#NEXUS [written Fri Nov 22 17:28:38 JST 2013 by Mesquite version 2.75 (build 566) at YDegawa/192.168.78.33] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=25; TAXLABELS Mortierella_thereuopodae_T_NBRC109920_AB862878_cv Mortierella_thereuopodae_NBRC109921_AB862879_cv Mortierella_gamsii_T_CBS749.68_HQ630340 Mortierella_hyalina_CBS167.25_JX975895 Mortierella_exigua_T_of_Mortierella_sterilis_CBS655.68_JX976047 Mortierella_hyalina_CBS115655_HQ630355.1 Mortierella_zonata_T_CBS228.35_HQ630356 Mortierella_zonata_CBS615.70_JX975958 Mortierella_gamsii_CBS253.36_JX975968 Mortierella_schmuckeri_CBS295.59_HQ630338 Mortierella_zychae_T_CBS316.52_JX975979_c Mortierella_zychae_CBS531.81_JX975962_c Mortierella_wuyishanensis_T_CBS370.95_JX976094 Mortierella_nantahalensis_T_CBS610.70_JX976022_v Mortierella_elongata_CBS276.89_JX976111 Mortierella_schmuckeri_CBS156.78_JX975854 Mortierella_biramosa_CBS506.81_JX975963_v Mortierella_simplex_CBS110.68_JX975982_c Dissophora_decumbens_CBS301.87_JX976001_c Dissophora_ornata_T_CCBS347.77_HQ630278.1 Mortierella_parazychae_CBS868.71_JX975985_c Mortierella_beljakovae_CBS102878_JX976090 Mortierella_clonocystis_CBS176.74_JX975926 Mortierella_chienii_NBRC32831_JX976013_v Unbelopsis_isabellina_NRRL1757_JN943789.1 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=752; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Mortierella_thereuopodae_T_NBRC109920_AB862878_cv ----AAGGATCATTCAC-AATAAGTGT---T-TTATGGC---ACT-TT--------AATTCC-ATA--TCCACCTT--GTGTGCAACGTAGTTC--GTTTTTTCTTCTCTTTTTTATT---------------------------------TGGAGAGAGGGAACCTCGAACAAAACATCAACATTTTAAATATCA-ACAGACCGTTTGAAGTA-TTACATGAATAAATTA--ATTCAAAA-TACAACTTTCAACAACGGATTTTTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATTGAATTTTTGAACGCATATTGCGCTTTTTGGTATTCCGAAGAGCATGCTTGTTTGAGTATCAGTAAA--CACCTCAAGATTTTTTTTTTTTTCTTGAAAAAAAAACGAGTCTTGGACTTGAGCAAACCCAACACC----C----TTTAGAGGGCG---GCGGGTTGCTTGAAATAAAGGTGCAGC---------TGGACAATC---TCCTGAGCTAAAAGCATAT-CTATTT-----AGTCC-CGTAAA------AC-GG-------ATTATTACTTTT-GCTACAGCTTACATA-AAGGGAGTATATTGACCTTTTTTCGCTGACTTTTG--GGAAGTAAAACTCGA--------GTCGGTAAAACGACTTTGTCAACTCG-TCTCAAATCAAGAAG----------------- Mortierella_thereuopodae_NBRC109921_AB862879_cv GCGGAAGGATCATTCAC-AATAAGTGT---T-TTATGGC---ACT-TT--------AATTCCCATA--TCCACCTT--GTGTGCAACGTAGTTC--GTTTTTTCTTCTCTTTTTTATT---------------------------------TGGAGAGAGGGAACCTCGAACAAAACATCAACATTTTGTATATCA-ACAGACCGTTTGAAGTA-TTACATGAATAAATTA--ATTCAAAA-TACAACTTTCAACAACGGATTTTTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATTGAATCTTTGAACGCATATTGCGCTTTTTGGTATTCCGAAGAGCATGCTTGTTTGAGTATCAGTAAA--CACCTCAAGATTTTTTTTTTTTTCTTGAAAAAAAAACGAGTCTTGGACTTGAGCAAACCCAACACC----C----TTTAGAGGGCG---GCGGGTTGCTTGAAATAAAGGTGCAGC---------TGGACAATC---TCCTGAGCTAAAAGCATAT-CTATTT-----AGTCC-CGTAAA------AC-GG-------ATTATTACTTTT-GCTACAGCTTACATA-AAGGGAGTATATTGACCTTTTTTCGCTGACTGTTGTAGGAAGTAAAACTCGA--------GTCGGTAAAACGACTTTGTCAACTCG-TCTCAAAT------------------------ Mortierella_gamsii_T_CBS749.68_HQ630340 ------GGATCATTCAT-AATAAGTGT---T-TTATGGC---ACT-TTT------TAAATCC-ATA--TCCACCTT--GTGTGCAATGTCAGTC--GG-T-----CTTCTTTAT----------------------------------------GGAGAT-CGGCCA-------AACATCAAC-CTA-ATTTTT-A-ACTCTTTGTCTGAAAAA-TATTATGAATAAAATA--ATTCAAAA-TACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCTCTTTGGTATTCCGAAGAGCATGCTTGTTTGAGTATCAGTAAA--CACCTCAAAACTTTT--TTTTATTTTTGAAAAACA----GTTTTGGACTTGAGCAATCCCAACACCAATCT----TTTTTAGATCGGTGGCGGGTTGCTTGAAATGCAGGTGCAGC---------TGGACATTC---TCCTGAGCTAAAAGCATAT-TTATTT-----AGTCC-CGTCAA------AC-GG-------ATTATTACTTTT-GCTGCAGCTAATATA-AAGGGAGT---TTGACCGTTTTG-GCTGACTGATGCAGGATTTCACAAGGG---------TCGGCAACGATT-CTTGTAAAACTCGATCTCAAATCAAGTAAGACTACCCGCTGA---- Mortierella_hyalina_CBS167.25_JX975895 -------CATTCATAAT-AAGTGTTTT---A-TGGCACT---TTT-TT--------AAATCC-ATA--TCCACCTT--GTGTGCAATGTCAGG---GTTGGTTTCTCTCTTTT----------------------------------------GAGAGATCAACCCC------AAACATCAAC----TCTATCTTA-ACTCTTTGTCTGAAAAA-TATTATGAATAAAACA--ATTCAAAA-TACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCTCTTTGGTATTCCGAAGAGCATGCTTGTTTGAGTATCAGTAAA--CACCTCAAAGCCTTTTTTCTTTT-TTGAAGAAAG-----GCTTTGGACTTGAGCAATCCCAACACCAATCT----TTTAAAGAGAGGGGGCGGGTTGCTTGAAATGCAGGTGCAGC---------TGGACATTC---TCCTGAGCTAAAAGCATAT-TCATTT-----AGTCC-CGTCAA------AC-GG-------ATTATTACTTTT-GCTGCAGCTAACATA-AAGGGAGT---TTGACCATTTTG-GCTGACTGATGCAGGATTTTCA-CAAGA--------GTCTTCAAAACCTCTTGTTAAACTCGATCTCAAATCAAGTAAGACTACCCGCTGAACTT Mortierella_exigua_T_of_Mortierella_sterilis_CBS655.68_JX976047 ----------------------------------------------------------ATCC-ATA--TCCACCTT--GTGTGCAATGTCAGCC--G--T-----TCTCCTTAT----------------------------------------GGAAT--CGGCCA-------AACATCAAC-TTA-TTTTTT-A-ACTGTCTGTCTGAAAAC-TATTATGAATAAAACA--ATTCAAA--TACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCTCTTTGGTATTCCGAAGAGCATGCTTGTTTGAGTATCAGTAAA--CACCTCAAAGTCTCTA--ATTCAGTTTGGAG--------ACTTTGGACTTGAGCAATCCCAACACCAGTCC------TCGCGACTGGCGGAGGGCTGCTTGAAATGCAGGTGCAGC---------TGGACATTC---TCCTGAGCTATAAGCATAT-TTATTT-----AGTCC-CGTCAA------AC-GG-------ATTATTACTTTT-GCTGCAGCTAACATA-AAGGGAGT---CTGACCATATTG-GCTGACTGATGCAGGATTTCACAAGGG---------CTGGCAACAGCT----------------------------------------------- Mortierella_hyalina_CBS115655_HQ630355.1 -------------------------------------------TT-TT--------TAATCC-ATA--TCCACCTT--GTGTGCAATGTCAGG---GTTGGTTTCTCTCTTTT----------------------------------------GAGAGATCAACCCC------AAACATCAAC----TCTATCTTA-ACTCTTTGTCTGAAAAA-TATTATGAATAAAACA--ATTCAAAA-TACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCTCTTTGGTATTCCGAAGAGCATGCTTGTTTGAGTATCAGTAAA--CACCTCAAAGCCTTTTTTCTTTT-TTGAAGAAAG-----GCTTTGGACTTGAGCAATCCCAACACCAATCT----TTTAAAGAGAGGGGGCGGGTTGCTTGAAATGCAGGTGCAGC---------TGGACATTC---TCCTGAGCTAAAAGCATAT-TCATTT-----AGTCC-CGTCAA------AC-GG-------ATTATTACTTTT-GCTGCAGCTAATATA-AAGGGAGT---TTGACCATTTTG-GCTGACTGATGCAGGATTTTCA-CAAGA--------GTCTTCAAAACCTCTTGTTAAACTCGATCTCAAATCAAGTAAGACTACCCGCTGA---- Mortierella_zonata_T_CBS228.35_HQ630356 ------------------------------------------TTT-TC--------AATTCC-ATTATTCCACCTTT-GTGTGCAATGTCAGG---GTTGATTT-TCTCTCGA----------------------------------------GAG-GATCAGCCCC------AAACATCAAC----TATATCTCA-ACTCTTTGTCTGAAAAA-TATTATGAATAAAACA--ATTCAAAA-TACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCTCTTTGGTATTCCGAAGAGCATGCTTGTTTGAGTATCAGTAAA--CACCTCAAAGCCCTTTTTCTTTT-TTGAAGAAAG-----GCTTTGGACTTGAGCAATCCCAACACTTTTTT----TTTTTAAAGTG---GCGGGTTGCTTGAAATGCAGGTGCAGC---------TGGACATTC---TCCTGAGCTAAAAGCATAT-TCATTT-----AGTCC-CGTCAA------AC-GG-------ATTATTACTTTT-GCTGCAGCTAACATA-AAGGGAGT---TTGACCATTTTG-GCTGACTGATGCAGGAATTTCA-CAAGA--------GTCTTCAAAAGCTCTTGTTAAACTCGATCTC---------------------------- Mortierella_zonata_CBS615.70_JX975958 ----------CATTCAT-AATAAGTGT---T-TTATGGC---ACT-TTT------TAAATCC-ATA--TCCACCTT--GTGTGCAATGTCAGTC--GA-T-----CTTCTTTAT----------------------------------------GGAGAT-CGGCCA-------AACATCAAC-CTA-ATTTTTTA-ACTCTTTGTCTGAAAAA-TATTATGAATAAAATA--ATTCAAAA-TACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCTCTTTGGTATTCCGAAGAGCATGCTTGTTTGAGTATCAGTAAA--CACCTCAAAACTTTTGATTTTTTTTTTAAAAAAAAAAAAGTTTTGGACTTGAGCAATCCCAACACCAATCT----TTTTTAGATCGGCGGCGGGTTGCTTGAAATGCAGGTGCAGC---------TGGACATTC---TCCTGAGCTAAAAGCATAT-TTATTT-----AGTCC-CGTCAA------AC-GG-------ATTATTACTTTT-GCTGCAGCTAATATA-AAGGGAGT---TTGACCGTATTG-GCTGACTGATGCAGGATTTCACAAGGG---------TCGGCAACGATT-CTTGTAAAACTCGATCTCAAATCAAGTAAAACTACCCGCTGAACTT Mortierella_gamsii_CBS253.36_JX975968 ------GGATCATTCAT-AATAAGTGT---T-TTATGGC---ACT-TTT------TAAATCC-ATA--TCCACCTT--GTGTGCAATGTCAGTC--GG-T-----CTTCTTTAT----------------------------------------GGAGAT-CGGCCA-------AACATCAAC-CTA-ATTTTTTA-ACTCTTTGTCTGAAAAA-TATTATGAATAAAATA--ATTCAAAA-TACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCTCTTTGGTATTCCGAAGAGCATGCTTGTTTGAGTATCAGTAAA--CACCTCAAAACTTTT--TTTTATTTTTGAAAAACA----GTTTTGGACTTGAGCAATCCCAACACCAATCT----TTTTTAGATCGGTGGCGGGTTGCTTGAAATGCAGGTGCAGC---------TGGACATTC---TCCTGAGCTAAAAGCATAT-TTATTT-----AGTCC-CGTCAA------AC-GG-------ATTATTACTTTT-GCTGCAGCTAATATA-AAGGGAGT---TTGACCGTTTTG-GCTGACTGATGCAGGATTTCACAAGGG---------TCGGCAACGATT-CTTGTAAAACTCGATCTCAAATCAAGTAAGACTACCCGCTGA---- Mortierella_schmuckeri_CBS295.59_HQ630338 ------GGATCATTCAT-AATAAGTGT---T-TTATGGC---ACT-TTT------TAAATCC-ATA--TCCACCTT--GTGTGCAATGTCAGTC--AA-T-----CTTCTTCAT----------------------------------------GGAGAT-TGACCA-------AACATCAAC-CTA-ATTTTT-A-ACTCTTTGTCTGAAAAA-TATTATGAATAAA-CA--ATTCAAAA-TACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCTCTTTGGTATTCCGAAGAGCATGCTTGTTTGAGTATCAGTAAA--CACCTCAAATCTCTT---AATTTTTTTGAGA--------GTTTTGGACTTGAGCAATCCCAACACCAGTCT----ATTTCAGATCGGCGGCGGGTTGCTTGAAATGCAGGTGCAGC---------TGGACATTC---TCCTGAGCTAAAAGCATAT-TTATTT-----AGTCC-CGTCAA------AC-GG-------ATTATTACTTTT-GCTGCAGCTAATATA-AAGGGAGT---TTGACCGTATTG-GCTGACTGATGCAGGATTTCACAAAGG---------TCGGCAACGATC-CTTGTAAAACTCGATCTCAAATCAAGTAAGACTACCCGCTGA---- Mortierella_zychae_T_CBS316.52_JX975979_c -------------TCAT-AATAAGTGT---T-T-ATGGC---ACT-TTT------TAA-TCC-ATA--TCCACCTT--GTGTGCAATGTCAGCC--GTCT-----TTTCTTTAT----------------------------------------GGAAAGGCAGCCA-------AACATCAAC-TTA-TTTTTTTA-ACTGTCTGTCTGAAAAC-TATTATGAATAAA-CA--ATTCAAA--TACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCTCTTTGGTATTCCGAAGAGCATGCTTGTTTGAGTATCAGTAAA--CACCTCAAAGCCTTTA--ATTCCGTTTGGAA--------GCTTTGGACTTGAGCAATCCCAACACCAGTC-------TCGCGACTGGCGGAGGGTTGCTTGAAATGCAGGTGCAGC---------TGGACATTC---TCCTGAGCTATAAGCATAT-TTATTT-----AGTCC-CGTCAA------AC-GG-------ATTATTACTTTT-GCTGCAGCTAACATA-AAGGGAGT---CTGACCGCATTA-GCTGACTGATGCAGGATTTCACAAGGGA--------CTGGCAACAGCCTCTTGTAAAACTCGATCTCAAATCAAGTAAGACTACCCGCTGAACTT Mortierella_zychae_CBS531.81_JX975962_c ----------CATTCAT-AATAAGTGT---T-T-ATGGC---ACT-TTT------TAAATCC-ATA--TCCACCTT--GTGTGCAATGTCAGCC--GTCT-----TTTCTTTAT----------------------------------------GGAAAGGCAGCCA-------AACATCAAC-TTA-TTTTTTTA-ACTGTCTGTCTGAAAAC-TATTATGAATAAA-CA--ATTCAAA--TACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCTCTTTGGTATTCCGAAGAGCATGCTTGTTTGAGTATCAGTAAA--CACCTCAAAGCCTTTA--ATTCCGTTTGGAA--------GCTTTGGACTTGAGCAATCCCAACACCAGTC-------TCGCGACTGGCGGAGGGTTGCTTGAAATGCAGGTGCAGC---------TGGACATTC---TCCTGAGCTATAAGCATAT-TTATTT-----AGTCC-CGTCAA------AC-GG-------ATTATTACTTTT-GCTGCAGCTAACATA-AAGGGAGT---CTGACCGCATTA-GCTGACTGATGCAGGATTTCACAAGGGA--------CTGGCAACAGCCTCTTGTAAAACTCGATCTCAAATCAAGTAAGACTACCCGCTGAACTT Mortierella_wuyishanensis_T_CBS370.95_JX976094 ----------CATTCAT-AATAAGTGT---T-TTATGGC---ACT-TTT------TAAAATCCATA--TCCACCTT--GTGTGCAATGTCAGTT--AT---------TCCTTGC-------------------------------------------GAA-TAACTA-------AACATCAAC-----CTAACTTA-ACCTATAGTCTGAAAAA-TATTATGAATAAC-TA--ATTCAAAA-TACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCTCTTTGGTATTCCGAAGAGCATGCTTGTTTGAGTATCAGTAAA--CACCTCAAACCTCTTG--GTTTTTTCCAAGA--------GTTTTGGACTTGAGCAAACCCAACACCT-TTT----CTCACGATTTAGTGGCGGGTTGCTTGAAATGCAGGTGCAGC---------TGGACATTC---TCCTGAGCTAAAAGCATAT-CTATTT-----AGTCC-CGTCAA------AC-GG-------ATTATTACTTTT-GCTGCAGCTAACATA-AAGGGAGTT--TTGACCGTATTG-GCTGACTGATGCAGGATTTCAC---AGA--------GTCGGAAACGAT-TCTGTCAAACTCGATCTCAAATCAAGTAAGACTACCCGCTGAACTT Mortierella_nantahalensis_T_CBS610.70_JX976022_v ----------CATTCAT-AATAAGTGT---T-TTATGGC---ACT-TTT------TAA--TCCATA--TCCACCTT--GTGTGCAATGTCAGTT--AT---------TCCTTGC-------------------------------------------GAA-TAACTA-------AACATCAAC-----TCAACTTA-ACCTTTAGTCTGAAAAA-TATTATGAATAAC-TA--ATTCAAAA-TACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCTCTTTGGTATTCCGAAGAGCATGCTTGTTTGAGTATCAGTAAA--CACCTCAAAACTCTTG--GTTTTTTCCAAGG--------GTTTTGGACTTGAGCAAACCCAACACCT-TCT----CTCACGATTTGGTGGCGGGTTGCTTGAAATGCAGGTGCAGC---------CGGACATTC---TCCTGAGCTAAAAGCATAT-CTATTT-----AGTCC-CGTCAA------AC-GG-------ATTATTACTTTTTGCTGCAGCTAACATA-TAGGGAGTT--TTGACCGTATTG-GCTGACTGATGCAGGATTTCAC---AGA--------GTCGGAAACGAT-TCTGTCAAACTCGATCTCAAATCAAGTAAGACTACCCGCTGAACTT Mortierella_elongata_CBS276.89_JX976111 -----------ATTCAT-AATAAGTGT---T-TTATGGC---ACT-TTT------TAAATCC-ATA--TCCACCTT--GTGTGCAATGTCAGTC--GA-T-----CTTCTTCAT----------------------------------------GGAGAT-CGACCA-------AACATCAAC-CTTTATTTTTTA-ACTCTTTGTCTGAAAAA-TATTATGAATAAA-CA--ATTCAAAA-TACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCTCTTTGGTATTCCGAAGAGCATGCTTGTTTGAGTATCAGTAAA--CACCTCAAAGCTTTTG--GATTTTTTTAATCGAAAA---GCTTTGGACTTGAGCAATCCCAACACCAATCT----TTTTGAGATCGGTGGCGGGTTGCTTGAAATGCAGGTGCAGC---------TGGACATTC---TCCTGAGCTAAAAGCATAT-TCATTT-----AGTCC-CGTCAA------AC-GG-------ATTATTACTTTT-GCTGCAGCTAACATA-AAGGGAGT---TTGACCGTATTG-GCTGACTGATGCAGGATTTCACAAGGG---------TCGGCAACGATT-CTTGTTAAACTCGATCTCAAATCAAGTAAGACTACCCGCTGAACTT Mortierella_schmuckeri_CBS156.78_JX975854 ----------CATTCAT-AATAAGTGT---T-TTATGGC---ACT-TTT------TAAATCC-ATA--TCCACCTT--GTGTGCAATGTCAGTC--GA-T-----CTTCTTCAT----------------------------------------GGAGAT-TGACCA-------AACATCAAC-CTA-ATTTTT-A-ACTCTTTGTCTGAAAAA-TATTATGAATAAA-CA--ATTCAAAA-TACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCTCTTTGGTATTCCGAAGAGCATGCTTGTTTGAGTATCAGTAAA--CACCTCAAATCTCTT---AATTTTTTTGAGA--------GTTTTGGACTTGAGCAATCCCAACACCAGTCT----ATTTCAGATCGGCGGCGGGTTGCTTGAAATGCAGGTGCAGC---------TGGACATTC---TCCTGAGCTAAAAGCATAT-TTATTT-----AGTCC-CGTCAA------AC-GG-------ATTATTACTTTT-GCTGCAGCTAATATA-AAGGGAGT---TTGACCGTATTG-GCTGACTGATGCAGGATTTCACAAAGG---------TCGGCAACGATC-CTTGTAAAACTCGATCTCAAATCAAGTAAGACTACCCGCTGAACTT Mortierella_biramosa_CBS506.81_JX975963_v ----------CATTCATTAATAAGTGT---T-TTATGGC---ACT-TTT------TAAAATCCATA--TCCACCTT--GTGTGCAATGTCAGTT--AT---------TCCTTGC-------------------------------------------GAA-TAACTA-------AACATCAAC-----TTAACTTA-ACCTTTAGTCTGAAAAA-TATTATGAATAAC-TA--ATTCAAAA-TACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCTCTTTGGTATTCCGAAGAGCATGCTTGTTTGAGTATCAGTAAA--CACCTCAAAACTCTTG--GTTTTTTCCAAGA--------GTTTTGGACTTGAGCAAACCCAACACCT-TCT----CTCACGATTTGGCGGCGGGTTGCTTGAAATGCAGGTGCAGC---------TGGACATTC---TCCTGAGCTAAAAGCATAT-CTATTT-----AGTCC-CGTCAA------AC-GG-------ATTATTACTTTTTGCTGCAGCTAACATA-AAGGGAGTT--TTGACCGTATTG-GCTGACTGATGCAGGATTTCAC---AGA--------GTCGGAAACGAT-TCTGTCAAACTCGATCTCAAATCAAGTAAGACTACCCGCTGAACTT Mortierella_simplex_CBS110.68_JX975982_c ----------CATTCAC-AATAAGTGT---TTTTATGGC---ACT-TTA------AAA-TCC-ATA--TCCACCTT--GTGTGCAACGTTTTG---AGGTCTTTTTATCATTTCGCCGGCTGCAGAATGTTTGTTCTACAGCCGCGGAAGGCAAGATAAGGAGGCTTTTTAT---ATCTTAACTCTTGATCTTTAA-CAAATTTGTCTGAAAATCTATTGCGAATTAACTTTCAAAATAAA-TACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCTCTCTGGTATTCCGGAGAGCATGCTTGTTTGAGTATCAGTAAAA-CACCTCAAGTCCGCTCTTCATCTTT----GAAGACG---GATTTGGACTTGAGCGATCCCAACAGGAGGGC-------TTTCCTTCT-GGCGGGTTGCTTGAAATGCAGGTGCAGC---------TGGACTTTC---TTCTGGGCTATAAGCATAT-TTATTT-----AGTCC-CGTTAA------AC-GG-------ATTATTACTTTTTGCTGCAGCCAACGTA-AAGGTTGA---TTGTCCTCTT---GCTGACTGATGCAGGAATTTTCGGGGGA--------TCGGCAACGATTTCCCGTTAAACTCGATCTCAAATCAAGTAAGACTACCCGCTGAACTT Dissophora_decumbens_CBS301.87_JX976001_c ----------CATTCAC-AATAAGTGT---TATTATGGC---ACT-TTA------AAA-TCC-ATA--TCCACCTT--GTGTGCAATGTTTTG---AGCTCTCTT---CATTTCGATG---------------------------------------AAGAGAACTTTTAAT--TACCTCAACTCTTAATCTTTAA-TTTTTTTGTCTGAAAAA-TATTTCGAATTTAATT-CAAAATAAA-CACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCTCTCTGGTATTCCGGAGAGCATGCTTGTTTGAGTATCAGTAAAA-CACCTCAACTCTATTCTTTTTTTT----AAGGGATG---GAGTTGGACTTGAGCAATCCCAACAGGAGGGCAATTTTATTTCCCTCC-GGCGGGCTGCTTGAAATGCAGGTGCAGC---------TGGACTTTC---TTCTGAGCTATAAGCATAT-TTATTT-----AGTCC-CGTAAC------AC-GG-------ATTATTACTTTTTGCTGCAGCTAACATA-AAGGTTGA---TTGTCCTATT---GCTGACTGATGCAGGAATTTTCGGGTAA--------TTGGCAACAATTATCTGTTAAACTCGATCTCAAATCAAGTAAGACTACCCGCTGAACTT Dissophora_ornata_T_CCBS347.77_HQ630278.1 -----------------------GGGT---TATTATGGC---ACC-TTA------AAAATCC-ATA--TCCACCTT--GTGTGCAATGTTTTGTAGAGCTCTCTTTATCATTTCGATG---------------------------------------AAGAGGACTTTTAAT--TATCTCAACTCTT----TTTAA-TTTTTTTGTCTGAAAAA-TATTGCGAATTTAATT-CAAAATAAA-CACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCTCTCTGGTATTCCGGAGAGCATGCTTGTTTGAGTATCAGTAAAA-CACCTCAATTCCGTTCTTTTTTTTTTAAAGGGAATG---GAGTTGGACTTGAGCAATCCCAACAGGAAGGCAATTTTATTTCCTTCCCGGCGGGCTGCTTGAAATGCAGGTGCAGC---------TGGACTTTC---TTCTGGGCTATAAGCATAT-TTATTT-----AGTCC-CGTAAC------AC-GG-------ATTATTACTTTTTGCTGCAGCTAACATA-AAGGTTGA---ATGTCCTATT---GCTGACTGATGCAGGAATTTTCGGGTGA--------TTGGCAACAATTACCTGTTAAACTCGATCTCAAATCAAGTAAGACTACCCGCTGA---- Mortierella_parazychae_CBS868.71_JX975985_c ----------CATTCAT-AAAGCGAGTGGGTTTTATGGCCCCATTTTTTAAAAAAAAAAATCCATA--TCCACCTT--GTGTGCAATGTTTGAAGGGATT------TTCTTTAC-----------------------------------------GAGAATTCCTTTTT-----CATAACAAC---TTTATTTTTAACGATTTTGTCTGAAAAATATTTACGAATTCT-TA--ATTCGAAA-TACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCTCTCTGGTATTCCGGAGAGCATGCTTGTTTGAGTATCAGTAAC--ACCCTCAAAGTCTTTTTTTTTGTTAAAAAAG--------AATTTGGTCTTGAGTTTTCCCAACGCGTTAAA----GAATATTTTTCGTGGCGGGTTACTTGAAATACAGGTGCGGC---------CGAGTCTCTCAACTCTGGGCTAAAAGCATATCTTAGTT-----GATCC-CGTTAA------ACGGATT-----ATCATT-TTTTT-GCTGCAGCCAACTTATAAAGGAGT---TTGACTT---GC-GCTGACTGATGCAGGAATTAAGAAATAAAAAAGTTCTCTTTTTTATTCCTTAACAAAACTCGATCTCAAATCAAGCAAGACTACCCGCTGAACTT Mortierella_beljakovae_CBS102878_JX976090 ----------CATTCAT-AATAAAAGT--GTTTTATGGC---ACTTTT-----AAAACAATCCATA--TCCACCTT--GTGTGCAATGTTT---------------TTTCTTA---------------------------------------------------TTTTT-----CAACTCA------TTTTTTTAATTTATTTTGTCTGAAATATATT-ATGAATACT-TA--ATTCAAAAATATAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCTCTCTGGTATTCCGGAGAGCATGCTTGTTTGAGTATCAGTAAA--CACCTCAGATCCCAAGATTTGATTCTT--GG--------GGTTTGGATTTGAGTAATCCTAACGAGA-AGG----CATTCGCCAACTTGGCAGGTCACTTGAAATGCAGGTGCAGC---------TGAACATTC---TTCTGAGCTAAAAGCATAT-TTATTT-----AGTCC-TGTTGACTCTTTATGAGTTTGCGGATTATTACTTTT-GCTGCAGCTAACATA-AAGGTTGA---ATGATTTCAAAT-GCTGACTGATGCAGGAATTTATCAGT--------------TTATATAAAACTGTTAAACTCGATCTCAAATCAAGTAAGACTACCCGCTGAACTT Mortierella_clonocystis_CBS176.74_JX975926 ----------CATTCACAAACGAGTGT---T-TTATGGC---ACTCTTT------AAAAATCCATA--TCCACCTT--GTGTGCAATGTTTGTT-GGGAAAGTCTTTTCTTTCC--------------------------------------------------CTTCATA---AATATCAAC-CTATATCTTTAACAACATTCGTCTGATAACATATTATGAATATACTT-AATTCAAAA-TATAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCTCTTTGGTATTCCGAAGAGCATGCTTGTTTGAGTATCAGTAAA--CACCTCAACCTCTTCTTGATTTTTCAAAAGG--------AGGGTGGACTTGAGCTATCCCAACAAC-----------CTTTACCGGTCGGCGGGCGGCTTGAAATGCAGGTGCAGC---------TGGACTTTT---ATCTGAGCTAAAAGCATAT-CTATTT-----AGTCCTCGTCAA------ACAGG-------ATTATTACTTTT-GCTGCAGCTAACATA-AAGGATAA---TTGTCCTCTTT--GCTGACTGATGCAGGATTTTAC----GA--------CACTTTATGTGT---TGTTCAACTCGATCTCAAATCAAGTAAGACTACCCGCTGAACTT Mortierella_chienii_NBRC32831_JX976013_v ----------CATTCACAATTTACAAGTGCTCCTACGCTCCAACTCCTCTACGGGGAAGGAG-ACAAGGACGCTGTGGACGAAAAATCCATTCCCACCTTGTGTGTATCGTAACAAACAACCTATT-------------------------TCACAGAATATGATTTTTAGC--AAGACCGTCTGAATGCATCTCA-TTAGCCGATCTGCGAAA--GCAGGGAGGAAAAAA--AAATGAAA-TACAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAACGCGATATGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCTCTTTGGTATTCCGAAGAGCATGCTTGTTTGAGTATCAGAGAACCTATCTCGAACCCTTT-----TTTTCTGAGGG--------ATCGAGGAACTGAGTAATTCCGGTTC------------TTGTCAAC-----TGGGTTACTTGAAATGAGGGTGCATCAATCTCCCTTGGGTTCATATTCCTTGGCCTGAAAGCATAT-CTATTT-----AGTCC-CGTCAA------AA-GG-------ATTATTGCTCTTTGCTGAAAGCGCTATA--GGGGAGC---CTGAGAGGAGTCTTGCCTCGAATACAGGAACTCTAA----------------------------TCATAAACTCGATCTCAAATCAAGTAAGACTACCCGCTGAACTT Unbelopsis_isabellina_NRRL1757_JN943789.1 ------CTTCCGTAGGTGAACCTGCGGAAGGATCATTACCAAAAGATAATCTTTCAAATCGAAAGATCTTTTCCTT---TGTGCTGGCTTTGAC-CGTATGTAATTTTGGGACTTAAACATGGTAGCTT----------------------TTTTGTTACCGGTCCCAAA----AACAATTATATCATCCTTATGAAAAACTTACTGAACAACTAAACAATGATTTTAATAATCTGTTTAA-AACAACTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCACTCCTTGGTATTCCGAGGAGTATGCCTGTTTCAGTATCATGAGCACTCTCACACCTAACCTTTGGGTTTTGTTGTGGAATTGGGATGCGCCGATTTTAATAGTCGGCACTCCTAAAA-------TGTAGTTCTTGGCTG-TTTCCTACTACAGCAGTTTGGCCTAATAGTTTTGACTTTT---GTCAAATCTTTGGCTACAT-TTGCTTCTGGAAATCAGTGTTGATAAT--ACAGAAA-ACTCATTCAAACTTTGATCTGAAATCAGGAGG---GCTACCCGCTGAACTTAAGCATATCAATAAGCGGAGAAA------------------------------------------------------------------------------ ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 752; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 752; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 752; END; BEGIN TREES; Title Imported_trees; LINK Taxa = Taxa; TRANSLATE 1 Mortierella_thereuopodae_T_NBRC109920_AB862878_cv, 2 Mortierella_thereuopodae_NBRC109921_AB862879_cv, 3 Mortierella_gamsii_T_CBS749.68_HQ630340, 4 Mortierella_hyalina_CBS167.25_JX975895, 5 Mortierella_exigua_T_of_Mortierella_sterilis_CBS655.68_JX976047, 6 Mortierella_hyalina_CBS115655_HQ630355.1, 7 Mortierella_zonata_T_CBS228.35_HQ630356, 8 Mortierella_zonata_CBS615.70_JX975958, 9 Mortierella_gamsii_CBS253.36_JX975968, 10 Mortierella_schmuckeri_CBS295.59_HQ630338, 11 Mortierella_zychae_T_CBS316.52_JX975979_c, 12 Mortierella_zychae_CBS531.81_JX975962_c, 13 Mortierella_wuyishanensis_T_CBS370.95_JX976094, 14 Mortierella_nantahalensis_T_CBS610.70_JX976022_v, 15 Mortierella_elongata_CBS276.89_JX976111, 16 Mortierella_schmuckeri_CBS156.78_JX975854, 17 Mortierella_biramosa_CBS506.81_JX975963_v, 18 Mortierella_simplex_CBS110.68_JX975982_c, 19 Dissophora_decumbens_CBS301.87_JX976001_c, 20 Dissophora_ornata_T_CCBS347.77_HQ630278.1, 21 Mortierella_parazychae_CBS868.71_JX975985_c, 22 Mortierella_beljakovae_CBS102878_JX976090, 23 Mortierella_clonocystis_CBS176.74_JX975926, 24 Mortierella_chienii_NBRC32831_JX976013_v, 25 Unbelopsis_isabellina_NRRL1757_JN943789.1; TREE Imported_tree_0 = ((((((1:0.00478085,2:0.0):0.090994,((17:0.0,14:0.00473989):0.0,13:0.00475061):0.0316962):0.0135384,(((12:0.0,11:0.0):0.0,5:0.0190507):0.0293072,(((6:0.00236576,4:0.0):0.00829033,7:0.0164452):0.0135314,(15:0.00799708,((16:0.0,10:0.0):0.00611945,(8:0.0,(9:0.0,3:0.0):0.00237646):0.00942066):0.00839607):0.00627955):0.0):0.0122848):0.0301249,((((20:0.002844,19:0.0186522):0.018069,18:0.0312634):0.0462699,(22:0.0764744,21:0.109225):0.0251114):0.0186508,23:0.0719083):0.0212442):0.0624041,24:0.238006):0.096557,25:0.334563); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1385108918484; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 732463695697237421; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 2795035309714602802; mqVersion 275; checksumv 0 3 4120333517 null getNumChars 752 numChars 752 getNumTaxa 25 numTaxa 25 short true bits 15 states 15 sumSquaresStatesOnly 361387.0 sumSquares 361387.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 160; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1299 765; setLocation 264 84; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #732463695697237421 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #732463695697237421; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1139 698; setLocation 264 84; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #732463695697237421 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 832.1385108650296.1057475294936319203; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1139 698; setLocation 264 84; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #2795035309714602802 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1139 698; setLocation 264 84; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;