#NEXUS [written Tue May 17 18:04:13 BRT 2016 by Mesquite version 3.04 (build 725) at Gustavo-PC/192.168.1.103] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=20; TAXLABELS Acidovorax_citrulli_AAC_213_53 Acidovorax_citrulli_AC_50 Acidovorax_citrulli_AC_05 Acidovorax_citrulli_AAC_213_52 Acidovorax_citrulli_AAC_213_61 Acidovorax_citrulli_AAC_213_60 Acidovorax_citrulli_AAC_213_59 Acidovorax_citrulli_AAC_213_54 Acidovorax_citrulli_AAC_213_55 Acidovorax_citrulli_AAC_213_58 Acidovorax_citrulli_AAC_213_50 Acidovorax_citrulli_AAC_213_51 Acidovorax_citrulli_AAC_213_41 Acidovorax_citrulli_AAC_213_49 Acidovorax_citrulli_AAC_213_47 Acidovorax_citrulli_AAC_213_46 Acidovorax_citrulli_AAC_213_45 Acidovorax_citrulli_AAC_213_44 Acidovorax_citrulli_AAC_213_48 Acidovorax_citrulli_AAC_213_42 ; END; BEGIN CHARACTERS; TITLE Matrix_luxR.nex; DIMENSIONS NCHAR=644; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Acidovorax_citrulli_AAC_213_53 TTTGAACAGGCGGTGCTTCTGCTGGGCTACCAGCACTTCTCGCTGTGCTACGTGCAACTGCGCCAGGACGGATCCGGCACGTCGCAGCCACCGATCGGGGTGTTGTCGCACAATTACCCGTCGCGTTGGGTATCTCATTACATCGCGCGGAACTATTACCTCGAAGACCCCGTTCGCCGGCATGCGCCCCAGGCCATGTCGCCCTATCGCTGGAAAGACGTTTCGGCACAGGGCGACCGGGAAGCGCACATCATGGACGAGGCGACCGACGCCGGGCTCGCAGACGGTTTGGGCCTGCCGATCCACGAACCCGGCGGCAGGATTTTTCTGGCGACCGTGGCGTCCCATCAGCAATTGACGCTCGGCAATGACGCATGCGTCAGGGCGTACGCATTGGTCACCGCGTTCCATGCGCTCTACACCATGCGGTTCGCCACGGAGCAGACGCAAATACCCACCGCGGTGAAGCTGACGTCCAGAGAGGCCGAATGCCTCACGTGGGTGGCCTACGGCAAGTCGTCCAGGGAGATCGGCCGGATCATGCGCATCTCCGAACATACGGTGAATTTCCATCTCAAGAATGCCATGGCCAAGTTCGACACCGCCAGCCGGGTGACGGCGGCTGTGCGCGCAGCCAACCTGGG Acidovorax_citrulli_AC_50 TTTGAACAGGCGGTGCTTCTGCTGGGCTACCAGCACTTCTCGCTGTGCTACGTGCAACTGCGCCAGGACGGATCCGGCACGTCGCAGCCACCGATCGGGGTGTTGTCGCACAATTACCCGTCGCGTTGGGTATCTCATTACATCGCGCGGAACTATTACCTCGAAGACCCCGTTCGCCGGCATGCGCCCCAGGCCATGTCGCCCTATCGCTGGAAAGACGTTTCGGCACAGGGCGACCGGGAAGCGCACATCATGGACGAGGCGACCGACGCCGGGCTCGCAGACGGTTTGGGCCTGCCGATCCACGAACCCGGCGGCAGGATTTTTCTGGCGACCGTGGCGTCCCATCAGCAATTGACGCTCGGCAATGACGCATGCGTCAGGGCGTACGCATTGGTCACCGCGTTCCATGCGCTCTACACCATGCGGTTCGCCACGGAGCAGACGCAAATACCCACCGCGGTGAAGCTGACGTCCAGAGAGGCCGAATGCCTCACGTGGGTGGCCTACGGCAAGTCGTCCAGGGAGATCGGCCGGATCATGCGCATCTCCGAACATACGGTGAATTTCCATCTCAAGAATGCCATGGCCAAGTTCGACACCGCCAGCCGGGTGACGGCGGCTGTGCGCGCAGCCAACCTGGG Acidovorax_citrulli_AC_05 TTTGAACAGGCGGTGCTTCTGCTGGGCTACCAGCACTTCTCGCTGTGCTACGTGCAACTGCGCCAGGACGGATCCGGCACGTCGCAGCCACCGATCGGGGTGTTGTCGCACAATTACCCGTCGCGTTGGGTATCTCATTACATCGCGCGGAACTATTACCTCGAAGACCCCGTTCGCCGGCATGCGCCCCAGGCCATGTCGCCCTATCGCTGGAAAGACGTTTCGGCACAGGGCGACCGGGAAGCGCACATCATGGACGAGGCGACCGACGCCGGGCTCGCAGACGGTTTGGGCCTGCCGATCCACGAACCCGGCGGCAGGATTTTTCTGGCGACCGTGGCGTCCCATCAGCAATTGACGCTCGGCAATGACGCATGCGTCAGGGCGTACGCATTGGTCACCGCGTTCCATGCGCTCTACACCATGCGGTTCGCCACGGAGCAGACGCAAATACCCACCGCGGTGAAGCTGACGTCCAGAGAGGCCGAATGCCTCACGTGGGTGGCCTACGGCAAGTCGTCCAGGGAGATCGGCCGGATCATGCGCATCTCCGAACATACGGTGAATTTCCATCTCAAGAATGCCATGGCCAAGTTCGACACCGCCAGCCGGGTGACGGCGGCTGTGCGCGCAGCCAACCTGGG Acidovorax_citrulli_AAC_213_52 TTTGAACAGGCGGTGCTTCTGCTGGGCTACCAGCACTTCTCGCTGTGCTACGTGCAACTGCGCCAGGACGGATCCGGCACGTCGCAGCCACCGATCGGGGTGTTGTCGCACAATTACCCGTCGCGTTGGGTATCTCATTACATCGCGCGGAACTATTACCTCGAAGACCCCGTTCGCCGGCATGCGCCCCAGGCCATGTCGCCCTATCGCTGGAAAGACGTTTCGGCACAGGGCGACCGGGAAGCGCACATCATGGACGAGGCGACCGACGCCGGGCTCGCAGACGGTTTGGGCCTGCCGATCCACGAACCCGGCGGCAGGATTTTTCTGGCGACCGTGGCGTCCCATCAGCAATTGACGCTCGGCAATGACGCATGCGTCAGGGCGTACGCATTGGTCACCGCGTTCCATGCGCTCTACACCATGCGGTTCGCCACGGAGCAGACGCAAATACCCACCGCGGTGAAGCTGACGTCCAGAGAGGCCGAATGCCTCACGTGGGTGGCCTACGGCAAGTCGTCCAGGGAGATCGGCCGGATCATGCGCATCTCCGAACATACGGTGAATTTCCATCTCAAGAATGCCATGGCCAAGTTCGACACCGCCAGCCGGGTGACGGCGGCTGTGCGCGCAGCCAACCTGGG Acidovorax_citrulli_AAC_213_61 TTTGAACAGGCGGTGCTTCTGCTGGGCTACCAGCACTTCTCGCTGTGCTACGTGCAACTGCGCCAGGACGGATCCGGCACGTCGCAGCCACCGATCGGGGTGTTGTCGCACAATTACCCGTCGCGTTGGGTATCTCATTACATCGCGCGGAACTATTACCTCGAAGACCCCGTTCGCCGGCATGCGCCCCAGGCCATGTCGCCCTATCGCTGGAAAGACGTTTCGGCACAGGGCGACCGGGAAGCGCACATCATGGACGAGGCGACCGACGCCGGGCTCGCAGACGGTTTGGGCCTGCCGATCCACGAACCCGGCGGCAGGATTTTTCTGGCGACCGTGGCGTCCCATCAGCAATTGACGCTCGGCAATGACGCATGCGTCAGGGCGTACGCATTGGTCACCGCGTTCCATGCGCTCTACACCATGCGGTTCGCCACGGAGCAGACGCAAATACCCACCGCGGTGAAGCTGACGTCCAGAGAGGCCGAATGCCTCACGTGGGTGGCCTACGGCAAGTCGTCCAGGGAGATCGGCCGGATCATGCGCATCTCCGAACATACGGTGAATTTCCATCTCAAGAATGCCATGGCCAAGTTCGACACCGCCAGCCGGGTGACGGCGGCTGTGCGCGCAGCCAACCTGGG Acidovorax_citrulli_AAC_213_60 TTTGAACAGGCGGTGCTTCTGCTGGGCTACCAGCACTTCTCGCTGTGCTACGTGCAACTGCGCCAGGACGGATCCGGCACGTCGCAGCCACCGATCGGGGTGTTGTCGCACAATTACCCGTCGCGTTGGGTATCTCATTACATCGCGCGGAACTATTACCTCGAAGACCCCGTTCGCCGGCATGCGCCCCAGGCCATGTCGCCCTATCGCTGGAAAGACGTTTCGGCACAGGGCGACCGGGAAGCGCACATCATGGACGAGGCGACCGACGCCGGGCTCGCAGACGGTTTGGGCCTGCCGATCCACGAACCCGGCGGCAGGATTTTTCTGGCGACCGTGGCGTCCCATCAGCAATTGACGCTCGGCAATGACGCATGCGTCAGGGCGTACGCATTGGTCACCGCGTTCCATGCGCTCTACACCATGCGGTTCGCCACGGAGCAGACGCAAATACCCACCGCGGTGAAGCTGACGTCCAGAGAGGCCGAATGCCTCACGTGGGTGGCCTACGGCAAGTCGTCCAGGGAGATCGGCCGGATCATGCGCATCTCCGAACATACGGTGAATTTCCATCTCAAGAATGCCATGGCCAAGTTCGACACCGCCAGCCGGGTGACGGCGGCTGTGCGCGCAGCCAACCTGGG Acidovorax_citrulli_AAC_213_59 TTTGAACAGGCGGTGCTTCTGCTGGGCTACCAGCACTTCTCGCTGTGCTACGTGCAACTGCGCCAGGACGGATCCGGCACGTCGCAGCCACCGATCGGGGTGTTGTCGCACAATTACCCGTCGCGTTGGGTATCTCATTACATCGCGCGGAACTATTACCTCGAAGACCCCGTTCGCCGGCATGCGCCCCAGGCCATGTCGCCCTATCGCTGGAAAGACGTTTCGGCACAGGGCGACCGGGAAGCGCACATCATGGACGAGGCGACCGACGCCGGGCTCGCAGACGGTTTGGGCCTGCCGATCCACGAACCCGGCGGCAGGATTTTTCTGGCGACCGTGGCGTCCCATCAGCAATTGACGCTCGGCAATGACGCATGCGTCAGGGCGTACGCATTGGTCACCGCGTTCCATGCGCTCTACACCATGCGGTTCGCCACGGAGCAGACGCAAATACCCACCGCGGTGAAGCTGACGTCCAGAGAGGCCGAATGCCTCACGTGGGTGGCCTACGGCAAGTCGTCCAGGGAGATCGGCCGGATCATGCGCATCTCCGAACATACGGTGAATTTCCATCTCAAGAATGCCATGGCCAAGTTCGACACCGCCAGCCGGGTGACGGCGGCTGTGCGCGCAGCCAACCTGGG Acidovorax_citrulli_AAC_213_54 TTTGAACAGGCGGTGCTTCTGCTGGGCTACCAGCACTTCTCGCTGTGCTACGTGCAACTGCGCCAGGACGGATCCGGCACGTCGCAGCCACCGATCGGGGTGTTGTCGCACAATTACCCGTCGCGTTGGGTATCTCATTACATCGCGCGGAACTATTACCTCGAAGACCCCGTTCGCCGGCATGCGCCCCAGGCCATGTCGCCCTATCGCTGGAAAGACGTTTCGGCACAGGGCGACCGGGAAGCGCACATCATGGACGAGGCGACCGACGCCGGGCTCGCAGACGGTTTGGGCCTGCCGATCCACGAACCCGGCGGCAGGATTTTTCTGGCGACCGTGGCGTCCCATCAGCAATTGACGCTCGGCAATGACGCATGCGTCAGGGCGTACGCATTGGTCACCGCGTTCCATGCGCTCTACACCATGCGGTTCGCCACGGAGCAGACGCAAATACCCACCGCGGTGAAGCTGACGTCCAGAGAGGCCGAATGCCTCACGTGGGTGGCCTACGGCAAGTCGTCCAGGGAGATCGGCCGGATCATGCGCATCTCCGAACATACGGTGAATTTCCATCTCAAGAATGCCATGGCCAAGTTCGACACCGCCAGCCGGGTGACGGCGGCTGTGCGCGCAGCCAACCTGGG Acidovorax_citrulli_AAC_213_55 TTTGAACAGGCGGTGCTTCTGCTGGGCTACCAGCACTTCTCGCTGTGCTACGTGCAACTGCGCCAGGACGGATCCGGCACGTCGCAGCCACCGATCGGGGTGTTGTCGCACAATTACCCGTCGCGTTGGGTATCTCATTACATCGCGCGGAACTATTACCTCGAAGACCCCGTTCGCCGGCATGCGCCCCAGGCCATGTCGCCCTATCGCTGGAAAGACGTTTCGGCACAGGGCGACCGGGAAGCGCACATCATGGACGAGGCGACCGACGCCGGGCTCGCAGACGGTTTGGGCCTGCCGATCCACGAACCCGGCGGCAGGATTTTTCTGGCGACCGTGGCGTCCCATCAGCAATTGACGCTCGGCAATGACGCATGCGTCAGGGCGTACGCATTGGTCACCGCGTTCCATGCGCTCTACACCATGCGGTTCGCCACGGAGCAGACGCAAATACCCACCGCGGTGAAGCTGACGTCCAGAGAGGCCGAATGCCTCACGTGGGTGGCCTACGGCAAGTCGTCCAGGGAGATCGGCCGGATCATGCGCATCTCCGAACATACGGTGAATTTCCATCTCAAGAATGCCATGGCCAAGTTCGACACCGCCAGCCGGGTGACGGCGGCTGTGCGCGCAGCCAACCTGGG Acidovorax_citrulli_AAC_213_58 TTTGAACAGGCGGTGCTTCTGCTGGGCTACCAGCACTTCTCGCTGTGCTACGTGCAACTGCGCCAGGACGGATCCGGCACGTCGCAGCCACCGATCGGGGTGTTGTCGCACAATTACCCGTCGCGTTGGGTATCTCATTACATCGCGCGGAACTATTACCTCGAAGACCCCGTTCGCCGGCATGCGCCCCAGGCCATGTCGCCCTATCGCTGGAAAGACGTTTCGGCACAGGGCGACCGGGAAGCGCACATCATGGACGAGGCGACCGACGCCGGGCTCGCAGACGGTTTGGGCCTGCCGATCCACGAACCCGGCGGCAGGATTTTTCTGGCGACCGTGGCGTCCCATCAGCAATTGACGCTCGGCAATGACGCATGCGTCAGGGCGTACGCATTGGTCACCGCGTTCCATGCGCTCTACACCATGCGGTTCGCCACGGAGCAGACGCAAATACCCACCGCGGTGAAGCTGACGTCCAGAGAGGCCGAATGCCTCACGTGGGTGGCCTACGGCAAGTCGTCCAGGGAGATCGGCCGGATCATGCGCATCTCCGAACATACGGTGAATTTCCATCTCAAGAATGCCATGGCCAAGTTCGACACCGCCAGCCGGGTGACGGCGGCTGTGCGCGCAGCCAACCTGGG Acidovorax_citrulli_AAC_213_50 TTTGAACAGGCGGTGCTTCTGCTGGGCTACCAGCACTTCTCGCTGTGCTACGTGCAACTGCGCCAGGACGGATCCGGCACGTCGCAGCCACCGATCGGGGTGTTGTCGCACAATTACCCGTCGCGTTGGGTATCTCATTACATCGCGCGGAACTATTACCTCGAAGACCCCGTTCGCCGGCATGCGCCCCAGGCCATGTCGCCCTATCGCTGGAAAGACGTTTCGGCACAGGGCGACCGGGAAGCGCACATCATGGACGAGGCGACCGACGCCGGGCTCGCAGACGGTTTGGGCCTGCCGATCCACGAACCCGGCGGCAGGATTTTTCTGGCGACCGTGGCGTCCCATCAGCAATTGACGCTCGGCAATGACGCATGCGTCAGGGCGTACGCATTGGTCACCGCGTTCCATGCGCTCTACACCATGCGGTTCGCCACGGAGCAGACGCAAATACCCACCGCGGTGAAGCTGACGTCCAGAGAGGCCGAATGCCTCACGTGGGTGGCCTACGGCAAGTCGTCCTGGGAGATCGGCCGGATCATGCGCATCTCCGAACATACGGTGAATTTCCATCTCAAGAATGCCATGGCCAAGTTCGACACCGCCAGCCGGGTGACGGCGGCTGTGCGCGCAGCCAACCTGGG Acidovorax_citrulli_AAC_213_51 TTTGAACAGGCGGTGCTTCTGCTGGGCTACCAGCACTTCTCGCTGTGCTACGTGCAACTGCGCCAGGACGGATCCGGCACGTCGCAGCCACCGATCGGGGTGTTGTCGCACAATTACCCGTCGCGTTGGGTATCTCATTACATCGCGCGGAACTATTACCTCGAAGACCCCGTTCGCCGGCATGCGCCCCAGGCCATGTCGCCCTATCGCTGGAAAGACGTTTCGGCACAGGGCGACCGGGAAGCGCACATCATGGACGAGGCGACCGACGCCGGGCTCGCAGACGGTTTGGGCCTGCCGATCCACGAACCCGGCGGCAGGATTTTTCTGGCGACCGTGGCGTCCCATCAGCAATTGACGCTCGGCAATGACGCATGCGTCAGGGCGTACGCATTGGTCACCGCGTTCCATGCGCTCTACACCATGCGGTTCGCCACGGAGCAGACGCAAATACCCACCGCGGTGAAGCTGACGTCCAGAGAGGCCGAATGCCTCACGTGGGTGGCCTACGGCAAGTCGTCCTGGGAGATCGGCCGGATCATGCGCATCTCCGAACATACGGTGAATTTCCATCTCAAGAATGCCATGGCCAAGTTCGACACCGCCAGCCGGGTGACGGCGGCTGTGCGCGCAGCCAACCTGGG Acidovorax_citrulli_AAC_213_41 TTTGAACAGGCGGTGCTTCTGCTGGGCTACCAGCACTTCTCGCTGTGCTACGTGCAACTGCGCCAGGACGGATCCGGCACGTCGCAGCCACCGATCGGGGTGTTGTCGCACAATTACCCGTCGCGTTGGGTATCTCATTACATTGCGCGGAACTATTACCTCGAAGACCCCGTTCGCCGGCATGCGCCCCAGGCCATGTCGCCCTATCGCTGGAAAGACGTTTCGGCACAGGGCGACCGGGAAGCGCACATCATGGACGAGGCGACCGACGCCGGGCTCGCAGACGGTTTGGGCCTGCCGATCCACGAACCCGGCGGCAGGATTTTTCTGGCGACCGTGGCGTCCCATCAGCAATTGACGCTCGGCAATGACGCATGCGTCAGGACGTACGCATTGGTCACCGCGTTCCATGCGCTCTACACCATGCGGTTCGCCACGGAGCAGACGCAAATACCCACCGCGGTGAAGCTGACGTCCAGAGAGGCCGAATGCCTCACGTGGGTGGCCTACGGCAAGTCGTCCTGGGAGATCGGCCGGATCATGCGCATCTCCGAACATACGGTGAATTTCCATCTCAAGAATGCCATGGCCAAGTTCGACACCGCCAGCCGGGTGACGGCGGCTGTGCGCGCAGCCAACCTGGG Acidovorax_citrulli_AAC_213_49 TTTGAACAGGCGGTGCTTCTGCTGGGCTACCAGCACTTCTCGCTGTGCTACGTGCAACTGCGCCAGGACGGATCCGGCACGTCGCAGCCACCGATCGGGGTGTTGTCGCACAATTACCCGTCGCGTTGGGTATCTCATTACATTGCGCGGAACTATTACCTCGAAGACCCCGTTCGCCGGCATGCGCCCCAGGCCATGTCGCCCTATCGCTGGAAAGACGTTTCGGCACAGGGCGACCGGGAAGCGCACATCATGGACGAGGCGACCGACGCCGGGCTCGCAGACGGTTTGGGCCTGCCGATCCACGAACCCGGCGGCAGGATTTTTCTGGCGACCGTGGCGTCCCATCAGCAATTGACGCTCGGCAATGACGCATGCGTCAGGACGTACGCATTGGTCACCGCGTTCCATGCGCTCTACACCATGCGGTTCGCCACGGAGCAGACGCAAATACCCACCGCGGTGAAGCTGACGTCCAGAGAGGCCGAATGCCTCACGTGGGTGGCCTACGGCAAGTCGTCCTGGGAGATCGGCCGGATCATGCGCATCTCCGAACATACGGTGAATTTCCATCTCAAGAATGCCATGGCCAAGTTCGACACCGCCAGCCGGGTGACGGCGGCTGTGCGCGCAGCCAACCTGGG Acidovorax_citrulli_AAC_213_47 TTTGAACAGGCGGTGCTTCTGCTGGGCTACCAGCACTTCTCGCTGTGCTACGTGCAACTGCGCCAGGACGGATCCGGCACGTCGCAGCCACCGATCGGGGTGTTGTCGCACAATTACCCGTCGCGTTGGGTATCTCATTACATTGCGCGGAACTATTACCTCGAAGACCCCGTTCGCCGGCATGCGCCCCAGGCCATGTCGCCCTATCGCTGGAAAGACGTTTCGGCACAGGGCGACCGGGAAGCGCACATCATGGACGAGGCGACCGACGCCGGGCTCGCAGACGGTTTGGGCCTGCCGATCCACGAACCCGGCGGCAGGATTTTTCTGGCGACCGTGGCGTCCCATCAGCAATTGACGCTCGGCAATGACGCATGCGTCAGGACGTACGCATTGGTCACCGCGTTCCATGCGCTCTACACCATGCGGTTCGCCACGGAGCAGACGCAAATACCCACCGCGGTGAAGCTGACGTCCAGAGAGGCCGAATGCCTCACGTGGGTGGCCTACGGCAAGTCGTCCTGGGAGATCGGCCGGATCATGCGCATCTCCGAACATACGGTGAATTTCCATCTCAAGAATGCCATGGCCAAGTTCGACACCGCCAGCCGGGTGACGGCGGCTGTGCGCGCAGCCAACCTGGG Acidovorax_citrulli_AAC_213_46 TTTGAACAGGCGGTGCTTCTGCTGGGCTACCAGCACTTCTCGCTGTGCTACGTGCAACTGCGCCAGGACGGATCCGGCACGTCGCAGCCACCGATCGGGGTGTTGTCGCACAATTACCCGTCGCGTTGGGTATCTCATTACATTGCGCGGAACTATTACCTCGAAGACCCCGTTCGCCGGCATGCGCCCCAGGCCATGTCGCCCTATCGCTGGAAAGACGTTTCGGCACAGGGCGACCGGGAAGCGCACATCATGGACGAGGCGACCGACGCCGGGCTCGCAGACGGTTTGGGCCTGCCGATCCACGAACCCGGCGGCAGGATTTTTCTGGCGACCGTGGCGTCCCATCAGCAATTGACGCTCGGCAATGACGCATGCGTCAGGACGTACGCATTGGTCACCGCGTTCCATGCGCTCTACACCATGCGGTTCGCCACGGAGCAGACGCAAATACCCACCGCGGTGAAGCTGACGTCCAGAGAGGCCGAATGCCTCACGTGGGTGGCCTACGGCAAGTCGTCCTGGGAGATCGGCCGGATCATGCGCATCTCCGAACATACGGTGAATTTCCATCTCAAGAATGCCATGGCCAAGTTCGACACCGCCAGCCGGGTGACGGCGGCTGTGCGCGCAGCCAACCTGGG Acidovorax_citrulli_AAC_213_45 TTTGAACAGGCGGTGCTTCTGCTGGGCTACCAGCACTTCTCGCTGTGCTACGTGCAACTGCGCCAGGACGGATCCGGCACGTCGCAGCCACCGATCGGGGTGTTGTCGCACAATTACCCGTCGCGTTGGGTATCTCATTACATTGCGCGGAACTATTACCTCGAAGACCCCGTTCGCCGGCATGCGCCCCAGGCCATGTCGCCCTATCGCTGGAAAGACGTTTCGGCACAGGGCGACCGGGAAGCGCACATCATGGACGAGGCGACCGACGCCGGGCTCGCAGACGGTTTGGGCCTGCCGATCCACGAACCCGGCGGCAGGATTTTTCTGGCGACCGTGGCGTCCCATCAGCAATTGACGCTCGGCAATGACGCATGCGTCAGGACGTACGCATTGGTCACCGCGTTCCATGCGCTCTACACCATGCGGTTCGCCACGGAGCAGACGCAAATACCCACCGCGGTGAAGCTGACGTCCAGAGAGGCCGAATGCCTCACGTGGGTGGCCTACGGCAAGTCGTCCTGGGAGATCGGCCGGATCATGCGCATCTCCGAACATACGGTGAATTTCCATCTCAAGAATGCCATGGCCAAGTTCGACACCGCCAGCCGGGTGACGGCGGCTGTGCGCGCAGCCAACCTGGG Acidovorax_citrulli_AAC_213_44 TTTGAACAGGCGGTGCTTCTGCTGGGCTACCAGCACTTCTCGCTGTGCTACGTGCAACTGCGCCAGGACGGATCCGGCACGTCGCAGCCACCGATCGGGGTGTTGTCGCACAATTACCCGTCGCGTTGGGTATCTCATTACATTGCGCGGAACTATTACCTCGAAGACCCCGTTCGCCGGCATGCGCCCCAGGCCATGTCGCCCTATCGCTGGAAAGACGTTTCGGCACAGGGCGACCGGGAAGCGCACATCATGGACGAGGCGACCGACGCCGGGCTCGCAGACGGTTTGGGCCTGCCGATCCACGAACCCGGCGGCAGGATTTTTCTGGCGACCGTGGCGTCCCATCAGCAATTGACGCTCGGCAATGACGCATGCGTCAGGACGTACGCATTGGTCACCGCGTTCCATGCGCTCTACACCATGCGGTTCGCCACGGAGCAGACGCAAATACCCACCGCGGTGAAGCTGACGTCCAGAGAGGCCGAATGCCTCACGTGGGTGGCCTACGGCAAGTCGTCCTGGGAGATCGGCCGGATCATGCGCATCTCCGAACATACGGTGAATTTCCATCTCAAGAATGCCATGGCCAAGTTCGACACCGCCAGCCGGGTGACGGCGGCTGTGCGCGCAGCCAACCTGGG Acidovorax_citrulli_AAC_213_48 TTTGAACAGGCGGTGCTTCTGCTGGGCTACCAGCACTTCTCGCTGTGCTACGTGCAACTGCGCCAGGACGGATCCGGCACGTCGCAGCCACCGATCGGGGTGTTGTCGCACAATTACCCGTCGCGTTGGGTATCTCATTACATTGCGCGGAACTATTACCTCGAAGACCCCGTTCGCCGGCATGCGCCCCAGGCCATGTCGCCCTATCGCTGGAAAGACGTTTCGGCACAGGGCGACCGGGAAGCGCACATCATGGACGAGGCGACCGACGCCGGGCTCGCAGACGGTTTGGGCCTGCCGATCCACGAACCCGGCGGCAGGATTTTTCTGGCGACCGTGGCGTCCCATCAGCAATTGACGCTCGGCAATGACGCATGCGTCAGGACGTACGCATTGGTCACCGCGTTCCATGCGCTCTACACCATGCGGTTCGCCACGGAGCAGACGCAAATACCCACCGCGGTGAAGCTGACGTCCAGAGAGGCCGAATGCCTCACGTGGGTGGCCTACGGCAAGTCGTCCTGGGAGATCGGCCGGATCATGCGCATCTCCGAACATACGGTGAATTTCCATCTCAAGAATGCCATGGCCAAGTTCGACACCGCCAGCCGGGTGACGGCGGCTGTGCGCGCAGCCAACCTGGG Acidovorax_citrulli_AAC_213_42 TTTGAACAGGCGGTGCTTCTGCTGGGCTACCAGCACTTCTCGCTGTGCTACGTGCAACTGCGCCAGGACGGATCCGGCACGTCGCAGCCACCGATCGGGGTGTTGTCGCACAATTACCCGTCGCGTTGGGTATCTCATTACATTGCGCGGAACTATTACCTCGAAGACCCCGTTCGCCGGCATGCGCCCCAGGCCATGTCGCCCTATCGCTGGAAAGACGTTTCGGCACAGGGCGACCGGGAAGCGCACATCATGGACGAGGCGACCGACGCCGGGCTCGCAGACGGTTTGGGCCTGCCGATCCACGAACCCGGCGGCAGGATTTTTCTGGCGACCGTGGCGTCCCATCAGCAATTGACGCTCGGCAATGACGCATGCGTCAGGACGTACGCATTGGTCACCGCGTTCCATGCGCTCTACACCATGCGGTTCGCCACGGAGCAGACGCAAATACCCACCGCGGTGAAGCTGACGTCCAGAGAGGCCGAATGCCTCACGTGGGTGGCCTACGGCAAGTCGTCCTGGGAGATCGGCCGGATCATGCGCATCTCCGAACATACGGTGAATTTCCATCTCAAGAATGCCATGGCCAAGTTCGACACCGCCAGCCGGGTGACGGCGGCTGTGCGCGCAGCCAACCTGGG ; END; BEGIN TREES; Title Tree_luxR.nex; LINK Taxa = Taxa; TRANSLATE [0] n0 Acidovorax_citrulli_AAC_213_53, [1] n1 Acidovorax_citrulli_AC_50, [2] n2 Acidovorax_citrulli_AC_05, [3] n3 Acidovorax_citrulli_AAC_213_52, [4] n4 Acidovorax_citrulli_AAC_213_61, [5] n5 Acidovorax_citrulli_AAC_213_60, [6] n6 Acidovorax_citrulli_AAC_213_59, [7] n7 Acidovorax_citrulli_AAC_213_54, [8] n8 Acidovorax_citrulli_AAC_213_55, [9] n9 Acidovorax_citrulli_AAC_213_58, [10] n10 Acidovorax_citrulli_AAC_213_50, [11] n11 Acidovorax_citrulli_AAC_213_51, [12] n12 Acidovorax_citrulli_AAC_213_41, [13] n13 Acidovorax_citrulli_AAC_213_49, [14] n14 Acidovorax_citrulli_AAC_213_47, [15] n15 Acidovorax_citrulli_AAC_213_46, [16] n16 Acidovorax_citrulli_AAC_213_45, [17] n17 Acidovorax_citrulli_AAC_213_44, [18] n18 Acidovorax_citrulli_AAC_213_48, [19] n19 Acidovorax_citrulli_AAC_213_42; TREE 'tree 1+' = ((((((((((((n0:0.0,n1:0.0):0.0,n2:0.0):0.0,n3:0.0):0.0,n4:0.0):0.0,n5:0.0):0.0,n6:0.0):0.0,n7:0.0):0.0,n8:0.0):0.0,n9:0.0):1,n10:0.0):0.0,n11:0.0):0.5,(n12:0.0,(n13:0.0,(n14:0.0,(n15:0.0,(n16:0.0,(n17:0.0,(n18:0.0,n19:0.0):0.0):0.0):0.0):0.0):0.0):0.0):1.5); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = Matrix_luxR.nex) = unord: 1 - 644; END; BEGIN CODONS; CODESET * UNTITLED (CHARACTERS = Matrix_luxR.nex) = universal: 1 - 644; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = Matrix_luxR.nex) = 'Jukes-Cantor': 1 - 644; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1463519053419; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 3063064764650247490; tell It; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 7539610840363819818; mqVersion 304; checksumv 0 3 1928085389 null getNumChars 644 numChars 644 getNumTaxa 20 numTaxa 20 short true bits 15 states 15 sumSquaresStatesOnly 231490.0 sumSquares 231490.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 233; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 463; setLocation 8 9; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #3063064764650247490 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #3063064764650247490; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 467 391; setLocation 8 9; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #3063064764650247490 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 4533.1463518956414.4713327641301767681; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 467 391; setLocation 8 9; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientRight; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #7539610840363819818 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 467 391; setLocation 8 9; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;