#NEXUS

BEGIN TAXA;
	TITLE Taxa;
	DIMENSIONS NTAX=24;
	TAXLABELS
		Pseudaegerita_matsushimae_IMI_266915cloneA1 Pseudaegerita_matsushimae_IMI_266915cloneB5 Pseudaegerita_matsushimae_IMI_266915cloneC2 Pseudaegerita_matsushimae_IMI_266915cloneC6 Pseudaegerita_matsushimae_IMI_266915cloneA4 Pseudaegerita_matsushimae_IMI_266915cloneA8 Trichoderma_yunnanense_CBS_121219_GU198243 Trichoderma_asperellum_CBS_433_97_isth26 Trichoderma_asperelloides_GJS_04_116_GU248412 Hypocrea_flaviconidia_GJS_99_49_isth900 Hypocrea_pezizoides_GJS_01_257_AY937438 Trichoderma_evansii_CBS_123079_EU883566 Trichoderma_hamatum_DAOM_167057_isth28 Trichoderma_pubescens_DAOM_166162_isth254 Trichoderma_koningii_GJS_96_117_isth95 Hypocrea_atroviridis_GJS_98_134_AF456887 Trichoderma_lieckfeldtiae_CBS_123050_EU856325 Hypocrea_neorufa_GJS_96_135_AF487670 Trichoderma_sp._NBRC_108035 Trichoderma_sp._NBRC_108036 Trichoderma_sp._NBRC_108034 Trichoderma_sp._NBRC_108031 Trichoderma_paucisporum_GJS_01_13_isth940 Trichoderma_theobromicola_DIS_85f_isth937 
	;
END;

BEGIN CHARACTERS;
	TITLE  'Fig33-TEF';
	DIMENSIONS  NCHAR=178;
	FORMAT DATATYPE = DNA GAP = - MISSING = ?;
	MATRIX
	Pseudaegerita_matsushimae_IMI_266915cloneA1    GCACAATTATGCCCGACAAATCTGTTCAGTTTTGTCTTTTCCAGCATCACCCGCTTTGCCTACCTACCCCTCCTTTGGCAGCAAAATTTTCTGGCTGCCTTGTTTGGCTTTTAGTGGGGGTAATTTTAGCAACCCCGCTATCGCCACTGCCTCCACCAATATTTTGTTCATTATGCTG
	Pseudaegerita_matsushimae_IMI_266915cloneB5    GCACAATTAAGCCCGACAAATCTGTTCAGTTTTGTCTTTTCCAGCATCACCCGCTTTGCCTACCTACCCCTCCTTTGGCAGCAAAATTTTCTGGCTGCCTTGTTTGGCTTTTAGTGGGGGTAATTTTAGCAACCCCGCTATCGCCACTGCCTCCACCAATATTTTGTTCATTATGCTG
	Pseudaegerita_matsushimae_IMI_266915cloneC2    GCACAATTATGCCCGACAAATCTGTTCAGTTTTGTCTTTTCCAGCATCACCCACTTTGCCTACCTACCCCTCCTTTGGCAGCAAAATTTTCTGGCTGCCTTGTTTGGCTTTTAGTGGGGGTAATTTTAGCAACCCCGCTATCGCCACTGCCTCCACCAATATTTTGTTCATTATGCTG
	Pseudaegerita_matsushimae_IMI_266915cloneC6    GCACAATTATGCCCGACAAATCTGTTCAGTTTTGTCTTTTCCAGCATCACCCGCTTTGCCTACCTACCCCTCCTTTGGCAGCAAAATTTTCTGGCTGCCTTGTTTGGCTTTTAGTGGGGGTAATTTTAGCAACCCCGCTATCGCCACTGCCTCCACCAACATTTTGTTCATTATGCTG
	Pseudaegerita_matsushimae_IMI_266915cloneA4    GCACAATTATGCCCGACAAATCTGTTCAGTTTTGTCTTTTCCAGCATCACCCGCTTTGCCTACCTACCCCTCCTTTGGCAGCAAAATTTTCTGGCTGCCTTGTTTGGCTTTTAGTGGGGGTAATTTTAGCAACCCCGCTATCGCCACTGCCTCCACCAATATTTTGTTCATTATGCTG
	Pseudaegerita_matsushimae_IMI_266915cloneA8    GCACAATTATGCCCGACAAATCTGTTCAGTTTTGTCTTTTCCAGCATCACCCGCTTTGCCTACCTACCCCTCCTTTGGCAGCAAAATTTTCTGGCTGCCTTGTTTGGCTTTTAGTGGGGGTAATTTTAGCAACCCCGCTATCGCCACTGCCTCCACCAATATTTTGTTCATTATGCTG
	Trichoderma_yunnanense_CBS_121219_GU198243     GCACAATTATGCCCGACAAATCTGTTCAGTTTTGTCTTTTCCAGCATCACCCGCTTTGCCTACCTACCCCTCCTTTGGCAGCAAAATTTTCTGGCTGCCTTGTTTGGCTTTTAGTGGGGGTAATTTTAGCAACCCCGCTATCGCCACTGCCTCCACCAATATTTTGTTCATTATGCTG
	Trichoderma_asperellum_CBS_433_97_isth26       GCACAATTATGCCCGACAATTCTGCTCAGTTTTGTCTTTTCCAGCGTCACCCGCTTTGTCTACCTACCCCTCCTTTGGCAGCAAAATTTTCTGGCTGCCTTGTTTGGCTTTTAGTGGGGGTAATTTTAGCAACCCCGCTATCGCCACTGCCTCCACCAATTTTTTGTTCATTATGCTG
	Trichoderma_asperelloides_GJS_04_116_GU248412  GCACAATTATGCCCGACAATTCTGTTCAGTTTTGTCTTTTTCAGCATCACCCGCTTTGCCTACCTACCCCTCCTTTGGCAGCAAAATTTTCTCGCTGCCTTGTTTGGCTTTTAGTGGGGGTAATTTTGGCAACCCCACTATCGCCACTGTCTCCACCAATTCTTTGTTCATTATGCTG
	Hypocrea_flaviconidia_GJS_99_49_isth900        GCACAATTGTGTCCGACAATACTGTTTAGTCTTGTCTTTCCCAGCATCGCCCGCTTTGCCTACCTACCCCTCCTTTGGCAGCAAAATTTTCTGGCTGCCTTGTTTGGTTTTTAGTGGGGGCAATGTTAGCAACCCCGCTATCGCCACTGGCTCCAACAAGTTTGGGTTCATGGTGCTA
	Hypocrea_pezizoides_GJS_01_257_AY937438        GCACAATTGTGTCCGACAATTCTGTTCAGTCTTGTCTTTCCCAGCATGGCCCGCTTTGCCTATCTACCCCTCCTTTGGCCGCAAAATTTTCTTGCTGCCTTGTTTGGTTTTTAGTGGGGATAACGTTAGCAACCCCGCTATCGCCACTGCCTCCAACAAATTTTAATTCATTTTATTA
	Trichoderma_evansii_CBS_123079_EU883566        GCACAATTGTGTCCGACAATTCTGTTCAGTCTTGTCTTTTCCAGCATTGCCCGCTTTGCCTACCTACCCCTCCTTTGGCAGCAAAATTTTCTGGCTGCCTTGTTTGGTTTTTAGTGGGGGTAATTTTAGCAACCCCGCTATCGTCACTGTCTCCGACAATATTTGGTTCATTGTACTA
	Trichoderma_hamatum_DAOM_167057_isth28         GCACAATTGTGCCAGACAATTCTGTTCAGTCTTGTCTTTTCAAGCATCGCCCGCTTTGCCTACCTACCCCTCCTTTGGCAGCAAAATTTTCTGGCTGCCTTGGTTGGTTTTTAGTGGGGGCAATTTTAGTGACCCCGCCATCGCCACTGTCTCCAACAATTGCTGGTTCATTGTGCTA
	Trichoderma_pubescens_DAOM_166162_isth254      GCACAATTGTGTCCGACAATTCTGTTCAGTTTTGTCTTTTCAGGCATTGCCCGCTTTGCCTACCTACCCCTCCTTTGGCAGCAAAATTTTCTGGCTGCCTTGTTTGGTTTTTAGTGGGGGCAATTTTAGCAACCCCGCTATTGCCACTGTCTCCAACAATTGTTGGTTCATTGTACTA
	Trichoderma_koningii_GJS_96_117_isth95         ACACAATCGTGTCCGACAATTCTGTTCAGTCTTGTCTCTTGCAGCATCACCCGCTTTGCCTGTCTACCCCTCCTTTGGCAGCAAAATTTTTCTGCTGCATCGTTTGGTTTTTAGTGGGGGTAATTTTAGCAACCCCGCTATCGCCGCTGTCTCCAACAATGCCTTATTCATTGTGCTG
	Hypocrea_atroviridis_GJS_98_134_AF456887       GCACAATCGTGCCCGACAATTCTGTCCAGTCTTGTCTTTTGCAGCATCACCCGCTTTACCTGTCTACCCCTCCTTTGGCAGCAAAATTTTCTGGCTGCCTTGCTTGGCTTTTAGTGGGGGCAATTTTTGCAACCCCGCTATCGCGACTGTCGTCAACGATTGTTGGTTCATTGTGCTA
	Trichoderma_lieckfeldtiae_CBS_123050_EU856325  GCACAATTGTGCCCGACAATTCTGTTCAGAATTGTCTTTTCCAGCATCACCCGCTTTACCTGTCTACCCCTCCTTTGGCAGCAAAATTTTCTGGCTGCCTTGTTTGGCTTTTAGTGGGGGTAATTTTAGCAACCCCGCTATTGCCACCGTCTCCAGCAATTTTCGGTTCATCGTGCTG
	Hypocrea_neorufa_GJS_96_135_AF487670           GTATTCATGTGCGCGACGATTCTGTTCAGCTTTGTCTTTTCCACAATCACCCGCTTTGCCTGTCTACCCCTCCTTTGGCGGTGAAATTTTCTGGCTGCCTTGTTTGGTTTTTAGTGGGGGTAATCTTAGCAACCCCGCTATCGCCACTGTCTCCAACAATTTTTGATTCATTGGGCTG
	Trichoderma_sp._NBRC_108035                    GCTCAATTGCGCCCGACAAATCTGCTCAGTCTTGTCTTTTTCAGCATCTCCCGCTTTGATCATCTACCCCTCCTTTGGCAGCAAAATTTTCTGGCTGCCTTACTTGGCTTTTAGTGGGGGTAATTTTAGTAACCCCGCTATCGCCACTGTTTCCAACAATTTTCGGTTCATTGTGCTG
	Trichoderma_sp._NBRC_108036                    GCTCAATTGCGCCCGACAAATCTGCTCAGTCTTGTCTTTTTCAGCATCTCCCGCTTTGATCATCTACCCCTCCTTTGGCAGCAAAATTTTCTGGCTGCCTTACTTGGCTTTTAGTGGGGGTAATTTTAGTAACCCCGCTATCGCCACTGTTTCCAACAATTTTCGGTTCATTGTGCTG
	Trichoderma_sp._NBRC_108034                    GCTCAATTGCGCCCGACAAATCTGCTCAGTCTTGTCTTTTTCAGCATCTCCCGCTTTGATCATCTACCCCTCCTTTGGCAGCAAAATTTTCTGGCTGCCTTACTTGGCTTTTAGTGGGGGTAATTTTAGTAACCCCGCTATCGCCACTGTTTCCAACAATTTTCGGTTCATTGTGCTG
	Trichoderma_sp._NBRC_108031                    GCTCAATTGCGCCCGACAAATCTGCTCAGTCTTGTCTTTTTCAGCATCTCCCGCTTTGATCATCTACCCCTCCTTTGGCAGCAAAATTTTCTGGCTGCCTTACTTGATTTTTAGTGGGGGTAATTTTAGTAACCCCGCTATCGCCACTGTTTCCAACAATTTTCGGTTCATTGTGCTG
	Trichoderma_paucisporum_GJS_01_13_isth940      GCACAATTGTGTCCGACGATTCTGCTTAGTCTTGTCTTTTCCAGTGTCTCCCGCTTTGCCCTTCTACCCCTCCTTTGGCAGCAAAATTTTCTGGCTGCCTTGTTTGGCTTTTAGTGGGGGTAATTTTAGCAACCCCGCTATCGCCACTGTCTCCAACAGTTCTCGGTTCATTGTGCTG
	Trichoderma_theobromicola_DIS_85f_isth937      GCACAATTGTGTCCGACAATTCTGTTTAGTCTTGTCTTTTCCAGCATCTCCCGCTTTGCCCTTCTACCCCTCCTTTGGCAGCAAAATTTTCTGGCTGCCTTGTTTGGCTTTTAGTGGGGGTAATTTTAGCAACCCCGCTATCGCCACTGTCTCCAACAGTTTTCGGTTCATTGTGCTG
;
END;


BEGIN TREES;
	Title Fig33_TEFt;
	LINK Taxa = Taxa;
	TRANSLATE
		1 Pseudaegerita_matsushimae_IMI_266915cloneA1,
		2 Pseudaegerita_matsushimae_IMI_266915cloneB5,
		3 Pseudaegerita_matsushimae_IMI_266915cloneC2,
		4 Pseudaegerita_matsushimae_IMI_266915cloneC6,
		5 Pseudaegerita_matsushimae_IMI_266915cloneA4,
		6 Pseudaegerita_matsushimae_IMI_266915cloneA8,
		7 Trichoderma_yunnanense_CBS_121219_GU198243,
		8 Trichoderma_asperellum_CBS_433_97_isth26,
		9 Trichoderma_asperelloides_GJS_04_116_GU248412,
		10 Hypocrea_flaviconidia_GJS_99_49_isth900,
		11 Hypocrea_pezizoides_GJS_01_257_AY937438,
		12 Trichoderma_evansii_CBS_123079_EU883566,
		13 Trichoderma_hamatum_DAOM_167057_isth28,
		14 Trichoderma_pubescens_DAOM_166162_isth254,
		15 Trichoderma_koningii_GJS_96_117_isth95,
		16 Hypocrea_atroviridis_GJS_98_134_AF456887,
		17 Trichoderma_lieckfeldtiae_CBS_123050_EU856325,
		18 Hypocrea_neorufa_GJS_96_135_AF487670,
		19 Trichoderma_sp._NBRC_108035,
		20 Trichoderma_sp._NBRC_108036,
		21 Trichoderma_sp._NBRC_108034,
		22 Trichoderma_sp._NBRC_108031,
		23 Trichoderma_paucisporum_GJS_01_13_isth940,
		24 Trichoderma_theobromicola_DIS_85f_isth937;
	TREE PAUP_1 = ((15:0.098336,16:0.071053):0.0053795,((17:0.047692,18:0.118097):0.0,(((23:0.028882,24:0.0):0.02364,(22:0.011344,(21:0.0,(19:0.0,20:0.0):0.0):0.0):0.069914):0.017259,(((10:0.043014,11:0.077966):0.017706,(12:0.026065,(13:0.046894,14:0.025311):0.017352):0.0):0.02849,(9:0.030875,(8:0.017319,(1:0.0,(5:0.0,(7:0.0,(4:0.005613,(2:0.005651,(3:0.005619,6:0.0):0.0):0.0):0.0):0.0):0.0):0.011799):0.003894):0.03281):0.005493):0.005662):0.0053795)[% ] [% ] [%  setBetweenBits = selected ];
END;