGHPYWWTENRVFEVAHNPIHYLVTHSMSEYTSYDPLFFLHHSNFALWQASPHEYDDL Megathura_crenulata_Hc MRKNVDDEVLKALDDLQQGYQAIAGYHLHGMPSFPLWHRLYVVQLERALIRKPYWWTLNKKFEIAHNAIHYLVTYSMSEYTSYDPLFFLHHSNFAIWQRTPRQYDDL Nucula_nucleus_Hc MRKDVDAEVLEALKEVQTGYQAIAAYHIHGMPTFPQWHRLFTTQMEQALRQKPYWWTAGTTFEIAHNDIHYLVGKSMSEYTSYDPIFFLHHSNFAIWQATPNQYHDL Aplysia_californica_Hc MRKSVDEEILKSLREVNLGYAAIASYHLHGSPVFPQWHRLYVVQMEQALKAKPYWWTDGQVFEVAHNTIHYLVKYSMSEYTSYDPIFFLHHSNLAVKLATPTSYDDL Ciona_intestinalis_HcF MRKNLLEELHQGFTKFKFGYLNIAKWHWHNHPMFLPWHRLIMVQLELGLSRHPYWWTHPLVFDMAHGQVHNCMTYSMLAYSCFDSAFFLHHSQYALYQKWPLKYDSF Ciona_intestinalis_HcE MRKNLLEELHQGFTKFKFGYLNTVKWHWHQHPMFLPWHRLIMVQLELGLSRHPYWWTHAPVFDMSHSQIHNCMTYSMLEYSCFDPTFFLHHSQYALYQKWPLKYDTF Ciona_intestinalis_HcG -----------------------------------------------GLSRHPYWWTHTLVYDDSHDQIHNCMTYSFDGFSAFEPAFLLHHSQYALYQKWPLKYDTF Ciona_intestinalis_HcH -----------------------------------------------SLSRHPYWWTHAKVFDDSHDQIHNCVTYSMDDYSAFDAMFFLHHSQYALFGHWPLKYDTF Ciona_intestinalis_HcI ---------------------------------FLPWHRLIMVQLELGLSRHPYWWTHAPVFDFSHDDIHNCVTYSMVDFAAFDALFFLHHSQFALFAHWPLKYDTF Ciona_intestinalis_HcD MRKNIREETFQAMAQFKNGYTNIVSWHWHSDLRFCAWHRLIMVQLEMGLSKYPYWWTHKPIFDDPHNQIHRCFDYGMPTYAGWDPAFLLHHSQYALYRLMPLRYDNF Ciona_intestinalis_HcC MRKNIREETFQAMARFKDGYTNIVSWHWHVDLRFCAWHRIFMVQVEMGINKYPYWWTHKPI---------------------------------------------- Ciona_intestinalis_HcB ------------------------------------------------LNKYPYWWTHKPIFDLPHNQIHVCFHYGMPPYAAWDPAFLLHHSQYALYRLMPLRYDNF Ciona_intestinalis_HcA -------------------------------------------------------------FDKPHNQIHMCMTYGMPKYAAWDPIFLLHHSQFALFKLMPLRYDNF Aspergillus_aculeatus_tyr MRQDLAVQVSRALDKLQLSYFRLAGIHHHNDYLFPTWHRPYMLLYEQCLHDIPYWWAFKFVLEMVHNNIHEWSQGHMAPVSSFDPVFWMHHCNLAIWQYSVQNYPEL Agaricus_bisporus_tyr MRLNILKFFTRALQVLQSSFFQLGGIHTHGTVLFPTWHRAYESTWEQTLCEAPFWWGGDFALEMVHNTVHFLIPGHMGPHAAFDPIFWMHHCNLALWQTSPTSYPDF Ectocarpus_siliculosus_tyr12 MRREVREDREDAMEKLYKGISFFVQMHWHDDAGIMTHHVGYTMLFEQALQVVPYWYTGRWALFNTHGPVHIKMGGEWNSSAPYDPLFWVIHPTWRRKLGDDDMYNEY Ectocarpus_siliculosus_tyr13 MRREIRKDREDAMETLYKGINFFVQMHWHDDAGIMTHHVGYTLLFEQALQVVPYWYTGRWAMNNTHGPVHIKVGGEWNSSAPYDPLFWVIHPTWKRKLAGDEMYDSF Ectocarpus_siliculosus_tyr16 MRREIRRDRENAVSVLQYSKDYFNRLHWHDGAGFVTSHIALSLMYEQALQSVPYWFTGRFGLTEAHGHIHELLGGAWSGTSTNDVTFWVLHPTWHLNRLADSMYAHF Ectocarpus_siliculosus_tyr18 MRREIRRDRENAVSIMQYSKDFFNRIHWHAGAGFVTSHIAVSLMYEQSLQAIPYWFTGRFGLTEAHGEIHELLGGAWSATSTNDPTFWLIHPTWHLRRLDDDVYDNF Ectocarpus_siliculosus_tyr17 MRREIRRDRENAVAVLQYSKDYFNRMHWHAGAGFVTSHIAITLMYEQALQAVPYWVTGRFALTEAHGNIHGLLGGTWSATSTNDVTFWVLHPTWHLSRLDDQMYDNF Ectocarpus_siliculosus_tyr14 MRREIRRDRENAVSVLQYSMDYFTRMHWHEGTGFMNAHMGFTLMFEQALQSVPYWFTGRFGLSAAHGHIHEIVGGAWSATSTIDPIFWVIHPTWQLRRLGDEVYDNF Ectocarpus_siliculosus_tyr15 MRREIRQDRENAMAVMQYSKDYLTRLHWHQGAGFVTSHMALTLMFEQSLQAIPYWFTGRFGFSMAHGHIHETVGGSWNATSTNDITFWVLHPSWHLKRLADDVYDNF Ectocarpus_siliculosus_tyr7 MRREIRDERDDAMKVLWLDVWTIDQFHLHDGIGFGITHSMVTMMFENSLQLVPYWFTGRWGYTWPHGPVHVWVGGNVDSSSPLDPTFWSMHPTFKLLAGSDAIYDNF Ectocarpus_siliculosus_tyr11 MRREIRDEREDAMFALWADIYAINRLHFHDGLGFLTSHSMISNTFEFSLQKVPYWFTGRWAWVWPHGPVHIWVGGVLDASSSLDPSFWSTHPTYVVLTGSDAVYDTF Ectocarpus_siliculosus_tyr10 MRREIREDREDAMLELWSDIWAINRLHFHDGLGFLTNHGLISNTFENSLQQVPYWFTGRWAWVWPHGPVHIWIGGVMDSSSSLDPSFWSTHPTYSVLTGSDAVYDTF Ectocarpus_siliculosus_tyr8 MRREIRDEREDAMFTIWADIYAINRLHFHDGLGFLVSHSVLTNTFEYSLQAVPYWFTGRWAWVWPHAPLHLWLGGTMDSSSSYDPLFWPIHPTFPVLTGSDSVYDKF Ectocarpus_siliculosus_tyr9 MRREIRDEREDAMFTLWADIYAINRLHFHDGLGFLTSHSLISNTFEYSLQRVPYWFTGRWAWVWPHGPVHTWIGGVLNAGSSLDPTFWPMHPTFARLTGSDQVYDTF Ectocarpus_siliculosus_tyr4 MRRELRADREDAMEAYYFDYQLLASYHYHAGVQFLTAHAAFGLMLERSLQKIPFWYMGRFGWEHVHGDMHGLLGGAFKGVSPMDPLFWVLHPMLHVLWMDDRVFEKF Ectocarpus_siliculosus_tyr3 MRREIRGDREDAMETWYSNYMSIAAIHYHQGMQFLTSHAAFDLIVERYLQMIPVWYMGRFGWEEIHGDIHGLLGGAFDAASPVDPIFWVLHPLMHVLLLTD------ Ectocarpus_siliculosus_tyr2 MRREIRRDREDAMQTWYSNYMPVTAIHYHQGMQFLTSHAAFDLTMERYLQMIPVWYMGRFGWEYIHGDIHGLLGGAFDTASPVDPLFWVLHPLMHILLLTDAVYTDL Ectocarpus_siliculosus_tyr1 MRREIRRDREDAMLIWYSNYQVITAYHYHIGLQFLTSHAAFDLTMERYLQMIPMWFMSRFGWESVHGDIHGLLGGAFSLASPLDPLFYMLHSMLHIVWLTDAIYEDF Ectocarpus_siliculosus_tyr6 MRRELREDRTAAMREFYSNAKHVAAYHFHNGMHFLNAHAAFDLWVEKNLQKIPQWYMGWFSWASVHASIHGMIGGGFDGAAPLDPIFWTLHSGQHILQLDDKLYEAF Ectocarpus_siliculosus_tyr5 MRRELRADRTSAMREFYANSKIISTYHFHSGMHFLNAHASFDLWAERSLQMIHYWFTGWFAWNEVHAANHGMMGGAFNGPSILDPVFWALHPITQILQLDERVYDKF Dictyostelium_fasciculatum_tyr MAPQFQQVPQIAPNHVFKWWREDPHWNDRQGELFVFMHRQMVARYDCEIESLPFGNTGTHPYGNLNKQAHNLMLGIMGIGAFRDPLFWRWHKHFHRFEIQPPEINVE Polysphondylium_pallidum_tyr2 MSPHFQQVPQIAPSHVFKWWREDPHWNDRQGELFVFMHRQMVARYDCELQPIQFGNSGTPPYGNLNKQAHNLMIGIMGIGAFRDPMFWRWHKHFHRFELKQPEISVL Lottia_gigantea_Hc MRYSLRKKKNKAWKLVKNSFWSIASYHQHSNVLFPTWHRFYCLRMEQALQTVHYWTTGYTTFSNPHNDIHLSINGEMGEVAAFDPIFFSHHSNFWIWQRDTQTYSRG Vitis_vinifera_CO MRRAAHDYIANAVSIMKRSFLSQANLHVHRSWLFFPWHRMMLYFHERILGSLPFWWDEMYVIELPHNTLHDWTREDMGYSAGRDPIFYGHHGNWEVWRREWRAYEEV Oryza_sativa_CO MRPAAHAYLARAVSLMKRSFEQQWRVHIHSCWLFFPWHRMYLYFHERILGKLPFWWDAMYAVESPHNPVHRWTGEDMGYSAARDPVFFAHHGNWHIRRGDWATYQDV Glycine_max_CO12 MRPAAHEYLAKALDLMKRNFTQQANVHIHNSWLFFPFHRWYLYFYEKILGSLPFWWDSIYAVENPHGSVHLWTIEDMGYSAARDPIFFSHHSNWSIWKTDWKVYQDV Glycine_max_CO11 MRPAAHEYLAKALDLMKRNFTQQANVHVHNSWLFFPFHRWYLYFYERILGSLPFWWDSIYAVENPHGPVHLWTIENMGYSAARDPIFYSHHSNWSIWKTDWKVYQDV Glycine_max_CO9 MRPAAHNYLAKAIDLMKRNFMQQANVHVHSSWLFFPYHRWFLYFYERILGSLPFWWDSIYAVEGPHGPVHLWTIENMGYSAARDPIFYSHHSNWSIWKTDWKVYQDV Glycine_max_CO8 MRSAAHDYLAKAVNLMKRSFAQQAKVHVHFSWLFFPYHRWYLYFHERILASLPFWWDSMYAVESPHGPVHAWTMEDMGYAAARDPIFYCHHSNWSIWKTDWKVYQDV Glycine_max_CO10 MRPAAHVYIAEALKRMKRNFTQQANVHVHNCWLFFPYHRWYLYFYERILGNLPFWWDSFYVLENPHGPVHSWTRENMGYSAARDPIFFSHHANWSIWKTDWKVYQDV Glycine_max_CO7 MRPPAQEYLELALKRMRRSFKQQADIHVHFSWLFFPFHRWYLYFYERILGSLPYWWDLIYRVELPHTALHRWTKEDMGYSAGRDPIFYSHHANWNIWKTDWKVYQDV Glycine_max_CO6 MRPPAQEYLELALKRMRRSFKQQADIHVHFSWIFFPFHRWYLYFYERILGSLPYWWDSIFAVELPHTAVHRWTKEDMGYSAGRDPAFYSHHANWNIWKTDWKVYQDV Glycine_max_CO2 MRPAAHDYIAEAVRRMQRSFMQQANVHVHGSWIFFPWHRWYLYFYEKILGKMPFWWDPIFTLESLHNTVHSWTHHDMGATAAKDPIFFAHHSNWNIWKTDWKDYQRV Glycine_max_CO1 MRPAAHDYIAEAVRRMQRSFMQQANVHVHGSWIFFPWHRWYLYFYEKILGKMPFWWDPIFTLESLHNTVHSWTNHDMGATAARDPIFFAHHSNWNIWKTEWKDYQRV Glycine_max_CO5 MRRPAQDYLNEAVRLMRRNFMQQAKIHVHGNWLFAPFHRWYLYFHERILGSLPFWWDAIYTLEKPHNNVHRWTRIDMGAWAARDPIFFAHHSNWNIWKTDWKDYEYV Glycine_max_CO4 MRKPAHEYIAKGIALMKRNFIQQAKVHIHRSWFFFPFHRWYLYFFERTLGKLPFWWDSYFNIEAPHNTVHTWVHEDMGYTAARDPIFYAHHPNWGLWKTDWKVYEDV Glycine_max_CO3 MRKPAHEYIAKGIALMKRNFIQQAKVHIHRSWFFFPFHRWYIYFFERILGSLPFWWDPYFAIEAPHNTVHKWVQEDMGYTAARDPVFYPHHTNWGIWKKDWRVYEDV Tribolium_castaneum_tyr2 MRQDTQSFPDEEATVVPAYFREDLHWHNRRGELFYYMHQQIIARYNFELKRARFNFNAYFPYGDLHNMGHVFIFGVMGATAMRDPIFYRWHSYFQEYKAGSPKITVN Tribolium_castaneum_tyr3 MRQDTQSFPDEEATVVPAYFREDLHWHNRRGELFYYMHQQIIARYNFELKRARFNFNAYFPYGDLHNMGHVFIFGVMGATAMRDPIFYRWHSYFQEYKAGSPKITVN Tribolium_castaneum_tyr1 MRPDTQVFPDEEAHIVPAYWREDIHWHNRRGEIFYYMHQQIIARFNIELKRVKLSWRAYFPYGDFHNMGHILIFGVMAAVDLRDPLFFRWHAYFQEFKAGSDKITVN Drosophila_melanogaster_tyr2 MRPDTQTFPDEESFVVQWYFREDLHWHDRRGELFYYMHQQVIARYNAELARVPFNLRGYFPYGDLHNNGHTFIFGVMGSTAMRDPVFYKWHSYFQEHKSGNPTISLN Anopheles_gambiae_tyr1 MRKDTHVFPDEEATVVPWYFREDIHWHDRRGELFYYMHQQLVARYNFELQRVRLNLRGYFPYGDMHNMGHVFIFGVMGATAMRDPVFYRWHSYFQEHKNGNPTIMIE Drosophila_melanogaster_tyr1 MRPDTKTFPDEESFVVEWYFREDLHWHDRRGELFYYMHQQIIARYNAEMARVPFNLDGYFPYGDFHNMGHILIAGVMGSTAMRDPIFYKWHAFFQEHKRGHETIKVE Bombyx_mori_tyr1 MRPDTKSFPDEVSSVVPAYFREDIHWHDRRGELFYYMHQQIIARYNVELSRVRYNFRGYFPYGDLHNMGHVFIFGVMGATAMRDPVFYRWHAYFHLYKYGSEVIEVN Bombyx_mori_tyr2 MRRDTRVFPSETAAVIPAYWREDIHYHDRRGELFFYMHQQVIARFNCELKRVKFSWRAYFPYGSIHNNGHSFTFGVIAATTMRDPFFYRWHAYFQKHKEGPHRINVN Drosophila_melanogaster_tyr3 MRPDTRIFPSQEASVIGAYFREDIHWHDRRGELFYYMHHQILARYNVELKKVPLNLRGYFPYGNLHNEGHNIIFGVMGTTAMRDPIFYRWHGFFNKFKTRNPTFNVT Anopheles_gambiae_tyr8 MRPDTKLFPDEEGSIVLAFFREDIHWHDRRGELFYYMHQQLLARYQIDLGRIPLALRAYYPYGDVHNMGHVLLSGVMGATAMRDPIFYRWHKFFLRNKAGSPRLRIN Anopheles_gambiae_tyr7 MRSDTSLFPDEEGRAVLAYFREDIHWHDRRGELFYYMHQQMIARYQVELGRVPLDLRPYYPYGDTHNSGHVLLFGVMGTTAMRDPVFYRWHTFFQRHKQGSARLQV- Anopheles_gambiae_tyr5 MRDDTRLFPDEESNLLDAYWREDIHWHDRRGELFYHMHQQTIARYNIELARTSFSLRAYFPYGDYHQNGHVMLVGVMGTTTMRDPLFYRWHQHFVRHKQGNPRIQAT Anopheles_gambiae_tyr4 MRTDTRLFPDEEGTLVDAYWREDIHWHDRRGELFYYMHQQTMARYNIEMPRVAFRFRAYFPYGDLHNNGHNILFGVVGTTAMRDPVFYRWHQHFVRHKQGNPRIRVN Anopheles_gambiae_tyr6 MRPDTKLFPDEEGAVVNAYFREDIHWHDRRGELFYYMHQQLIARYNVDLSRVPLTLRGYFPYGNYHGHMHNLIYGVVGQTAMRDPAFYRLHAQFHRYKRGNPRFAVN Anopheles_gambiae_tyr3 MRPDTKLFPDEEGAIVQAYFREDIHWHDRRGELFYYMHQQLIARYNVELARVPLTLRGYFPYGNYHGNLHNIIYGVVGQTAMRDPSFYRLHAQFHRYKRGNPRLTVN Anopheles_gambiae_tyr2 MREDTKLFPDEEGAAVQAYFREDIHWHDRRGELFFYMHSQLIARYNADLKKVNLTYRGYYPYGSLHNMGHNVIYGVMGTTAMRDPIFYRWHGMFRRHKEGNPRVEVN Anopheles_gambiae_tyr9 MRKDTGMFPTEEGFVVQAYFREDIHWHDRRGELFYYMHRQTVARYNVELPAVPLKLRAYFPYGNYHSLGHVLIHGVMGTTAMRDPTFYRFHGHFDMHKQGNPQIMVQ Daphnia_pulex_tyr MRQDSRIFPGEAQTTVQSYFREDLHWHDRRGELFYYMHQQILARYDAELARVSYHWDAYFPYGDLHNFGHIAMMGVMGVTAMRDPIFYRWHKFFQQFKATPDRIQVT Epiperipatus_sp_Hc MSPHTTTMPYGIIESTKSYFREDIHWHNRKGELFYYMHEQMLARYDAEMRRVSLHYDGYYPYGDLHNTGHVMLDGVMGQTALRDPLFYRWHKHLQNHKRQSENIKVN Euphrynichus_bacillifer_HcB MRDDCKIFPDKEATLKPAYYREDIHWHDRKGELFFYMHQQMCARYDCEMNRMPFHFEGYAPYGSLHNWGHVMMPGVMSSTALRDPIFYRWHRFFQDYKAHKPSITVN Mastigoproctus_giganteus_HcB MRDDCKIFPDKEVYRNPAYYREDIHWHDRKGELFYYMHQQMCARYDCEMNRMPFHFEGYAPYGSLHNWGHVMMPGVMSSTSLRDPIFYRWHRFFKDYKSHSPSIDVQ Euphrynichus_bacillifer_HcA MRDDCRVFPDKADLKRTAYFREDIHWHDRKGELFYYMHQQMCARYDCELRRMPFHFHGYAPYGSLHNWGHVILPGVMSSTALRDPIFYRYHRFFQEYKIGSPSIGVE Mastigoproctus_giganteus_HcA MRSDCDIFPDKADINRTAYFREDIHWHDRKGELFYYMHQQMCARYDCDLRRLPFHFHGYNPYGSLHNWGHVIIPGVMSSTSLRDPIFYRYHRFFQELKAGSPNISVE Limulus_polyphemus_HcA MRDDCKIFPDKDDHHRKAYFREDIHWHDRKGELFYYMHQQMCARYDCDLQRMPFQFEGYSAYGSLHNWGHVMLPGVMSSTSLRDPIFYRYHRFFQEYKAGSAEIQVE Limulus_polyphemus_HcB MRPDCKIFPDKEFWQNPAYYREDIHWHDRKGELFYYMHQQMCARYDCEMPRMPFHFHGYSSYGSIHNWGHVISPGVMSATSLRDPIFYRWHRFFQDYKEGADKIQVE Aspergillus_nidulans_tyr2 MSKDAQFFSTCTADTLHSYWRDDYHYYDRHGEVFLYVHSQMVARYETELPLVPWNYDGYAPYGNLHNYGLGKFYGLTIFGAPRDPCFWRWYKHLQYYGRGPPNVQVK Aspergillus_nidulans_tyr1 MSKDAQFFSTCTADTLHSYWRDDYHYYDRHGEVFLYVHSQMVARYETELPLVPWNYDGYAPYGNLHNYGLGKFYGLTIFGAPRDPCFWRWYKHLQYYGRGPPNVQVK Amphimedon_queenslandica_tyr MSKEAQEFAMEVTPTIPSYWREDYHYHDRQGELFLYMHSQMLARYNAEDIGLDPWYDSYTPYGTLHNLGHDKFWGVMGSVAVRDPVFWIWHRHRQSIVKDTPVVKVE Saccoglossus_kowaleksii_Hc MHSLARKVPEMSTHAMVDYWRHDAHRHDRQGELFVYMHRQMLARYNAELEPVPWEFTGSDAYGSLHNSGHGVFSTYMAAHAVRDHIFFRWHKFVEEYHQDLAHLRIR Ciona_intestinalis_tyr1 MSKRAKQYPVISNAAMTNYWRNDAHRHFRQGELFGYMHAQMLARYNAELPVVAWQYNGYNTLGSIHNNGHGVISSYMSVTAMRDPIFYRWHKRWQEWSSGPPHIRFQ Ciona_intestinalis_tyr4 MSKLCKKHNVTQSAAMTNYWRCDAHNHTRQGELFGYMHAQMLARFNADLEPVAYEDEGFDAFGGFHNMGHMAFTTYMGLCAVRDPIFFRWHQHYQMWNDREPHIRLK Ciona_intestinalis_tyr3 MSKLCKKHNVTQSAAMTNYWRCDAHNHTRQGELFGYMHAQMLARFNADLEPVAYEDEGFDAFGGFHNMGHMAFTTYMGLCAVRDPIFFRWHQHYQMWNDREPHIRLK Ciona_intestinalis_tyr2 MSKLCKKHNVTQSAAMTNYWRCDAHNHTRQGELFGYMHAQMLARFNADLEPVAYEDEGFDAFGSFHNMGHMAFTTYMGLCAVRDPIFFRWHQHYQMWNDREPHIRLK ; END; BEGIN TREES; Title Type_3_coppper_proteins_Bayesian_Inference_tree; LINK Taxa = Taxa; TRANSLATE 1 Suberites_domuncula_tyr, 2 Saccoglossus_kowalevskii_tyrd, 3 Saccoglossus_kowalevskii_tyrc, 4 Saccoglossus_kowalevskii_tyrb, 5 Saccoglossus_kowalevskii_tyra, 6 Branchiostoma_floridae_tyrh, 7 Branchiostoma_floridae_tyre, 8 Branchiostoma_floridae_tyrf, 9 Branchiostoma_floridae_tyrg, 10 Branchiostoma_floridae_tyrd, 11 Branchiostoma_floridae_tyrc, 12 Branchiostoma_floridae_tyra, 13 Branchiostoma_floridae_tyrb, 14 Branchiostoma_floridae_tyri, 15 Branchiostoma_floridae_tyrl, 16 Branchiostoma_floridae_tyrk, 17 Branchiostoma_floridae_tyrj, 18 Branchiostoma_floridae_tyrm, 19 Capitella_teleta_tyr1, 20 Mus_musculus_Tyr, 21 Homo_sapiens_TYR, 22 Branchiostoma_floridae_tyrA1, 23 Branchiostoma_floridae_tyrC1, 24 Branchiostoma_floridae_tyrB1, 25 Ciona_intestinalis_tyr, 26 Mus_musculus_Tyrp1, 27 Homo_sapiens_TYRP1, 28 'Ciona intestinalis tyr1/2b', 29 'Ciona intestinalis tyr1/2a', 30 'Branchiostoma floridae tyr1/2b', 31 'Branchiostoma floridae tyr1/2a', 32 Mus_musculus_Tyrp2, 33 Homo_sapiens_TYRP2a, 34 Homo_sapiens_TYRP2b, 35 Clonorhis_sinensis_tyr1, 36 Schmidtea_mediterranea_tyr, 37 Capitella_teleta_tyr2, 38 Streptomyces_tsukubaensis_tyr, 39 Streptomyces_venezuelae_tyr, 40 Bacillus_megaterium_tyr2, 41 Bacillus_megaterium_tyr1, 42 Nitrosomonas_europeae_tyr, 43 Clonorchis_sinensis_tyr5, 44 Clonorchis_sinensis_tyr4, 45 Clonorchis_sinensis_tyr3, 46 Schistosoma_japonicum_tyr, 47 Schistosoma_mansoni_tyr4, 48 Schistosoma_mansoni_tyr1, 49 Schistosoma_mansoni_tyr3, 50 Schistosoma_mansoni_tyr2, 51 Clonorchis_sinensis_tyr2, 52 Dictyostelium_discoideum_tyr2, 53 Dictyostelium_discoideum_tyr1, 54 Candidatus_nitrosopumilus_tyr, 55 Neurospora_crassa_tyr3, 56 Neurospora_tetrasperma_tyr3, 57 Neurospora_crassa_tyr2, 58 Neurospora_tetrasperma_tyr2, 59 Neurospora_crassa_tyr1, 60 Neurospora_tetrasperma_tyr1, 61 Polysphondylium_pallidum_tyr1, 62 Nematostella_vectensis_tyr4, 63 Nematostella_vectensis_tyr3, 64 Nematostella_vectensis_tyr1, 65 Nematostella_vectensis_tyr2, 66 Hydra_magnipapillata_tyr, 67 Phragmatopoma_californica_tyr, 68 Brugia_malayi_TYR2, 69 Brugia_malayi_TYR4, 70 Caenorhabditis_briggsae_TYR2, 71 Caenorhabditis_remanei_TYR2, 72 Caenorhabditis_elegans_TYR2, 73 Caenorhabditis_briggsae_TYR5, 74 Caenorhabditis_briggsae_TYR1, 75 Caenorhabditis_elegans_TYR1, 76 Caenorhabditis_remanei_TYR1, 77 Brugia_malayi_TYR3, 78 Brugia_malayi_TYR1, 79 Caenorhabditis_briggsae_TYR3, 80 Caenorhabditis_elegans_TYR3, 81 Caenorhabditis_remanei_TYR3, 82 Caenorhabditis_briggsae_TYR4, 83 Caenorhabditis_remanei_TYR4, 84 Caenorhabditis_elegans_TYR4, 85 Pinctada_fucata_tyr2, 86 Pinctada_fucata_tyr3, 87 Pinctada_fucata_tyr4, 88 Pinctada_fucata_tyr1, 89 Lottia_gigantea_tyr2, 90 Caenorhabditis_briggsae_TYR6, 91 Caenorhabditis_elegans_TYR5, 92 Caenorhabditis_remanei_TYR5, 93 Lottia_gigantea_tyr1, 94 Illex_argentinus_tyr1, 95 Illex_argentinus_tyr2, 96 Sepia_officinalis_tyr, 97 Sepia_officinalis_Hc, 98 Megathura_crenulata_Hc, 99 Nucula_nucleus_Hc, 100 Aplysia_californica_Hc, 101 Ciona_intestinalis_HcF, 102 Ciona_intestinalis_HcE, 103 Ciona_intestinalis_HcG, 104 Ciona_intestinalis_HcH, 105 Ciona_intestinalis_HcI, 106 Ciona_intestinalis_HcD, 107 Ciona_intestinalis_HcC, 108 Ciona_intestinalis_HcB, 109 Ciona_intestinalis_HcA, 110 Aspergillus_aculeatus_tyr, 111 Agaricus_bisporus_tyr, 112 Ectocarpus_siliculosus_tyr12, 113 Ectocarpus_siliculosus_tyr13, 114 Ectocarpus_siliculosus_tyr16, 115 Ectocarpus_siliculosus_tyr18, 116 Ectocarpus_siliculosus_tyr17, 117 Ectocarpus_siliculosus_tyr14, 118 Ectocarpus_siliculosus_tyr15, 119 Ectocarpus_siliculosus_tyr7, 120 Ectocarpus_siliculosus_tyr11, 121 Ectocarpus_siliculosus_tyr10, 122 Ectocarpus_siliculosus_tyr8, 123 Ectocarpus_siliculosus_tyr9, 124 Ectocarpus_siliculosus_tyr4, 125 Ectocarpus_siliculosus_tyr3, 126 Ectocarpus_siliculosus_tyr2, 127 Ectocarpus_siliculosus_tyr1, 128 Ectocarpus_siliculosus_tyr6, 129 Ectocarpus_siliculosus_tyr5, 130 Dictyostelium_fasciculatum_tyr, 131 Polysphondylium_pallidum_tyr2, 132 Lottia_gigantea_Hc, 133 Vitis_vinifera_CO, 134 Oryza_sativa_CO, 135 Glycine_max_CO12, 136 Glycine_max_CO11, 137 Glycine_max_CO9, 138 Glycine_max_CO8, 139 Glycine_max_CO10, 140 Glycine_max_CO7, 141 Glycine_max_CO6, 142 Glycine_max_CO2, 143 Glycine_max_CO1, 144 Glycine_max_CO5, 145 Glycine_max_CO4, 146 Glycine_max_CO3, 147 Tribolium_castaneum_tyr2, 148 Tribolium_castaneum_tyr3, 149 Tribolium_castaneum_tyr1, 150 Drosophila_melanogaster_tyr2, 151 Anopheles_gambiae_tyr1, 152 Drosophila_melanogaster_tyr1, 153 Bombyx_mori_tyr1, 154 Bombyx_mori_tyr2, 155 Drosophila_melanogaster_tyr3, 156 Anopheles_gambiae_tyr8, 157 Anopheles_gambiae_tyr7, 158 Anopheles_gambiae_tyr5, 159 Anopheles_gambiae_tyr4, 160 Anopheles_gambiae_tyr6, 161 Anopheles_gambiae_tyr3, 162 Anopheles_gambiae_tyr2, 163 Anopheles_gambiae_tyr9, 164 Daphnia_pulex_tyr, 165 Epiperipatus_sp_Hc, 166 Euphrynichus_bacillifer_HcB, 167 Mastigoproctus_giganteus_HcB, 168 Euphrynichus_bacillifer_HcA, 169 Mastigoproctus_giganteus_HcA, 170 Limulus_polyphemus_HcA, 171 Limulus_polyphemus_HcB, 172 Aspergillus_nidulans_tyr2, 173 Aspergillus_nidulans_tyr1, 174 Amphimedon_queenslandica_tyr, 175 Saccoglossus_kowaleksii_Hc, 176 Ciona_intestinalis_tyr1, 177 Ciona_intestinalis_tyr4, 178 Ciona_intestinalis_tyr3, 179 Ciona_intestinalis_tyr2; TREE con_50_majrule = ((164:0.1288545114755136,(((171:0.142595503874189,(166:0.04613962641931337,167:0.0305410155314052):0.03406869659269207):0.05971286374628135,(170:0.08846644732852157,(168:0.04386526037121485,169:0.07272144259277623):0.04323712078722491):0.04894515553911753):0.2010632054341468,(165:0.3121279589554996,((130:0.07431376891892874,131:0.06519734104113488):0.5332353219394862,((174:0.3876723496801143,(172:0.005648628323581567,173:0.005784261214040891):0.4106727687311212):0.107817866027789,(175:0.2704582811136479,(176:0.2115300613646117,(179:0.00778669844717432,(177:0.005466877996649084,178:0.005555059197239312):0.011624132145193):0.317820513370673):0.0968718930522924):0.286258370998696):0.1276497723476515):0.1946388992129269):0.09755570774406536,(151:0.07687530968386282,(150:0.03416154424757513,152:0.1151544422204345):0.07463394120378634,(153:0.1066181226819368,((147:0.005218405198000013,148:0.005026724165751906):0.04973420495625117,(149:0.1146936367867871,154:0.2181996351185628):0.08914026399889687):0.03042534368963365):0.03563681262894203,(155:0.1693783887322126,(162:0.1455986283295219,(156:0.1183218133265564,157:0.0900707856250789):0.09448918436056838,((160:0.06388233341079401,161:0.01624137175619059):0.1396631697318192,(163:0.1831621240264116,(158:0.1197418741471989,159:0.07004258222730228):0.1116935581269812):0.0430839474576662):0.04696362742436399):0.05270181032309841):0.07534346349670853):0.1379835398020012):0.09484793230033725):0.6216262447217495,(42:0.345737707466144,54:0.3179704971175079,61:0.4335350782137504,(38:0.1698208833141525,39:0.1267497896405764):0.1480836143353777,(40:0.004857162178459031,41:0.005042776877418256):0.1655091028542039,(52:0.005392934955116912,53:0.01104031663139138):0.4248532142311791,((65:0.4994569094044183,66:0.3672861426361975):0.1744097641406074,(64:0.4306350594979552,(62:0.1775885857083521,63:0.2637336357712817):0.1284857226642462):0.09373229401925832):0.3197564590089794,((142:0.01792876024893831,143:0.01402763291753955):0.07060834507185396,(144:0.1178114488088248,((140:0.03153182916106138,141:0.02553259037587556):0.1678774451337599,(145:0.06017325510912509,146:0.05976729181885834):0.1712388445320644,((138:0.06841949533847154,(133:0.2228391161109384,134:0.1587387267692445):0.07630422801995876):0.04618346221178651,(137:0.0346944727113127,(139:0.1295564109474815,(135:0.0381559261654209,136:0.005251177134443101):0.01261197083645548):0.03398120650947125):0.0668509269545359):0.05183522504180347):0.09695034568041938):0.1051401226772276):0.5877828933749323,(((59:0.01427527744955967,60:0.01449498207509175):0.3152110173462328,((110:0.3511249719228143,111:0.3257349511689658):0.1268971111415,((55:0.005969102487065689,56:0.009811853024072859):0.2453317324071459,(57:0.008878975365994812,58:0.07018330384468542):0.1893114039245441):0.1620723426858937):0.1252026673910712):0.234051976854262,(132:0.4336526743650682,((97:0.1443481281290868,98:0.1118559285157624,(99:0.1278770489479572,100:0.1544575644022878):0.06865929109237694):0.1938124590491188,((109:0.109341639571833,(106:0.03515089086998135,(107:0.06569600746716875,108:0.03187044759016609):0.05377366192942842):0.09893045250385121):0.2280100641423011,(103:0.124646664597899,(101:0.0731161388357333,102:0.02981747243508811):0.07651125273287018,(104:0.05679883335885364,105:0.09558360382304648):0.08262861104502714):0.1302821547250018):0.4767487546277073):0.2052452669858036):0.1419907429807489):0.2200730218282322,(1:0.3999251679426366,(19:0.2346634643154721,37:0.2785681855956391,(35:0.1438795428913085,36:0.300571226850569):0.09991866622216605,((50:0.1816110887202362,51:0.2300608513961993):0.2600565071775445,((45:0.2139121491401176,(43:0.03972323906075448,44:0.07277461975374827):0.1334388697612175):0.08985100814337382,(46:0.09644475928317474,(47:0.005199597941965918,48:0.004966466967060104,49:0.04359796250881283):0.08263551396574599):0.1869704221818381):0.1343648322571444):0.3395869365104531,(((25:0.2125474496967358,((20:0.03057431848659731,21:0.03953417281903033):0.1777818765564667,(22:0.09781923020350523,(23:0.005061679092743087,24:0.005089091652039083):0.1394440905526045):0.0947785940182555):0.04554371154963929):0.08913548877447,((30:0.006987535595278277,31:0.0400928640280265):0.09535999283540152,((26:0.02256095912307524,27:0.02513244780339155):0.1234723249997975,((28:0.03695026071080089,29:0.04509452461925339):0.08621520949357517,(32:0.03116912372602928,(33:0.004968483030940474,34:0.004738763689190672):0.02294109671265421):0.1376998954840027):0.0636109897304322):0.09980223924711006):0.2014906683520844):0.08017773847012014,(((2:0.05564295338423422,3:0.1047705236676699):0.1032627821975015,(4:0.01540342684928345,5:0.03846748118410426):0.2664421013664509):0.08302616794598199,((16:0.008295173498361702,17:0.016932682312681):0.1482855477159657,(18:0.3996973960542069,(15:0.0945767964352495,((12:0.007357288377410159,13:0.02370684878175831):0.1000467778781908,(14:0.0616559419580768,((7:0.01912455535438414,(6:0.02858982934952231,9:0.1171741207083508):0.02325583026639783):0.0346736814987556,(8:0.0353962216400924,(10:0.01213739705054453,11:0.01185837339046604):0.1132252715450267):0.0447395564416946):0.04430976068265757):0.04026298709434271):0.04422600827449072):0.06449188396003543):0.05276794707752704):0.07466396957271063):0.07661835341427092):0.0777383869283336):0.1664510202116153):0.1456626584100309,((92:0.4068645185048128,((78:0.1149325799904079,(90:0.0203372145982671,91:0.02035108052409324):0.4606667209742214,((80:0.01866058409545671,(79:0.005252781337657029,81:0.0278540770077268):0.02208361875581352):0.1564863669516663,(82:0.005251543773222668,(83:0.005045323830441579,84:0.01211876754744254):0.01856157385592753):0.06772285545496787):0.09389734137683445):0.03692606615652075,(68:0.2341995986896001,((69:0.1240365655174207,(70:0.01816280803795245,(71:0.004984065631157539,72:0.005144178499573145):0.01596804274128015):0.06139363007549337):0.05651148046159313,(77:0.1733006173782968,(75:0.01036439638271924,(76:0.006425776834474314,(73:0.005086093081282129,74:0.005003193239532141):0.0253060513373238):0.01730612266889304):0.09998090704831139):0.08138501784512699):0.06484695956306379):0.04577222595076331):0.1204049742882895):0.1331642249754307,(93:0.3105051982731179,(96:0.04850872892912204,(94:0.005211386378582974,95:0.005089038709861891):0.02001957120419336):0.5309406833457098,(67:0.3422249059486752,((88:0.3125941345882431,89:0.5098027990970074):0.08250051780857046,(87:0.1585660140985081,(85:0.008198665745841542,86:0.01689071346784858):0.1237817338345551):0.2192786484746161):0.05913890685612752):0.0757465534049142,((119:0.1854758209877657,(121:0.06555934936802198,(120:0.03031981251869098,(122:0.1374346761993582,123:0.0638611142394983):0.04758385933799805):0.04726272896443345):0.1464391384767912):0.3078802756334314,((128:0.1690852561044864,129:0.2156326767954436):0.2117500029999492,(124:0.1779742128977366,(127:0.1262506305612828,(125:0.06897912704364668,126:0.03165302855210885):0.09680141505606285):0.1202424838172275):0.07885931660717087):0.3226030957595059,((112:0.08739289625287881,113:0.01849080586761154):0.3091339269784331,(117:0.05333858701752889,(118:0.1287188204419369,(115:0.06778756509197367,(114:0.04738974766161416,116:0.07980136034565237):0.05172525835519969):0.07361249421557568):0.1027686175171643):0.2174596367192006):0.1926656448907053):0.5747650256466976):0.1068379919650788):0.1354759714137417):0.6216262447217495); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 107; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 107; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 107; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1362361907169; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 4512946878802728459; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 3366967356927268566; mqVersion 275; checksumv 0 3 3014996149 null getNumChars 107 numChars 107 getNumTaxa 179 numTaxa 179 short false bits 1048575 states 1048575 sumSquaresStatesOnly 3.90333158973926E14 sumSquares 3.90333158973926E14 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1280 966; setLocation -1280 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #4512946878802728459 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #4512946878802728459; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1180 899; setLocation -1280 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #4512946878802728459 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 8850.1362361896464.4207631597807374494; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1180 899; setLocation -1280 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #3366967356927268566 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 160; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1180 899; setLocation -1280 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;