#NEXUS BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=17; TAXLABELS Commiphora_lasiodisca_10I1112 Commiphora_lasiodisca_59 Commiphora_lasiodisca_84 Commiphora_ankaranensis_10I1102 Commiphora_arafy_10II1301 Commiphora_barorum_141 Commiphora_franciscana_10I2210 Commiphora_humbertii_10I2008 Commiphora_cf_humbertii_136 Commiphora_laxecymigera_115 Commiphora_mafaidoha_10II1302 Commiphora_mahafaliensis_10I2202 Commiphora_monstruosa_10I2109 Commiphora_onilahiensis_10I2804 Commiphora_orbicularis_111 Commiphora_orbicularis_tul_10I2304 Commiphora_sinuata_10I2306 ; END; BEGIN CHARACTERS; TITLE Com_ITS_Arafy_Alignment; DIMENSIONS NCHAR=486; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Commiphora_lasiodisca_10I1112 ??????????????????????????????????ctgcgg-aggatcattgtcgaaacctgc----ccagcagaacgacccgcgaacatgtgatgtaa----aacaccgggcggggctgcgcaggc-tccccgcccgc-taagtcgcgggggtcggcgatgccacgttcgcggtaggcg-cccgt-cccccgtggcacaacaacgaacccggcgcggattgcgccaaggaaaacaacaacgagag----agctcgccggatgc---cgccccggagacggtgtgcgtgcaggcggcggtgccttct----ttcattatccaaaacgactctcggcaacggatatctaggctctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcccgtgaaccatcgagtctttgaacgcaagttgcgccccaag--cctctaggccgagggcacgtctgcctgggtgtcacgc Commiphora_lasiodisca_59 ?????????????acMaRgtttccgtaggtgaacctgcggaaggatcattgtcgaaacctgc----ccagcagaacgacccgcgaacatgtgatgtaa----aacaYYgggcggggctgcgcaggc-tccccgcYYgc-taagtcgcgggggtcggcgatgccacgttcgcggtaggcg-cccgt-cccccgtggcacaacaacgaacccggcgcggattgcgccaaggaaaacaacaacgagag----agctcgccggatgc---cgccccggagacggtgtgcgtgcaggcggcggtgccttct----ttcattatccaaaacgactctcggcaacggatatctaggctctcgcatcgatgaagaWcgtagcgaaatgcgatacttggtgtgaattgcagaatcccgtgaaccatcgagtctttgaacgcaagttgcgccccaag--cctctaggccRagggcacgtc???????????????? Commiphora_lasiodisca_84 aggagaagtcgtaacaaggtttccgtaggtgaacctgcggaaggatcattgtcgaaacctgc----ccagcagaacgacccgcgaacatgtgatgtaa----aacaccgggcggggctgcgcaggc-tccccgcYcgc-taagtcgcgggggtcggcgatgccacgttcgcggtaggcg-cccgt-cccccgtggcacaacaacgaacccggcgcggattgcgccaaggaaaacaacaacgagag----agctcgccggatgc---cgccccggagacggtgtgcgtgcaggcggcggtgccttct----ttcattatccaaaacgactctcggcaacggatatctaggctctcgcatcgatgaagaWcgtagcgaaatgcgatacttggtgtgaattgcagaatcccgtgaaccatcgagtctttgaacgcaagttgcgccccaag--cctctaggccRagggcacgtct??????????????? Commiphora_ankaranensis_10I1102 ??????????????????????????????????ctgcgg-aggatcattgtcgaaacctgcccaacgagcagaacgacccgcgaacccgtRacRgaaaacaaacagcgggtggggcagcgcgagc-taccctcccgcccgcgtcgcgggggtcggaggcgtcccgtccgcgggcgtcgttccgtgcccccgcggtgcaacaacgaacccggcgcggaccgcgccaaggaagccattaacgagag----agcccgtcgagcgc---cgccccggRgacggYgcgcgtgcgatcggcggtgccttctttctttcattatacaaaacgactctcggcaacggatatctaggctctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcccgtgaaccatcgagtctttgaacgcaagttgcgccccaaagccttttaggccgagggcacgtctgcctgggtgtcacgc Commiphora_arafy_10II1301 ??????????????????????????????????ctgcgg-aggatcattgtcgaaacctgcccaacgagcagaacgacccgcgaacccgtgacagaaaacgaacaccgggaggggcagcgcgagc-aaccctcccgcccgcgtcgcgggggtcggaggcgtcccgtccgcgggcgtcgttccgtgcccccgcggtgcaacaacgaacccggcgcggacYgcgccaaggaagccatYaacgagag----agcccgtcgggcgc---cgccccggagacggtgcgcgtgcgatcggcggtgccttctttctttcattatacaaaacgactctcggcaacggatatctaggctctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcccgtgaaccatcgagtctttgaacgcaagttgcgccccaag--cctttaggccgagggcacgtctgcctgggtgtcacgc Commiphora_barorum_141 ??????????????caaggtttccgtaggtgaacctgcggaaggatcattgtcgaaacctgcccaacgagcagaacgacccgcgaatccgtgacagaaaacgaacagcgggtgggacagcgcgagc-taccctcccgMccgcgtcgcgggggtcggaggcgtYccgtctacgggcgtcattccgtgcccccacggtgcaacaacaaacccgScgcggaccgcgccaaggaagccatcaacgWgag----agcccgWcgggcgc---cgccccggagacggtgcgcgtgagatcggcggtgccttctttctttctttatacaaaacgactctcggcaacggatatctaggctctcgcatctatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcccgtgaaccatcgagtctttgaacgcaagttgcgccccaag--cctttaggccgagggcacgtctgcctg?????????? Commiphora_franciscana_10I2210 ??????????????????????????????????ctgcgg-aggatcattgtcgaaacctgcccaacaagcagaacgacccgcgaacccgtgacagaa----aacaccgggaggggcggcgcgagcgtgccctcccgcccgcgtcgcgggggtcggaggcgtcccgtccgcgggcgtcgttccgtgcccccgcggtgcaacaacgaacccggcgcggaccgcgccaaggaagccatcaacgagag----agcccgtcgagcgt---cgccccggagacggtgcgtgtgcgatcggcggtgccttctttcattcattatccaaaacgactctcggcaacggatatctaggctctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcccgtgaaccatcgagtctttgaacgcaagttgcgccccaag--cctttaggccgagggcacgtctgcctgggtgtcacgc Commiphora_humbertii_10I2008 aggagaagtcgtaacaaggtttccgtaggtgaacctgcggaaggatcattgtcgaaacctgcccaacaagcagaacgacccgcgaacccgtgacagaa----aacaccgggaggggMggcgcgagccaaccctcccgcccgcgtcgcgggggtcggaggcgtcccgtccgcgggcgtcgttccgtgcccccgcggtgcaacaacgaacccggcgcggaccgcgccaaggaagccattaacgagag----agcccgtcgagcgt---cgccccggagacggtgcgcgtgcgatcgaYggtgccttctttctttcaYgatccaaaacgactctcggcaacggatatctaggctctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcccgtgaaccatcgagtctttgaacgcaagttgcgccccaag--cctttaggccgagggcacgtctgcctgggtgtcacgc Commiphora_cf_humbertii_136 aggagaagtcgtaacaaggtttccgtaggtgaacctgcggaaggatcattgtcgaaacctgcccaacaagcagaacgacYcgcgaacccatgacagaa-----aaatcgggaggggcagcgcgagctaaccctcccgcccgtgtcgtgggggtcagaggcttcccgtccacgggcatcgtttcgtgcccccgcagtgcaacaacgaacccggcacgtagcacgccaaggaagccat-aacgagag----agcccatcgagcgt---caccccggagatggtacgcatgcgatcggcggtgccttctttctttcattatccaaaacgactctcggcaacggatatctatgccctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatctcatgaaccatcgagtctttgaacgcaagttatgccccaag--cctttaggccgagggcacgtctg?????????????? Commiphora_laxecymigera_115 ggagaaggtcataacaaggtttccataggtgaacttgcggaaggatcatttttgaaacttgc----cgagtagaatgacccataaaccgattagagaa----aacaatgggaggggtagcgcgagc-tcctcgcctgcctgcgtccggggggtcggaggcgtcccgtttacgggcgtcggcccatgcccctgtagtacaataacgaacccagcgcggaccgcaccaaggaagccgt-aacaagag----agcccgccgaacgcccacgccccggagacagtgcgcgggcgggtggtggcgccttct----ttcattatccaaaatgactctcgaaaacagatatctaggctcttgcatcgatcaagaatgtagcgaaatgtgatacttggtgtgaattttaaaatcctgtgaaccatcgagtctttgaacgcaggttgtgccttaag--cctttaggctgagggcacgtct??????????????? Commiphora_mafaidoha_10II1302 ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ggaccgcgccaaggaag?cat-aacgagag----agcccgtctK?c??---?gccMcgSagacggtgcgcgtgcgatc?gcggtgccttctttctttgattatccaaaacgactctcggcaacggatatctaggctctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcccgtgaaccatcgagtctttgaacgcaagttgcgccccaag--cctttaggccgagggc?cgtctgcctgggtgtcacgc Commiphora_mahafaliensis_10I2202 ??????????????????????????????????ctgcgg-aggatcattgtcgaaacctgcccaacaagcagaacgacccgcgaacccgtgacagaaaacgaacggcgggaggggcagcgcgagctgaccctcccgcgcgcgtcgcg?g??tcggaggcgtcccgtccgcgg?cgtcgttccgcgcccccgcg?tgcaacaacgaacccggcgcggaccgcgccaaggaagccatcaacgagag----agcccgtcgagcgc---cgccccggagacggtgcgcgtgcgatcggcggcgccttct-tctttcattatacaaaacgactctcggcaacggatatctaggctctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcccgtgaaccatcgagtctttgaacgcaagttgcgccccaag--cctttaggccgagggcacgtctgcctgggtgtcacgc Commiphora_monstruosa_10I2109 ?????????????????????????????????????????aggatcattgtcga?RcctgYYca?cgagcagaacgacccgcgaacccgtgacagaW----aacatcgggaggggcggcgcgagY-tgcactcccgcccgcgtcgMg?KggtcggaggcgtcccgtccgcgggcgtcgttccgtgcccctgcggtgcW?Yaacgaacccggcgcggaccgcgccaaggaagccatcaacgagag----agcccgtcgagcgt---cgtcccggagacggtgcgcgtgcgatcggcggtgccttctttcattcattatccaaaacgactctcggcaacggatatctaggctctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcccgtgaaccatcgagtctttgaacgcaagttgcgccccaag--cctttaggccgagggcacgtctgcctgggtgtcacgc Commiphora_onilahiensis_10I2804 ??????????????????????????????????ctgcgg-aggatcattgtcgaaacctgcccaacaagcagaacgacccgcgaacccgtgacagaaaacaaacagcgggagggacagcgcgagctggccctcccgctcgcgtcg?gggggtcggaggcgtcccgtccgcgggcgtcgttccgYgcccccgcggtgcaacaacgaacccggcgcggaccgcgccaaggaagccat-aacgagag----agcccgtcgagcgt---cgccccggagacggtgcgcgtgcgatcggcggtgccttctttctttgattatccaaaacgactctcggcaacggatatctaggctctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcccgtgaaccatcgagtctttgaacgcaagttgcgccccaag--cctttaggccgagggcacgtctgcctgggtgtcacgc Commiphora_orbicularis_111 ????????????????????????????????????aggagaagttcatt-------------------------------------ccgtgaaggat------catcgggagggcctgcgcgagc-taccgtccggcctgcgtcgcaggggtcagaggcatcccgtcagcaggcgtcgttctgtgc---------gcaacaacgaactcggcgtggaccgcaccaaggaagccattaacgagagagtgagcctgtcgagtgt---cgcccaagagacggtgggcgtgagatcggtggtgccttctttctttcattatccaaaacgactctcggcaacggatatctaggctcttgtatcgatgaagaacgtagcgaaatgcgatacttggtatgaattgcagaatcccatgaaccatcgagtctttgaacacaagttgcaccccaag--cctttaggccgagggtacgtct??????????????? Commiphora_orbicularis_tul_10I2304 ????????????????????ttccgtaggtgaacctgcggaaggatcattgtcgaaacctgcccaaccagcagaacgacccgcgaacccgtgacagaaaacgaacggcgggagggRcggcgcgagc-YRccctcccgcccgYgtcgcggggctcggaggcgtcccgtccgcgggcgtcgttccgtgcccccgcggYgcaacaacgaacccggcgcggaccgcgccaaggaagccatYaacgagag----agcccgtcgagcgt---cgccccggagacggtgcgYgtgcggtcggcggtgccttctttctttcattaYacaaaacgactctcggcaacggatatctaggctctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcccgtgaaccatcgagtctttgaacgcaagttgcgccccaag--cctttaggccgagggcacgtctgcctgggtgtcacgc Commiphora_sinuata_10I2306 ??????????????????????????????????ctgcgg-aggatcattgtcgaaacctgcccaacaagcagaacgacccgcgaacccgtgacagRa----aacaccgggaggggcggcgcgagc-caccctcccgcccgcgtcgcgggggtcggaggcgtcccgtccgcgggcgtcgttccgttcccccggggcgcaacaacgaacccggcgcggaccgcgccaaggaagccatcaacgagag----agcccgtcgggcgt---cgccccggagacggtgcgcgtgcgatcggcggtgccttctctctttcattatccacaacgactctcggcaacggatatctaggctctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcccgtgaaccatcgagtctttgaacgcaagttgcgccccaag--cctttaggccgagggcacgtctgcctgggtgtcacgc ; END; BEGIN TREES; Title Com_ITS_Arafy; LINK Taxa = Taxa; TRANSLATE [0] 1 Commiphora_lasiodisca_10I1112, [1] 2 Commiphora_lasiodisca_59, [2] 3 Commiphora_lasiodisca_84, [3] 4 Commiphora_ankaranensis_10I1102, [4] 5 Commiphora_arafy_10II1301, [5] 6 Commiphora_barorum_141, [6] 7 Commiphora_franciscana_10I2210, [7] 8 Commiphora_humbertii_10I2008, [8] 9 Commiphora_cf_humbertii_136, [9] 10 Commiphora_laxecymigera_115, [10] 11 Commiphora_mafaidoha_10II1302, [11] 12 Commiphora_mahafaliensis_10I2202, [12] 13 Commiphora_monstruosa_10I2109, [13] 14 Commiphora_onilahiensis_10I2804, [14] 15 Commiphora_orbicularis_111, [15] 16 Commiphora_orbicularis_tul_10I2304, [16] 17 Commiphora_sinuata_10I2306; TREE PAUP_1 = (10:0.096785455,((1:0.00000001,(2:0.00000001,3:0.00000001):0.00000001):0.09606079,(11:0.0143864,(15:0.126634,((17:0.01742046,(7:0.00317681,13:0.01264432):0.0066153):0.0,((8:0.00850934,9:0.06660345):0.00276386,(14:0.01421457,((12:0.01174374,16:0.00983807):0.00280748,(5:0.00697762,(4:0.0099196,6:0.02636959):0.00240722):0.004321):0.00347363):0.00463383):0.0):0.000004054064):0.0000021326135):0.02402739):0.096785455)[% ] [% ] [% setBetweenBits = selected ]; END;