#NEXUS [written Fri Nov 21 03:21:05 EST 2014 by Mesquite version 3.0 (build 644) at Mesemite.local/192.168.2.8 (William Piel)] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=33; TAXLABELS Commiphora_lasiodisca_10I1112 Commiphora_lasiodisca_59 Commiphora_lasiodisca_84 Commiphora_aprevalii_10I2004 Commiphora_aprevalii_128 Commiphora_bardotiae_10I1101 Commiphora_bardotiae_62 Commiphora_brevicalyx_brev_10I2405 Commiphora_brevicalyx_vez_10I2009 Commiphora_capuronii_10I1504 Commiphora_capuronii_4885 Commiphora_capuronii_67 Commiphora_cf_capuronii_65 Commiphora_cf_ellipticaA_46 Commiphora_cf_ellipticaBursera_51 Commiphora_elliptica_10I0901 Commiphora_elliptica_43 Commiphora_falcata_10I2603 Commiphora_fraxinifolia_5831 Commiphora_grandifolia_10I1301 Commiphora_grandifolia_53 Commiphora_granulifera_125 Commiphora_guillauminii_100 Commiphora_lamii_10I2602_ITS12 Commiphora_cf_marchandii_117 Commiphora_marchandii_10II1504 Commiphora_marchandii_143 Commiphora_morondavensis_10II1405_ITS12 Commiphora_pterocarpa_106 Commiphora_pterocarpa_10I2811 Commiphora_sahafariensis_10I1205 Commiphora_sp_G_79 Commiphora_spnov_Bursera_82 ; END; BEGIN CHARACTERS; TITLE Com_ITS_Rhynchocarpa_Alignment; DIMENSIONS NCHAR=533; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Commiphora_lasiodisca_10I1112 -----------------------------------ct-gcgg-aggatcattgtcgaaacctgccc---agcagaacgacccgcgaacat-gtgatgt------------aaaacaccg-ggcgg-----ggctg----cgc-aggctcc-ccgcccgct-----aagtcgcggg-----gg--tcggcgatgcca--------cgttcgcggtaggc-gcccgt-ccc----ccgtggcacaacaacgaa--cccggcgcggattgcgccaaggaaaacaacaacg---agagagctcgccggatgc-----cgccccggagac--ggtgtgcgtgcaggcggcgg-tgccttctttcat--tatccaaaacgactctcggcaacggatatctaggctctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcc-cgtgaaccatcgagtctttgaacgcaagttgcgccccaagcctctaggccgagggcacgtctgcctgggtgtcacgc Commiphora_lasiodisca_59 --------------acMaRgtttccgtaggtgaacct-gcggaaggatcattgtcgaaacctgccc---agcagaacgacccgcgaacat-gtgatgt------------aaaacaYYg-ggcgg-----ggctg----cgc-aggctcc-ccgcYYgct-----aagtcgcggg-----gg--tcggcgatgcca--------cgttcgcggtaggc-gcccgt-ccc----ccgtggcacaacaacgaa--cccggcgcggattgcgccaaggaaaacaacaacg---agagagctcgccggatgc-----cgccccggagac--ggtgtgcgtgcaggcggcgg-tgccttctttcat--tatccaaaacgactctcggcaacggatatctaggctctcgcatcgatgaagaWcgtagcgaaatgcgatacttggtgtgaattgcagaatcc-cgtgaaccatcgagtctttgaacgcaagttgcgccccaagcctctaggccRagggcacgtc---------------- Commiphora_lasiodisca_84 -aggagaagtcgtaacaaggtttccgtaggtgaacct-gcggaaggatcattgtcgaaacctgccc---agcagaacgacccgcgaacat-gtgatgt------------aaaacaccg-ggcgg-----ggctg----cgc-aggctcc-ccgcYcgct-----aagtcgcggg-----gg--tcggcgatgcca--------cgttcgcggtaggc-gcccgt-ccc----ccgtggcacaacaacgaa--cccggcgcggattgcgccaaggaaaacaacaacg---agagagctcgccggatgc-----cgccccggagac--ggtgtgcgtgcaggcggcgg-tgccttctttcat--tatccaaaacgactctcggcaacggatatctaggctctcgcatcgatgaagaWcgtagcgaaatgcgatacttggtgtgaattgcagaatcc-cgtgaaccatcgagtctttgaacgcaagttgcgccccaagcctctaggccRagggcacgtct--------------- Commiphora_aprevalii_10I2004 -----------------------------------ct-gcgg-aggatcattgtcgaaacctgcccgccagcagaacgacccgcgaaccc-gtcggtttgagaaaacgaacaaacgacg-ggagg-----ggtgg----cgc-gagctcc-cctcccgYcc----gcgtcgcggg-----gg--tcggaggcgtcc--------cgtccgcgggcgtcggcccgtgccc----ccgcggcgccacaacgaa--cccggcgcggaccgcgccaagg-aagccataacg---ggagagcccgtcgggcgt--ccacgccccggagac--ggtgcgcgtgcgatcggcgg-cgccttctttcattatatcMaaaacgactctcggcaacggatatctaggctctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcc-cgtgaaccatcgagtctttgaacgcaagttgcgccccaagcctttaggccgagggcacgtctgcctgggtgtcacgc Commiphora_aprevalii_128 -------------------------gtaggtgaacctagcggaaggatcattgtcgaaatctgccYgccagtagaacgatccgcgaacct-gttagtttgagaaaacgaacaaatgacg-agagg-----ggYgg----cgc-gagctcc-cctcccatcc----gcgtcgcggg-----gg--tcggaggcgtcc--------cgtccacaggcatcagcccgtgccc----cYgcggcgccacaacgaa--cccggcgcggaccatgccaagg-aagctataatg---ggagagcctgtcgagcgt--ccatgtccc?gagac--ggtgtgcgtgcaatcSacgg-??ccttctttgat--tatccaaaacgactctcggYaaYagatatctaggctctYgtatcgatgaagaacgtagcRaaatgcgatacttggtgtgaattRcagaatcc-cgtgaaccatcgagtctttgaacgcaagttgcgcccta--------------------------------------- Commiphora_bardotiae_10I1101 -----------------------------------ct-gcgg-aggatcattgtcgaaacctgcccgccagcagaacgacccgcgaaccc-gttggtttgagaaaacgaacagacgacg-ggagg-----ggtgg----cKc-gagctcc-cctcccgtcc----gcgtagcggg-----gg--tcggaggcgtcc--------cgtccgcgggcgtcggcccgtgccc----ccgcgacgccacaacgaa--cccggcgcggaccgcgccaagg-aagccataacg---ggagagcccgtcgagcgt--ccacgccccggagac--ggtgcgcgtgcgatcggcgg-cgccttcttcgatt-tatccaaaacgactctcggcaacggatatctaggctctcgYWtcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcc-cgtgaaccatcgagtctttgaacgcaagttgcgccccaagcctttaggccgagggcacgtctgcctgggtgtcacgc Commiphora_bardotiae_62 -aggagaagtcgtaacaaggtttccgtaggtgaacct-gcggaaggatcattgtcgaaaMctgcac---agcagaacgacccgcgaacac------gttacaacaccgggtgagggaca-aaggg-----tg-------cat-aagctcc-cc------------aagtcgcaagcccatgg--tcggggaccgcc--------------------ctggcgtgtttcc----Ygtccgaacaacgaccc---cccggcgcggaatgcgccaagg-aaatca-aaYY---gaattgc-------------acgcgtccc----------cccgtttgcgggcggcgRaagcgtctttcta---aaacacaaacgactctcggcaacggatatctcggctctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcc-cgtgaaccatcgagtctttgaacgcaagttgcgcccgaagccattaggtcgagggcacgtctgcctg---------- Commiphora_brevicalyx_brev_10I2405 -----------------------------------ct-gcgg-aggatcattgtcgagacctgcacgccagcagaacgacccgcgaaccc-gttagttcgagagaacgaacagacggcg-ggagg-----ggcag----cgc-gagctcc-ccKcccgccc----gcgtcgcgKg-----gg--tcggaggcgtcc--------cgtccgcgggcgtcggcccgtgccc----ccgcggcgccacaacgaa--cccggcgcggaccgcgccaagg-aagccataacg---ggagagcccgtcgagcgt--ccgcgccccggagac--ggtgcgcgtgcgaYcggcgg-cgccttcttcgat--tatccaaaacgactctcggcaacggatatctaggctctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcc-cgtgaaccatcgagtctttgaacgcaagttgcgccccaagcctttaggccgagggcacgtctgcctgggtgtcacgc Commiphora_brevicalyx_vez_10I2009 -----------------------------------ct-gcgg-aggatcattgtcgaaacctgcccgccagcagaacgacccgcgaaccc-gtcagtttgagaaaacgaacRaacgacg-ggagg-----ggcag----cgc-gagctcc-ccgcccgtcc----gcgtcgSggg-----gg--tcggaggcgtcc--------cgtccgcgggcgtcggcccgYgccc----ccgcggcgccacaacgaa--cccggcgcggaccgcgccaRg?-aagccataacg---ggagagcccgtcgagcgt--ccacgccccggagac--ggcgcgcgtgcgatcggcgg-cgccttcttcKat--catMcaRaacgactctcggcaacggatatctaggctctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaat?c-cgtgaaccatcgagtctttgaacgcaagttgcgccccaagcctttaggccgagggcMMgtctgcctgggtgtcacgc Commiphora_capuronii_10I1504 -----------------------------------ct-gcgg-aggatcattgtcgaaacctgcccgccagcagaacgacccgcgaaccc-gttRgtttgagaaaacgaacaaacgacR-ggagg-----ggtgg----cgc-gagctcc-cctcccgtcc----gcgtcgcggg-----gg--tcggaggcgtcc--------cgtccgcgggcgtcggcccgtgccc----cctcggcatcacaacgaa--cccggcgcggaccgcgccaagg-aagccataacg---ggagagcccgtcgagcgt--ccacgccccggagac--ggtgcgcgtgcgatcggcgg-cgccttcttcgat--tatccaaaacgactctcggcaacggatatctaggctctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcc-cgtgaaccatcgagtctttgaacgcaagttgcgccccaagcctttaggccgagggcacgtctgcctgggtgtcacgc Commiphora_capuronii_4885 ---------------------------------------------------------------------------------------------------------------aaacgacg-ggagg-----ggtgg----cgc-gagctcc-cctcccgtcc----gcgtcgcggg-----gg--tcggaggcgtcc--------cgtccgcgggcgtcggcccgtgccc----cctcggcatcacaacgaa--cccggcgcggWccgcgccaagg-aagccataacg---ggagagcccgWMRaR?gt--ccacgccccggagac--gRWRMgcgtgYgaY?RgcgR-cgcctt?tt?Rat--tatYcaaaacgactMtcggcaacggatatMtaggctctcgcatSgatgaagaa?gtag?gaaatgcRatac?tgRtgtKaattRcagaat-------------------------------------------------------------------------------- Commiphora_capuronii_67 -------------aacaaggtttccgtaggtgaacct-gcggaaggatcattgtcggaccttacaa---aagtgaaaaactagcgaactc-atttgt-----------------------gaacg-----ggc------cttcaggcttg-tcgccccc------ggttcgctgg-----ga-----------------------gcctttggctctcggtta----------tgccgacacaRcaaacaa--atSSgcgcagMRcgcgcc?agtactaccggaatgaatggaatgccttctcR------cgatgtatcgcatgcctggcgtgcgtgaagtgtgggagtatcattgacattMgaataaaaaatgactctcggcaacggatatctaggctctcgcatcgatgaagaacgtagcaaactgcgatacttggtgtgaattgcagaatcc-cgtgaaccatcgagtttttgaacgcaagYtgcgc------------------------------------------- Commiphora_cf_capuronii_65 ?ggagaagttcgtaacaaggtttccgtaggtgaacct-gcggaaggatcattgtcggaccttacaa---aagtgMaaaactagcgaactc-atttgt-----------------------gaacg-----ggc------cttcaggcttg-tcgccctc------ggtYcRctgg-----gW-----------------------gcctttggctctcggtta----------tgcYgacacaacaaacaa--atcggcgcagMacgcgccaagtactaccggaatgaatggaatgccttctca------cgatgtatcgcatgcctggcgtgcgtgaagtgtgggagtatcattgacattcgaataaaaaatgactctcggcaacggatatctaggctctcgcatcgatgaagaacgtagcaaactgcgatacttggtgtgaattgcagaatcc-cgtgaaccatcgagtttttgaacgcaagttgcgcccaaagtcgctaggctgagggcacgtctg-------------- Commiphora_cf_ellipticaA_46 -aggagaagtcgtaacaaagtttctgtaggtgaacct-gcggaagaatcattgttgaaacctgcccgtcaRcaaaatgacccgcgaaccc-gttagtttgagaaaatgaaYgaacgacg-ggagg-----ggcag----cgc-aagctcc---------------------------------------------------------------------------------------------acaacgaa--cccgacgcggaccgtgccaagg-aagccataact---ggagagcccgttgagcgt--ccacgccccggagac--ggtgcgcgtacgattggtgg-cgccttctttgat--tatccaaaatgactYtcggcaatggatatctaggctctcgtatcgataaagaacgtagcgaaatgcaatacttggtgtgaactgcagaatcc-cgtgaaccatc?agtctttgaacgcaagttgcaccctaagccttta------------------------------- Commiphora_cf_ellipticaBursera_51 -aggagaagtYgtaacaaagtttccgtaggtgaacct-gcggaagaatcattgttgaaacctgcccgtcagcaaaatgacccgcgaaccc-gttagtttgagaaaatgaacgaacgacg-ggagg-----ggcag----cga-aagctcc---------------------------------------------------------------------------------------------acaacgaa--cccgacgcggaccgtgccaagg-aagccataact---ggagagcccgttgagcgt--ccacgccccggagac--ggtgcgcgtMcgattggtgg-cgccttctttgat--tatccaaaatgactctcggcaatggatatctaggctctcgtatcgatMaagaacgtagcgaaatgcaatacttggtgtgaactgYaKaatcc-cgtgaaccatcKagtctttgaacgcaagttgcaccctaagcctttaggc-Kagggcacgtctgc------------- Commiphora_elliptica_10I0901 -----------------------------------ct-gcgg-aggatcattgtcgaaacctgcccgccagcagaacgacccgcgaaccc-gttggttttacaaaa---------gacg-ggagg-----ggtgg----cgc-gagctcc-cctcccgtcc----gcgtcgcggg-----ggtatcggaggcgtcc--------cgtccgcgggcgtcggcccgtgccc----ccgcggcgccacaacgaa--cccggcgcggaccgcgccaagg-aagccataacg---ggagagcccgtcgagcgt--ccacgccccggagac--ggcgcgcgtgcgatcggcgg-cgccttcttcgat--catccaaaacgactctcggcaacggatatctaggctctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcc-cgtgaaccatcgagtctttgaacgcaagttgcgccccaagcctttaggccgagggcacgtctgcctgggtgtcacgc Commiphora_elliptica_43 ?ggagaagttcgtaacaaagtttccgtaggtgaacct-gcggaagaatcattgttgaaacctgcccgtcagtaaaatgacccgcgaaccc-gttagtttgagaaaatgaacaaacaacg-ggagg-----ggcag----cgc-aagctcc---------------------------------------------------------------------------------------------acaacgaa--cccgacgcggaccgtgccaagg-aagccataact---ggagagcccgttgagcgt--ccacgccccagagac--ggtgcgcgtacgattggtgg-cgccttctttgat--tatccaaaatgactctcggcaatggatatctaggctctcgtatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcc-cgtgaaccatcgagtctttgaacgcaagttgcgccctaagcctttaggccgagggcacgtctg-------------- Commiphora_falcata_10I2603 -----------------------------------ct-gcgg-aggatcattgtcgaaacctgcccgccagcagaacgacccgcgaaccc-gtcagttcgagagaacgaacaaacggcg-ggagg-----ggtgg----cgc-gagctcc-cctcccgtcc----gcgtcgcggg-----gc--tcggaggcgtcc--------cgtccgcgggcgtcggcccgtgccc----ccgcggtgccacaacgaa--cccggcgcggaccgcgccaagg-aagccataacg---ggagagcccgtcgagcgt--ccacgccccggagac--ggtgcgcgtgcgatcggcgg-cgccttcttcgat--catccaaaacgactctcggcaacggatatctaggctctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcc-cgtgaaccatcgagtctttgaacgcaagttgcgccccaagcctttaggccgagggcacgtctgcctgggtgtcacgc Commiphora_fraxinifolia_5831 -------------------------------------------------------------------------------------------------------------acaaacgacg-ggagg-----ggtRg----cgc-gagctcc-cctcccgtcc----gcgtcgcggR-----gR--tcggagacgt?Y--------cgKSSgcgggcgKcggcccgtg?cc----cYgcggcgccacaacgaa--cccggcgcggaccgcgccaagg-aagccataacg---ggagagcccgtcgagcgtScRcacgccMcgSagac--ggtgcgcgtgcggtcggcgg-cgccttcttcgat--tatccaaaacgactctcggcaacggatatctaggctctMgcatcgatgaagaacgtagcgaaatgcgatacYWggtgtgaattgcagaatcc-cgtgaaccatcgagtctttgaacgcaagttgcgccccaagcctttaggccgagggcacgtctgcYtgggtgtcacgc Commiphora_grandifolia_10I1301 -----------------------------------ct-gcgg-aggatcattgtcgaaacctgcccgccagcagaacgacccgcgaaccc-gttggtttgagaaaacg----aacgacg-ggagg-----ggcag----cgc-gagctcc-cYgcccgcccacctgcgccgcggg-----gg--tcggaggcgtcc--------cgtccgcgggcgtcgRccSgcgccc----ccgcggtgccacaacgaa--cccggcgcggaccgcgccaagg-aaaccataacg---ggagagcccgtcgagcgt--ccRcgccccggagac--ggcgcgcgtgcgatcggcgg-cgccttctttgat--tatccaaaacgactctcggcaacggatatctaggctctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcc-cgtgaaccatcgagtctttgaacgcaagttgcgccccaagcctttaggccgagggcacgtctgcctgggtgtcacgc Commiphora_grandifolia_53 -aggagaagtcataacaaggtttccgtaggtgaacca-gaggaaggatcattgccgaaacctgcccgcgagcagaacgacccgcgaactt-gttagtttgagaaaacaaacaaacaac--ggggg-----gacag----cgc-gagctcc-ctgcccgccc----acgtcgttgg-----gg--tcagaggcgtcc--------catccacgggcgttagcccatgccc----ccgcggtgctacaacgaa--cccgacgcggatcgtgccaggg-aagccataaca---ggagagcctgtcgagcgt--ccacgccccagagac--ggtgcgtgtgcgatcggcga-cgctgtctttgat--tatccaaaatgactctcggcaacggatatctaggctctcgcattgatgaagagggtagcgaaatgcgatacttggtgtgaattgcagaatcc-cgtgaaccatcgagtctttgaacgcaagttgcgccctaagcctttaggccgagggcacgtct--------------- Commiphora_granulifera_125 -----------------------------------------------------------tctgYccgccagtagaacgacccgcgaaccc-gttagtttgagaaaacgaacaaatgaca-ggagg-----ggtgg----cac-gagctcc-cctcccaacc----gcgtcRtggg-----gg--WcgSaggcgtcc--------cgtccacaggcatcggYScgYgccc----c?acgg?gccacaacgaa--ccSSacRcggacYgtgccaagg-MagcYataa?g---Raagagcccgtcgagcgt--ccaYgYcMcggagat--ggtgcgcgtgcgatcggcgg-cSYcttcttWgaY--tatccaaMaYgactctcKgcaacRgatatctMggctctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatccMcgtgaaYcatcgagtctt----------------------------------------------------------- Commiphora_guillauminii_100 -aggagaagtcgtaacaaggtttccgtaggtgaacct-gcggaaggatcattgtcgaaacctgcccgccagcagaacgacccgcgaaccc-gttggtttgagaaaacgaacaaacggcg-ggagg-----gRtgg----cac-Ragctcc-cctcccRtYY----gcatYgcgga-----tg--tcSgaggcgtcY--------tgtccgcgggYgtcggcctgtgccc----ccgYggcgccacaacgaa--cctggtgcggaccgcgccaagg-aagccataacg---ggagagtccgtYRagcRt--ccacKcctcRgagac--gRtgcgcgtgYgatcggcgg-cgccttcttcgat--taYccaaaacgactctcggcaacggatatctaggctctcgYatcgatgaaRaRcgtagcgaaatgcgatacttggtgtgaattgcagaatcc-Ygtgaaccatcgagtctttgaacgcaagttacgtcccaagcctttaggccgagggcacgtct--------------- Commiphora_lamii_10I2602_ITS12 -----------------------------------ct-gcggaaggatcattgtcgaaacctgcccgccagcagaacgacccgYgaaccc-gttggttagagaaaacg-----acgacRcggaSg-----ggMRg----cgcRga?ctcMgccKcccgccc----gcgtcgcgKc-----gS--KcggaggcgWSc--------cgtccgcgS?cgtSggcYcgtgccc----ccgcggcgccRcRacgaa--cccRgcgcggaScgSgccaagg-aagccataacg---KRagagccSgtcgagcgt--ccacgccccg?agac--gRKgcgcgtgcgatcgacgS-cgccttctttcWt--tatYYaaWMcgactctSggc?aSggatat?tRgKYtctcgYWtcgWtgaa?aacgta?cgaaatgcRat?cttg?tgtga?ttg-------------------------------------------------------------------------------------- Commiphora_cf_marchandii_117 -aggagaagtcgtaacaaggtttccgtaggtgaacct-gcRgaaggatcattgtcgatRYct-tacWcaaWcagcWcgaccggtgaactt-gttSttttgtcaaactagac---------ggaggcacacggcgttcgtcgccatgggcc-tcccgtgctgggatacaacgcggg------------------------------gctagccagtcccgWtgtYtctMc-------cRgcataaaaacgaacccccggcgttgMacgcKccaaggaacacaactaca---tgacgttctcttgY---------cgtcccggagac--ggtgcattggcaatgagcaa-cgcaaaatttg----tatccataacgactctcggcaacggatatctcggctctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcY-cgtgaaccatcgagtctttgaacgcaagttgcg-------------------------------------------- Commiphora_marchandii_10II1504 -----------------------------------ct-gcgg-aggatcattgtcgaaacctgcccgccagcagaacgacccgcgaaccctgtcagttcgagagaacgagcaRacggcg-ggagg-----ggcag----cgc-aagctcc-ccgcccgccc----Scgtcgcggg-----gg--tcggaggcgtcc--------cgtccgcgggcgtcggccYgYgccc----cMgcggcgccacaacgaa--cYcggcgcggaccgcgccaagg-aagccataacg---ggagagcccgtcgagcgt--ccacgccccggagac--ggtgcgcgtgcgatcggcgg-cgccttcttcgat--tatccaaaacgactctcggcaacggatatctaggctctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcc-cgtgaaccatcgagtctttgaacgcaagttgcgccccaagcctttaggccgagggcacgtctgcctgggtgtcacgc Commiphora_marchandii_143 ?ggagaagttcgtaacaaggtttccgtaggtgaacct-gcggaaggatcattgtcgaaacctgcccgccagcagaacgacccgcgaaccc-gtcagttcgagagaacgagcaaacggcg-ggagg-----ggcag----cgc-gagctcg------------------------------------------------------------------------------------------------------------------------tacgg-aagccataacg---ggagagcccgtcgagcgt--ccacgccccggagac--ggtgcgcgtgcgatcggcgg-cgccttcttcgat--tatccaaaacgactctcggcaacggatatctaggctctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcc-cgtgaaccatcgagtctttgaacgcaagttgcgccccaagcctttaggccgagggcacgtctg-------------- Commiphora_morondavensis_10II1405_ITS12 --------------------------taggtg-acct-gcgg-aggatcattgtcgaaacctgcccgccagcagaacgacccgcgaaccc-gttRgtcttacaaaa---------gacg-ggagg-----ggtgg----cRc-gagctcc-cctcScKYcc----gYgtcgYgSg-----Sg--tcggaggcgtcc--------cRtccgcgggcgtcggcccgtgccc----ccgcggcgccacaacgaa--cccggcgcgSaccgcgccaagg-aagccataacg---ggagagcccgtcgagcg---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Commiphora_pterocarpa_106 -aggagaagtcgtaacaaggtttccgtaggtgaacct-RcggaaggatcattgtcRaaacctgcccgccagcagaacgacccgcgaaccc-gttagtttgagaaaacgaaaaaacgacg-ggagg-----gg-gg----cgt-gaactcc-cctcccgtcc----gtgtcgYgag-----gg--tcggaggcRtcc--------cgtcagtgggcgtcggcccgtgccc----ccccgacgccacaacgaa--ccgggtgcagaccgcgccaagg-aagccataacg---ggagagcccgtcgggcgt--ccacgccccggagac--ggtgcgcgtgcaatcggcga-cgctttctttcat--tatccaaaacgactctcggcaacggatatctaggctctcgcatcgatgaagaacgtagcgaaatgcaatacttggtgtgaattgcagaatcc-cgtgaaccatcgagtctttgaacgcaagttgcgccccaagcctctaggccgagggcacgtctg-------------- Commiphora_pterocarpa_10I2811 ------------------------------------------------cattgtcgaaacctgc??gMcagcagaacgacccgYgaaYYY-gttagtttgagaaaacgaaSaaacgacg-ggagg-----Rgcag----cgc-Sagctcc-ccgcccKtcc----gcgtcgSgWg-----gK--tcggagKcgtcc--------cgtccgcgggcgtcggcccgtgccc----ccgcggYgccacaacgaa--cccggcgcggaccgcgccaagg-aagccataacg---ggagagcccgtcgagcgY--ccRcgccccggagac--ggtgcgcgtgcgatcggcgg-cgccttcttcgat--tatccaaaacgactctcggcaacggatatctaggctctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcc-cgtgaaccatcgagtctttgaacgcaagttgcgccccaagcctttaggccgagggcacgtctgcctgggtgtcacgc Commiphora_sahafariensis_10I1205 ----------------------tctgtaggtg-acct-gcggaaggatcattgtcgaaacctgcccgccagcagaacgacctgcgaaccc-gttggtttgagaaaacaaacagacgacg-ggagg-----ggtgg----cac-gagcccc-cctcccgtcc----gcgttgcagg-----gg--tcggaggcttcc--------cgtctgcgggcgtcggcccgtgccc----atgcggtgccacaacgaa--cccggcacagaccgcgccaagg-aagccataacg---ggagagctcgtcgagcct--ccacgccccggagac--ggtgcatgtgcaatcggcga-cgccttcttcgat--tatccaaaacgactctcggcaacggatatctaggctctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcc-tgtgaaccatcgagtctttgaacgcaagttgcaacccaagcctttaggtcgagggcacgtctgcctg---------- Commiphora_sp_G_79 -aggagaagtcgtaacaaggtttccgtaggtgaacct-gcggaaggatcattgtcgaaacctgcac---agcagaacgacccgtgaacac-----gtttcatcacaagggggaggcacg-ggtgt-----tatagcccccgt-gatcgcc-cccacctgccgtcggggcgaaggg-----cgtttcgcatgctcccgtgccctgtgtgcgtgggcagcgactcgttcccgccacgtcggcacaacaacgaac-cccggcgcggaatgcgccaagg-aaaaagcaaca---agagagcgatgctcccgt-----cgccccggacac--ggtgtgcgtgcgggcagcaaccgccttctctcatt-aatccaaaacgactctcggcaacggatatctcggctctcgcatcgatgaagaacgtagcgaaatgcgatacttggtgtgaattgcagaatcc-cgtgaaccatcgagtctttgaacgcaagttgcgccccaagcctttaggccgagggcacgtctg-------------- Commiphora_spnov_Bursera_82 --------------------------taggtgaacct-gcggaaggatcattgtcgaaacttgcccgccagcagaacgacMcgYgaaccc-gttagtttgagaaaacgaacaaacgacR-ggagg-----ggYRg----YRc-gagctcc-ccKcctgYcY----gYgtcgcgRg-----gg--tcRgaggcRtcc--------YRtctRcggtcgtcggccYgtKYcc----ccgWggYgccaYaacSaa--cccgacgYRgaccgYgccaagg-aaKccataacg---ggagagYccgtcgagcMt--ccaYgccccggagac--gRtgcgYKtgYKatYgRcRg-YgccttcttYgat--tatcctaaacgactctcggYaacRgatatctaggctctcgcatcRatgaagaaMgtagcgaaatRcRatacttggtgtgaattgcagaatcc-cgtRaaccatcgagtctttgaacgcaagttRcgccccaagcctttaggcYgagggcacgtct--------------- ; END; BEGIN TREES; Title Com_ITS_Rhynchocarpa; LINK Taxa = Taxa; TRANSLATE [0] 1 Commiphora_lasiodisca_10I1112, [1] 2 Commiphora_lasiodisca_59, [2] 3 Commiphora_lasiodisca_84, [3] 4 Commiphora_aprevalii_10I2004, [4] 5 Commiphora_aprevalii_128, [5] 6 Commiphora_bardotiae_10I1101, [6] 7 Commiphora_bardotiae_62, [7] 8 Commiphora_brevicalyx_brev_10I2405, [8] 9 Commiphora_brevicalyx_vez_10I2009, [9] 10 Commiphora_capuronii_10I1504, [10] 11 Commiphora_capuronii_4885, [11] 12 Commiphora_capuronii_67, [12] 13 Commiphora_cf_capuronii_65, [13] 14 Commiphora_cf_ellipticaA_46, [14] 15 Commiphora_cf_ellipticaBursera_51, [15] 16 Commiphora_elliptica_10I0901, [16] 17 Commiphora_elliptica_43, [17] 18 Commiphora_falcata_10I2603, [18] 19 Commiphora_fraxinifolia_5831, [19] 20 Commiphora_grandifolia_10I1301, [20] 21 Commiphora_grandifolia_53, [21] 22 Commiphora_granulifera_125, [22] 23 Commiphora_guillauminii_100, [23] 24 Commiphora_lamii_10I2602_ITS12, [24] 25 Commiphora_cf_marchandii_117, [25] 26 Commiphora_marchandii_10II1504, [26] 27 Commiphora_marchandii_143, [27] 28 Commiphora_morondavensis_10II1405_ITS12, [28] 29 Commiphora_pterocarpa_106, [29] 30 Commiphora_pterocarpa_10I2811, [30] 31 Commiphora_sahafariensis_10I1205, [31] 32 Commiphora_sp_G_79, [32] 33 Commiphora_spnov_Bursera_82; TREE PAUP_1 = ((12:0.00220553,13:0.00046449):0.23789579,(25:0.27472926,(7:0.17428448,(32:0.17138549,((3:0.00000001,(1:0.00000001,2:0.00000001):0.00000001):0.09182355,((21:0.08844206,(17:0.02626709,(14:0.00290904,15:0.00295486):0.0156664):0.05054816):0.02069977,(29:0.04598185,((5:0.03495782,22:0.02170653):0.0275615,(33:0.02103303,((23:0.03140347,31:0.06224485):0.0026373,(((30:0.00241327,(9:0.00483033,20:0.01694802):0.00265461):0.00711835,(18:0.00797238,(8:0.01105288,(26:0.00258544,27:0.0176384):0.00545645):0.01176605):0.01170906):0.000072379825,(6:0.0069939,((4:0.00462294,24:0.0135469):0.00543184,((10:0.00000001,11:0.00000001):0.00703059,(19:0.0086027,(16:0.00000001,28:0.00372458):0.00981693):0.0):0.00000001):0.00000001):0.00230136):0.0):0.00212468):0.00040824):0.0):0.0):0.05277522):0.04908957):0.0414898):0.0365688):0.23789579)[% ] [% ] [% setBetweenBits = selected ]; END;