#NEXUS [ ============= Summary Trees ============= Summary trees generated by SumTrees. Summarization Information ------------------------- Trees read from 100 source(s): - 'BS/garli_6.run1.boot.tre' - 'BS/garli_6.run10.boot.tre' - 'BS/garli_6.run100.boot.tre' - 'BS/garli_6.run11.boot.tre' - 'BS/garli_6.run12.boot.tre' - 'BS/garli_6.run13.boot.tre' - 'BS/garli_6.run14.boot.tre' - 'BS/garli_6.run15.boot.tre' - 'BS/garli_6.run16.boot.tre' - 'BS/garli_6.run17.boot.tre' - 'BS/garli_6.run18.boot.tre' - 'BS/garli_6.run19.boot.tre' - 'BS/garli_6.run2.boot.tre' - 'BS/garli_6.run20.boot.tre' - 'BS/garli_6.run21.boot.tre' - 'BS/garli_6.run22.boot.tre' - 'BS/garli_6.run23.boot.tre' - 'BS/garli_6.run24.boot.tre' - 'BS/garli_6.run25.boot.tre' - 'BS/garli_6.run26.boot.tre' - 'BS/garli_6.run27.boot.tre' - 'BS/garli_6.run28.boot.tre' - 'BS/garli_6.run29.boot.tre' - 'BS/garli_6.run3.boot.tre' - 'BS/garli_6.run30.boot.tre' - 'BS/garli_6.run31.boot.tre' - 'BS/garli_6.run32.boot.tre' - 'BS/garli_6.run33.boot.tre' - 'BS/garli_6.run34.boot.tre' - 'BS/garli_6.run35.boot.tre' - 'BS/garli_6.run36.boot.tre' - 'BS/garli_6.run37.boot.tre' - 'BS/garli_6.run38.boot.tre' - 'BS/garli_6.run39.boot.tre' - 'BS/garli_6.run4.boot.tre' - 'BS/garli_6.run40.boot.tre' - 'BS/garli_6.run41.boot.tre' - 'BS/garli_6.run42.boot.tre' - 'BS/garli_6.run43.boot.tre' - 'BS/garli_6.run44.boot.tre' - 'BS/garli_6.run45.boot.tre' - 'BS/garli_6.run46.boot.tre' - 'BS/garli_6.run47.boot.tre' - 'BS/garli_6.run48.boot.tre' - 'BS/garli_6.run49.boot.tre' - 'BS/garli_6.run5.boot.tre' - 'BS/garli_6.run50.boot.tre' - 'BS/garli_6.run51.boot.tre' - 'BS/garli_6.run52.boot.tre' - 'BS/garli_6.run53.boot.tre' - 'BS/garli_6.run54.boot.tre' - 'BS/garli_6.run55.boot.tre' - 'BS/garli_6.run56.boot.tre' - 'BS/garli_6.run57.boot.tre' - 'BS/garli_6.run58.boot.tre' - 'BS/garli_6.run59.boot.tre' - 'BS/garli_6.run6.boot.tre' - 'BS/garli_6.run60.boot.tre' - 'BS/garli_6.run61.boot.tre' - 'BS/garli_6.run62.boot.tre' - 'BS/garli_6.run63.boot.tre' - 'BS/garli_6.run64.boot.tre' - 'BS/garli_6.run65.boot.tre' - 'BS/garli_6.run66.boot.tre' - 'BS/garli_6.run67.boot.tre' - 'BS/garli_6.run68.boot.tre' - 'BS/garli_6.run69.boot.tre' - 'BS/garli_6.run7.boot.tre' - 'BS/garli_6.run70.boot.tre' - 'BS/garli_6.run71.boot.tre' - 'BS/garli_6.run72.boot.tre' - 'BS/garli_6.run73.boot.tre' - 'BS/garli_6.run74.boot.tre' - 'BS/garli_6.run75.boot.tre' - 'BS/garli_6.run76.boot.tre' - 'BS/garli_6.run77.boot.tre' - 'BS/garli_6.run78.boot.tre' - 'BS/garli_6.run79.boot.tre' - 'BS/garli_6.run8.boot.tre' - 'BS/garli_6.run80.boot.tre' - 'BS/garli_6.run81.boot.tre' - 'BS/garli_6.run82.boot.tre' - 'BS/garli_6.run83.boot.tre' - 'BS/garli_6.run84.boot.tre' - 'BS/garli_6.run85.boot.tre' - 'BS/garli_6.run86.boot.tre' - 'BS/garli_6.run87.boot.tre' - 'BS/garli_6.run88.boot.tre' - 'BS/garli_6.run89.boot.tre' - 'BS/garli_6.run9.boot.tre' - 'BS/garli_6.run90.boot.tre' - 'BS/garli_6.run91.boot.tre' - 'BS/garli_6.run92.boot.tre' - 'BS/garli_6.run93.boot.tre' - 'BS/garli_6.run94.boot.tre' - 'BS/garli_6.run95.boot.tre' - 'BS/garli_6.run96.boot.tre' - 'BS/garli_6.run97.boot.tre' - 'BS/garli_6.run98.boot.tre' - 'BS/garli_6.run99.boot.tre' Total of 100 trees analyzed for summarization: - All trees were treated as unweighted - All trees were unrooted - 36 unique taxa across all trees - 127 unique splits out of a total of 6996 splits - 90 unique non-trivial splits counted out of a total of non-trivial 3296 splits Summarizing onto target tree defined in 'garli_6.run2.best.tre': - Support values expressed as proportions or probabilities - Edge lengths as given on target trees - Support and other summarization annotations added to target trees as metadata Program Information ------------------- SumTrees 4.0.0 (Jan 31 2015) by Jeet Sukumaran and Mark T. Holder Using None, located at: '/Library/Python/2.7/site-packages/dendropy' Running under Python 2.7.10 (default, Aug 22 2015, 20:33:39) (GCC 4.2.1 Compatible Apple LLVM 7.0.0 (clang-700.0.59.1)), located at: '/usr/bin/python' Execution Information --------------------- Executed on Noors-MBP.us.sinet.si.edu by NDW@Noors-MBP.us.sinet.si.edu Working directory: '/Users/NDW/Documents/Research/4Gene/Manuscript/FINAL_RESULTS/Partition_Finder_NumberParams/6_NucMitoUTR/GARLI' Started at: 2015-11-16 10:46:40.044647 Ended at: 2015-11-16 10:46:41.378710 Total elapsed time: 1.334063 seconds Actual analysis time: 1.239026 seconds Citation Information -------------------- Sukumaran, J and MT Holder. 2010. DendroPy: a Python library for phylogenetic computing. Bioinformatics 26: 1569-1571. Sukumaran, J and MT Holder. SumTrees: Phylogenetic Tree Summarization. 4.0.0 (Jan 31 2015). Available at https://github.com/jeetsukumaran/DendroPy. ] BEGIN TAXA; DIMENSIONS NTAX=36; TAXLABELS Aegotheles_insignis Batrachostomus_septimus Caprimulgus_manillensis Caprimulgus_a_affinis Hydropsalis_anthonyi Antrostomus_carolinensis Gactornis_enarratus Caprimulgus_e_europaeus Caprimulgus_macrurus Hydropsalis_maculicaudus Hydropsalis_nigrescens Hydropsalis_parvulus1 Hydropsalis_parvulus2 Antrostomus_ridgwayi Antrostomus_v_vociferus Hydropsalis_whitelyi Chordeiles_acutipennis Chordeiles_pusillus Hydropsalis_anomalus Eurostopodus_argus Lyncornis_m_macrotis Hydropsalis_climacocerca Hydropsalis_rufiventris Caprimulgus_vexillarius Nyctibius_grandis Hydropsalis_albicollis Nyctiphrynus_ocellatus Hydropsalis_leucopyga Nyctiphrynus_mcleodii Antrostomus_nuttallii Chordeiles_nacunda Podargus_strigoides Caprimulgus_climacurus Siphonorhis_brewsteri Steatornis_caripensis Hydropsalis_segmentata ; END; BEGIN TREES; TREE 6_PartFinder = [&U] [!GarliScore -36520.870050][!GarliModel S 0.288894 0.076959 0.494469 12.787854 0.509560 0.099136 M1 r 1.84801 6.94013 0.52869 1.37816 12.73293 1.00000 e 0.29060 0.22998 0.26831 0.21110 a 0.78529 p 0.41188 M2 r 1.91203 6.83502 0.51247 2.31836 6.83502 1.00000 e 0.34933 0.19716 0.21696 0.23655 a 0.75559 p 0.72831 M3 r 2.44893 20.52568 2.78690 1.05139 20.52568 1.00000 e 0.24105 0.31174 0.16442 0.28279 a 0.27938 p 0.49336 M4 r 1.00000 268.78414 18.82254 18.82254 292.00799 1.00000 e 0.36063 0.46757 0.02890 0.14291 a 1.76895 p 0.00740 M5 r 0.94200 4.16951 0.54449 0.98231 4.16951 1.00000 e 0.25000 0.25000 0.25000 0.25000 a 0.96682 M6 r 1.00000 3.53969 0.41883 0.41883 2.05316 1.00000 e 0.31547 0.19248 0.17397 0.31807 a 0.75311 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