NEXUS
[File created by TreeBASE:  1/16/09  15:35:04]
[Matrix accession#: M3847]

BEGIN TAXA;
	TITLE M3847;
	DIMENSIONS  NTAX=23;
	TAXLABELS
		Aristolochia_saccata_Asa_homo	Aristolochia_westlandii_SETS36_allele1	Aristolochia_westlandii_SETS36_allele2	Aristolochia_moupinensis_Mou2_allele2	Aristolochia_moupinensis_Mou2_allele1	Aristolochia_manshuriensis_SEST21_allele2	Aristolochia_manshuriensis_SEST21_allele1	Aristolochia_kaempferi_K642homo_K160homo	Aristolochia_tanzawana_K95homo_K555homo_K653homo	Aristolochia_K580homo_K325homo_K61_1_Setu2_2_AM2_1	Aristolochia_kaempferi_K61allele2_K437allele2	Aristolochia_shimadai_K437_allele1	Aristolochia_kaempferi_K158_allele2	Aristolochia_kaempferi_K158_allele1	Aristolochia_shimadai_Setu2allele1_AC2allele1	Aristolochia_shimadai_K282_allele2	Aristolochia_shimadai_K282_allele1	Aristolochia_shimadai_AS2_allele1	Aristolochia_shimadai_AS2_allele2	Aristolochia_liukiuensis_K32_allele1	Aristolochia_liukiuensis_K32_allele2	Aristolochia_cucurbitifolia_AC2_allele2	Aristolochia_mollissima_AM2_allele2
	;
END;

BEGIN CHARACTERS;
	TITLE M3847;
	DIMENSIONS NCHAR=261;
	FORMAT DATATYPE = DNA MISSING = ? GAP = -  ;
	MATRIX
		Aristolochia_saccata_Asa_homo                            GTATGCCCTTTCTTTTTCATAATAAACTGATTAAACTCTCTTTATCTCTTGAACTGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTGTTCAC--CTGTGGTCACTGATAGTGGGATATGGTCGTCACAATGCTTCTGAGCTTGGGCATTTTCCATATTCAGTT----C-----CCCAAAGAAATGAACCAGGAATATTAACAAGGTTTCTACTTGTGATTTGTATATTAAACTACACAAGTTTTCCATTTTGACAG
		Aristolochia_westlandii_SETS36_allele1                   GTATGCCCTTTCTTTTTCATAATAAACTGATTGAACTCCCTTTATCTCTTGAACTGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTGTTCAATTCTGTGGTCACTGATAGTGGGATATGGTCTTCAAAATGCTTCTGAGCTTGGGCATTTTCCATATTCAGTTT---C-----CCCAAAGAAATGAACCAGTAATATTAACAAGGTTTCTACTTGTGATTCGTATATTAAACCACACAAGTTTTCCATTTTGACAG
		Aristolochia_westlandii_SETS36_allele2                   GTATGCCCTTTCTTTTTCATAATAAACTGATTGAACTCTCTTTATCTCTTGAACTGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTGTTCAATTCTGTGGTCACTGATAGTGGGATATGGTCTTCAAAATACTTCTGAGCTTGGGCATTTTCCATATTCAGTTTTT-AAAGTTCCCAAACAAATGAACCAGTAATATTAACAAGGTTTCTACTTGTGATTCGTATATTAAACCACACAAGTTTTCCATTTTGACAG
		Aristolochia_moupinensis_Mou2_allele2                    GTATGCCCTTTCTTTTTCATAATAAACTGATTAAACTCTCTTTATCTCTTGAACTGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTGTTCAATTCTGTGGTCACTGATAGTGGGATATGGTCTTCACAATGCTTCTGAGCTTGGGCATTTTCCATATTCAGTT----C-----CCCAAAGAAATGAACCAGTAATATTAACAAGGTTTCTACTTGTGATTTGTATATTAAACTACACAAGTTTTCCATTTTGACAG
		Aristolochia_moupinensis_Mou2_allele1                    GTATGCCCTTTCTTTTTCATAATAAACTGATTAAACTCTCTTTATCTCTTGAACTGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTGTTCAATTCTGTGGTCACTGATAGTGGGATATGGTCTTCACAATGCTTCTGAGCTTGGGCATTTTCCATATTCAGTT----C-----CCCAAAGAAATGAACTAGTAATATTAACAAGGTTTCTACTTGTGATTTGTATATTAAACTACACAAGTTTTCCATTTTGACAG
		Aristolochia_manshuriensis_SEST21_allele2                GTATGCTCTTTCTTTTTCATAATAAACTGATTAAACTTTCCTTATCTCTTAAACTGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTCTCCAATTCTGTGGTCACTGATAGTGGGATATGGTCTTCAAAATGCTTCTGAGCTTGGGCCTGTTCCACATTCAGTTTTTTAAAGTTCCCAAAGAAATGAACCAGTGATATTAACAAGGTTTCTACTTGTGATTTGTATATTAAACTACACAAGTTTTCCATTTTGACAG
		Aristolochia_manshuriensis_SEST21_allele1                GTATGCTCTTTCTTTTTCATAATAAACTGATTAAACTTTCCTTATCTCTTAAACTGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTGTCCAATTCTGTGGTCACTGATAGTGGGATATGGTCTTCAAAATGCTTCTGAGCTTGGGCCTGTTCCACATTCAGTTTTTTAAAGTTCCCAAAGAAATGAACCAGTGATATTAACAAGGTTTCTACTTGTGATTTGTATATTAAACTACACAAGTTTTCCATTTTGACAG
		Aristolochia_kaempferi_K642homo_K160homo                 GTATGCCATTTCTTTTTCATAATAAACTGATTAAACTCTCTTTATCTCTTGAACAGATGATGGTTTCACTGCTGTTATGGTGATCCAAACTGTTCAATTCTGTGGTCACTGATAGTGGGATATGGTCTTTACAATGCCTCTGAGCTTGGGCATTTTCCATATTCAGTTTTT-AAAGTTCCCAAAGAAATGAACCAGTAATATTAACAAGGTTTATACTTGTGATTTGTATATTAAACTACACAAGTTTTCTATTTTGACAG
		Aristolochia_tanzawana_K95homo_K555homo_K653homo         GTATGCCCTTTCTTTTTCATAATAAACTGATTAAACTCTTTTTATCTCTTGAACTGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTGTTCAATTCTGTGGTCACTGATAGTGGGATATGGTCTTTACAATGCCTCTGAGCTTGGGCATTTTCCATATTCAGTTTT--AAAGTTCCCACAGAAATGAACCAGTAATATTAACAAGGTTTATACTTGTGATTTGTATATTAAACTACACAAGTTTTCTATTTTGACAG
		Aristolochia_K580homo_K325homo_K61_1_Setu2_2_AM2_1       GTATGCCCTTTCTTTTTCATAATAAACTGATTAAACTCTTTTTATCTCTTGAACTGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTGTTCAATTCTGTGGTCACTGATAGTGGGATATGGTCTTTACAATGCCTCTGAGCTTGGGCATTTTCCATATTCAGTTTTT-AAAGTTCCCAAAGAAATGAACCAGTAATATTAACAAGGTTTATACTTGTGATTTGTATATTAAACTACACAAGTTTTCTATTTTGACAG
		Aristolochia_kaempferi_K61allele2_K437allele2            GTATGCCCTTTCTTTTTCATAATAAACTGATTAAACTCTTTTTATCTCTTGAACTGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTGTTCAATTCTGTGGTCACTGATAGTGGGATATGGTCTTTACATTGCCTCTGAGCTTGGGCATTTTCCATATTCAGTTTTT-AAAGTTCCCAAAGAAATGAACCAGTAATATTAACAAGGTTTATACTTGTGATTTGTATATTAAACTACACAAGTTTTCTATTTTGACAG
		Aristolochia_shimadai_K437_allele1                       GTATGCCCTTTCTTTTTCATAATAAACTGATTAAACTCTTTTTATCTCTTGAACTGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTGTTCAATTCTGTGGTCACTGATAGTGGGATATGGTTTTTACAATGCCTCTGAGCTTGGGCATTTTCCATATTCAGTTTT--AAAGTTCCCACAGAAATGAACCAGTAATATTAACAAGGTTTATACTTGTGATTTGTATATTAAACTACACAAGTTTTCTATTTTGACAG
		Aristolochia_kaempferi_K158_allele2                      GTATGCCCTTTCTTTTTCATAATAAACTGATTAAACTCTTTTTATCTCTTGAACTGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTGTTCAATTCTGTGGTCACTGATAGTGGGATATGGTCTTTACAATGCTTCTGAGCTTGGGCATTTTCCATATTCAGTTTTT-AAAGTTTCCAAAGAAATGAACCAGTAATATTAACAAGGTTTCTACATGTGATTTGTATATTAAACTACATAAGTTTTCCATTTTGACAG
		Aristolochia_kaempferi_K158_allele1                      GTATGCCCTTTCTTTTTCATAATAAACTGATTAAACTCTTTTTATCTCTTGAACTGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTGTTCAATTCTGTGATCACTGATAGTGGGGCATGGTCTTTACAATGCCTCTGAGCTTGGGCATTTTCCATATTCAGTTTTT-AAAGTTCCCAAAGAAATGAACCAGTAATATTAACAAGGTTTCTACTTGTGATTTGTATATTAAACTACACAAGTTTTCTATTTTGACAG
		Aristolochia_shimadai_Setu2allele1_AC2allele1            GTATGCCCTTTCTTTTTCATAATAAACTGATTAAACTCTTTTTATCTCTTGAACTGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTGTTCAATTCTGTGGTCACTGATAGTGGGATATGGTTTTTACAATGCCTCTGAGCTTGGGCATTTTCCATATTCAGTTTTT-AAAGTTCCCAAAGAAATGAACCAGTAATATTAACAAGGTTTATACTTGTGATTTGTATATTAAACTACACAAGTTTTCTATTTTGACAG
		Aristolochia_shimadai_K282_allele2                       GTATGCCCTTTCTTTTTCATAATAAACTGATTAAACTCTCTTCATCTCTTGAACTGATAATGGTTTCACTGCTGTTATGGTGATCTAAACTGTTCAATTCTGTGGTCACTGATAGTGGGATATGGTCTTTACAATGCTTCTGAGCTTGGGCATTTTCCATATTCAGTTTTT-AAAGTTCCCAAAGAAATGAACCAGTAATATTAACAAGGTTTATACTTGTGATTTGTATATTAAACTACACAAGTTTTCTATTTTGACAG
		Aristolochia_shimadai_K282_allele1                       GTATGCCCTTTCTTTTTCATAATAAACTGATTAAACTCTCTTCATCTCTTGAACTGATAATGGTTTCACTGCTGTTATGGTGATCTAAATTGTTCAATTCTGTGGTCACTGATAGTGGGATATGGTCTTTACAATGCTTCTGAGCTTGGGCATTTTCCATATTCAGTTTTT-AAAGTTCCCAAAGAAATGAACCAGTAATATTAACAAGGTTTATACTTGTGATTTGTATATAAAACTACACAAGTTTTCTATTTTGACAG
		Aristolochia_shimadai_AS2_allele1                        GTATGCCCTTTCTTTTTCATAATAAACTGATTAAACTCTTTTTATCTCTTGAACTGATGATGGTTTCACTGCTGTTATTGTGATCTAAACTGTTCAATTCTGTGGTCACTGATAGTGGGATATGGTCTTTACAATGCCTCTGAGCTTGGGCATTTTCCATATTCAGTTTTT-AAAGTTCCCAAAGAAATGAACCAGTAATATTAACAAGGTTTATACTTGTGATTTGTATATTAAACTACACAAGTTTTCTATTTTGACAG
		Aristolochia_shimadai_AS2_allele2                        GTATGCCCTTTCTTTTTCATAATAAACTGATTAAACTCTTTTTATTACTTGAACTGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTGTTCAATTCTGTGGTCACTGATAGTGGGATATGGTTTTTACAATGCCTCTGAGCTTGGGCATTTTCCATATTCAGTTTTT-AAAATTCCCAAAGAAATGAACCAGTAATATTAACAAGGTTTATACTTGTGATTTGTATATTAAACTACACAAGTTTTCTATTTTGACAG
		Aristolochia_liukiuensis_K32_allele1                     GTATGCCCTTTCTTTTTCATAATAAACTGATTAAACTCTCTTTATCTCTTGAACAGATGATGGTTTCACTGCTGTTATGGTGATCCAAACTGTTCAATTCTGTGGTCACTGATAGTGGGATATGGTTTTTACAATGCCTCTGAGCTTGGGCATTTTCCATATTCAGTTTTT-AAAGTTCCCAAAGAAATGAACCAGTTATATTAACAAGGTTTCTACTTGTGATTTGTATATTAAACCACACAAGTTTTCTATTTTGACAG
		Aristolochia_liukiuensis_K32_allele2                     GTATGCCCTTACTTTTTCATAATAAACTGATTAAACTCTCTTTATCTCTTGAACAGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTGTTCAATTCTGTGGTCACTGATAGTGGGATATGGTTTTTACAATGCCTCTGAGCTTGGGCATTTTCCATATTCAGTTTTT-AAAATTCCCAAAGAAATGAACCAGTAATATTAACAAGGTTTATACTTGTGATTTGTATATTAAACTACACAAGTTTTCTATTTTGACAG
		Aristolochia_cucurbitifolia_AC2_allele2                  GTATGCCCTTTCTTTTTCATAATAAACTGATTAAACTCTCTTTATCTCTTGAACAGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTGTTCAATTCTGTGGTCACTGATAGTGGGATATGGTTTTTACAATGCCTCTGAGCTTGGGCATTTTCCATATTCAGTTTTT-AAAGTTCCCAAAGAAATGAACCAGTAATATTAACAAGGTTTATACTTGTGATTTGTATATTAAACTACACAAGTTTTCTATTTTGACAG
		Aristolochia_mollissima_AM2_allele2                      GTATGCCCTTTCTTTTTCATAATAAACTGATTAAACTCTTTTTATCTCTTGAACTGATGATGGTTTCACTGCTGTTATGGTGATCTAAACTGTTCAATTCTGTGGTCACTGATAGTGGGATATGGTTTTTACAATGCCTCTGAGCTTGGGCATTTTCCATATTCAGTTTTT-AAAGTTCCCAAAGAAATGAACCAGTTATATTAACAAGGTTTCTACTTGTGACTTGTATATTAAACCACACAAGTTTTCTATTTTGACAG
	;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions = 
 N: 1 - 261 ; 
 CODESET * UNTITLED = Universal: all ; 
 END;

BEGIN ASSUMPTIONS;
OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 END;