#NEXUS [written Thu Nov 15 06:02:08 IST 2018 by Mesquite version 2.75 (build 564) at LAPTOP-V120PBBL/127.0.0.1] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=51; TAXLABELS Neoscytalidium_novaehollandiae_CBS_122071 Neoscytalidium_dimidiatum_PWQ2367 'Aureobasidium thailandense Ae-12' Aureobasidium_caulivorum_CBS_242.64 Aureobasidium_leucospermi_CPC_15180 'Aureobasidium pullulans NRRL Y-7703' Aureobasidium_thailandense_NRRL_58543 Phyllosticta_citrichinaensis_CBS_130529 Phyllosticta_cavendishii_CPC_18344 Phyllosticta_hymenocallidicola_CBS_131310 Guignardia_mangiferae_CBS_115313 Guignardia_mangiferae_CBS_115051 Phyllosticta_maculata_CPC_18347 Phyllosticta_vaccinii_ATCC_46255 Phyllosticta_yuccae_CBS_117136 'Guignardia mangiferae m110805-4-2' Phyllosticta_hymenocallidicola_CBS_131309 Lobaria_pulmonaria_L22 Ochrolechia_balcanica 'Phyllosticta hymenocallidicola Ae-03' 'Phyllosticta capitalensis Ae-11' 'Guignardia mangiferae Ae-26' 'Guignardia mangiferae Fi-10' 'Phyllosticta capitalensis Fi-13' 'Phyllosticta capitalensis Fi-16' Phyllosticta_capitalensis_CBS_119720 Phyllosticta_citrichinaensis_CBS_129764 Guignardia_mangiferae_GZAAS6_1357 'Neofusicoccum parvum Ps-03' 'Neofusicoccum parvum Ps-10' 'Neofusicoccum parvum Ps-17' Neofusicoccum_australe_CBS_115185 Neofusicoccum_corticosae_CPC_12926 Neofusicoccum_eucalypticola_CBS_115679 Botryosphaeria_lutea_CBS_121482 Neofusicoccum_mediterraneum_CPC_13137 Neofusicoccum_parvum_WTS_104 Botryosphaeria_parva_ATCC_58191 Botryosphaeria_parva_NRRL_46122 Neofusicoccum_protearum_CBS_115499 'Pseudofusicoccum adansoniae Ae-01' Pseudofusicoccum_ardesiacum_CBS_122062 Pseudofusicoccum_artocarpi_B0431 Pseudofusicoccum_adansoniae_B0441 Pseudofusicoccum_kimberleyense_CBS_122058 Pseudofusicoccum_olivaceum_WTS_58 Pseudofusicoccum_stromaticum_CBS_117448 'Pseudofusicoccum adansoniae MFLUCC14-0517' 'Neoscytalidium dimidiatum Ae-27' Neoscytalidium_dimidiatum_CBS_251.49 Scytalidium_hyalinum_CBS_145.78 ; END; BEGIN CHARACTERS; TITLE 'Botryosphaeriales and Dothideales_Character Matrix (Single letter code of ITS2 sequence-secondary structure)'; DIMENSIONS NCHAR=268; FORMAT DATATYPE = Protein INTERLEAVE GAP = - MISSING = ?; MATRIX Neoscytalidium_novaehollandiae_CBS_122071 LGCCLGLLCG-RGDGLCAIIACRRCD--C--I--CRRGC-IDIHQKKHHI Neoscytalidium_dimidiatum_PWQ2367 LGCCLGLLCG-RGDGLCAIIACRRCD--C--I--CRRGC-IDIHQKKHHI 'Aureobasidium thailandense Ae-12' -GCCLGLLCGARGDGLCRIIRCA--DDRC--I--CRRGC-ADIHQKKHHK Aureobasidium_caulivorum_CBS_242.64 LGCCLGLLCG-RGDGLCRII--A--D-RCCAD-LCRRGC-IAIHQKKHHI Aureobasidium_leucospermi_CPC_15180 LGCCLGLLCG-RGDGLCRII--A--D-RCCAD-LCRRGC-IAIHQKKHHI 'Aureobasidium pullulans NRRL Y-7703' LGCCLGLLCG-RGDGLCRII--A--D-RCCAD-LCRRGC-IAIHQKKHHI Aureobasidium_thailandense_NRRL_58543 LGCCLGLLCG-RGDGLCAIIADA--DDRC--I--CRRGC-ADIHQKKHHK Phyllosticta_citrichinaensis_CBS_130529 LGCCLGLLCG-RGDGLCRIIIDAR-C--C--D-LCRRGC-IDIHQKKHHI Phyllosticta_cavendishii_CPC_18344 LGCCLGLLCG-RGDGLCRIIIDR--C--C--DDLCRRGCIADIHQKKHHI Phyllosticta_hymenocallidicola_CBS_131310 LGCCLGLLCG-RGDGLCAIIIDAA-D--D--D-LCRRGC-IDIHQKKHHI Guignardia_mangiferae_CBS_115313 LGCCLGLLCG-RGDGLCALLLCRA-D--D--D-LCRRGC-IDIHQKKHHI Guignardia_mangiferae_CBS_115051 LGCCLGLLCG-RGDGLCALLLCRA-D--D--D-LCRRGC-IDIHQKKHHI Phyllosticta_maculata_CPC_18347 LGCCLGLLCG-RGDGLCRIIIDR--C--C--DDLCRRGCDADDHQKKHHI Phyllosticta_vaccinii_ATCC_46255 LGCCLGLLCG-RGDGLCALLLCAA-D--D--D-LCRRGC-IDIHQKKHHI Phyllosticta_yuccae_CBS_117136 LGCCLGLLCG-RGDGLCRIIIDAA-C--C--C-LCRRGC-EDIHQKKHHI 'Guignardia mangiferae m110805-4-2' LGCCLGLLCG-RGDGLCALLLCRA-D--D--D-LCRRGC-IDIHQKKHHI Phyllosticta_hymenocallidicola_CBS_131309 LGCCLGLLCG-RGDGLCAIIIDAA-D--D--D-LCRRGC-IDIHQKKHHI Lobaria_pulmonaria_L22 LRCCLGLLCG-RGDGLCRIIRCAD-D--D--D-LCRRGC-EIEHQKKHHI Ochrolechia_balcanica LGCDLGLLCG-RGDGLCAIIADAD-D--I--D-IDRRGC-IIEHQKKGGL 'Phyllosticta hymenocallidicola Ae-03' LGCCLGLLCG-RGDGLCAIIIDAA-D--D--D-LCRRGC-IDIHQKKHHI 'Phyllosticta capitalensis Ae-11' LGCCLGLLCG-RGDGLCALLLCRA-D--D--D-LCRRGC-IDIHQKKHHI 'Guignardia mangiferae Ae-26' LGCCLGLLCG-RGDGLCALLLCRA-D--D--D-LCRRGC-IDIHQKKHHI 'Guignardia mangiferae Fi-10' LGCCLGLLCG-RGDGLCALLLCRA-D--D--D-LCRRGC-IDIHQKKHHI 'Phyllosticta capitalensis Fi-13' LGCCLGLLCG-RGDGLCALLLCRA-D--D--D-LCRRGC-IDIHQKKHHI 'Phyllosticta capitalensis Fi-16' IECCLGLLCG-RGDGLCALLLCRA-D--D--D-LCRRGC-IDIHQKKHHI Phyllosticta_capitalensis_CBS_119720 LGCCLGLLCG-RGDGLCALLLCRA-D--D--D-LCRRGC-IDIHQKKHHI Phyllosticta_citrichinaensis_CBS_129764 LGCCLGLLCG-RGDGLCRIIIDAR-C--C--D-LCRRGC-IDIHQKKHHI Guignardia_mangiferae_GZAAS6_1357 LGCCLGLLCG-RGDGLCALLLCRA-D--D--D-LCRRGC-IDIHQKKHHI 'Neofusicoccum parvum Ps-03' LGCCLGLLCG-RGDGLCAIILCAA-D--D--D-LCRRGC-IDIHQKKHHI 'Neofusicoccum parvum Ps-10' LGCCLGLLCG-RGDGLCAIILCAA-D--D--D-LCRRGC-IDIHQKKHHI 'Neofusicoccum parvum Ps-17' LGCCLGLLCG-RGDGLCAIILCAA-D--D--D-LCRRGC-IDIHQKKHHI Neofusicoccum_australe_CBS_115185 LGCCLGLLCG-RGDGLCALLLCAA-D--D--D-LCRRGC-IDIHQKKHHI Neofusicoccum_corticosae_CPC_12926 LGCCLGLLCG-RGDGLCRILLCAA-D--D--D-LCRRGC-IDIHQKKHHI Neofusicoccum_eucalypticola_CBS_115679 LGCCLGLLCG-RGDGLCRILLCAA-D--D--D-LCRRGC-IDIHQKKHHI Botryosphaeria_lutea_CBS_121482 LGCCLGLLCG-RGDGLCALLLCAA-D--D--D-LCRRGC-IDIHQKKHHI Neofusicoccum_mediterraneum_CPC_13137 LGCCLGLLCG-RGDGLCALLLCAA-D--D--D-LCRRGC-IDIHQKKHHI Neofusicoccum_parvum_WTS_104 LGCCLGLLCG-RGDGLCAIILCAA-D--D--D-LCRRGC-IDIHQKKHHI Botryosphaeria_parva_ATCC_58191 LGCCLGLLCG-RGDGLCAIILCAA-D--D--D-LCRRGC-IDIHQKKHHI Botryosphaeria_parva_NRRL_46122 LGCCLGLLCG-RGDGLCAIILCAA-D--D--D-LCRRGC-IIIHQKKHHI Neofusicoccum_protearum_CBS_115499 LGCCLGLLCG-RGDGLCAIILCAA-D--D--D-LCRRGC-IDIHQKKHHI 'Pseudofusicoccum adansoniae Ae-01' LGCCLGLLCG-RGDGLCAIIRCRCCD--D--ID--RRGC-IDIHQKKHHK Pseudofusicoccum_ardesiacum_CBS_122062 LGCCLGLLCG-RGDGLCAIIADA--D--D--DDLCRRGC-IDIHQKKHHI Pseudofusicoccum_artocarpi_B0431 IEDDIEIIDG-RGDGLCAIDADA--D--D--DDLCRRGC-IDIHQKKHHI Pseudofusicoccum_adansoniae_B0441 IEDDIEIIDG-RGDGLCAIIRCRCCD--D--ID--RRGC-IDIHQKKHHK Pseudofusicoccum_kimberleyense_CBS_122058 LGCCLGLLCG-RGDGLCAIIADA--D--D--DDLCRRGC-IDIHQKKHHI Pseudofusicoccum_olivaceum_WTS_58 LGCCLGLLCG-RGDGLCAIIADA--D--D--DILCRRGC-IDIHQKKHHI Pseudofusicoccum_stromaticum_CBS_117448 LGCCLGLLCG-RGDGLCAIIRCRCCD--D--ID--RRGC-IDIHQKKHHK 'Pseudofusicoccum adansoniae MFLUCC14-0517' LGCCLGLLCG-RGDGLCAIIRCRCCD--D--ID--RRGC-IDIHQKKHHK 'Neoscytalidium dimidiatum Ae-27' LGCCLGLLCG-RGDGLCAIIACRRCD--C--I--CRRGC-IDIHQKKHHI Neoscytalidium_dimidiatum_CBS_251.49 LGCCLGLLCG-RGDGLCAIIACRRCD--C--I--CRRGC-IDIHQKKHHI Scytalidium_hyalinum_CBS_145.78 LGCCLGLLCG-RGDGLCAIIACRRCD--C--I--CRRGC-IDIHQKKHHI Neoscytalidium_novaehollandiae_CBS_122071 HKKHGGC-AD-C-GCC-C--IIDDED---HHHQHDH--QQIDEA-AEADD Neoscytalidium_dimidiatum_PWQ2367 HKKHGGC-AD-C-GCC-C--IIDDED---HHHQHDH--QQIDAA-AEADD 'Aureobasidium thailandense Ae-12' ALLGGGC-DD-C-GLCCCCCIDIDEIIIHHHHHHQHAHQQIQNN-AEADD Aureobasidium_caulivorum_CBS_242.64 AIIGGGCGID-C-GLCLC--D-DDEH---NHHQHQH--QQKIAA-AEADD Aureobasidium_leucospermi_CPC_15180 AIIGGGLG---CDGLC-C--I-IAEII--HHHQHQH--QQKIAA-AEADD 'Aureobasidium pullulans NRRL Y-7703' AIIGGGCGI--C-GLC-C--I-IAEII--HHHQHQH--QQKIAA-AEADD Aureobasidium_thailandense_NRRL_58543 ALLGGGC-DD-C-GLCCCCCIDIDEIIIHHHHHHQHAHQQIQNN-AEADD Phyllosticta_citrichinaensis_CBS_130529 AIIGGGCGA--C-GLC-D--E-DIEID--AHNQHQH--QQKGGR-RGRDD Phyllosticta_cavendishii_CPC_18344 EIIGGGCGA--C-GLC-C--G-DIEDQ--HHNQHQH--QQKDGR-RGADD Phyllosticta_hymenocallidicola_CBS_131310 ALIEGGCGA--C-GLC-C--G-DIEDQ--HHNQHQH--QQIEHA-AHNQD Guignardia_mangiferae_CBS_115313 AIIGGGCRA--C-GLC-C--G-DIEDQ--HHNQHKH--QQKKHN-NHADD Guignardia_mangiferae_CBS_115051 AIIGGGCRA--C-GLC-C--G-DIEDQ--HHNQHKH--QQKKHN-NHADD Phyllosticta_maculata_CPC_18347 EIIGGGCGA--C-GLC-C--G-DIEDQ--HHNQHQH--QQKDGR-RGADD Phyllosticta_vaccinii_ATCC_46255 AIIGGGCGA--C-GLC-C--G-DIEDQ--HHNQHQH--QQKDHN-NHADD Phyllosticta_yuccae_CBS_117136 AIIHHHDAA--C-GLC-C--G-DIEDQ--HHNQHDG--CCLLGR-RGADD 'Guignardia mangiferae m110805-4-2' AIIGGGCRA--C-GLC-C--G-DIEDQ--HHNQHKH--QQKKHN-NHADD Phyllosticta_hymenocallidicola_CBS_131309 ALIEGGCGA--C-GLC-C--G-DIEDQ--HHNQHQH--QQIEHA-AHNQD Lobaria_pulmonaria_L22 ELIEGGC-ICEC-GLC-C--DDDDE----HHNKHHH--QQIENAEAE-DA Ochrolechia_balcanica GLLGGGC-IC-C-GLC-C--IIDAED---HHHQHHH--QQQEAA-AEIDA 'Phyllosticta hymenocallidicola Ae-03' ALIEGGCGA--C-GLC-C--G-DIEDQ--HHNQHQH--QQIEHA-AHNQD 'Phyllosticta capitalensis Ae-11' AIIGGGCRA--C-GLC-C--G-DIEDQ--HHNQHKH--QQKKHN-NHADD 'Guignardia mangiferae Ae-26' AIIGGGCRA--C-GLC-C--G-DIEDQ--HHNQHKH--QQKKHN-NHADD 'Guignardia mangiferae Fi-10' AIIGGGCRA--C-GLC-C--G-DIEDQ--HHNQHKH--QQKKHN-NHADD 'Phyllosticta capitalensis Fi-13' AIIGGGCRA--C-GLC-C--G-DIEDQ--HHNQHKH--QQKKHN-NHADD 'Phyllosticta capitalensis Fi-16' AIIGGGCRA--C-GLC-C--G-DIEDQ--HHNQHKH--QQKKHN-NHADD Phyllosticta_capitalensis_CBS_119720 AIIGGGCRA--C-GLC-C--G-DIEDQ--HHNQHKH--QQKKHN-NHADD Phyllosticta_citrichinaensis_CBS_129764 AIIGGGCGA--C-GLC-L--G-DIEIQ--NHNQHQH--QQKGGR-RGRDD Guignardia_mangiferae_GZAAS6_1357 AIIGGGCRA--C-GLC-C--G-DIEDQ--HHNQHKH--QQKKHN-NHADD 'Neofusicoccum parvum Ps-03' AIIGGGC-DD-C-GLC-C--I-DDAD---HHNQHDH--QQKIAA-AHNDD 'Neofusicoccum parvum Ps-10' AIIGGGC-DD-C-GLC-C--I-DDAD---HHNQHDH--QQKIAA-AHNDD 'Neofusicoccum parvum Ps-17' AIIGGGC-DD-C-GLC-C--I-DDAD---HHNQHDH--QQKIAA-AHNDD Neofusicoccum_australe_CBS_115185 AIIGGGC-ID-C-GLC-C--I-DDED---HHNQHDH--QQKDHN-NHADD Neofusicoccum_corticosae_CPC_12926 ALLGGGC-ID-C-GLC-C--I-DDAD---HHNQHDH--QQIQNN-AEADD Neofusicoccum_eucalypticola_CBS_115679 ALLGGGC-ID-C-GLC-C--I-DIEI---HHNQHDH--QQIQNN-AEADD Botryosphaeria_lutea_CBS_121482 AIIGGGC-ID-C-GLC-C--I-DIEI---HHNQHDH--QQKDHN-NHADD Neofusicoccum_mediterraneum_CPC_13137 AIIGGGC-ID-C-GLC-C--I-DDAD---HHNQHDH--QQKDHN-NHADD Neofusicoccum_parvum_WTS_104 AIIGGGC-DD-C-GLC-C--I-DDAD---HHNQHDH--QQKIAA-AHNDD Botryosphaeria_parva_ATCC_58191 AIIGGGC-DD-C-GLC-C--I-DDAD---HHNQHDH--QQKIAA-AHNDD Botryosphaeria_parva_NRRL_46122 AIIGGGC-DD-C-GLC-C--I-DDAD---HHNQHDH--QQKIAA-AHNDD Neofusicoccum_protearum_CBS_115499 ALLGGGC-ID-C-GLC-C--I-DIAD---HHNQHDH--QQIQNN-AHNDD 'Pseudofusicoccum adansoniae Ae-01' HKIGGGC-AG-C-GLC-C--I-DI-D---HHNQHQH--QQKDAA-AEADD Pseudofusicoccum_ardesiacum_CBS_122062 ALLGGGC-AG-C-GLC-C--I-DI-D---HHNQHQH--QQIQNN-AEADD Pseudofusicoccum_artocarpi_B0431 ALLGGGC-AG-C-GLC-C--I-DI-D---HHNQHQH--QQIQNN-AHNQQ Pseudofusicoccum_adansoniae_B0441 HKIGGGC-AG-C-GLC-C--I-DI-D---HHNQHQH--QQKDAA-AHNQQ Pseudofusicoccum_kimberleyense_CBS_122058 ALLGGGC-AG-C-GLC-C--I-DI-D---HHNQHQH--QQIQNN-AEADD Pseudofusicoccum_olivaceum_WTS_58 ALLGGGC-AG-C-GLC-C--I-II-D---HHNQHQH--QQIQNN-AEADD Pseudofusicoccum_stromaticum_CBS_117448 HKIGGGC--GEC-GLC-C--I-DD-D---HHNQHQH--QQKDAA-AEADD 'Pseudofusicoccum adansoniae MFLUCC14-0517' HKIGGGC-AG-C-GLC-C--I-DI-D---HHNQHQH--QQKDAA-AEADD 'Neoscytalidium dimidiatum Ae-27' HKKHGGC-AD-C-GCC-C--IIDDED---HHHQHDH--QQIDAA-AEADD Neoscytalidium_dimidiatum_CBS_251.49 HKKHGGC-AD-C-GCC-C--IIDDED---HHHQHDH--QQIDAA-AEADD Scytalidium_hyalinum_CBS_145.78 HKKHGGC-AD-C-GCC-C--IIDDED---HHHQHDH--QQIDAA-AEADD Neoscytalidium_novaehollandiae_CBS_122071 LCGGCGGL-GGCG-LCI--L-G-CC----LCGRGCG---IAGLAE-AAAA Neoscytalidium_dimidiatum_PWQ2367 LCGGCGGL-GGCG-LCI--L-G-CC----LCGRGCG---IAGLAE-AAAA 'Aureobasidium thailandense Ae-12' LCGGCGR--GGCC-LC---A---CCEEDIIIRGGCGLAEIAGRRI-IAIK Aureobasidium_caulivorum_CBS_242.64 LCGGCGR--GGCC-LC---A---CCEEDIICRGGCGLAEIAGRRI-IIAK Aureobasidium_leucospermi_CPC_15180 LCGGCGR--GECC-LC---A---CCEEDIILRGGCGLAEIAGRRI-IIAK 'Aureobasidium pullulans NRRL Y-7703' LCGGCGR--GECC-AC---L---CCEEDIILRGGCGLAEIAGRRI-IIAK Aureobasidium_thailandense_NRRL_58543 LCGGCGR--GGCC-LC---A---CCEEDIIIRGGCGLAEIAGRRI-IAIK Phyllosticta_citrichinaensis_CBS_130529 LCGGCGRC-GECR-LLC-CR-E-CC----LCGRGCG---IAGLREIAAAA Phyllosticta_cavendishii_CPC_18344 LCGGCGAC-GECG-LC-ICG-G-CC----LCGRGCG---IRGIAEIAAAA Phyllosticta_hymenocallidicola_CBS_131310 LCGGCGRC-GECG-LCL--CAE-CC----LCGRGCG---IAGLREIAAAA Guignardia_mangiferae_CBS_115313 ICGGCGAC-GECGICCL--R-G-CC----LCGRGCG---IAGLREIAAAA Guignardia_mangiferae_CBS_115051 ICGGCGAC-GECGICCL--R-G-CC----LCGRGCG---IAGLREIAAAA Phyllosticta_maculata_CPC_18347 LCGGCGAC-GECG-LC-ICG-G-CC----LCGRGCG---DRGIAEIAAAA Phyllosticta_vaccinii_ATCC_46255 ICGGCGAC-GECG-LCL-GR-G-CC----LCGRGCG---IAGLREIAEDA Phyllosticta_yuccae_CBS_117136 LCGGCGAC-GGCG-LCLI-R-G-CC----LCGRGCG---IRGIAEIAA-- 'Guignardia mangiferae m110805-4-2' ICGGCGAC-GECGICCL--R-G-CC----LCGRGCG---IAGLREIAAAA Phyllosticta_hymenocallidicola_CBS_131309 LCGGCGRC-GECG-LCL--CAE-CC----LCGRGCG---IAGLREIAAAA Lobaria_pulmonaria_L22 ELGGCGGL-C-CGAC-GI-R-GACL----LCRRGCG---DAGL-A-AAI- Ochrolechia_balcanica ELGGCGGLEC-C-ACCG--G-G-CL----LCRRGCG---IAGLRD-AEID 'Phyllosticta hymenocallidicola Ae-03' LCGGCGRC-GECG-LCL--CAE-CC----LCGRGCG---IAGLREIAAAA 'Phyllosticta capitalensis Ae-11' ICGGCGAC-GECGICCL--R-G-CC----LCGRGCG---IAGLREIAAAA 'Guignardia mangiferae Ae-26' ICGGCGAC-GECGICCL--R-G-CC----LCGRGCG---IAGLREIAAAA 'Guignardia mangiferae Fi-10' ICGGCGAC-GECGICCL--R-G-CC----LCGRGCG---IAGLREIAAAA 'Phyllosticta capitalensis Fi-13' ICGGCGAC-GECGICCL--R-G-CC----LCGRGCG---IAGLREIAAAA 'Phyllosticta capitalensis Fi-16' ICGGCGAC-GECGICCL--R-G-CC----LCGRGCG---IAGLREIAAAA Phyllosticta_capitalensis_CBS_119720 ICGGCGAC-GECGICCL--R-G-CC----LCGRGCG---IAGLREIAAAA Phyllosticta_citrichinaensis_CBS_129764 LCGGCGRC-GECR-LLC-CR-E-CC----LCGRGCG---IAGLREIAAAA Guignardia_mangiferae_GZAAS6_1357 ICGGCGAC-GECGICCL--R-G-CC----LCGRGCG---IAGLREIAAAA 'Neofusicoccum parvum Ps-03' LCGGCGGL-GGCG-LCI--L-G-CC----LCRRGCG---IAGLAE-AAAA 'Neofusicoccum parvum Ps-10' LCGGCGGL-GGCG-LCI--L-G-CC----LCRRGCG---IAGLAE-AAAA 'Neofusicoccum parvum Ps-17' LCGGCGGL-GGCG-LCI--L-G-CC----LCRRGCG---IAGLAE-AAAA Neofusicoccum_australe_CBS_115185 LCGGCGGL-GGCG-LCI--L-G-CC----LCRRGCG---IAGLAE-AAAA Neofusicoccum_corticosae_CPC_12926 LCGGCGGL-GGCG-LCI--L-G-CC----LCRRGCG---IAGLAE-AAAA Neofusicoccum_eucalypticola_CBS_115679 LCGGCGGL-GGCG-LCI--L-G-CC----LCRRGCG---IAGLAE-AAAI Botryosphaeria_lutea_CBS_121482 LCGGCGGL-GGCG-LCI--L-G-CC----LCRRGCG---IAGLAE-AAAA Neofusicoccum_mediterraneum_CPC_13137 LCGGCGGL-GGCG-LCI--L-G-CC----LCGRGCG---IAGLAE-AAAA Neofusicoccum_parvum_WTS_104 LCGGCGGL-GGCG-LCI--L-G-CC----LCRRGCG---IAGLAE-AAAA Botryosphaeria_parva_ATCC_58191 LCGGCGGL-GGCG-LCI--L-G-CC----LCRRGCG---IAGLAE-AAAA Botryosphaeria_parva_NRRL_46122 LCGGCGGL-GGCG-LCI--L-G-CC----LCRRGCG---IAGLAE-AAAA Neofusicoccum_protearum_CBS_115499 LCGGCGGL-GGCG-LCI--L-G-CC----LCGRGCG---IAGLAE-AAAA 'Pseudofusicoccum adansoniae Ae-01' LCGGCGGL-GGCG-LCL--L-G-CC----LCRRGCG---IAGLAE-AAAA Pseudofusicoccum_ardesiacum_CBS_122062 LCGGCGGL-GGCG-LCL--L-G-CC----LCRRGCG---IAGLAE-AAAA Pseudofusicoccum_artocarpi_B0431 KQGGCGGL-GGCG-LCL--L-G-CC----LCRRGCG---IAGLAE-AAAA Pseudofusicoccum_adansoniae_B0441 KQGGCGGL-GGCG-LCL--L-G-CC----LCRRGCG---IAGLAE-AAAA Pseudofusicoccum_kimberleyense_CBS_122058 LCGGCGGL-GGCG-LCL--L-G-CC----LCRRGCG---IAGLAE-AAAA Pseudofusicoccum_olivaceum_WTS_58 LCGGCGGL-GGCG-LCL--L-G-CC----LCRRGCG---IAGLAE-AAAA Pseudofusicoccum_stromaticum_CBS_117448 LCGGCGGL-GGCG-LCL--L-G-CC----LCRRGCG---IAGLAE-AAAA 'Pseudofusicoccum adansoniae MFLUCC14-0517' LCGGCGGL-GGCG-LCL--L-G-CC----LCRRGCG---IAGLAE-AAAA 'Neoscytalidium dimidiatum Ae-27' LCGGCGGL-GGCG-LCI--L-G-CC----LCGRGCG---IAGLAE-AAAA Neoscytalidium_dimidiatum_CBS_251.49 LCGGCGGL-GGCG-LCI--L-G-CC----LCGRGCG---IAGLAE-AAAA Scytalidium_hyalinum_CBS_145.78 LCGGCGGL-GGCG-LCI--L-G-CC----LCGRGCG---IAGLAE-AAAA Neoscytalidium_novaehollandiae_CBS_122071 DNQDIQH-QK-QIEHN-HDH--Q---NDHH-QH-QQHDQQ-HQQHHDD-E Neoscytalidium_dimidiatum_PWQ2367 DNQDIQH-QK-KIEHN-HDH--Q---NDHH-QH-QQHDQQ-HQQHHAD-E 'Aureobasidium thailandense Ae-12' KQEANQHKQK-IDAAAAH-H--E---H-NH--H-AQKKQI-HQQ-HND-A Aureobasidium_caulivorum_CBS_242.64 KQEANQHKQKHIDAAA-H-H--A---H-NH--H-AQKKQI-HQQ-HND-D Aureobasidium_leucospermi_CPC_15180 KQEANQHKQKHIDAAA-H-H--A---H-NH--H-AAQKQI-HQQ-HNI-I 'Aureobasidium pullulans NRRL Y-7703' KQEANQHKQKHIDAAA-H-H--N---H-AH--H-AAQKQI-HQQ-HND-I Aureobasidium_thailandense_NRRL_58543 KQEANQHKQK-IDAAAAH-H--E---H-NH--H-AQKKQI-HQQ-HND-A Phyllosticta_citrichinaensis_CBS_130529 KNKDIQH-QK-KIEHN-H-H--A-K-H-HHHKH-AQHEDKKHQQHHAD-A Phyllosticta_cavendishii_CPC_18344 DAIQKQH-QK-QIEHN-HDH--Q-Q-H-HN-QH-EQHEDQ-HQQHHAD-A Phyllosticta_hymenocallidicola_CBS_131310 KNKDIQH-QK-KIEHN-H-H--AEH-H-HH-QH-AQHEDKKHQQHHAD-A Guignardia_mangiferae_CBS_115313 KNKDIQH-QK-KIEHN-HIH--Q-K-H-HH-QH-AQHEDQ-HQQHHNQ-A Guignardia_mangiferae_CBS_115051 KNKDIQH-QK-KIEHN-HDH--Q-K-H-HH-QH-AQHEDQ-HQQHHNQ-A Phyllosticta_maculata_CPC_18347 DAIQKQH-QK-QIEHN-HDH--Q-Q-H-HN-QH-EQHEDQ-HQQHHAD-A Phyllosticta_vaccinii_ATCC_46255 KNKDIQH-QK-KIEHN-H-H--QEKQH-HN-QH-EQHEDQ-HQQHHNQ-A Phyllosticta_yuccae_CBS_117136 DAIQKQH-QK-KIEHN-HIH--Q-K-N-HH-QH-KKHEDQ-HQQHHAD-A 'Guignardia mangiferae m110805-4-2' KNKDIQH-QK-KIEHN-HIH--Q-K-H-HH-QH-AQHEDQ-HQQHHNQ-A Phyllosticta_hymenocallidicola_CBS_131309 KNKDIQH-QK-KIEHN-H-H--AEH-H-HH-QH-AQHEDKKHQQHHAD-A Lobaria_pulmonaria_L22 NQEIIQH-QK-K-EHN-N-HE-Q-K-Q-H-DKHHHQIDIQ-HQQNEAD-A Ochrolechia_balcanica KNKDDQH-QK-KIEHN-N-HADQ-Q-Q-HHDHHEHQK-E--HQQNEID-N 'Phyllosticta hymenocallidicola Ae-03' KNKDIQH-QK-KIEHN-H-H--AEH-H-HH-QH-AQHEDKKHQQHHAD-A 'Phyllosticta capitalensis Ae-11' KNKDIQH-QK-KIEHN-HIH--Q-K-H-HH-QH-AQHEDQ-HQQHHNQ-A 'Guignardia mangiferae Ae-26' KNKDIQH-QK-KIEHN-HIH--Q-K-H-HH-QH-AQHEDQ-HQQHHNQ-A 'Guignardia mangiferae Fi-10' KNKDIQH-QK-KIEHN-HIH--Q-K-H-HH-QH-AQHEDQ-HQQHHNQ-A 'Phyllosticta capitalensis Fi-13' KNKDIQH-QK-KIEHN-HIH--Q-K-H-HH-QH-AQHEDQ-HQQHHNQ-A 'Phyllosticta capitalensis Fi-16' KNKDIQH-QK-KIEHN-HIH--Q-K-H-HH-QH-AQHEDQ-HQQHHNQ-A Phyllosticta_capitalensis_CBS_119720 KNKDIQH-QK-KIEHN-HIH--Q-K-H-HH-QH-AQHEDQ-HQQHHNQ-A Phyllosticta_citrichinaensis_CBS_129764 KNKDIQH-QK-KIEHN-H-H--A-K-H-HHHKH-AQHEDKKHQQHHAD-A Guignardia_mangiferae_GZAAS6_1357 KNKDIQH-QK-KIEHN-HIH--Q-K-H-HH-QH-AQHEDQ-HQQHHNQ-A 'Neofusicoccum parvum Ps-03' DNQDIQH-QK-KIEHN-HDH--Q---NDHH-QH-KQHDQQ-HQQHHAD-E 'Neofusicoccum parvum Ps-10' DNQDIQH-QK-KIEHN-HDH--Q---NDHH-QH-KQHDQQ-HQQHHAD-E 'Neofusicoccum parvum Ps-17' DNQDIQH-QK-KIEHN-HDH--Q---NDHH-QH-KQHDQQ-HQQHHAD-E Neofusicoccum_australe_CBS_115185 DNQDIQH-QK-KIEHN-HDH--Q---NIHH-QH-KQHDQQ-HQQHHAD-E Neofusicoccum_corticosae_CPC_12926 DNQDIQH-QK-KIEHN-HDH--Q---NDHH-QH-QQHDQQ-HQQHHAD-H Neofusicoccum_eucalypticola_CBS_115679 DNQDIQH-QK-KIEHN-HDH--Q---NIHH-QH-KQHQQI-HQQHHAD-H Botryosphaeria_lutea_CBS_121482 DNQDIQH-QK-KIEHN-HDH--Q---NDHH-QH-KQHDQQ-HQQHHAD-E Neofusicoccum_mediterraneum_CPC_13137 DNQDIQH-QK-KIEHN-HDH--Q---NDHH-QH-KQHDQQ-HQQHHAD-E Neofusicoccum_parvum_WTS_104 DNQDIQH-QK-KIEHN-HDH--Q---NDHH-QH-KQHDQQ-HQQHHAD-E Botryosphaeria_parva_ATCC_58191 DNQDIQH-QK-KIEHN-HDH--Q---NDHH-QH-KQHDQQ-HQQHHAD-E Botryosphaeria_parva_NRRL_46122 DNQDIQH-QK-KIEHN-HDH--Q---NDHH-QH-KQHDQQ-HQQHHAD-E Neofusicoccum_protearum_CBS_115499 DNQDIQH-QK-KIEHN-HDH--Q---NDHH-QH-KQHDQQ-HQQHHAD-E 'Pseudofusicoccum adansoniae Ae-01' DNQDIQH-QK-KIEHN-H-HA-Q---H-HHNQHAQQHQIQ-HQQHHAD-E Pseudofusicoccum_ardesiacum_CBS_122062 DNQDIQH-QK-KIEHN-H-HA-Q---H-HHNQHAQQHDQQ-HQQHHAD-E Pseudofusicoccum_artocarpi_B0431 DNQDIQH-QK-KIEHN-H-HA-Q---H-HHNQHAQQHQIQ-HQQEEAD-E Pseudofusicoccum_adansoniae_B0441 DNQDIQH-QK-KIEHN-H-HA-Q---H-HHNQHAQQHQIQ-HQQEEAD-E Pseudofusicoccum_kimberleyense_CBS_122058 DNQDIQH-QK-KIEHN-H-HA-Q---H-HHNQHAQQHQIQ-HQQHHAD-E Pseudofusicoccum_olivaceum_WTS_58 DNQDIQH-QK-KIEHN-H-HA-Q---H-HHNQHAQQHQIQ-HQQHHAD-E Pseudofusicoccum_stromaticum_CBS_117448 DNQDIQH-QK-KIEHN-H-HA-Q---H-HHNQHAQQHQIQ-HQQHHAD-E 'Pseudofusicoccum adansoniae MFLUCC14-0517' DNQDIQH-QK-KIEHN-H-HA-Q---H-HHNQHAQQHQIQ-HQQHHAD-E 'Neoscytalidium dimidiatum Ae-27' DNQDIQH-QK-KIEHN-HDH--Q---NDHH-QH-QQHDQQ-HQQHHAD-E Neoscytalidium_dimidiatum_CBS_251.49 DNQDIQH-QK-KIEHN-HDH--Q---NDHH-QH-QQHDQQ-HQQHHAD-E Scytalidium_hyalinum_CBS_145.78 DNQDIQH-QK-KIEHN-HDH--Q---NDHH-QH-QQHDQQ-HQQHHAD-E Neoscytalidium_novaehollandiae_CBS_122071 ----RR-CC-LLII--GRA-D--I---I-----K--QIDN-N-HHK-KHN Neoscytalidium_dimidiatum_PWQ2367 ----RR-CC-LLII--GRA-D--I---I-----K--QIDN-N-HHK-KHN 'Aureobasidium thailandense Ae-12' ----EA-AE-DDI-------I--I-AAII----II-I-DI-AADHK-KHN Aureobasidium_caulivorum_CBS_242.64 ----GR-RR-DDI-------D--D-A-II----KK-K-QI-A-HHK-KHN Aureobasidium_leucospermi_CPC_15180 ----GR-RR-DDI-------I--I-A-II----KK-K-QI-A-HHK-KHN 'Aureobasidium pullulans NRRL Y-7703' ----GR-RR-DDI-------I--I-A-II----KK-K-QI-A-HHK-KHN Aureobasidium_thailandense_NRRL_58543 ----EA-RG-CCL-------L--I-AAII----II-I-DI-NNHHK-KHN Phyllosticta_citrichinaensis_CBS_130529 A-DDGR-CC-IDI---HHK-Q----A-II-K-KKK-Q-QA-A-HHK-KHN Phyllosticta_cavendishii_CPC_18344 A-IDGR-CC-DIIDEDHHK-Q--I-E-DA-AAQKK-Q-DA-A-HHK-KHN Phyllosticta_hymenocallidicola_CBS_131310 A-LCGR-CC-LLI---GGI-DADI-A-II-I--II-Q-QN-N-HHK-KHN Guignardia_mangiferae_CBS_115313 A-LCGR-CC-LLD---GGI-D--I-A-II-I--II-Q-QN-N-HHK-KHN Guignardia_mangiferae_CBS_115051 A-LCGR-CC-LLD---GGI-D--I-A-II-I--II-Q-QN-N-HHK-KHN Phyllosticta_maculata_CPC_18347 A-IDGR-CC-DIIDEDHHK-Q--I-E-DA-AAQKK-Q-DA-A-HHK-KHN Phyllosticta_vaccinii_ATCC_46255 A-LCGR-CC-LLD---GGL-D--D-A-IDAI--IDNQ-KN-N-HHK-KHN Phyllosticta_yuccae_CBS_117136 AAIDGR-CC-III---HHK-Q--I-A-II-A-QKK-D-QN-N-HHK-KHN 'Guignardia mangiferae m110805-4-2' A-LCGR-CC-LLD---GGI-D--I-A-II-I--II-Q-QN-N-HHK-KHN Phyllosticta_hymenocallidicola_CBS_131309 A-LCGR-CC-LLI---GGI-DADI-A-II-I--II-Q-QN-N-HHK-KHN Lobaria_pulmonaria_L22 -----A--A-DDD----A--I--D-A-I-----I--D-AAID-DHKIKHN Ochrolechia_balcanica -----N-QN-QQD---GRCCI------I-----I--D-A--D-HHK-KHN 'Phyllosticta hymenocallidicola Ae-03' A-LCGR-CC-LLI---GGI-DADI-A-II-I--II-Q-QN-N-HHK-KHN 'Phyllosticta capitalensis Ae-11' A-LCGR-CC-LLD---GGI-D--I-A-II-I--II-Q-QN-N-HHK-KHN 'Guignardia mangiferae Ae-26' A-LCGR-CC-LLD---GGI-D--I-A-II-I--II-Q-QN-N-HHK-KHN 'Guignardia mangiferae Fi-10' A-LCGR-CC-LLD---GGI-D--I-A-II-I--II-Q-QN-N-HHK-KHN 'Phyllosticta capitalensis Fi-13' A-LCGR-CC-LLD---GGI-D--I-A-II-I--I--Q-QN-N-HHK-KHN 'Phyllosticta capitalensis Fi-16' A-LCGR-CC-LLD---GGI-D--I-A-II-I--II-Q-QN-N-HHK-KHN Phyllosticta_capitalensis_CBS_119720 A-LCGR-CC-LLD---GGI-D--I-A-II-I--II-Q-QN-N-HHK-KHN Phyllosticta_citrichinaensis_CBS_129764 A-DDGR-CC-IDI---HHK-Q----A-II-K-KKK-Q-QA-A-HHK-KHN Guignardia_mangiferae_GZAAS6_1357 A-LCGR-CC-LLD---GGI-D--I-A-II-I--II-Q-QN-N-HHK-KHN 'Neofusicoccum parvum Ps-03' ----RR-CC-LLI---GRR-I--I-A-I-----KK-QIDN-N-HHK-KHN 'Neofusicoccum parvum Ps-10' ----RR-CC-LLI---GRR-I--I-A-I-----KK-QIDN-N-HHK-KHN 'Neofusicoccum parvum Ps-17' ----RR-CC-LLI---GRR-I--I-A-I-----KK-QIDN-N-HHK-KHN Neofusicoccum_australe_CBS_115185 ----RR-CC-LLI---GRA-I--III-ID----K--Q--N-N-HHK-KHN Neofusicoccum_corticosae_CPC_12926 ----NNDCL-LL----GRA-I--III-ID----K--Q--N-N-HHI-KHN Neofusicoccum_eucalypticola_CBS_115679 ----NNDCL-LL----GRA-I--III-ID----K--Q--N-N-HHI-KHN Botryosphaeria_lutea_CBS_121482 ----RR-CC-LLI---GRA-I--III-ID----K--Q--N-N-HHK-KHN Neofusicoccum_mediterraneum_CPC_13137 ----RR-CC-LLI---GRA-I--III-ID----K--Q--N-N-HHK-KHN Neofusicoccum_parvum_WTS_104 ----RR-CC-LLI---GRR-I--I-A-I-----KK-QIDN-N-HHK-KHN Botryosphaeria_parva_ATCC_58191 ----RR-CC-LLI---GRR-I--I-A-I-----KK-QIDN-N-HHK-KHN Botryosphaeria_parva_NRRL_46122 ----RR-CC-LLI---GRR-I--I-A-I-----KK-QIDN-N-HHK-KHN Neofusicoccum_protearum_CBS_115499 ----RR-CC-LLIG--GRI-D--I---I-----K--QKDN-N-HHK-KHN 'Pseudofusicoccum adansoniae Ae-01' ----RR-CC-LII---GRR-I--IDA-II----KK-Q-DI-N-HHK-KHN Pseudofusicoccum_ardesiacum_CBS_122062 ----RR-CC-LII---GRR-I--IDA-II----KK-Q-DI-N-HHK-KHN Pseudofusicoccum_artocarpi_B0431 ----RR-CC-LII---GRR-I--IDA-II----KK-Q-DI-N-HHK-K-- Pseudofusicoccum_adansoniae_B0441 ----RR-CC-LII---GRR-I--IDA-II----KK-Q-DI-N-HHK-K-- Pseudofusicoccum_kimberleyense_CBS_122058 ----RR-CC-LII---GRR-I--IDA-II----KK-Q-DI-N-HHK-KHN Pseudofusicoccum_olivaceum_WTS_58 ----AR-CC-LDI---GRR-I--IIA-I-----KK-Q-DI-N-HHK--HN Pseudofusicoccum_stromaticum_CBS_117448 ----RR-CC-LII---GRR-I--IDA-II----KK-Q-DI-N-HHK-KHN 'Pseudofusicoccum adansoniae MFLUCC14-0517' ----RR-CC-LII---GRR-I--IDA-II----KK-Q-DI-N-HHK-KHN 'Neoscytalidium dimidiatum Ae-27' ----RR-CC-LLII--GRA-D--I---I-----K--QIDN-N-HHK-KHN Neoscytalidium_dimidiatum_CBS_251.49 ----RR-CC-LLII--GRA-D--I---I-----K--QIDN-N-HHK-KHN Scytalidium_hyalinum_CBS_145.78 ----RR-CC-LLII--GRA-D--I---I-----K--QIDN-N-HHK-KHN Neoscytalidium_novaehollandiae_CBS_122071 -QQKQHH-NIQNHHKNEE Neoscytalidium_dimidiatum_PWQ2367 -QQKQHH-NIQNHHKNEE 'Aureobasidium thailandense Ae-12' -QQKQHH-NIQNHHKAEE Aureobasidium_caulivorum_CBS_242.64 -QQKQHH-NIQNHHKNEE Aureobasidium_leucospermi_CPC_15180 -QQKQHH-NIQNHHKNEE 'Aureobasidium pullulans NRRL Y-7703' -QQKQHH-NIQNHHKNEE Aureobasidium_thailandense_NRRL_58543 -QQKQHH-NIQNHHKNEE Phyllosticta_citrichinaensis_CBS_130529 -QQKQHH-NIQNHHKNEE Phyllosticta_cavendishii_CPC_18344 -QQKQHH-NIQNHHKNEE Phyllosticta_hymenocallidicola_CBS_131310 -DQKQHH-NIQNHHKNEE Guignardia_mangiferae_CBS_115313 -DQKQHH-NIQNHHKNEE Guignardia_mangiferae_CBS_115051 -DQKQHH-NIQNHHKNEE Phyllosticta_maculata_CPC_18347 -QQKQHH-NIQNHHKNEE Phyllosticta_vaccinii_ATCC_46255 -DQKQHH-NIQNHHKNEE Phyllosticta_yuccae_CBS_117136 -QQKQHH-NIQNHHKNEE 'Guignardia mangiferae m110805-4-2' -DQKQHH-NIQNHHKNEE Phyllosticta_hymenocallidicola_CBS_131309 -DQKQHH-NIQNHHKNEE Lobaria_pulmonaria_L22 -QQKQHH-NIQNHHKNEE Ochrolechia_balcanica -QQKQHH-NIQNAHKNEE 'Phyllosticta hymenocallidicola Ae-03' -DQKQHH-NIQNHHKNEE 'Phyllosticta capitalensis Ae-11' -DQKQHH-NIQNHHKNEE 'Guignardia mangiferae Ae-26' -DQKQHH-NIQNHHKNEE 'Guignardia mangiferae Fi-10' -DQKQHH-NIQNHHKNEE 'Phyllosticta capitalensis Fi-13' -DQKQHH-NIQNHHKNEI 'Phyllosticta capitalensis Fi-16' -DQKQHH-NKDAEINHHE Phyllosticta_capitalensis_CBS_119720 -DQKQHH-NIQNHHKNEE Phyllosticta_citrichinaensis_CBS_129764 -QQKQHH-NIQNHHKNEE Guignardia_mangiferae_GZAAS6_1357 -DQKQHH-NIQNHHKNEE 'Neofusicoccum parvum Ps-03' -QQKQHH-NIQNHHKNEE 'Neofusicoccum parvum Ps-10' -QQKQHH-NIQNHHKNEE 'Neofusicoccum parvum Ps-17' -QQKQHH-NIQNHHKNEE Neofusicoccum_australe_CBS_115185 -QQKQHH-NIQNHHKNEE Neofusicoccum_corticosae_CPC_12926 -QQKQHH-NIQNHHKNEE Neofusicoccum_eucalypticola_CBS_115679 -QQKQHH-NIQNHHKNEE Botryosphaeria_lutea_CBS_121482 -QQKQHH-NIQNHHKNEE Neofusicoccum_mediterraneum_CPC_13137 -QQKQHH-NIQNHHKNEE Neofusicoccum_parvum_WTS_104 -QQKQHH-NIQNHHKNEE Botryosphaeria_parva_ATCC_58191 -QQKQHH-NIQNHHKNEE Botryosphaeria_parva_NRRL_46122 -QQKQHH-NIQNHHKNEE Neofusicoccum_protearum_CBS_115499 -QQKQHH-NIQNHHKNEE 'Pseudofusicoccum adansoniae Ae-01' -QQKQHH-NIQNHHKNEE Pseudofusicoccum_ardesiacum_CBS_122062 -QQKQHH-NIQNHHKNEE Pseudofusicoccum_artocarpi_B0431 ----------------EA Pseudofusicoccum_adansoniae_B0441 ----------------EA Pseudofusicoccum_kimberleyense_CBS_122058 -QQKQHH-NIQNHHKNEE Pseudofusicoccum_olivaceum_WTS_58 -QQKQHH-NIQNHHKNEE Pseudofusicoccum_stromaticum_CBS_117448 -QQKQHH-NIQNHHKNEE 'Pseudofusicoccum adansoniae MFLUCC14-0517' -QQKQHH-NIQNHHKNEE 'Neoscytalidium dimidiatum Ae-27' -QQKQHHHAIQNHHKNE- Neoscytalidium_dimidiatum_CBS_251.49 -QQKQHH-NIQNHHKNEE Scytalidium_hyalinum_CBS_145.78 -QQKQHH-NIQNHHKNEE ; END; BEGIN TREES; Title 'Botryosphaeriales and Dothideales_ITS2 sequence-secondary structure single letter code ML tree'; LINK Taxa = Taxa; TRANSLATE 1 Neoscytalidium_novaehollandiae_CBS_122071, 2 Neoscytalidium_dimidiatum_PWQ2367, 3 'Aureobasidium thailandense Ae-12', 4 Aureobasidium_caulivorum_CBS_242.64, 5 Aureobasidium_leucospermi_CPC_15180, 6 'Aureobasidium pullulans NRRL Y-7703', 7 Aureobasidium_thailandense_NRRL_58543, 8 Phyllosticta_citrichinaensis_CBS_130529, 9 Phyllosticta_cavendishii_CPC_18344, 10 Phyllosticta_hymenocallidicola_CBS_131310, 11 Guignardia_mangiferae_CBS_115313, 12 Guignardia_mangiferae_CBS_115051, 13 Phyllosticta_maculata_CPC_18347, 14 Phyllosticta_vaccinii_ATCC_46255, 15 Phyllosticta_yuccae_CBS_117136, 16 'Guignardia mangiferae m110805-4-2', 17 Phyllosticta_hymenocallidicola_CBS_131309, 18 Lobaria_pulmonaria_L22, 19 Ochrolechia_balcanica, 20 'Phyllosticta hymenocallidicola Ae-03', 21 'Phyllosticta capitalensis Ae-11', 22 'Guignardia mangiferae Ae-26', 23 'Guignardia mangiferae Fi-10', 24 'Phyllosticta capitalensis Fi-13', 25 'Phyllosticta capitalensis Fi-16', 26 Phyllosticta_capitalensis_CBS_119720, 27 Phyllosticta_citrichinaensis_CBS_129764, 28 Guignardia_mangiferae_GZAAS6_1357, 29 'Neofusicoccum parvum Ps-03', 30 'Neofusicoccum parvum Ps-10', 31 'Neofusicoccum parvum Ps-17', 32 Neofusicoccum_australe_CBS_115185, 33 Neofusicoccum_corticosae_CPC_12926, 34 Neofusicoccum_eucalypticola_CBS_115679, 35 Botryosphaeria_lutea_CBS_121482, 36 Neofusicoccum_mediterraneum_CPC_13137, 37 Neofusicoccum_parvum_WTS_104, 38 Botryosphaeria_parva_ATCC_58191, 39 Botryosphaeria_parva_NRRL_46122, 40 Neofusicoccum_protearum_CBS_115499, 41 'Pseudofusicoccum adansoniae Ae-01', 42 Pseudofusicoccum_ardesiacum_CBS_122062, 43 Pseudofusicoccum_artocarpi_B0431, 44 Pseudofusicoccum_adansoniae_B0441, 45 Pseudofusicoccum_kimberleyense_CBS_122058, 46 Pseudofusicoccum_olivaceum_WTS_58, 47 Pseudofusicoccum_stromaticum_CBS_117448, 48 'Pseudofusicoccum adansoniae MFLUCC14-0517', 49 'Neoscytalidium dimidiatum Ae-27', 50 Neoscytalidium_dimidiatum_CBS_251.49, 51 Scytalidium_hyalinum_CBS_145.78; TREE Imported_tree_0 = ((18:0.1077455985,19:0.2334249014)100.0:0.1556823816,(((3:0.0241983412,7:0.04181633468)100.0:0.1324046624,(4:0.03901797232,(5:0.01045912053,6:0.02132798191)100.0:0.02823242197)63.0:0.02190504927)100.0:0.252410665,((((8:0.02194946989,27:1.0E-8)100.0:0.09863888749,(15:0.1343504832,(9:1.0E-8,13:0.01535592389)100.0:0.07582948762)100.0:0.07683424374)99.0:0.09205424555,((10:0.0,17:0.0,20:0.0)100.0:0.06896980647,(14:0.05955389081,(12:1.0E-8,(24:0.005301125854,(25:0.05418359993,(11:0.0,16:0.0,21:0.0,22:0.0,23:0.0,26:0.0,28:0.0)56.0:1.0E-8)56.0:1.0E-8)64.0:0.00524765707)99.0:0.02511432595)100.0:0.06372077956)90.0:0.03807047683)96.0:0.08109533185,(((42:0.01114563622,(45:1.0E-8,46:0.02720748071)87.0:1.0E-8)65.0:0.03954854082,((43:0.07537529295,44:1.0E-8)100.0:0.1068507259,(47:0.00539806727,(41:0.0,48:0.0)95.0:1.0E-8)79.0:1.0E-8)90.0:0.03302727604)85.0:0.03276617593,((1:0.01637032351,(49:0.005398249004,(2:0.0,50:0.0,51:0.0)93.0:1.0E-8)96.0:1.0E-8)100.0:0.07558341671,((39:0.005236913473,(29:0.0,30:0.0,31:0.0,37:0.0,38:0.0)62.0:1.0E-8)100.0:0.01191475976,((36:0.005472541272,(32:0.005395946455,35:0.01089970703)93.0:0.005482780884)96.0:0.01990971174,(40:0.03353204087,(33:0.005353229289,34:0.04004977899)100.0:0.04738447447)71.0:0.02486470163)78.0:0.03438730781)100.0:0.04659285473)94.0:0.03713337065)85.0:0.08591446545)96.0:0.06712874054)91.0:0.1556823816); END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 268; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 268; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 268; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1542241928172; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7542846942957644410; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 5073554915042575471; mqVersion 275; checksumv 0 3 1338194406 null getNumChars 268 numChars 268 getNumTaxa 51 numTaxa 51 short false bits 27631 states 27631 sumSquaresStatesOnly 1.94526869195E11 sumSquares 1.94526869195E11 longCompressibleToShort false usingShortMatrix false NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 100; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1920 904; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #5073554915042575471 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -67; setLocation -9 0; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;