#NEXUS [written Tue Jul 10 10:06:13 EDT 2012 by Mesquite version 2.75 (build 564) at Robert-Baratheons-MacBook.local/10.0.1.136] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=30; TAXLABELS Dromaeosauridae Anas_platyrhynchos Chaunatorquata Gallus_gallus Crax_pauxi Crypturellus_undulatus Lithornis Iaceornis_ Ichthyornis Hesperornis Baptornis Songlingornis Patagopteryx Cathayornis Concornis Neuquenornis Gobipteryx Vorona Apsaravis Confuciusornis Archaeopteryx Yixianornis Yanornis Sapeornis Protopteryx Hongshanornis Archaeorynchus Jeholornis Pengornis Xiangornis ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=205; FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1 2 3 4 5 6"; MATRIX Dromaeosauridae 0000000?000000000000000000?00000?000?00??0000???00000000000000000000?100?00000000(0 1)0000?00000?000000000000000??0010000?00000000100001000000??0000000?0000000001000(0 1)00000(0 1)000(0 1)0000000000000000000000000(0 1)00(0 1)(0 1)?00 Anas_platyrhynchos 21111?10211211111110112211021112111111101100011110112121010106211011121311113120110??1011010?1(0 1)1111111000011100110001211100001011101111111123114011010121021?0111111101111110111011210211002113112(2 3)2221000102 Chaunatorquata 11111?10211211(1 2)111101022110111121111111011000111101121210121062110111113111140101(0 1)01110110111111011111010211100110001211100001011101101111123114011011121021?011111111111111211102121021200211311222222100100 Gallus_gallus 11111?102112112111101122110111111111111011000110101121210101162100111(1 2)13111121101200?12110111111111111100111110110001211100001011101101111113114011001221021?011111111111111211102121021100211311232222100111 Crax_pauxi 21111?102112112111101122110111111111111011000110101121210101162110111213111121101200012110111111111111100111110110001211100001011101101111113114011011221021?011111111111111211102121021100211311232222100110 Crypturellus_undulatus 21111?11211211(0 1)01010001111101011001101111111110010102121010116210111221311112?1010000121101101011111111001111101100012111000011101011011111031140110111210201011110110111111211102121021100211311222221(0 1)00101 Lithornis 21111?1121121100?0100011111010110?11(0 1)1101?1111?01?102121012?0(5 6)11?1?1(1 2)(1 2)13111221001000(0 1)10110110111101111001111100110001(1 2)1110000101010110111111311301110(0 1)12102000?111011011111121110212101100021131122222110010(0 1) Iaceornis_ ???????????????????????????????????????????????????????????????????????31?02(2 3)11????1?1011010?111101111?01????????????????????????????????1113114011110121020001110??1?11?11121110212?121100211??????????????? Ichthyornis (1 2)110010?11????????0??????10(0 1)1?111011101001020???101?(0 1)1200111?(4 5)110021(1 2)?1311022010100001011010?11110111111011110010110110010000101(0 1)10111211112311201110012?12000111(0 1)00101?11?12111021211111002113112(1 2)2?21000002 Hesperornis 1110010?1111112001?1?0?1010??1110011100??00?0???101021210110050100112111?00010010?0001??0?10?0???000010??0?????????0???0????0?????????????????????????????201?11110000111111211102121111100211311212221022002 Baptornis (1 2)11???????????????????????????11001??00??1??????????212101100401001121?(1 2 3)??012?0??????1010?10?0???000?????0?????????0???0??????????01??(0 1)1(0 1)?????????????????201?11110000111111211102121111100211211(1 2)1?221?020?2 Songlingornis (0 1)010010?01????????????????????????????????1??????0?????????????????????31??(1 2)?0201(0 1)00110110???1?11011????????????????????????????????????????????????????????????????????????????????????????????????????????? Patagopteryx ???????????????????0?0?1??????00??111110000?????????20100000030????????????0?????????10010????0101?11110(0 1)00???(0 1)?10?0??001000001(0 1)0001??(1 2)00???3?0????????10?20?0110000?011011?2?0????20?0?000(1 2)11310(0 1)110000000?(0 1) Cathayornis (0 1)000010?00??(0 1)?????????????????????????????0??????0(0 1)????0111??201?0?10??30??1??101310011011????010?0110000100101100?010001111100(0 1)?1??1???2101210?1?1?01?110101201??000000000?11???11(1 2)0?0?0?1(0 1)1?(0 1)?00?????0????? Concornis ???????????????????????????????????????????????????????0111????????10??30??1?0101210011011?0?0010001?0???1001?1100?0100?1???10???1(0 1)1??(1 2)????????????????11????(1 2)0?????????00?1???????20?0?00??111?00??1???11??0 Neuquenornis ???????????????????????????????????????????????????????0110????????????31?????101(1 2)1001?01100?001?001?0???2??1???0(0 1)?0???0?????(0 1)???1?11???2???210?1???01??????????????????????110?1?1?0???????1?(0 1)?0???1?0111??? Gobipteryx 11111?10010000?001?1?0?10?????00?????0???0??0???1????????????(3 4 5)?????10???????????131??1101100?0?1000110?002001?1?0110???0????????????11?121??(0 1 2)?0??????1?1??1???????????0?001???0????1?10?00111111000?11?111?0? Vorona ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????1???????10101011111200001?20000000 Apsaravis ????1?10?????????????????????????0?1(0 1)?????1?0???????2?20010??4010011???31??1?????????1001000?0?10001111011111(0 1)01011010001111100001011021110?(2 3)11201100?12??2010111(0 1)0010111111?1110??2?101211211311111?201000?1 Confuciusornis 11111?(0 1)0010010???????????10??00??011200??01(1 2)0111110010000110010100010(0 1)020001200001(0 1)000?01000?0??0??0000000000?000211??0010000000010100210101110?100?000100101201000000000001110101120001000111100001110111?00 Archaeopteryx 0000010?000000000??000110??00?0??000?00???000???00100000000000000000?00????????0000000?00000?0000000000000000?0010000?000??000?00001000000??0000000?00000000010000000?00000?000000000?00?0?(0 1)1010000000?1(0 1)(0 1)??? Yixianornis 101?010001???????????01??1????????11(0 1)?????1?0?????100?2001100301???111031??(1 2)??20100011011010?111101111100111100?0110??001?000???0?011021(0 1)10?3112001100(0 1)200?00001100000?0001?21?101?2???????1113111(0 1)?1???00??1 Yanornis 1010010001?01????????????10???????1???????1?0?????100020011?0301??0???0310?(1 2)??20100001011010?1?11?1111000111??0101?0100?10000?0?????1021(0 1)1013111001100(0 1)200?0??01?000?0?0001??1?????2??0??00?11(2 3)11(0 1)(0 1)?12??00??1 Sapeornis 1000010000000?????????????????????????????1?0?????0000(0 1)00010010000010?0????????0020000?0000??0?00000000001000?0?01?10?0010000?1???0?00?1(0 1)10?1111001100(0 1)10?00?(1 2)00?00?0000000???000?010?0??00??0000000?0??11??0 Protopteryx (0 1)00?010?00000????????????10?????????????????0?????0???(0 1)001100(2 3)01?0?10?030??1(1 2)0101210011(0 1)10?0?(0 1)010(0 1)?1110001000?0?0000??001??0????????100?010?110000??00(0 1)100(0 1)0??0??0000??000??11??????0?????????(0 1)?000?1???11??0 Hongshanornis 11110?0?010(0 1)1????????????10???????????????1(0 1)0?????1?0?(0 1)001100(2 3)01?0?111031??(1 2)2?20120001011000?(0 1)0100011110111110010100100010000?0(0 1)??011001?1??3112001?00(0 1)200?0??0??0?00?000011?1?101?(1 2)1001000(1 2)1131111112?000?01 Archaeorynchus 1?????000(0 1)000?????????????????????????????0?0???01?0?1?00010?(1 2 3)0???????031??1(1 2)0(1 2)01000010?1(0 1)???0010??111000211??0?01?0??0?10000?????0?10???10??10(1 2)00??0??100?0100??0000??0001?21???1?(0 1)??0??00(0 1)1?1?00?01???00??0 Jeholornis ??????????????????????????????????????????????????0???????????????????0??????????????10?10?0?0?0?0?11000?100??0000?00?0???000?1???0???0??1??1001?010000100(0 1)0020?00?00??0000????00(0 1)000?0??00?(0 1)00000?0????00??? Pengornis 0000010?00000???????????????????????????????0?????0?(1 2)??0011??(1 2)0??0010?0????????012(0 1)001?010??????0??1???012111(0 1)0?011010001(0 1)(0 1)1?????1??11???10(1 2)(1 2)?0??01??1?11?????0??0??????000??10????(1 2)0?0??0(0 1)?1?1?00??11??11??0 Xiangornis ???????????????????????????????????????????????????????????????????????2???????013?001??1100?1??1?????????11???101?0????????????????????????31?3101111??????????????????????????????????????????????????????? ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS; TYPESET * UNTITLED = unord: 2 - 8 10 - 11 13 - 23 25 - 31 33 - 52 54 56 - 61 64 - 66 68 - 71\3 73 - 76 78 80 - 81 83 - 105 107 - 113 115 - 118 120 - 140 143 145 - 150 153 - 154 156 - 157 159 - 160 162 - 172 174 - 177 179 181 - 182 184 186 - 187 189 - 190 192 - 193 200 - 204, ord: 1 9 - 12\3 24 32 53 55 62 - 63 67 69 - 70 72 77 79 - 82\3 106 114 119 141 - 142 144 151 - 152 155 - 161\3 173 178 180 - 183\3 185 - 194\3 195 - 199 205; END; BEGIN TREES; Title Imported_trees; LINK Taxa = Taxa; TRANSLATE 1 Dromaeosauridae, 2 Anas_platyrhynchos, 3 Chaunatorquata, 4 Gallus_gallus, 5 Crax_pauxi, 6 Crypturellus_undulatus, 7 Lithornis, 8 Iaceornis_, 9 Ichthyornis, 10 Hesperornis, 11 Baptornis, 12 Songlingornis, 13 Patagopteryx, 14 Cathayornis, 15 Concornis, 16 Neuquenornis, 17 Gobipteryx, 18 Vorona, 19 Apsaravis, 20 Confuciusornis, 21 Archaeopteryx, 22 Yixianornis, 23 Yanornis, 24 Sapeornis, 25 Protopteryx, 26 Hongshanornis, 27 Archaeorynchus, 28 Jeholornis, 29 Pengornis, 30 Xiangornis; TREE Imported_tree_0 = (1,(21,(28,(24,(20,(25,((27,(18,(13,26,(19,((9,(8,(((2,3),(4,5)),(6,7)))),(10,11))),(23,(12,22))))),(29,(16,(30,(17,(14,15)))))))))))); END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 205; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1341929174051; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6987671875383715371; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 7541001280774720691; mqVersion 275; checksumv 0 3 19882361 null getNumChars 205 numChars 205 getNumTaxa 30 numTaxa 30 short true bits 127 states 127 sumSquaresStatesOnly 57606.0 sumSquares 57606.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 148; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 467; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; endTell; end;