NEXUS
[File created by TreeBASE:  1/16/09  15:36:45]
[Matrix accession#: M4007]

BEGIN TAXA;
	TITLE M4007;
	DIMENSIONS  NTAX=11;
	TAXLABELS
		Brunellia_colombiana	Platylophus_trifoliatus	Hooglandia_ignambensis	Spiraeanthemum_brongniartianum	Spiraeanthemum_ellipticum	Spiraeanthemum_meridionale	Spiraeanthemum_pubescens	Spiraeanthemum_densiflorum_YP667	Spiraeanthemum_densiflorum_JM4575	Spiraeanthemum_macgillivrayi	Spiraeanthemum_samoense
	;
END;

BEGIN CHARACTERS;
	TITLE M4007;
	DIMENSIONS NCHAR=952;
	FORMAT DATATYPE = DNA MISSING = ? GAP = - ;
	MATRIX
		Brunellia_colombiana                    CTTTCAAATTCAGAGAAACCCTGGAATTAAAAATGGTCAATCCTGAGCCAAATCCTGTTTTCCGAAAAAAAAAAAAAGGTTCAGAAAGCGAGAA------TAAAAAAAA--GGATAGGTGCAGAGACTCAACGGAAGCTGTTCTAACACTAACAAATGGAGTTGATTGCGTTGCGTTAGTAAAGGAATCTTTCCGTCAAAACCCCAGAAAGGATAAAG---TAAAAAAA-GGATAAAAGTAAAAAGATAAACCCATATACATACGTATACATACTGAAATACTCTCTCAAATGATTAATGATGACCCGAATCCGTGTTTTTTATAAAACTAATTATAAAAATAATGAAAGATTTGTTGTGAATCGATTCCAAGTTGAAGAAAGAATCGAATATTAATTGATCAAATCATTCACTCCAGCGTCGGATAGATCTTTTGAAAACCTGATTAATCGGACGAGAATAAAGATAGAGTCCCGTTCTACATGTCAATATTGACAACAATGAAATTTATAGTAAGAGGAAAA????????????????????????????????????????????????????????????????????????????TTCTCTCT-TTCGTTAACGAGTCAAAATTCGTTATCTTTCTCATTCATTTTACTCCTTCACAAACAAATGGATCCAGGCGGAAATTTTTTTTTCTTATTCTTACTACAAGTCTTGTGATAGATATGATACACGTACAAATGAACATCTTTGAGCAA---------------------------------------------------------AGTCTTCTTTTT---------GAAGATCCAAAAAATTTCAGTGCCTGGTAA-GACTTTGTAATACTTTTTTT-CGTCTTTTTAATT-GAC----------ATAGACCTAAGTCATCTAGTAAAATCAGGATGATACGTG
		Platylophus_trifoliatus                 CTTTCAAATTCAGAGAAACCCTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCCGTTTTCCGAAAACAAA-CAAAGGTTCAGAAAGCGAGAA------TAAAAAAAA--GGATAGGTGCAGAGACTCAACGGAAGCTGTTCTAACACTAACAAATGGAGTTGACTGCGTTGCGTTAGTAAAGGAATCCTTCCCTCAAAACTCCAGAAAGGGTAAAG--------TAAAGGATAAA--------------CCCATATACATACGTATACGTACTGAAATACTATCTCAAATGATTAATGATTACCTGAATTCGTATTTTTTATAAAAATAA------------TGAAAGCTTTGTTGTGAATTGATTCCAAGTTGAAGAAAGAATCGAATATTAATTGATCAAATCATTCACTCCAGTGTCGGATAGATCTTTTGAATACCTGATTAATCAGACNANAATAAATATATAGTCCCATTCTACATGTCAATATTGACAANAATGAAATNTATANNAANNNNAAAA????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????AACTTACAAAGCCTTCTTTTT--AATTTTTGAAGATCCAAAAAATTTAAG-GCCTGGGAA-TACTTTGTAATACTTTTTTT-CGTCTTTTT-ATT-----TTAATTGACATAGACCCAAGTCATCTAGTAAAATGAGGATGATACGTC
		Hooglandia_ignambensis                  CTTTCAAATTCAGAGAAACCCTGGAATTAAAAATGGGCAATCCTGAGCCAAATCCTGTTTTCCGAAAACAAA-CAAAGGTTCAGAAAGCGAGAA------TAAAAAAAA--GGATAGGTGCAGAGACTCAACGGAAGCTGTTCTAACACTAAAAAATGGGGTTGACTGCGTTGCGTTAGTAAAGGAATCCTTCCCTCAAAACTCCAGAAAGGGTAAAG--------TAAAGGATAAA--------------CCCATATACGTACATATACGTACTGAACTACTATCTCAAATGATTAATGATGACCTGAATTCGTATTATTGATAAAAATAA------------TGAAAGGTTTGTTGTGAATGGATTCCAAGTTGAAGAAAGAATCGAATATTAATTGATCAAATCATTCACTCCAGTGTCGGATAGATCTTTTGAAGACCTGATTAATCGGACGAGAATAAAGATAGAGTCCCGTTCTACATGTCAATATTGACAACAATGAAATTTATAGTAAGGGGAAAA?????????????????????????????????????????????????????????????CTCCCTAATTATTTATTCTCTCTGTTCGTTAACGATTCAAAATTCGTTATCTTTCTCATTCATTTTACTCTTTCACAAACAAATGGATCCTGGCGGAAATTTTTTTT-CTTATTCTTACTACAAGTCTTGTGATAGATATGATACACGTACAAATGAACATTTTTGAGCAAGGAATCCCCATTTGAATGATTAACAATCCATATCATTACTCGTACTGAAACTTACAAAGCCTTCTTTTTTTTATTTTTGAAGATCCAAAAAATTTAAG-GACTGGTAT-TACTTTGTAATACTTTTTTT-CGTCTTTTTAATT-GAC----------ATAGACCCAAGTCATCTAGTAAAATGAGGATGATACGTC
		Spiraeanthemum_brongniartianum          CTTTCAA-TTCAGAGAAACCCTGGAATGAAAAATGGGCAATCCTGAGCCAAATCCTGTTTTCCGAAAACAAA-CAAAGGTTCAGAAAGCGAGAA------TAAAAAAAAAAGGATAGGTGCAGAGACTCAACGGAAGCTGTTCTAACACTAACAAATGGAGTTGACTGCGTTGCGTTAGTAAAGGAATCCTTCCGTCAAAACTCCAGAAAGGATAAAGTGATAAAGTAAAGGATAAA--------------CCCATATACATACGTATACGTACTGAAATACTATCTCAAATGATTAATGATGACCCGACTCCGTATTTTTTATAAAAATAA------------TGAAAGGTTTGTTGTAAATTGATTCCAAGTTGAAGAAAGAATTGAATATTAATTGATCAAATCATTCCCTCCAGTGTCGGATAGATCTTTTGAAGACCTGATTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATATTGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAAGCCCGTTTGACTCCCTAATTATTTATTCTCTCTGTTCGTTAACGATTCAAAATTCGTTATCTTTCTCATTCATTTTACTCTTTCACAAACAAATGTATCCAGGCGGAAATTTTTTTTTCTTATTCTTACTACAAGTCTTGTGATAGATATGATACACGTACAAATGAACATCTTTGGGCAAGGAATCCCCATTTGAATGATTAACAATCCATATCATTACTCGTACTGAAACTTACAAAGTCCTCTTTTT--GATTTTTGAAGATCCAAAAAATTTCAG-GCCTGGTAC-TACTTTGTAATACTTTTTTT-CCTCTTTTTAATT-GACTTTAATTGACATAGACCCAAGTCATCTAGTAAAATGAGGATGATACGTC
		Spiraeanthemum_ellipticum               CTTTCAA-TTCAGAGAAACCCTGGAATGAAAAATGGGCAATCCTGAGCCAAATCCTGTTTTCCGAAAACAAA-CAAAGGTTCAGAAAGCGAGAA------TAAAAAAAAA-GGATAGGTGCAGAGACTCAACGGAAGCTGTTCTAACACTAACAAATGGAGTTGACTGCGTTGCGTTAGTAAAGGAATCCTTCCGTCAAAACTCCAGAAAGGATAAAGTGATAAAGTAAAGGATAAA--------------CCCATATACATACGTATACGTACTGAAATACTATCTCAAATGATTAATGATGACCCGACTCCGTATTTTTTATAAAAATAA------------TGAAAGGTTTGTTGTAAATTGATTCCAAGTTGAAGAAAGAATTGAATATTAATTGATCAAATCATTCCCTCCAGTGTCGGATAGATCTTTTGAAGACCTGATTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATATTGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAAGCCCGTTTGACTCCCTAATTATTTATTCTCTCTGTTCGTTAACGATTCAAAATTCGTTATCTTTCTCATTCATTTTACTCTTTCACAAACAAATGTATCCAGGCGGAAACTTTTTTTTCTTATTCTTACTACAAGTCTTGTGATAGATATGATACACGTACAAATGAACATCTTTGGGCAAGGAATCCCCATTTGAATGATTAACAATCCATATCATTACTCGTACTGAAACTTACAAAGTCCTCTTTTT--GATTTTTGAAGATCCAAAAAATTTCAG-GCCTGGTAC-TACTTTGTAATACTTTTTTT-CGTCTTTTTAATT-GACTTTAATTGACATAGACCCAAGTCATCTAGTAAAATGAGGATGATACGTC
		Spiraeanthemum_meridionale              CTTTCAA-TTCAGAGAAACCCTGGAATGAAAAATGGGCAATCCTGAGCCAAATCCTGTTTTCCGAAAACAAA-CAAAGGTTCAGAAAGCGAGAA------TAAAAAAAAA-GGATAGGTGCAGAGACTCAACGGAAGCTGTTCTAACACTAACAAATGGAGTTGACTGCGTTGCGTTAGTAAAGGAATCCTTCCGTCAAAACGCCAGAAAGGATAAAGTGATAAAGTAAAGGATAAA--------------CCCATATACATACGTATACGTACTGAAATACTATCTCAAATGATTAATGATGACCCGACTCCGTATTTTTTATAAAAATAA------------TGAAAGGTTTGTTGTAAATTGATTCCAAGTTGAAGAAAGAATTGAATATTAATTGATCAAATCATTCCCTCCAGTGTCGGATAGATCTTTTGAAGACCTGATTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATATTGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAAGCCCGTTTGACTCCCTAATTATTTATTCTCTCTGTTCGTTAACGATTCAAAATTCGTTATCTTTCTCATTCATTTTACTCTTTCACAAACAAATGTATCCAGGCGGAAATTTTTTTTTCTTATTCTTACTACAAGTCTTGTGATAGATATGATACACGTACAAATGAACATCTTTGGGCAAGGAATCCCCATTTGAATGATTAACAATCCATATCATTACTCGTACTGAAACTTACAAAGTCCTCTTTTT--GATTTTTGAAGATCCAAAAAATTTCAG-GCCTGGTAC-TACTTTGTAATACTTTTTTTTCGTCTTTTTAATT-GACTTTAATTGACATAGACCCAAGTCATCTAGTAAAATGAGGATGATACGTC
		Spiraeanthemum_pubescens                CTTTCAA-TTCAGAGAAACCCTGGAATGAAAAATGGGCAATCCTGAGCCAAATCCTGTTTTCCGAAAACAAA-CAAAGGTTCAGAAAGCGAGAA------TAAAAAAAAA-GGATAGGTGCAGAGACTCAACGGAAGCTGTTCTAACACTAACAAATGGAGTTGACTGCGTTGCGTTAGTAAAGGAATCCTTCCGTCAAAACTCCAGAAAGGATAAAGTGATAAAGTAAAGGATAAA--------------CCCATATACATACGTATACGTACTGAAATACTATCTCAAATGATTAATGATGACCCGACTCCGTATTTTTTATAAAAATAA------------TGAAAGGTTTGTT--------ATTCCAAGTTGAAGAAAGAATTGAATATTAATTGATCAAATCATTCCCTCCAGTGTCGGATAGATCTTTTGAAGACCTGATTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATATTGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAAGCCCGTTTGACTCCCTAATTATTTATTCTCTCTGTTCGTTAACGATTCAAAATTCGTTATCTTTCTCATTCATTTTACTCTTTCACAAACAAATGTATCCAGGCGGAAATTTTTTTTTCTTATTCTTACTACAAGTCTTGTGATAGATATGATACACGTACAAATGAACATCTTTGGGCAAGGAATCCCCATTTGAATGATTAACAATCCATATCATTACTCGTACTGAAACTTACAAAGTCCTCTTTTT--GATTTTTGAAGATCCAAAAAATTTCAG-GCCTGGTAC-TACTTTGTAATACTTTTTTT-CGTCTTTTTAATT-GACTTTAATTGACATAGACCCAAGTCATCTAGTAAAATGAGGATGATAC???
		Spiraeanthemum_densiflorum_YP667        CTTTCAA-TTCAGAGAAACCCTGGAATGAAAAATGGGCAATCCTGAGCCAAATCCTGTTTTCCGAAAACAAA-CAAAGGTTCAGAAAGCGAGAATAAAAATAAAAAAAA--GGATAGGTGCAGAGACTCAACGGAAGCTGTTCTAACACTAATAAATGGAGTTGACTGCGTTGCGTTAGTAACGAAATCCTTCCGTCAAAACTCCAGAAAGGATAAAGTGATAAAGTAAAGGATAAA--------------CCCATATACATACGTATACGTACTGAAATACTATCTCAAATGATTAATGATGACCCGACTCCGTATTTTTTATAAAAATAA------------TGAAAGGTTTGTTGTGAATTGATTCCAAGTTGAAGAAAGAATTGAATATTAATTGATCAAATCATTCACTCCAGTGTCGGATAGATCTTTTGAAGACCTGATTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATATTGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAAGCCCGTTTGACTCCCTAATTATTTATTCTCTCTGTTCGTTAACGATTCAAAATTCGTTATCTTTCTCATTCATTTTACTCTTTCACAAACAAATGGATCCAGGCGGAAATTTTTTTTTCTTATTCTTACTACAAGTCTTGTGATAGATATGATACACGTACAAATGAaCATCTTTGAGCAaGGAaTCCCCATTTGAATGATTAACAATC----------CTCGTACTGAAaCTTACAAaG-CCTCTTTTtt-GATTTTtGAAgATCcAAAAAaTT-CaG-GC-tGG???????????????????????????????????????????????????????????????????????????????????????????
		Spiraeanthemum_densiflorum_JM4575       CTTTCAA-TTCAGAGAAACCCTGGAATGAAAAATGGGCAATCCTGAGCCAAATCCTGTTTTCCGAAAACAAA-CAAAGGTTCAGAAAGCGAGAATAAAAATCAAAAAAA--GGATAGGTGCAGAGACTCAACGGAAGCTGTTCTAACACTAATAAATGGAGTTGACTGCGTTGCGTTAGTAAAGAAATCCTTCCGTCAAAACTCCAGAAAGGATAAAGTGATAAAGTAAAGGATAAA--------------CCCATATACATACGTATACGTACTGAAATACTATCTCAAATGATTAATGATGACCCGACTCCGTATTTTTTATAAAAATAA------------TGAAAGGTTTGTTGTGAATTGATTCCAAGTTGAAGAAAGAATTGAATATTAATTGATCAAATCATTCACTCCAGTGTCGGATAGATCTTTTGAAGACCTGATTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATATTGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAAGCCCGTTTGACTCCCTAATTATTTATTCTCTCTGTTCGTTAACGATTCAAAATTCGTTATCTTTCTCATTCATTTTACTCTTTCACAAACAAATGGATCCAGGCGGAAATTTTTTTTTCTTATTCTTACTACAAGTCTTGTGATAGATATGATACACGTACAAATGAACATCTTTGAGCAAGGAATCCCCATTTGAATGATTAACAATC----------CTCGTACTGAAACTTACAAAGGCCTCTTTTT--GATTTTTGAAGATCAAAAAAATTTCAG-GCCTGGTAC-TACTTTGTAATACTTTATTTTCGTCTTTTTAATT-GACTTTAATTGACATAGATCCAAGTCATCTAGTAAAATGAGGATGATACGTC
		Spiraeanthemum_macgillivrayi            CTTTCAA-TTCAGAGAAACCCTGGAATGAAAAATGGGCAATCCTGAGCCAAATCCTGTTTTCCGAAAACAAA-CAAAGGTTCCGAAAGCGAGAA------TAAAAAAAA-GGGATAGGTGCAGAGACTCAACGGAAGCTGTTCTAACACTAACAAATGGAGTTGACTGCGTTGCGTTAGTAAAGGAATCCTTCCGTCAAAACTCCAGAAAGGATAAAGTGATAAAGTAAAGGATAAA--------------CTCATATACATACGTATACGTACTGAAATACTATTTCAAATGATTAATGATGACCCGACTCCGTATTTTTTATAAAAATAA------------TGAAAGGTTTGTTGTAAATTGATTCCAAGTTGAAGAAAGAATTGAATATTAATTGATCAAATCATTCACTCCAGTGTCGGATAGATCTTTTGAAGACCTGATTAATCGGACGAGAATAAAGATAGAGTCCCATTCTACATGTCAATATTGACAACAATGAAATTTATAGTAAGAGGAAAATCCGTCGACTTTAGAAATCGTGAGGGTTCAAGTCCCTCTATCCCCAAAAAAGCCCGTTTGACTCCCTAATTATTTATTCTCTCTGTTCGTTAACGATTCAAAATTCGTTATCTTTCTCATTCATTTTACTCTTTCACAAACAAATGTATCCAGGCGGAAATTTTTTTTTCTTATTCTTACTACAAGTCTTGTGATAGATATGATACACGTACAAATGAACATCTTTGGGCAAGGAATCCCCATTTGAATGATTAACAATCCATATCATTACTCGTACTGAAACTTACAAAGTCCTCTTTTT--GATTTTTGAAGATCCAAAAAATTTCAG-GCCTGGTAC-TACTTTGTAATACTTTTTTT-CGTCTTTTTAATT-GACTTTAATTGACATAGACCCAAGTCATCTAGTAAAATGAGGATGATACGTC
		Spiraeanthemum_samoense                 CTTTCAAATTCAGAGAAACCCTGGAATGAAAAATGGGCAATCCTGAGCCAAATCCTGTTTTCCGAAAACAAA-CAAAGGTTCCGAAAGCGAGAA------TAAAAAAAAA-GGATAGGTGCAGAGACTCAACGGAAGCTGTTCTAACACTAACAAATGGAGTTGACTGCGTTGCGTTAGTAAAGGAATCCTTCCGTCAAAACTCCAGAAAGGATAAAGTGATAAAGTAAAGGATAAA--------------CCCATATNNNNNNGTA--CGTACTGAAATACTATTTCAAATKATTAATGATKACCCGACNC-GTATTTTTTATAAAAATAA------------TGAAAGGTTTGTTGTAAATTGATTCCAAGTTGAAGAAAGAATTGAATATTAATTGATCAAATCATTCACTCCAGTGTCGGATAGATCTTTTGAAGACCTGATTAATCGGATGAGAATAAAGATAGAGTCCCATTCTACATGTCAATATTGACAACAAT????????????????????????????????????????????????????????????????????????????????????????????????????????????TCGTTAACGATTCAAAATTCGTTATCTTTCACATTCATTT-ACTCTTTCACAAACAAATGTATCCAGGCGGAAATTTTTTTTTCTTATTCTTATTACAAGTCTTGTGATAGATATGATACACGTACAAATGAACATCTTTGGGCAAGGAATCCCCATTTGAATGATTAACAATCCATATCATTACTCGTACTGAAACTTACAAAGTCCTCTTTTT--GATTTTTGAAGATCCAAAAAATTTCAG-GCCTGGTAC-TACTTTGTAATACTTTTTTT-CGT-TTTTTAATTCGACTTTAATTGACATAGACCCAAGTCATCTAATAAAATGAGGATGATAC???
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 952 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;