#NEXUS [written Thu Jan 15 16:13:08 EST 2015 by Mesquite version 2.71 (build 514) at matthews-pro.ad.ufl.edu/10.248.24.70] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=47; TAXLABELS Athelia_epiphylla_GU187676 Austroboletus_subvirens_JN378458 Austroboletus_eburneus_JX889708 Boletellus_projectellus_AY879116 Boletus_shichianus_DQ408145 Buchwaldoboletus_lignicola_JQ327040 Boletinellus_merulioides_DQ056287 Boletus_edulis_GU187682 Bondarcevomyces_taxi_GU187683 Calostoma_cinnabarinum_AY879117 Chalciporus_piperatus_GU187690 Coniophora_puteana_GU187687 Coniophora_prasinoides_GU187691 Coniophora_arida_GU187684 Coniophora_arida_GU187685 'Coniophora puteana XM_007764593' Coniophora_puteana_GU187693 Coniophora_puteana_AM293170 Coniophora_olivacea_GU187689 Coniophora_olivacea_AM747623 Coniophora_olivacea_AM747607 Coniophora_olivacea_AM747615 Coniophora_prasinoides_GU18769 Coniophora_cerebella_GU187692 Coniophora_marmorata_GU187688 Sedecula_pulvinata_KP033141 Gomphidius_roseus_GU187702 Gyrodontium_sacchari_GU187703 Gyrodon_lividus_GU187701 Hydnomerulius_pinastri_GU187708 Hygrophoropsis_aurantiaca_AY883427 Leucogyrophana_arizonica_GU187714 Leucogyrophana_lichenicola_GU187715 Leucogyrophana_olivascens_GU187717 Leucogyrophana_romellii_GU187720 Phlebopus_portentosus_GU187735 Porphyrellus_porphyrosporus_GU187734 Pseudomerulius_aureus_GU187731 Pseudomerulius_curtisi_GU187725 Rhizopogon_nigrescens_GU187744 Rhopalogaster_transversarium_DQ219225 Serpula_lacrymans_GU196521 Suillus_bresadolae_GU187746 Suillus_pictus_AY883429 Strobilomyces_sp_KF112257 Tapinella_atrotomentosa_GU187757 Strobilomyces_sp_KF112258 ; END; BEGIN CHARACTERS; TITLE TEF1a_DNA_dataset; DIMENSIONS NCHAR=440; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Athelia_epiphylla_GU187676 -----------------------------------------------TACCGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCCCTCTTGGCGTTCACCCTCGGTGTGCGTCAGCTCATCGTCGCTGTCAACAAGATGGACACCACCAAGTGGAGCGAGGACCGTTTCAACGAAATTATCAAGGAAACGTCTGGATTCATCAAGAAGGTTGGCTACAACCCCAAGGCTGTCGCCTTCGTCCCCATCTCAGGATGGCACGGAGACAACATGTTGGAGGAGTCCGTCAACATGCCCTGGTTCAAGGGCTGGACCAAGGAGACCAAGGCTGGTGTTGTCAAGGGAAAGACTCTCCTCGATGCTATCGATGCCATCGAGCCCCCTGTCCGA----------------------------------- Austroboletus_subvirens_JN378458 ACGGGTACCTCTCAGGCCGACTGTGCCATCCTCATCATCGCCGGAGGTACCGGTGAGTTTGAGGCTGGTATCTCCAAGGATGGTCAGACTCGTGAACACGCTCTTCTGGCCTTCACGCTCGGTGTGCGTCAGCTCATCGTTGCTGTAAACAAGATGGACACGACCAAGTGGAGCGAGGACCGTTTCAACGAAATCGTCAAGGAAACCTCGACCTTCATCAAGAAGGTCGGCTACAACCCCAAGGCTGTTGCTTTCGTGCCCATCTCCGGCTGGCATGGTGACAACATGTTGGAGGAGTCCAGCAACATGCCCTGGTACAAGGGTTGGACCAAGGAAAACAAGGGCGGTGTCGTCAAAGGAAAGACGCTCCTTGATGCCATTGACGCCATCGAACCTCCCGTTCGTCCTTCCGACAAACCCCTTCGTCTCCCTCTCCAGGA Austroboletus_eburneus_JX889708 ACAGGTACCTCCCAGGCCGACTGTGCCATCCTCATCATTGCCGGTGGTACCGGTGAGTTTGAGGCAGGTATCTCCAAGGATGGTCAGACCCGTGAACACGCTCTTCTGGCCTTCACGCTCGGTGTGCGTCAGCTCATCGTTGCTGTTAACAAGATGGACACAACCAAGTGGAGCGAGGACCGCTTCAATGAAATCATCAAGGAAACCTCGACCTTCATCAAGAAGGTTGGCTATAACCCCAAGGCTGTTGCTTTCGTGCCCATCTCCGGCTGGCATGGTGACAACATGTTGGAGGAGTCCGCCAACATGCCCTGGTACAAGGGCTGGACCAAGGAGACCAAGGGTGGTGTCGTCAAAGGAAAGACCCTCCTTGATGCCATTGATGCCATCGAGCCCCCTACTCGTCCTTCCGACAAGCCTCTTCGTCTCCCCCTCCAGGA Boletellus_projectellus_AY879116 -----------------------------------------------TACCGGTGAGTTCGAGGCTGGTATCTCCAAGGACGGTCAGACCCGTGAACACGCTCTACTGGCATTCACCCTCGGTGTGCGCCAGCTCATCGTTGCTGTAAACAAGATGGACACGACCAAGTGGAGCGAGGATCGCTTCAACGAAATTATCAAGGAAACTTCGACTTTCATTAAGAAGGTCGGCTACAACCCCAAGGCTGTCGCCTTTGTGCCCATCTCTGGCTGGCATGGTGACAACATGCTGGAGGAGTCCCCTAACATGCCCTGGTATAAGGGCTGGACAAAGGAGACCAAGGGTGGTGTCACCAAGGGAAAGACGCTCCTCGATGCCATCGATGCCATCGAGCCCCCTGTTCGT----------------------------------- Boletus_shichianus_DQ408145 -----------------------------------------------TACCGGTGAGTTCGAGGCTGGTATCTCCAAGGACGGTCAGACCCGTGAACACGCTCTCTTGGCATTCACCCTCGGTGTGCGTCAGCTCATCGTCGCTGTAAATAAGATGGACACCACCAAGTGGAGCGAGGATCGCTTCAATGAAATTGTCAAGGAAACCTCGACTTTCATTAAGAAGGTTGGCTACAATCCAAAGGCTGTCGCCTTTGTCCCTATCTCTGGCTGGCATGGCGACAACATGCTGGAAGAGTCTCCTAATATGCCCTGGTACAAGGGCTGGACAAAGGAGACCAAGGGTGGTGCCGCCAAGGGAAAGACACTCCTCGATGCCATCGATGCCATCGAGCCTCCTGTTCGT----------------------------------- Buchwaldoboletus_lignicola_JQ327040 ACCGGTACCTCCCAGGCCGACTGTGCCGTCCTCATCATTGCCGGTGGTACCGGTGAGTTTGAGGCTGGTATCTCCAAGGACGGTCAGACCCGCGAGCATGCCCTTTTGGCGTTCACCCTCGGTGTCCGCCAACTCATTGTCGCTGTCAACAAGATGGACACGACCAAGTGGAGCGAGGACCGCTTCAACGAAATTATCAAGGAAACCTCCACCTTCATCAAGAAGGTCGGTTACAACCCCAAGGCCGTCGCTTTCGTCCCTATCTCTGGCTGGCACGGTGACAACATGTTGGAGGAGTCCCCCAACATGCCTTGGTACAAGGGTTGGACCAAGGAGACCAAGGGTGGTGTCGTCAAGGGCAAGACCCTCCTCGATGCCATCGATGCCATTGAACCTCCTGTCCGTCCTTCCGACAAGCCCCTTCGACTCCCTCTCCAGGA Boletinellus_merulioides_DQ056287 -----------------------------------------------TACTGGTGAGTTCGAGGCCGGTATTTTCAAGGACGGTCAAACCCGTGAACACGCCCTATTGGCGTTCACTCTCGGTGTTCGTCAATTTATCGTTGCCGTCAACAAGATGGACACTACCAAGTGGAGTGAGGACCGTTTCAACGAAATTATCAAAGAAACCTCCACCTTCATTAAGAAGGTCGGTTACAACCCCAAGGCCGTCGCCTTCGTCCCCATCTCTGGCTGGCACGGTGACAACATGTTGGAGGAGTCCCCCAACATGCCATGGTACAAGGGCTGGACCAAGGAGACCAAGGGTGGTGTCGTCAAGGGTAAGACCCTCCTCGACGCTATCGACGCCATCGAGCCTCCTGTCCGT----------------------------------- Boletus_edulis_GU187682 -----------------------------------------------TACCGGTGAGTTCGAGGCTGGTATCTCCAAGGACGGTCAAACCCGTGAACATGCTCTTCTGGCGTTCACCCTTGGCGTGCGTCAACTCATTGTCGCTGTAAACAAGATGGACACGACCAAGTGGAGCGAGGACCGCTTCAACGAAATCATCAAGGAAACCTCGACGTTTATCAAGAAGGTCGGCTACAACCCCAAGGCTGTCGCTTTTGTACCGATCTCCGGCTGGCATGGTGACAACATGTTGGAGGAATCCCCCAACATGACTTGGTACAAGGGATGGACCAAGGAGATCAAGGGTGGTGTCGTCAAGGGCAAGACCCTCCTCGATGCCATTGATGCTATCGAACCTCCTGTTCGT----------------------------------- Bondarcevomyces_taxi_GU187683 -----------------------------------------------TACTGGTGAATTCGAAGCTGGTATCTCCAAGGATGGTCAGACCCGTGAGCACGCCCTTTTGGCGTTCACTCTTGGTGTCCGACAGCTCATTGTCGCCATTAATAAGATGGACACCACTAAGTGGAGTGAGGATCGCTTCAACGAAATCGTTAAGGAAACTTCTACCTTCATTAAGAAGGTCGGTTACAACCCCAAGGCTGTGGCTTTCGTCCCCATCTCTGGATGGCACGGTGATAACATGTTGGAGGAGTCTGAGAACATGCCCTGGTACAAGGGTTGGTCCAAGGAAAATAAGGGTGGTGTTGTCAAGGGCAAAACTTTGCTCGATGCCATTGACGCCATCGAGCCCCCTGTTCGT----------------------------------- Calostoma_cinnabarinum_AY879117 -----------------------------------------------TACTGGCGAGTTTGAGGCTGGTATCTCTAAAGATGGTCAGACGCGTGAGCACGCCCTCCTGGCGTTCACTCTCGGTGTCCGTCAGCTCATTGTCGCCGTCAACAAGATGGACACTACCAAGTGGAGCGAGGACCGTTTCAATGAAATCGTAAAGGAAACCTCCACCTTCATCAAGAAGGTCGGATACAACCCAAAGGCTGTCGCATTCGTCCCTATCTCCGGCTGGCATGGTGACAACATGCTGGAGGAGTCTCCCAATATGACATGGTACAAGGGCTGGACAAAGGACATCAAGGGCGGTTCCACGAAGGGCAAGACCCTCCTCGATGCCATCGACGCTATTGAGCCCCCTGTTCGT----------------------------------- Chalciporus_piperatus_GU187690 ACGGGTACCTCCCAGGCTGACTGTGCAATCCTTATCATTGCCGGTGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGACGGTCAAACCCGTGAGCACGCCCTCCTGGCGTTCACCCTCGGTGTCCGTCAGCTCATCGTCGCTGTCAACAAGATGGACACGACCAAGTGGAGCGAAGACCGTTTCAACGAAATTATCAAGGAAACCTCCACCTTCATCAAGAAGGTCGGTTACAACCCCAAGGCCGTTGCTTTCGTCCCTATCTCCGGCTGGCACGGTGACAACATGTTGGAGGAGTCCCCCAACATGCCATGGTACAAGGGCTGGACCAAGGAGAACAAGAGTGGTGTCGTCAAGGGCAAGACCCTCCTTGATGCCATTGATGCCATTGAACCCCCTTCCCGTCCTTCCGACAAGCCCCTTCGTCTCCCTCTTCAGGA Coniophora_puteana_GU187687 ACGGGTACTTCCCAGGCTGATTGCGCCATCCTCATCATCGCCGGTGGTACCGGTGAGTTCGAGGCTGGTATCTCCAAGGACGGCCAGACTCGCGAGCACGCCCTCTTGGCCTTCACTCTTGGTGTTCGTCAGCTCATCGTCGCCGTCAACAAGATGGACACTACCAAGTGGAGCGAAGACCGTTTCAATGAAATCATCAAGGAGACTTCGACTTTCATCAAGAAGGTCGGATACAACCCCAAGGCTGTCGCCTTCGTTCCTATCTCTGGCTGGCATGGTGACAACATGTTGGAGGAGTCCGCCAACATGCCTTGGTACAAGGGTTGGACTAAGGAGAACAAGTCTGGCACTGTCAAGGGCAAGACTCTTTTGGACGCYATCGATGCTATTGAGCCCCCTGTCCGCCCCTCCGATAAGCCCCTTCGCCTTCCTCTCCAGGA Coniophora_prasinoides_GU187691 ACTGGTACCTCCCAGGCTGACTGTGCCATCCTCATCATCGCCGGTGGTACCGGTGAGTTCGAGGCTGGTATCTCGAAGGACGGTCAGACTCGCGAGCACGCCCTCTTGGCCTTCACCCTCGGTGTCCGTCAGCTCATCGTCGCCGTCAACAAGATGGACACTACCAAGTGGAGCGAAGACCGTTTCAACGAAATTATCAAGGAGACTTCCACCTTCATCAAGAAGGTCGGCTACAACCCCAAGGCTGTCGCCTTCGTTCCTATCTCTGGCTGGCACGGTGACAATATGTTGGAGGAGTCCCCCAACATGCCGTGGTACAAAGGTTGGACCAAGGAGAACAAGAGTGGAGCTGTCAAGGGCAAGACCCTCTTGGATGCCATCGATGCCATTGAGCCCCCTGTTCGTCCCTCCGACAAGCCCCTCCGCCTTCCTCTCCAGGA Coniophora_arida_GU187684 ACTGGTACCTCCCAGGCTGACTGTGCCATCCTCATTATTGCTGGTGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGTCAGACTCGCGAGCACGCCCTCTTGGCCTTCACCCTTGGTGTCCGCCAGCTCATCGTCGCCGTCAACAAGATGGACACTACCAAGTGGAGCGAAGACCGCTTCAACGAAATTATCAAGGAGACCTCTACCTTCATCAAGAAGGTCGGCTACAACCCTAAAGCTGTCGCCTTCGTCCCCATCTCCGGCTGGCACGGCGACAACATGTTGGAGGAGTCTGTCAACATGCCCTGGTACAAGGGATGGACGAAGGAAACCAAGGGTGGTGTTGCCAAGGGAAAGACCCTCTTGGATGCTATTGATGCTATTGAGCCTCCTGTTCGTCCCTCCGATAAGCCTCTCCGTCTTCCTCTCCAGGA Coniophora_arida_GU187685 -----------------------------------------------TACTGGCGAGTTCGAGGCTGGTATCTCCAAAGATGGTCAGACTCGCGAGCACGCCCTCTTGGCCTTCACCCTTGGTGTCCGCCAGCTCATCGTCGCCGTCAACAAGATGGACACTACCAAGTGGAGCGAAGACCGCTTCAACGAAATTATCAAGGAGACCTCTACCTTCATCAAGAAGGTCGGCTATAACCCTAAGGCTGTCGCCTTCGTCCCCATCTCCGGCTGGCACGGTGACAACATGTTGGAGGAGTCTGCCAACATGCCCTGGTACAAGGGATGGACGAAGGAAACCAAGGGTGGTGTTGCCAAGGGAAAGACCCTCTTGGATGCTATTGATGCTATTGAGCCTCCTGTTCGT----------------------------------- 'Coniophora puteana XM_007764593' ACTGGCACTTCCCAGGCTGATTGCGCCATCCTCATCATCGCCGGTGGTACCGGTGAGTTCGAGGCTGGTATTTCCAAGGATGGTCAGACTCGCGAGCACGCCCTCTTGGCCTTCACTCTTGGTGTTCGTCAGCTCATCGTCGCCGTCAACAAGATGGACACTACCAAGTGGAGCGAAGACCGTTTCAACGAGATCATCAAGGAGACTTCGACCTTCATCAAGAAGGTCGGCTACAACCCCAAGGCTGTCGCATTCGTTCCTATCTCTGGCTGGCACGGTGACAACATGTTGGAGGARTCCGCCAACATGCCTTGGTACAAGGGTTGGACTAAGGAGAACAAGTCTGGCACTGTCAAGGGCAAGACTCTCTTGGACGCCATCGACGCTATTGAGCCCCCTGTCCGCCCCTCCGACAAACCTCTTCGCCTTCCTCTCCAGGA Coniophora_puteana_GU187693 -----------------------------------------------TACCGGTGAGTTCGAGGCTGGTATTTCCAAGGATGGTCAGACTCGCGAGCACGCCCTCTTGGCCTTCACTCTTGGTGTTCGTCAGCTCATCGTCGCCGTCAACAAGATGGACACTACCAAGTGGAGCGAAGACCGTTTCAACGAGATCATCAAGGAGACTTCGACCTTCATCAAGAAGGTCGGCTACAACCCCAAGGCTGTCGCATTCGTTCCTATCTCTGGCTGGCACGGTGACAACATGTTGGAGGAGTCCGCCAACATGCCTTGGTACAAGGGTTGGACTAAGGAGAACAAGTCTGGCACTGTCAAGGGCAAGACTCTCTTGGACGCCATCGACGCTATTGAGCCCCCTGTCCGC----------------------------------- Coniophora_puteana_AM293170 ACTGGTACTTCCCAGGCTGATTGCGCCATCCTCATCATTGCCGGTGGTACCGGTGAGTTCGAGGCTGGTATCTCCAAGGACGGTCAGACTCGCGAGCACGCCCTCTTGGCCTTTACTCTTGGTGTTCGTCAGCTCATCGTCGCTGTCAACAAGATGGACACTACCAAGTGGAGCGAAGACCGTTTCAACGAAATTATCAAGGAGACTTCGACCTTCATCAAGAAGGTTGGCTACAACCCCAAGGCTGTTGCCTTCGTTCCTATCTCTGGTTGGCACGGTGACAACATGTTGGAGGAGTCCGCCAACATGCCTTGGTACAAGGGTTGGACTAAGGAGGGCAAGGCTGGCACTGTCAAGGGCAAGACCCTCTTGGACGCCATTGATGCCATTGAGCCCCCTGTTCGCCCCTCCGACAAACCCCTTCGCCTTCCTCTCCAGGA Coniophora_olivacea_GU187689 ACTGGTACCTCCCAGGCTGACTGTGCCATCCTCATCATCGCCGGTGGTACCGGTGAGTTCGAGGCTGGTATCTCGAAGGACGGTCAGACTCGCGAGCACGCCCTCTTGGCCTTCACCCTCGGTGTCCGTCAGCTCATCGTCGCCGTCAACAAGATGGACACTACCAAGTGGAGCGAAGACCGTTTCAACGAAATTGTCAAGGAGACTTCCACCTTCATCAAGAAGGTCGGCTACAACCCCAAGGCTGTCGCCTTCGTTCCTATCTCTGGCTGGCACGGTGACAATATGTTGGAGGAGTCCCCCAACATGCCGTGGTATAAAGGTTGGACCAAGGAGAACAAGAGTGGAGCTGTCAAGGGCAAGACCCTCTTGGATGCCATCGATGCCATTGAGCCCCCTGTTCGTCCCTCCGACAAGCCCCTCCGCCTTCCTCTCCAGGA Coniophora_olivacea_AM747623 ACTGGCACCTCCCAGGCTGACTGTGCCATCCTCATCATCGCCGGTGGTACCGGTGAGTTCGAGGCTGGTATCTCAAAGGATGGTCAGACTCGCGAGCACGCTCTCTTGGCCTTCACCCTCGGTGTCCGTCAGCTCATCGTCGCCGTCAACAAGATGGACACTACCAAGTGGAGCGAAGACCGTTTCAACGAAATTGTCAAGGAAACTTCCACCTTCATCAAGAAGGTCGGCTACAACCCCAAGGCTGTCGCCTTCGTTCCTATCTCTGGCTGGCACGGTGACAATATGTTGGAGGAGTCCGTCAACATGCCGTGGTACAAAGGTTGGTCTAAGGAGAGCAAGGGTGGAGTTGTCAAGGGCAAGACCCTCTTGGATGCCATCGATGCCATCGAGCCCCCTGTTCGTCCCTCCGACAAGCCCCTCCGTCTTCCTCTCCAGGA Coniophora_olivacea_AM747607 ACTGGTACCTCCCAGGCTGACTGTGCTATCCTCATCATCGCCGGTGGTACTGGTGAATTTGAGGCCGGTATCTCGAAAGACGGTCAGACTCGCGAGCACGCCCTCTTGGCCTTCACTCTTGGTGTCCGTCAGCTCATCGTCGCCGTCAACAAGATGGACACTACCAAGTGGAGCGAAGACCGTTTCAACGAAATTGTCAAGGAGACTTCTACCTTCATCAAGAAGGTTGGCTACAACCCCAAGGCTGTGGCCTTCGTTCCTATCTCTGGCTGGCACGGTGACAACATGTTGGAGGAGTCCGCTAACATGCCGTGGTACAAAGGCTGGTCTAAGGAGAACAAGGGCGGAGCTGTCAAGGGCAAGACTCTCTTGGATGCCATCGATGCCATTGAGCCCCCTGTTCGTCCCTCCGACAAGCCCCTCCGTCTTCCTCTCCAGGA Coniophora_olivacea_AM747615 -----------------------------------------------TACCGGTGAGTTCGAGGCTGGTATCTCGAAGGATGGACAGACTCGCGAGCACGCCCTCTTGGCCTTCACTCTCGGTGTCCGTCAGCTCATCGTCGCCGTCAACAAGATGGACACTACCAAGTGGAGCGAAGACCGTTTCAACGAAATTGTCAAGGAGACTTCCACCTTCATCAAGAAGGTCGGCTACAACCCCAAGGCTGTCGCCTTCGTTCCTATCTCTGGCTGGCACGGTGACAATATGTTGGAGGAGTCCGCCAACATGCCGTGGTACAAAGGTTGGTCTAAGGAGAACAAGGCTGGAGTTGTCAAGGGCAAGACCCTCTTGGATGCCATCGATGCCATTGAGCCCCCTGTTCGT----------------------------------- Coniophora_prasinoides_GU18769 -----------------------------------------------TACCGGTGAGTTCGAGGCTGGTATCTCGAAGGACGGTCAGACTCGCGAGCACGCCCTCTTGGCCTTCACCCTCGGTGTCCGTCAGCTCATCGTCGCCGTCAACAAGATGGACACTACCAAGTGGAGCGAAGACCGTTTCAACGAAATTATCAAGGAGACTTCCACCTTCATCAAGAAGGTCGGCTACAACCCCAAGGCTGTCGCCTTCGTTCCTATCTCTGGCTGGCACGGTGACAATATGTTGGAGGAGTCCCCCAACATGCCGTGGTACAAAGGTTGGACCAAGGAGAACAAGAGTGGAGCTGTCAAGGGCAAGACCCTCTTGGATGCCATCGATGCCATTGAGCCCCCTGTTCGT----------------------------------- Coniophora_cerebella_GU187692 ACTGGCACTTCCCAGGCTGATTGCGCCATCCTCATCATCGCCGGTGGTACCGGTGAGTTCGAGGCTGGTATTTCCAAGGATGGTCAGACTCGCGAGCACGCCCTCTTGGCCTTCACTCTTGGTGTTCGTCAGCTCATCGTCGCCGTCAACAAGATGGACACTACCAAGTGGAGCGAAGACCGTTTCAACGAGATCATCAAGGAGACTTCGACCTTCATCAAGAAGGTCGGCTACAACCCCAAGGCTGTCGCATTCGTTCCTATCTCTGGCTGGCACGGTGACAACATGTTGGAGGAATCCGCCAACATGCCTTGGTACAAGGGTTGGACTAAGGAGAACAAGTCTGGCACTGTCAAGGGCAAGACTCTCTTGGACGCCATCGACGCTATTGAGCCCCCTGTCCGCCCCTCCGACAAACCTCTTCGCCTTCCTCTCCAGGA Coniophora_marmorata_GU187688 -----------------------------------------------TACCGGTGAGTTTGAGGCCGGTATCTCCAAGGATGGTCAGACTCGCGAGCACGCCCTCCTGGCCTTCACTCTCGGTGTTCGTCAGCTCATCGTTGCGGTCAACAAGATGGACACTACCAAGTGGAGTGAAGACCGTTTCAACGAAATTATCAAGGAGACTTCCACCTTCATCAAGAAGGTTGGCTACAACCCGAAGGCTGTTGCCTTCGTTCCTATCTCCGGCTGGCACGGCGACAACATGTTGGAGGAGTCTGCCAACATGCCATGGTACAAGGGTTGGACGAAGGAGAACAAGAGTGGCGTTGTCAAGGGCAAGACTCTGCTTGATGCTATTGACGCCATTGAGCCTCCTGTCCGT----------------------------------- Sedecula_pulvinata_KP033141 ACCGGTACTTCCCAGGCTGACTGTGCTGTCCTCATCATTGCCGGTGGTACTGGTGAGTTCGAGGCCGGTATCTCCAAGGACGGACAGACTCGCGAGCATGCCCTCTTGGCCTTCACGCTCGGTGTCCGTCAGCTCATCGTCGCTGTCAACAAGATGGACACTACCAAGTGGAGCGAAGATCGTTTCAACGAAATTGTCAAGGAAACTTCCACTTTCATTAAGAAAGTTGGTTACAACCCCAAGGCCGTCGCGTTCGTTCCAATTTCCGGCTGGCACGGCGACAACATGTTGGAGGAGTCCCCCAACATGCCATGGTATAAGGGTTGGACCAAGGAGGGCAAGGCTGGAGTCGTCAAAGGCAAGACCCTCTTGGACGCCATTGACGCCATTGAGCCCCCTGTCCGTCCCTCCGACAAGCCCCTCCGTCTTCCTCTTCAGGA Gomphidius_roseus_GU187702 -----------------------------------------------TACTGGTGAATTCGAGGCTGGTATCTCCAAGGACGGTCAGACCCGTGAGCACGCGCTCTTAGCGTTCACTCTTGGCGTCCGTCAGCTCATCGTTGCTGTCAACAAAATGGACACAACCAAGTGGAGCGAGGACCGTTTCAATGAAATTATCAAAGAAACTTCCACTTTCATCAAGAAGGTCGGCTACAACCCCAAGAGCGTTGCATTTGTCCCCATTTCTGGCTGGCATGGTGATAACATGTTGGAGGAGTCCCCCAACATGCCATGGTACAAGGGTTGGACCAAGGAGACAAAGGGTGGAGTTATCAAAGGAAAAACTCTTCTCGATGCCATTGATGGAATCGAACCTCCTGCTCGC----------------------------------- Gyrodontium_sacchari_GU187703 -----------------------------------------------GACTGGTGAATTCGAGGCTGGTATCTCCAAGGATGGCCAGACTCGTGAGCACGCCCTTCTGGCGTTCACTCTCGGTGTACGGCAACTCATTGTCGCCGTCAACAAGATGGACACCACGAAGTGGAGCGAGGACCGTTTCAACGAAATCGTTAAGGAAACCTCCACCTTCATTAAGAAGGTCGGTTACAACCCGAAGGCTGTTGCATTTGTGCCCATCTCTGGCTGGCACGGCGACAATATGCTGGAAGAGTCTGAAAACATGCCTTGGTACAAGGGATGGACGAAGGAAATCAAGGGTGGGGTTGTCAAAGGCAAGACCCTCTTGGATGCCATCGATGCCATCGAGCCTCCTGTCCGT----------------------------------- Gyrodon_lividus_GU187701 -----------------------------------------------TACCGGTGAGTTCGAAGCTGGTATCTCAAAGGACGGCCAGACCCGTGAACACGCCCTTCTGGCGTTCACCCTCGGTGTGCGTCAGCTCATCGTTGCTGTTAACAAGATGGACACTACCAAGTGGAGCGAGGACCGCTTCAACGAAATCATCAAGGAAACTTCCACCTTCATTAAGAAGGTCGGTTACAACCCCAAGGCTGTTGCCTTCGTCCCAATCTCTGGCTGGCACGGTGACAACATGTTGGAGGAGTCCCCCAACATGCCCTGGTATAAGGGCTGGACCAAGGAGACCAAGGGTGGTGTAGTGAAGGGCAAGACTCTCCTTGATGCCATTGACGCCATCGAGCCCCCAGTTCGT----------------------------------- Hydnomerulius_pinastri_GU187708 -----------------------------------------------TACTGGTGAGTTCGAGGCCGGTATCTCCAAGGACGGTCAGACCCGTGAGCACGCCCTCCTGGCGTTCACCCTCGGTGTGCGTCAGCTCATCGTTGCTGTTAACAAGATGGACACCACCAAGTGGAGCGAGGACCGCTTCAACGAAATTATCAAGGAAACCTCCACCTTCATTAAGAAGGTCGGTTACAACCCCAAGGCTGTTGCCTTCGTTCCCATCTCTGGCTGGCACGGTGACAACATGTTGGAGGAGTCCCCCAACATGCCCTGGTACAAAGGCTGGACCAAGGAGAACAAGGGTGGTGTCGTTAAGGGCAAAACCCTCCTCGACGCCATCGACGCCATCGAGCCCCCCGTCCGT----------------------------------- Hygrophoropsis_aurantiaca_AY883427 ACTGGTACTTCTCAGGCTGATTGCGCTATCCTCATCATTGCCGGTGGTACTGGTGAGTTCGAGGCCGGTATCTCCAAGGACGGTCAAACTCGTGAGCACGCCCTATTGGCGTTCACTCTCGGTGTCCGACAACTCATCGTTGCCGTCAACAAGATGGACACCACCAAGTGGAGCGAGGACCGTTTCAACGAAATTATTAAGGAAACCTCTACCTTCATTAAGAAGGTCGGCTACAACCCCAAGGCTGTTGCCTTCGTCCCCATCTCTGGCTGGCACGGTGACAACATGTTGGAGGAGTCCCCCAACATGCCATGGTACAAAGGTTGGAGCAGGGAGACCAAGGCTGGTGTAGTCAAGGGCAAGACCCTTCTCGATGCCATTGATGCTATCGAGCCCCCGGTCCGTCCTTCCGACAAGCCTCTCCGTCTTCCTCTCCAGGA Leucogyrophana_arizonica_GU187714 -----------------------------------------------TACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGTCAGACCCGTGAGCACGCCCTCCTGGCGTTCACTCTTGGTGTCCGGCAACTCATCGTTGCTGTCAACAAGATGGACACGACCAAGTGGAGCGAGGACCGCTTCAACGAAATTATTAAGGAAACCTCCACCTTCATCAAGAAGGTCGGTTACAACCCTAAGGCTGTTGCTTTCGTCCCCATCTCTGGATGGCATGGTGACAACATGTTGGAGGAGTCTCCCAACATGCCATGGTACAAGGGCTGGACCAAGGAAACTAAGGGTGGTGTCGTGAAGGGCAAGACTCTCTTGGATGCTATTGATGCCATTGAGCCTCCTGTGCGT----------------------------------- Leucogyrophana_lichenicola_GU187715 -----------------------------------------------TACTGGTGAGTTCGAGGCTGGTATCTCCAAGGACGGCCAGACCCGTGAACACGCCCTCTTGGCGTTCACTCTCGGCGTACGGCAACTCATCGTCGCTGTCAACAAGATGGACACCACCAAGTGGAGCGAGGACCGGTTCAACGAAATCATCAAGGAAACCTCTACCTTCATCAAGAAGGTCGGCTACAACCCGAAGGCAGTCGCCTTCGTTCCCATCTCTGGCTGGCACGGTGACAACATGTTGGAGGAGTCTGTCAATATGCCATGGTTCAAAGGTTGGACCAAGGAGACCAAGGGTGGTGTTGTCAAGGGCAAGACCCTCCTCGACGCCATTGATGCCATCGAACCCCCCGTCCGA----------------------------------- Leucogyrophana_olivascens_GU187717 -----------------------------------------------TACTGGTGAGTTCGAGGCCGGTATCTCCAAGGACGGCCAGACCCGTGAGCACGCCCTCCTGGCGTTCACTCTCGGTGTGCGGCAGCTCATTGTCGCTGTCAACAAGATGGACACCACCAAGTGGAGCGAGGACCGTTTCAATGAAATCGTTAAGGAAACCTCCACCTTCATCAAGAAGGTCGGCTACAACCCTAAGGCTGTCGCCTTCGTTCCCATCTCTGGCTGGCATGGTGACAACATGTTGGAGGAGTCCCCCAACATGCCCTGGTACAAGGGCTGGTCGAAGGAGACCAAAGGTGGTGTCGCTAAGGGCAAGACCCTCCTCGATGCCATCGACGCCATCGAGCCCCCAGTCCGT----------------------------------- Leucogyrophana_romellii_GU187720 -----------------------------------------------TACTGGTGAATTCGAGGCTGGTATCTCAAAGGACGGTCAGACCCGTGAGCACGCCCTCTTGGCGTTCACTCTCGGCGTGCGGCAACTCATCGTGGCCGTCAACAAGATGGACACCACCAAGTGGAGTGAGGACCGGTTCAACGAAATCATCAAGGAAACGTCTACCTTCATCAAGAAGGTCGGTTACAACCCCAAGGCCGTCGCCTTCGTTCCTATCTCTGGCTGGCACGGTGACAACATGTTGGAGGAGTCTGTCAACATGCCATGGTTCAAGGGCTGGACCAAGGAGACCAAGGGTGGTGTTATTAAGGGCAAGACCCTCCTCGATGCCATCGACGCCATCGAACCTCCCGTCCGA----------------------------------- Phlebopus_portentosus_GU187735 ACCGGTACCTCCCAGGCTGACTGTGCTATTCTTATCATTGCTGGTGGTACTGGTGAATTCGAAGCCGGTATCTCTAAGGATGGTCAGACCCGTGAGCACGCCCTCTTGGCGTTCACTCTCGGTGTGCGTCAGCTTATCGTCGCTGTCAACAAGATGGACACCACCAAGTGGAGTGAGGACCGTTTCAACGAAATTGTCAAGGAAACTTCCACCTTCATCAAGAAGGTTGGCTACAACCCCAAGGCTGTCGCCTTCGTCCCGATCTCTGGCTGGCACGGTGACAACATGTTGGAGGAGTCCGCCAACATGCCATGGTACAAGGGCTGGACTAAGGAGACCAAGGGTGGTGTCGTCAAGGGCAAGACGCTTCTTGACGCCATTGACGCCATTGAGCCCCCTGTTCGTCCCTCCGACAAGCCCCTCCGACTTCCCCTTCAGGA Porphyrellus_porphyrosporus_GU187734 -----------------------------------------------TACTGGTGAGTTCGAGGCTGGTATCTCCAAGGACGGTCAGACCCGTGAACACGCTCTTCTGGCGTTCACCCTCGGTGTGCGTCAGCTCATTGTCGCTGTCAACAAAATGGACACAACCAAGTGGAGCGAGGACCGCTTTAACGAAATTGTCAAGGAAACGTCAACCTTCATTAAGAAGGTCGGCTACAACCCCAAGGCCGTTGCTTTCGTGCCTATCTCTGGCTGGCATGGTGACAACATGCTGGAGGAATCCCCCAACATGCCCTGGTACAAGGGTTGGACTAGGGAGGTCAAGAGTGGTGTCGTCAAGGGAAAGACCCTCCTCGATGCCATTGATGCCATCGAGCCTCCCGCTCGT----------------------------------- Pseudomerulius_aureus_GU187731 -----------------------------------------------TACTGGTGAATTCGAAGCTGGTATCTCCAAGGATGGCCAGACTCGTGAGCACGCCCTCCTGGCGTTCACTCTCGGTGTGCGGCAACTCATTGTCGCTATCAACAAGATGGACACCACCAAGTGGAGCGAAGACCGATTCAACGAAATTGTCAAGGAGACATCCACCTTCATCAAGAAGGTCGGCTACAACCCCAAAGCCGTTGCTTTCGTCCCCATCTCTGGCTGGCACGGTGACAACATGTTGGAGGAATCTCCCAACATGCCTTGGTACAAGGGCTGGTCTAGGGAGGCCAAGGCTGGTGTTTTGAAGGGCAAGACCCTTCTCGAYGCCATCGATGCCATCGAGCCCCCTGTTCGT----------------------------------- Pseudomerulius_curtisi_GU187725 -----------------------------------------------CACTGGTGAATTCGAGGCTGGTATTTCCAAGGATGGCCAGACTCGTGAGCACGCCCTCTTGGCGTTCACTCTCGGTGTCCGCCAACTCATTGTTGCCATCAACAAGATGGATACCACCAAGTGGAGTGAGGACCGATTCAATGAAATCGTCAAGGAAACATCCACCTTCATCAAGAAGGTTGGCTACAACCCCAAGAACGTTGCTTTCGTTCCTATCTCCGGCTGGCACGGYGACAACATGTTGGAGGAGTCCCCCAACATGCCATGGTACAAGGGCTGGACTAAGGAGGTCAAGGCTGGTGTCGTCAAGGGCAAGACCCTYCTGGATGCCATCGATGCCATTGAGCCCCCCGTTCGT----------------------------------- Rhizopogon_nigrescens_GU187744 -----------------------------------------------TACTGGTGAGTTCGAAGCTGGTATCTCCAAGGACGGTCAGACCCGTGAGCACGCCCTCTTGGCGTTCACYCTTGGTGTCCGTCAGCTCATCGTTGCCGTCAACAAGATGGACACCACTAAGTGGAGCGAGGACCGTTTCAACGAAATTATTAAGGAAACCTCCACCTTCATTAAGAAGGTCGGCTACAACCCCAAGTCCGTTGCATTCGTCCCCATCTCTGGCTGGCACGGTGACAACATGTTGGAGGAGTCCCCCAACATGCCATGGTACAAGGGCTGGACCAAGGAGACCAAGGGTGGTGTTGTCAAGGGCAAGACCCTCCTCGATGCCATCGATGCCATCGAGCCCCCAGTTCGT----------------------------------- Rhopalogaster_transversarium_DQ219225 ACTGGTACCTCCCAGGCTGACTGTGCCATCCTCATCATTGCCGGTGGTACTGGTGAGTTCGAGGCTGGTATTTCTAAGGACGGTCAGACCCGTGAGCACGCCCTTTTGGCGTTCACCCTCGGTGTCCGTCAGCTCATCGTTGCCGTCAACAAGATGGACACGACTAAGTGGAGCGAGGACCGTTTCAACGAAATCATCAAGGAGACATCCACTTTCATCAAGAAAGTCGGCTACAACCCCAAGGCCGTTGCATTTGTCCCCATTTCTGGCTGGCACGGTGACAACATGTTGGAGGAGTCCCCCAACATGCCATGGTACAAGGGCTGGACGAAAGAGACCAAGGGCGGTGTTGTTAAGGGCAAGACCCTCCTCGATGCTATTGATGCCATCGAACCCCCTGTCCGTCCTTCTGACAAGCCCCTTCGTCTTCCCCTCCAGGA Serpula_lacrymans_GU196521 -----------------------------------------------TACTGGTGAATTTGAAGCTGGAATCTCGAAGGATGGGCAGACTCGTGAACACGCCCTTTTGGCGTTTACCTTGGGTGTTAGGCAACTCATTGTTGCTGTCAATAAAATGGATACTACGAA-TGGAGCGAGGATCGTTTCAATGAAATTATCAAGGAAACCTCTACTTTTATCAAGAAAGTTGGTTACAACCCGAAAGCTGTCGCCTTTGTCCCCATATCTGGGTGGCATGGTGACAACATGTTGGAAGAGTCTCCCAATATGCCGTGGTACAAAGGTTGGACCAAGGAGACTAAGG-CGGCGTTGTGAAAGGCAAAACTCTTTTGGATGCTATTGACGCC-TTGAGCCACCCGTCCGT----------------------------------- Suillus_bresadolae_GU187746 ACGGGTACTTCCCAGGCTGACTGCGCTGTCCTCATCATTGCCGGTGGTACTGGTGAATTCGAGGCTGGTATCTCCAAGGACGGTCAGACCCGTGAGCACGCCCTCTTGGCGTTCACCCTCGGTGTCCGTCAGCTCATCGTTGCTGTCAACAAGATGGACACGACCAAGTGGAGCGAGGACCGTTTCAACGAAATTATCAAGGAAACTTCCACTTTCATCAAGAAGGTCGGCTACAACCCCAAGGCCGTTGCATTCGTCCCCATCTCTGGCTGGCACGGTGACAACATGTTGGAGGAGTCCCCCAACATGCCATGGTACAAGGGCTGGACCAAGGAGACCAAGGGTGGTGTTGTTAAGGGCAAGACCCTCCTCGATGCCATCGATGCTATTGAACCTCCTGTTCGTCCTTCCGACAAGCCCCTCCGTCTTCCCCTTCAGGA Suillus_pictus_AY883429 ACTGGTACCTCCCAGGCTGACTGCGCTATCCTCATCATTGCTGGTGGTACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCACGCCCTCTTGGCGTTCACCCTCGGTGTCCGTCAGCTCATCGTTGCCGTCAACAAGATGGACACGACTAAGTGGAGCGAAGACCGTTTCAACGAAATTATCAAGGAAACCTCCACCTTCATCAAGAAAGTTGGCTACAACCCCAAGGCTGTTGCATTCGTTCCCATCTCTGGCTGGCACGGTGACAACATGTTGGAGGAGTCCCCCAACATGCCATGGTACAAAGGCTGGACCAAGGAAACCAAGGGCGGTGTTGTTAAGGGCAAGACCCTCCTCGATGCCATCGATGCCATCGAACCTCCTCTCCGTCCTTCTGACAAGCCTCTCCGTCTTCCCCTCCAGGA Strobilomyces_sp_KF112257 ACGGGAACCTCTCAGGCTGACTGTGCCATCCTCATTATCGCCGGCGGTACCGGTGAGTTCGAGGCTGGTATCTCGAAGGACGGTCAGACTCGCGAACACGCCCTGTTGGCTTTCACCCTTGGTGTACGTCAGTTGATTGTCGCCGTTAACAAGATGGACACGACGAAGTGGAGCGAGGACCGCTTCAACGAAATCGTCAAGGAAACCTCGACCTTCATTAAGAAAGTTGGCTACAACCCCAAAGCCGTCGCTTTCGTCCCGATTTCGGGCTGGCATGGTGACAATATGCTGGAGGAATCTGCCAACATGCCCTGGTACAAGGGCTGGACTAAGGAAGTCAAGAGTGGTGCAGTCAAGGGCAAGACCCTCCTAGACGCTATTGATGCAATTGAGCCTCCCGTCCGTCCCTCCGACAAACCTCTTCGCCTTCCTCTCCAGGA Tapinella_atrotomentosa_GU187757 -----------------------------------------------TACCGGTGAATTCGAAGCTGGTATTTCTAAGGATGGTCAGACTCGTGAGCACGCCCTCTTGGCGTTCACTCTAGGTGTGCGGCAACTCATCGTCGCCATCAACAAGATGGACACCACCAAATGGAGTGAGGACCGTTTCAATGAAATCGTTAAGGAAACTTCTACTTTCATCAAGAAGGTCGGTTACAACCCCAAGGCTGTTGCTTTCGTTCCTATTTCTGGTTGGCACGGTGACAACATGTTGGAGGACTCACCTAACATGACATGGTACAAGGGTTGGACTAAGGAAACCAAGGCTGGTGTTGTGAAGGGCAAGACTCTGCTTGAAGCTATCGACGCCATTGAGCCCCCTGTTCGT----------------------------------- Strobilomyces_sp_KF112258 ACCGGTACCTCCCAGGCTGACTGTGCCATCCTCATTATCGCCGGTGGTACCGGTGAGTTTGAGGCTGGTATCTCGAAGGACGGTCAGACTCGTGAACACGCACTGTTGGCTTTCACGCTTGGTGTACGTCAGTTGATTGTCGCCGTTAACAAGATGGACACAACCAAGTGGAGCGAGGACCGCTTCAACGAAATCGTCAAGGAAACCTCAACTTTCATTAAGAAGGTTGGCTACAACCCAAAAGCTGTCGCCTTCGTGCCGATCTCCGGCTGGCATGGGGACAACATGCTGGAGGAATCTCCCAACATGCCCTGGTACAAGGGCTGGACCAAGGAAGTCAAGGGTGGTGCCGTCAAGGGCAAGACCCTTCTCGATGCCATTGATGCCATCGAGCCTCCCGTCCGTCCCTCCGACAAACCTCTTCGTCTTCCTCTCCAGGA ; END; BEGIN TREES; Title Sedecula_TEF1a_tree; LINK Taxa = Taxa; TRANSLATE 1 Athelia_epiphylla_GU187676, 2 Austroboletus_subvirens_JN378458, 3 Austroboletus_eburneus_JX889708, 4 Boletellus_projectellus_AY879116, 5 Boletus_shichianus_DQ408145, 6 Buchwaldoboletus_lignicola_JQ327040, 7 Boletinellus_merulioides_DQ056287, 8 Boletus_edulis_GU187682, 9 Bondarcevomyces_taxi_GU187683, 10 Calostoma_cinnabarinum_AY879117, 11 Chalciporus_piperatus_GU187690, 12 Coniophora_puteana_GU187687, 13 Coniophora_prasinoides_GU187691, 14 Coniophora_arida_GU187684, 15 Coniophora_arida_GU187685, 16 'Coniophora puteana XM_007764593', 17 Coniophora_puteana_GU187693, 18 Coniophora_puteana_AM293170, 19 Coniophora_olivacea_GU187689, 20 Coniophora_olivacea_AM747623, 21 Coniophora_olivacea_AM747607, 22 Coniophora_olivacea_AM747615, 23 Coniophora_prasinoides_GU18769, 24 Coniophora_cerebella_GU187692, 25 Coniophora_marmorata_GU187688, 26 Sedecula_pulvinata_KP033141, 27 Gomphidius_roseus_GU187702, 28 Gyrodontium_sacchari_GU187703, 29 Gyrodon_lividus_GU187701, 30 Hydnomerulius_pinastri_GU187708, 31 Hygrophoropsis_aurantiaca_AY883427, 32 Leucogyrophana_arizonica_GU187714, 33 Leucogyrophana_lichenicola_GU187715, 34 Leucogyrophana_olivascens_GU187717, 35 Leucogyrophana_romellii_GU187720, 36 Phlebopus_portentosus_GU187735, 37 Porphyrellus_porphyrosporus_GU187734, 38 Pseudomerulius_aureus_GU187731, 39 Pseudomerulius_curtisi_GU187725, 40 Rhizopogon_nigrescens_GU187744, 41 Rhopalogaster_transversarium_DQ219225, 42 Serpula_lacrymans_GU196521, 43 Suillus_bresadolae_GU187746, 44 Suillus_pictus_AY883429, 45 Strobilomyces_sp_KF112257, 46 Tapinella_atrotomentosa_GU187757, 47 Strobilomyces_sp_KF112258; TREE best = (((33:0.02993181,35:0.03560024):0.02700215,(((36:0.04371797,(9:0.12468371,(46:0.09358957,(39:0.06211863,38:0.04738698):0.0167642):0.02135854):0.00757087):0.02112135,(28:0.12814516,34:0.04618236):0.0148149):0.00515547,(((7:0.05093553,31:0.04600898):0.01305954,(10:0.13679211,(((44:0.02690959,41:0.03698933):0.01038631,((27:0.10012794,43:1.0E-8):0.02207096,((((29:0.04652468,30:0.03095087):0.01139684,((((37:0.0394847,(45:0.06167171,47:0.02332426):0.08278874):0.0227481,(5:0.05516015,4:0.01463967):0.04027335):0.00459048,(2:0.04376063,3:0.02685111):0.02271091):0.00281506,8:0.06986384):0.02025317):0.01533868,6:0.04076627):0.0063976,((32:9.865E-5,42:0.25085715):0.06293366,11:0.03389284):1.0E-8):0.02008429):0.00690943):0.00895247,40:0.02149254):1.0E-8):0.00389172):0.00862561,((25:0.07411171,((18:0.01934472,(12:0.01935144,((16:1.0E-8,24:1.0E-8):0.00261415,17:1.0E-8):0.01450016):0.01126708):0.03728351,(((21:0.03533006,(22:0.00555068,20:0.01612978):0.00129297):0.00455375,(19:0.00223793,(13:1.0E-8,23:1.0E-8):0.0016563):0.01050045):0.01268808,26:0.09161607):0.00436564):1.0E-8):0.01080717,(14:0.00571912,15:0.00901636):0.05983521):0.03291638):0.0075762):0.01217513):0.029023405,1:0.029023405[%selected = on ]); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 440; END; begin mrbayes; set autoclose = no nowarn = yes; charset codonPos1 = 1 -439 \ 3; charset codonPos2 = 2 -440 \ 3; charset codonPos3 = 3 -438 \ 3; partition currentPartition = 3 : codonPos1 , codonPos2 , codonPos3; set partition = currentPartition; lset applyto = ( 1 , 2 , 3 ); lset nst = 6 rates = invgamma; unlink statefreq = ( all ) revmat = ( all ) shape = ( all ) pinvar = ( all ); prset applyto = ( all ) ratepr = variable; mcmcp ngen = 10000000 relburnin = yes burninfrac = 0.25 printfreq = 1000 samplefreq = 1000 nchains = 4 savebrlens = yes; mcmc; sumt; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 440; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 440; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 5158724081309345677; tell It; setDefaultOrder 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 20 25 17 15 16 18 23 24 19 21 22 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46; attachments ; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 57819110173287140; checksumv 0 2 1351671879 null; endTell; getWindow; tell It; suppress; setResourcesState false false 244; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1577 964; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #5158724081309345677 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #5158724081309345677; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1333 897; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #5158724081309345677 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 981.1421356079852.8793257515189061934; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1333 897; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.arrow; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(((33:0.02993181,35:0.03560024):0.02700215,(((36:0.04371797,(9:0.12468371,(46:0.09358957,(39:0.06211863,38:0.04738698):0.0167642):0.02135854):0.00757087):0.02112135,(28:0.12814516,34:0.04618236):0.0148149):0.00515547,(((7:0.05093553,31:0.04600898):0.01305954,(10:0.13679211,(((44:0.02690959,41:0.03698933):0.01038631,((27:0.10012794,43:1.0E-8):0.02207096,((((29:0.04652468,30:0.03095087):0.01139684,((((37:0.0394847,(45:0.06167171,47:0.02332426):0.08278874):0.0227481,(5:0.05516015,4:0.01463967):0.04027335):0.00459048,(2:0.04376063,3:0.02685111):0.02271091):0.00281506,8:0.06986384):0.02025317):0.01533868,6:0.04076627):0.0063976,((32:9.865E-5,42:0.25085715):0.06293366,11:0.03389284):1.0E-8):0.02008429):0.00690943):0.00895247,40:0.02149254):1.0E-8):0.00389172):0.00862561,((25:0.07411171,((18:0.01934472,(12:0.01935144,((16:1.0E-8,24:1.0E-8):0.00261415,17:1.0E-8):0.01450016):0.01126708):0.03728351,(((21:0.03533006,(22:0.00555068,20:0.01612978):0.00129297):0.00455375,(19:0.00223793,(13:1.0E-8,23:1.0E-8):0.0016563):0.01050045):0.01268808,26:0.09161607):0.00436564):1.0E-8):0.01080717,(14:0.00571912,15:0.00901636):0.05983521):0.03291638):0.0075762):0.01217513):0.029023405,1:0.029023405);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;