#NEXUS [written Tue Aug 12 14:10:50 EDT 2014 by Mesquite version 2.75 (build 566) at Shayla-Salzmans-iMac-2.local/10.0.0.2] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=80; TAXLABELS Costus_afer_M10205 Costus_albiflos_M9968 Costus_allenii_M9563 Costus_amazonicus_M9036 Costus_arabicus_CS98193 Costus_asplundii_R2976 Costus_barbatus_CS01256 Costus_beckii_CS99232 Costus_bracteatus_M9409 Costus_chartaceus_WJK903124 Costus_claviger_M9306 Costus_comosus_var._bakeri_19990126011 Costus_curvibracteatus_M9381 Costus_spicatus_WJK027143 Costus_deistelii_M9298 Costus_dinklagei_TvA3549 Costus_aff._dubius_L920048 Costus_dirzoi_19960228002 Costus_dubius_M10206 Costus_erythrocoryne Costus_erythrophyllus_R2847 Costus_erythrothyrsus_M9317 Costus_gabonensis_M10291 Costus_geothyrsus_BS6782 Costus_glaucus_Delft46325 Costus_guanaiensis_var._guanaiensis_R2666 Costus_guanaiensis_var._macrostrobilus_CS00253 Costus_guanaiensis_var._tarmicus_KMN2811 Costus_laevis_CS01257 Costus_lasius_M9155 Costus_lateriflorus_M10331 Costus_letestui_CS02331 Costus_leucanthus_19961105001 Costus_aff._ligularis_19980923003 Costus_aff._ligularis_20050100003 Costus_aff._ligularis_M10226 Costus_liliaceus_M9995 Costus_lima_R3014 Costus_lima_var._scabremarginatus_BTM750400 Costus_loangensis_M10184 Costus_longibracteolatus_R3003 'Costus lucanusianus (yellow) Breteler5297 ' Costus_lucanusianus_M10000 Costus_maboumiensis_M10227 Costus_aff._afer_WJK943683 Costus_malortieanus_M9791 Costus_montanus_R2972 Costus_nitidus_M9524 Costus_osae_M9501 Costus_phaeotrichus_CS02323 Costus_aff._phyllocephalus_BB870057 Costus_aff._phyllocephalus_M10389 Costus_pictus_WJK943691 Costus_plicatus_WJK945376 Costus_productus_R2693 Costus_pulverulentus_WJK943680 Costus_quasiappendiculatus_CS99233 Costus_ricus_R2970 Costus_scaber_R2253 Costus_spectabilis_WJK976118 Costus_spiralis_M9335 Costus_stenophyllus_L750305 Costus_aff._tappenbeckianus_Tva3675 Costus_aff._tappenbeckianus_20050100001 Costus_aff._tappenbeckianus_20050100002 Costus_aff._tappenbeckianus_WJK943697 Costus_talbotii_20030109009 Costus_varzearum_WJK945379 Costus_villosissimus_KMN632 Costus_vinosus_M9568 Costus_wilsonii_M9507 Costus_woodsonii_CS01264 Costus_zingiberoides_BTM860001 Chamaecostus_cuspidatus_RB584184 Chamaecostus_lanceolatus_pulchriflorus_RB550388 Chamaecostus_subsessilis_RB584183 Monocostus_uniflorus_WJK750065 Dimerocostus_strobilaceus_CS01272 Cheilocostus_globosus_CS02351 Tapeinochilos_queenslandia_Davis_B68168 ; END; BEGIN CHARACTERS; TITLE 'Matrix in file "ML tree of Costus_ETS_131001.nex"'; DIMENSIONS NCHAR=651; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Costus_afer_M10205 ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????AGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACTTTGAG-AGATGGG-GC--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGG-AGAGAGAG---------TATA-GCACCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GTACAGGCAAATTTTGTGGCACCAACAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAATTATTAAACAAC---TTATGTGCC-GACACGGTC-ATTCCAT-GTACATTG-CCTTA-TCGCCCACATGCGTG-C---CCATCAAGAAGATAGT???????????????????????????????????????? Costus_albiflos_M9968 ???????????????????????????????????????????????CCCAA-CGCTACCACCCTAGCTA---GCCAACAATAAAGAAGCCA-TACTAAAGTGCACAC-----GA--TGGGTTGGCAGTCATTCACAGAAGCATGG----AAAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACTTTGAG-AGATGGG-GC--AAAAT-C-CATGCAATCATCCAA--GG-CCATAGGCACCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGG-AGAGAGAG---------TATA-GAACCGAATCATATTTCTCTTTTGA--AATACTA-GTAAATA-GTACAGGCAAATTTTGTGGCACCAACAACAACAA-TGGACCA-TAT-AATGAAGGATTGCACTAATTTCGGTTGGGTGCACAAGGCACAAAGCCCGCCATTATATGCAATTATTAAACAAC---TTATATGCC-GACACGGTC-ATTCCAT-GTACATTA-CCTTA-TCGCCCACATGCGTG-C---ACATCAAGAAGATAG????????????????????????????????????????? Costus_allenii_M9563 ?????????????????????????????????TCGATGATGCCATACCCAA-CGCTTCCACCTTAGCTA---GCCAACAACAAAGAAGCCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCATTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCTCTCAACCAATAA-T-GCAT?CTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TTCTTTGGA-AGATGGA-C?--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGAGAGGGGG?GAGAGAG---------TATA-GCACCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GCACAGGCAAATTTTGTGGCACCAACAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATTAAACAAC---TTATGTGCCAGACACGGTC-ATTCCAT-GTACATTG-CC?TA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_amazonicus_M9036 ???????????????????????????CGTCCTTCGATGATGCCATACCCAA-CGCTTCCACCTTAGCTA---GCCAACAACAAAGAAGCCA-CACTAAAGTGCACAC-----GA--TGGGTTGGCAGTCATTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACTTTGGA-AGATGGG-CG--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAAAC-GG-AGGGAGGGGGAGAGAGAA---------CATA-GCACCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GCACAGGCAAATTTTGTGGCACCAACAGCAACAA-TGGACCA-TATAAATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATTAAACAAC---TTATGTGCCAGACACGGTC-ATTCCAT-GTACATTG-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_arabicus_CS98193 ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GACAGTCATTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGACT---TACTTTGGA-AGATGGG-C---GAAATTC-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAAAC-GG-AGGGAGGGGGAGAGAGAA---------TATA-GCACCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GCACAGGCAAATTTTGTGGCACCAACAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATTAAACAAC---TTATGTGCCAGACACGGTC-ATTCCAT-GTAAATTG-CCTTA-TCGCCCACATGCGTG-C---CCATCAAGAAGATAGTGGCATG-GGGTC-AAATGAGGCGATCAACATTA??????? Costus_asplundii_R2976 ???????????????????????????CGTCCTTCGATGATGCCATACCCAA-CGCTTCCACCTTAGCTA---GCCAACAACAAAGAAGCCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCATTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACTTTGGA-AGATGGG-CG--AAATT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAAAC-GG-AGGGAGGGGGAGAGAGAA---------TATA-GCACCGAGTCATATTTCTCTTCTGA--AAGACAA-GTAGATA-GCACAGGCAAATTTTGTGGCACCAACAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATTAAGCAAC---TTATGTGCCAGACACGGTC-ATTCCAT-GTACATTG-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_barbatus_CS01256 ???????????????????????????CGTCCTTCGATGATGCCATACCCAA-CGCTACCACCTTAGCTA---GCCAACAACAAAGAAGCCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCATTCA-ACAAGCAAATC---ATAGACATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACCCAAGGCACCAATGGTCT---TACTTTGGA-AGATGGG-CG--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGG-AGAGAGAG---------TAGA-GCACCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GCACAGGCAAATTTTGTGGCACCAACAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACGGAGCCCGGAATTATAAGCAACTATTAAACAAC---TTATATGCT-GACACGGTC-ATTCCAT-GTACATTG-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_beckii_CS99232 ??????????????????????????????????????????????????????????CCACCTTAGCTA---GCCAACAACAAAGAAGCCA-TACTAAAGTGCCCAC-----GA--TGGGTTGACAGTCATTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACTTTGGA-AGATGGG-CG--AAAAT-C-CATGCAATCATCCAAAAGG-CCATRGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGGGAGAGAGAG---------TATA-GCACCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GCACAGGCAAATTTTGTGGCACCAACAGCAACAA-TGGACCA-TAY-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATTAAACAAC---TTATGTGCCAGACACGGTC-ATTCCAT-GTACATTG-CCT??????????????????????????????????????????????????????????????????????????????? Costus_bracteatus_M9409 ????????????????????????????????TCCGATGATGCCATACCCAA-CGCTTCCACCTTAGCTA---GCCAACAACAAAGAAGCCA-TACTAAAGTGCACAC-----GG--TGGGTTGACAGTCATTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCGAGGCACCAATGGTCT---TACTTTGGA-AGATGGA-CG--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-?-GG-GGAGAGGGGGAGAGAGAG---------TATA-GCACCGAGTCATATTTCTCCTTTGA--AAGACTA-GTAAATA-GCACAGGCAAATTTTGTGGCACCAACAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATTAAACAAC---TTATGTGCCAGACACGGTC-ATTCCAT-GTACATTG-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_chartaceus_WJK903124 ????????????????????????????????????????????????????????TTCCACCTTAGCTA---GCCAACAACAAAGAAGCCA-TACTAAAGTGCACAC-----GA--AGGGTTGACAGTCATTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACTTTGGA-AGATGGG-CG--AAAAACC-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGGGAGAGAGAG---------TATA-GCACCGAGTCATATTTCCCTTTTGA--AAGACTA-GTAAATA-GCACAGGCAAATTTTGTGGCACCAACAGCAACAA-TGGACCG-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTACATGCAACTATTAAACAAC---TTATGTGCTAGACACGGTC-ATTCCAT-GTACATTG-CCTTA-TCGCCCACATGCGTG-C??????????????????????????????????????????????????????????? Costus_claviger_M9306 ????????????????????????????????TTCGATGATGCCAAACCCAA-CGCTTCCACCTTAGCTA---GCCAACAACAAAGAAGCCA-TACTAAAGCGCACAC-----GA--TGGGTTGACAGTCATTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TAAC-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACTTTGGA-AGATGGG-CG--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAAAC-GG-AGGGAGGGGGAGAGAGAA---------TATA-GCGCCGAGTCATATTTCTCTTTTGA--AAGACTA-GTACATA-GCACAGGCAAATTTTGTGGCACCAACAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTACATGCAACTATTAAACAAC---TTATGTGCCAGACACGGTC-ATTCCAT-GTACATTG-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_comosus_var._bakeri_19990126011 ????????????????????????????????????ATGATGCCATACCCAA-CGCTTCCACCTTAGCTA---GCCAACAACAAAGAAGCCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCATTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACTTTGGA-AGATGGG-CG--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGGGAGAGAGAG---------TATA-GCACCGAGTCACATTTCTCTTTTGA--AAGACTA-GTAAATG-GCACAGGCAAATTTTGTGGCACCAACAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATTAAACAAC---TTACGTGCCAGACACGGTC-ATTCCAT-GTACATTG-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_curvibracteatus_M9381 ???????????????????????????CGTCCTTCAATGATGCCATACCCAA-CGCTTCCACCTTAGCTA---GCCAACAACAAAGAAGTCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCATTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCGCCAATGGTCT---TACTTTGGA-AGATGGG-CG-AAAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGGGAGAGAGAG---------TATA-GCACCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GCACAGGCAAAGTTTGTGGCACCAACAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTACATGCAACTATTAAACAAC---TTAAGTGCCAGACACGGTC-ATTCCAT-GTACATTG-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_spicatus_WJK027143 ?????????????????????????????????????TGATGCCATACCCAA-CGCTTCCACCTTAGCTA---GCCAACAACAAAGAAGTCA-TACTAAAGTGCACAC-----GA--TGGGTTGGCAGTCATTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACTTTGGA-AGATGGG-CG--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGGGAGAAAGAG---------TATA-GCACCGAGTCATATTTCTCTTTTGA--GAGACTA-GTAAATA-GCACAGGCAAAGTTTGTGGCACCGATAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTACATGCAACTATTAAACAAC---TTAAGTGCCAGACACGGTC-ATTCCAT-GTACATTG-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_deistelii_M9298 ?????????????????????????????????????????????????????????????????????????????ACAACAAAGAAGCCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCATTCACACAAGCAAATC---ATAGCCATGAGG-CC---TAAG-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACTTTGGA-AGATGAG-CC--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGG-AGAGAGAG---------TATA-GCACCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GTACAGGCAAATTTTGTGGCACCAACAGCAACAA-TGGACCA-TAT-ATTGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATTAAACAAC---TTATGTGCC-GACACGGTC-ATTCCAT-GTACATTG-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_dinklagei_TvA3549 ???????????????????????????CGTCCTTCGATGATGCCATACCCAA-CGCTACCACCCTAGCTA---GCCAACAATAAAGAAGCCA-TACTAAAGTGCACAC-----GA--TGGGTTGGCAGTCATTCACAGAAGCA--TGG--AAAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACTTTGAG-AGATGGG-GC--AAAAT-C-CATGCAATCATCCGAAAGG-CCATAGGCACCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGG-AGAGAGAG---------TATA-GAACCGAATCATATTTCTCTTTTGA--AATACTA-GTAAATA-GTACAGGCAAATTTTGTGGCACCAACAACAACAA-TGGACCA-TAT-AATGAAGGATTGCACTAATTTCGGTTGGGTGCACAAGGCACAAAGCCCGCCATTATATGCAATTATTAAACAAC---TTATATGCC-GACACGGTC-ATTCCAT-GTACATTA-CCTTA-TCGCCCACATGCGTG-C---ACATC??????????????????????????????????????????????????? Costus_aff._dubius_L920048 ???????????????????????????????????????????????????A-CGCTACCACCTTAGATA---GCCAACAACAAAGAAGCCA-TACTAAACTGCACAC-----GA--TGGGTTG?CAGTCATTCATTCAAGCATGTS---ATAGCCATGAGG-CC---TAAG-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACTTTGGA-AGATGGG-CC--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGG-AGAGAGAG---------TATA-GMACCGAKTCATATTTCTCTTTTGA--AA?ACTA-GTAAATA-GTACAGGCAAATTTTGTGGCACCAACA?CAACAA-TGGACCA-TAT-ATTGAAGRATTGCACTAATTTCGGTTGGGTGCACAAGGCACAAAGCCCGCCATTATATGCAATTATTAAACAAC---TTATGTGCC-GACACGGTC-ATTCCAT-GTACATT?-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_dirzoi_19960228002 ????????????????????????????????TTCGATGATGCCATACCCGA-CGCTACCACCTTAGCTA---GCCAACAACAAAGAAGCCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCATTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACTTTGGA-AGATGGG-CG--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGG-AGAGAGAG---------TGTA-GCACCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GCACAGGCAAATTTTGTGGCACCAACAGCAACAA-TGGACAA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAAAGCCCGCCATTATATGCAACTATTAAACAAC---TTATGTGCC-GACACGGTC-ATTCCAT-GTACATTG-CC???????????????????????????????????????????????????????????????????????????????? Costus_dubius_M10206 ?????????????????????????????????????????????TACCCAA-CGCTACCACCCTAGATA---GCCAACAATAAAGAAGCCA-TACTAAAGTGCACAC-----GA--TGGGTTGGCAGTCATTCACACAAGCATGG----AAAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACTTTGAG-AGATGGG-GC--AAAAT-C-CATGCAATCATCC?AAAGG-CCATAGGCACCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGG-AGAGAGAG---------TATA-GAACCGAATCATATTTCTCTTTTGA--AATACTA-GTAAATA-GTACAGGCAAATTTTGTGG?ACCAACAACAACAA-TGGACCA-TAT-AATGAAGGATTGCACTAATTTCGGTTGGGTGCACAAGGCACAAAGCCCGCCATTATATGCAATTATTAAACAAC---TTATGTGCC-GACACGGTC-ATTCCAT-GTACATTA-CCTTA-TCGCCCACATGCGTG-C---ACATCAAGAAGATAG????????????????????????????????????????? Costus_erythrocoryne ????????????????????????????GTCCTTCGATGATGCCATACCCAA-CGCTTCCACCTTAGCAA---GCCAACAACAAAGAAGCCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCATTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TGAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACTTTGGA-AGATGGGGCG--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAAAC-GG-AGGGAGGGGGAGAGAGAA---------TATA-GCGCCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GCACAGGCAAATTTTGTGGCACCACCAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATTAAACAAC---TTATGTGCCAGACACGGTC-ATTCCCT-GTACATTG-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_erythrophyllus_R2847 ?????????????????????GTAGCACGTCCTTCGATGATGCCATACCCAA-CGCTTCCACCTTAGCTG---GCCAACAACAAAGAAGCCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCATTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCGAGGCACCAATGGTCT---TACTTTGGA-AGATGGG-CG--AAAAT-C-CACGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGAGAGGGGGAGAGAGAG---------TATA-GCACCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GCACAGGCAAATTTTTTGGCACCAACAGCAACAA-TGGACCG-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATTAAACAAC---TTATGTGCCAGACACGGTC-ATTCCAT-GTACATTA-CCTTA-TCGCCCACATGCGTG-C---CCATCAAGAAGATAGTGGCATG-GGGTC-AAATGAGGCGATCAACATTA??????? Costus_erythrothyrsus_M9317 ????????????????????????????GTCCTTCGATGATGCCATACCCAA-CGCTTCCACCTTAGCTA---GCCAACAACAAAGAAGCCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCATTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCTCCAATGGTCT---TACTTTGGA-AGATGGG-CG--AAATT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAGAC-GG-AGGGAGGGGGAGAGAGAG---------TATA-GCACCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GCACAGGCAAATTTTGTGGCACCAACAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATTAAACAAC---TTATGTGCCAGACACGGTC-ATTCCAT-GTACATTG-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_gabonensis_M10291 ??TACTGGCAGGATCAACCAGGTAGCACGTCCTTCGATGATGCCATACCCAA-CGCTACCACCCTAGCTG---GCGAACAACAAAGAAGTCA-TACTAAAGCGCACAC-----GA--TGGGTAGACAGTCATTCGCATAGACAAAAC---ATAGCCATGAGG-CC---TAAA-GGCACTCGACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACTTTGAG-AGATGGGGCA--AAAAC-C-CATGCAATCATCCAAAAGG-CCATAGGTGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGG-AGAGAGAG---------TATA-GCACCGAGTCATATTTCTCTTATGA--AA-ACTATGTAAATA-GTACAGGCAAATTTTGTGGCACCAACAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATCAAACAAC---TTATGTGCC-GACACGGTC-ATTCCAT-GTACATTG-CCTTA-TCGCCCACATGCGTG-C---CCATCAAGAAGATAGTGGCATG-GGGTC-AAATGAGGCAATCAACATTGGAACTCC Costus_geothyrsus_BS6782 ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????AA--TGGGTTGACAGTCATTCA-TCAAGCCAATC---GTAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACTTTGG?-??ATGGG-CA--AAATT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGAGAGGGGGAGAGAGAG---------TATA-GCACCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GCACAGGCAAATTTTTTGGCACCAACAGCAACAA-TGGAC??-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATTAAACAAC---TTATGTGC??????????????????????????????????????????????????????????????????????????????????????????????????????????????? Costus_glaucus_Delft46325 ???????????????????????????????????????????????????????????????TTAGCTA---GCCAACAACAAAGAGGCCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCATTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT--TTACTTTGGA-AGATGGG-CA--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGGGAGAGAGAG---------TATA-GCACCGAGTCGTATTTCTCTTTTGA--AAGACTA-GGAAATA-GCACAGGCAAATTTTGTGGCACCAACACCAACAA-TGGACCA-AAC-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATTAAACAAC---TTATGTGCCAGACACGGTC-ATTCCAT-GTACATTG-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_guanaiensis_var._guanaiensis_R2666 ???????????????????????????CGTCCTTCGATGATGCCACACCCAA-CGCTTCCACCTTAGCTA---GCCAACAACAAAGAAGCCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCACTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TACA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACTTTGGA-AGATGGG-CA--AAAAT-C-CACGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGAGAGGGGGAGAGAGAG---------TATA-GCACCGAGTCATATTTCCCTTTTGA--AAGACTA-GTAAATA-GCACAGGCAAATTTTGTGGCACCAACAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATAAAACAAC---TTATGTGCCAGACACGGTC-ATTCCAT-GTACATTA-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_guanaiensis_var._macrostrobilus_CS00253 ???????????????????????????CGTCCTTCGATGATGCCACACCCAA-CGCTTCCACCTTAGCTA---GCCAACAACAAAGAAGCCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCACTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TACA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACTTTGGA-AGATGGG-CA--AAAAT-C-CACGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGAGAGGGGGAGAGAGAG---------TATA-GCACCGAGTCATATTTCCCTTTTGA--AAG?CTA-GTAAATA-GCACAGGCAAATTTTGTGGCACCAACAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATAAAACAAC---TTATGTGCCAGACACGGTC-ATTCCAT-GTACATTA-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_guanaiensis_var._tarmicus_KMN2811 ????????????????????????????????TTCGATGATGCCATACCAAA-CGCTTCCACCTTAGCTA---GCCAACAACAAAGAAGCCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCATTCA-ACAGGCAAATC---ATAGCCATGAGG-CC---TAAAGGGCACTCAACCAATAA-T-GCATGCTGCAT--CCGCGAGCACTCAAGGCACCAATGGTCT---TACTTTGGA-AGATGGG-CA--AAATT-C-CATGCAATCATCCAACAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGAGAGGG--AGAGAGAG---AG----TATA-GCACCGAGTCATATTTCTCTTTCGA--AAGACTA-GTAAATA-GCACAGGCAAATTTTTTGGCACCAACAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATTAAACAAC---TTATGTGCCAGACACGGTC-ATTCCAT-GTACATTA-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_laevis_CS01257 ???????????????????????????CGTCCTTCGATGATGCCATACCCAA-CGCTTCCACCTTAGCTA---GCCAACAACAAAGAAGCCA-TACTAAAGTGCCCAC-----GA--CGGGTTGACAGTCATTCA-ACAAGCGAATC---ATAGCCATGAGG-CC---TAAAAGGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGTACTCAAGGCACCAATGGTCT---TACTTTGGA-AGATGGG-CG--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-ACAGAGGGGGAGAGAGAG---------TATA-GCACCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GCACAGGCAAATTTTGTGGCACCAACAGCAACAAATGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATTAAACAAC---TTACGTGCCAGACACGGTC-ATTCCAT-GTACATTG-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_lasius_M9155 ?????????????????????????????????TCGATGATGCCATACCCAA-CGCTTCCACCTTAGCTA---GCCAACAACAAAGAAGCCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCATTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCATATCCACGAGCACTCAAGGCACCAATGGTCT---TGCTTTGGA-AGATGGA-CG--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGAGAGGGGGAGAGAGAG---------TATA-GCACCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GCACAGGCAAATTTTGTGGCACCAACAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATTAAACAAC---TTATGCGCCAGACACGGTC-ATTCCAT-GTACATTG-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_lateriflorus_M10331 ?????TGGCAGGATCAACCAGGTAGCACATCCTCGGATGATGCCATACCCAA-CGCTACTACCTTAGCAG---GCCAACAATAAAGAAGCCA-TGCTAAAGCACACAC-----GA--TGGATTGACAGTCATTCGCACAGATAAATC---TTAGCAATGAGG-CC---TAAT-GGCACTCAACCAATAA-T-GTACACTGCAT--CCACAAGCGCTCAAGGCACCGATGGTCT--TTCCTTGGGG-AGATGGGGAC--AAAAG-C-CACCCAATCATCCAAGAGG-CTATAGGCGCCATTGTGCACCCACTCCTATACCGCACATAA-C-GG-AAGGAGGGG-AGAGAAAG---AG----TATT-ACACCGAGTCATATTTCATTGATGA--AAGACTATGTACATA-ATACAGGCAAATCTGGTGGTACCAATAGCATCAA-TGGACCA-TAT-AATGAAGAGTTACACTAATTTCGGTTAGGTGCACAAGGCACAGAGCCCGCCATTACATGCAACAACTAAACCAC---TTACATGCC-GACACGGTC-ATTCTAT-GTACATTG-CCTTA-TCGCCCGCATGCGTT-C---ATATCAGGAAGATAGTCACAAG-GGGTC-AAATGAGACAATCAACATTGGAACTCC Costus_letestui_CS02331 ????????????????????????????????TCGGATGATGCCATACCCAA-CGCTGCCACCTTAGCAA---GCCAACAATAAAGAAGCTA-TGCTAAAGCACACAC-----GA--TGGATTGACAGTCATTCGCACAGATAAATC---TTAGCAATGAGG-CC---TAAT-GGCACTCAACCAATAA-T-ATACACTGCAT--CCACAAGCACTCAAGGCATCGATGGTCT--TTCCTTGGGG-AGATGGGGGC--AAAAG-C-CAGACAATCATCCAAGAGG-CCATAGGCGCCACTATGCACCCACTCCTATACCGCACATAA-C-GG-AGGGAGGGG-AGAGAGAG---------TATA-GCACCGAGTCATATTTCATTGATTA--AAGACTATGTACATA-ATACAGGCAAAACTCATGGTACCAATAGCATCAA-TGGACCA-TAT-AATGAAGGGTTGCACTAATTTCGGTTGGGTACACAAGGCACAGAGCCCGCCATTACATGCAACAACTAAACCAC---TTATATGCC-GACACGGTC-ATTCTAT-GTACATTG-CCTTA-TCGCCCGCATGCGTT-C---ATATC??????????????????????????????????????????????????? Costus_leucanthus_19961105001 ????????????????????????????????TTCGATGATGCCATACCCAA-CGCTTCCACCTTGGCTA---GCCAACAACAAAGAAGCCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCATTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACTTTGGA-AGCTGGG-CA--AAAAT-C-CATGCAATCGTCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGAGAGGGGGAGAGAGAG---------TATA-GCACCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GCACAGGCAAATTTTTTGGCACCAACAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATTAAACAAC---TTATGTGCCAGACACGGTC-ATTCCAT-GTACATTA-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_aff._ligularis_19980923003 ????????????????????????????????????ATGATGCCATACCCCA-CGCTACCACCCTAGCTG---GCCAACAATAAAGAAGCCA-TACTAAAGCGCACAC-----AA--TGGGTTGACAGTCATTCATACAGACAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACAAGCACTCAAGGCACCAATGGTCT---TACTTTGAG-AGATGGG-GT--AAAAT-C-CATGCAATCATCTAAGAGG-CCATAGGCGCCACTATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGG-AGAGAGAG---------TATA-GCACCGAGTCATATTTTTCTTATGA--AAGACTATGTAAATA-GTACAGGCAAATTTTGTGGCACCAATAGCAACAA-TGGACCA-TAT-AATGAAGGATTGCACTAATTTCGGTTGGGTGCACAAGGCACAAAGCCCGCCATTATATGCAACTATTAAACAAC---TTATGTGCC-GACACGGTC-ATTCCAT-GTACATTG-TCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_aff._ligularis_20050100003 ?????????????????????????????????????????????????????????ACCACCCTAGCTG---GCCAACAATAAAGAAGCCA-TACTAAAGCGCACAC-----GA--TGGGTTGACAGTCATTCATACAGACAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACAAGCACTCAAGGCACCAATGGTCT---TACTTTGAG-AGATGGAGGT--AAAAT-C-CATGCAATCATCTAAGAGG-CCATAGGCGCCAC?ATGCACCCACTCC??TACCGCACAAAA-C-GG-AGGGAGGGG-AGAGAGAG---------TATATGCACCGAGTCATATTTTTCTTATGA--AAGACTATGTAAATA-GTACAGGCAAATTTTGTGGCACCAATAGCAACAA-TGGACCA-TAT-AATGAAGGATTGCACTAATTTCGGTTGGGTGCACAAGGCACA?AGCCCGCCATTATATGCAACTATTAAACAAC---TTATGTGCC-GACACGGTC-ATTCCAT-GTACATTG-TCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_aff._ligularis_M10226 ?CTACTGGCAGGATCAACCAGGTAGCACGTCCTTTAATGATGTCATACCCAA-CGCTACCACCCTAGCTG---GCCAACAATAAAGAAGCCA-TACTAAAGCGCACAC-----AA--TGGGTGGACAGTCATTCATACAGACAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACATTGAG-AGATGGG-AT--AAAAT-C-CATGCAATCATCTAAGAGG-CCATAGGCGCCACTGTGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGG-AGAGAGAG---------TATA-GCATCGAGTCATATATCTCTTATGA--AAGACTTTGTAAATA-GTACAGGCAAATTTTGTGGCACCAATAGCAACAA-TGGACCA-TAT-ACTGAAGGATTGCACAAATTTCGGTTGGGTGCACATGGCACAGAGCCCGCCATTATATGCAACTATTAAACATC---TTATGTGCC-GACACGGTC-ATTCCAT-GTACATTG-TCTTA-TCGCCCGCATGCGTG-C---CCATCAAGAAGATAGTGGCATA-GGGTC-AAATGAGGCAATCAACATTGGAACTCC Costus_liliaceus_M9995 ACTACTGGCAGGATCAACCAGGTAGCACATCCTCGGATGATGCCATACCCAA-CGCTACTACCTTAGCTG---GCCAACAATAAAGAAGCCA-TGCTAAAGCACACAC-----GA--TGGATTGACAGTCATTCGCACAGATAAATC---TTAGCAATGAGG-CC---TAAT-GGCACTCAACCAATAA-T-GTACACTGCAT--CCACAAGCACTCAAGGCACCGATGGTCT--TTCCTTGGGG-AGATGGGGAC--AAAAG-C-CACCCAATCATCCAAGAGG-CTATAGGCGCCACTGTGCACCCACTCCTATACCGCAAGTAA-C-GG-AAGGAGGGG-AGAGAAAG---AG----TATA-ACACCGAGTCATATTTCATTGATGA--AAGACTATGTACATA-ATACAGGCAAATCTCGTGGTACCAATAGCATCAA-TGGACCA-TAT-AATGAAGAGTTACACTAATTTCGGTTAGGTGCACAAGGCACAGAGCCCGCCATTACATGCAACAACTAAACCAC---TTACATGCC-GACACGGTC-ATTCTAT-GTACATTG-CCTTA-TCGCCCGCATGCGTT-C---ATATCAGGAAGATAGTCACAAG-GGGTC-AAATGAGACAATCAACATTGGAACTCC Costus_lima_R3014 ????????????????????????????????????????????????????????????????TAGCTA-TAGCCAACAACAAAGAAGCCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCATTCA-ACAAGCAAATC---ATAGACATGAGG-CC---AAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACCCAAGGCACCAATGGTCT---TACTTTGGA-AGATGGG-CG--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGG-AGAGAGAG---------TAGA-GCACCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GCACAGGCAAATTTTGTGGCACCAACAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACGGAGCCCGGAATTATAAGCAACTATTAAACAAC---TTATATGCT-GAC?CGGTC-ATTCCAT-GTACATTG-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_lima_var._scabremarginatus_BTM750400 ????????????????????????????????TTCGATGATGCCATACCCAA-CGCTACCACCTTAGCTA-TAGCCAACAACAAAGAAGCCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCATTCA-ACAAGCAAATC---ATAGACATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACCCAAGGCACCAATGGTCT---TACTTTGGA-AGATGGG-CG--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGG-AGAGAGAG---------TAGA-GCACCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GCACAGGCAAATTTTGTGGCACCAACAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACGGAGCCCGGAATTATAAGCAACTATTAAACAAC---TTATATGCT-GACACGGTC-ATTCCAT-GTACATTG-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_loangensis_M10184 ACTACTGGCAGGATCAACCAGGTAGCACGTCCTTTAATGATGCCATACCCCA-CGCTACCACCCTAGCTG---GCCAACAATAAAGAAGCCA-TACTAAAGCGCACAC-----AA--TGGGTTGACAGTCATTCATACAGACAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACTTTGAG-AGATGGG-GT--AAAAT-C-CATGCAATCAATTAAGAGG-CCAAAGGCGCCACTATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGG-AGAGAGAG---------TATA-GCACCGAGTCATATTTTTCTTATGA--AAGACTATGTAAATA-ATACAGGCAAATTTTGTGGCACCAATAGCAACAA-TGGACCA-TAT-AATGAAGGATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATTAAACAAC---TTATGTGCC-GACACGGTC-ATTCCAT-GTACATTG-TCTTA-TCGCCCACATGCGTG-C---CCATCAAGAAGATAGTGGCATA-GGGTC-AAATAAGGCAATCAACATTGGAACTCC Costus_longibracteolatus_R3003 ??????????????????????????????????????GATGCCATACCCAA-CGCTTCCACCTTAGC-G-T-GCCAACAACAAAGAGGCCA-TACTAAAGTGCACAC-----GA--CGGGTTGACCGTCATTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACTTTGGA-AGATGGG-CG--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAAAC-GG-AGGGAGGGGGAGAGAGAA---------TATA-GCGCCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GCACAGGCAAATTTTGTGGCACCACCAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATTAAACAAC---TTATGTGCCAGACACGGTC-ATTCCAT-GTACATTG-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? 'Costus lucanusianus (yellow) Breteler5297 ' ???????????????????????????CGTCCTTCGATGATGCCATACCCAA-CGCTACCACCTTAGATA---GCCAACAACAAAGAAGCCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCATTCACACAAGCAAATC---ATAGCCATGAGG-CC---TAAG-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACTTTGGA-AGATGAG-CC--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGG-AGAGAGAG---------TATA-GCACCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GTACAGGCAAATTTTGTGGCACCAACAGCAACAA-TGGACCA-TAT-ATTGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATTAAACAAC---TTATGTGCC-GACACGGTC-ATTCCAT-GTACATTG-CCTTA-TCGCCCAC???????????????????????????????????????????????????????????????????? Costus_lucanusianus_M10000 ?CTACTGGCAGGATCAACCAGGTAGCACGTCCTTCGATGATGCCATACCCAA-CGCTACCACCCTAGCTA---GCCAA------AGAAGCCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCATTTACACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACTTTGAG-AGATGGG-GC--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGG-AGAGAGAG---------TATA-GCACCAAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GTACAGGCAAATTTTGTGGCACCAACAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATTAAACAAC---TTATGTGCC-GACACGGTC-ATTCCAT-GTACATTA-CCTTA-TCGCCCACATGCGTG-C---CCATCAAGAAGATAGTGGCATG-GGGTCAAAATGAGGCAATCAACATTAGAACTC? Costus_maboumiensis_M10227 ??????????GGATCAACCAGGTAGCACGTCCTTCGATGATGCCATACCCAA-CGCTACCACCCTAGCTA---GCCAACAATAAAGAAGCCA-TACTAAAGTGCACAC-----GA--TGGGTTGGCAGTCATTCACAGAAGC--ATGG--AAAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACTTTGAG-AGATGGG-GC--AAAAT-C-CATGCAATCATCCGAAAGG-CCATAGGCACCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGG-AGAGAGAG---------TATA-GAACCGAATCATATTTCTCTTTTGA--AATACTA-GTAAATA-GTACAGGCAAATTTTGTGGCACCAACAACAACAA-TGGACCA-TAT-AATGAAGGATTGCACTAATTTCGGTTGGGTGCACAAGGCACAAAGCCCGCCATTATATGCAATTATTAAACAAC---TTATATGCC-GACACGGTC-ATTCCAT-GTACATTA-CCTTA-TCGCCCACATGCGTG-C---ACATCAAGAAGATAGTGGCATG-GGGTC-AAATGAAGCAATCAACATTAGAAC??? Costus_aff._afer_WJK943683 ??????????????????????????????????????????CCATACCCAA-CGCTACCACCTTAGATA---GCCAACAACAAAGAAGCCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCATTCACACAAGCAAATC---ATAGCCATGAGG-CC---TAAG-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACTTTGGA-AGATGAG-CC--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGG-AGAGAGAG---------TATA-GCACCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GTACAGGCAAATTTTGTGGCACCAACAGCAACAA-TGGACCA-TAT-ATTGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATTAAACAAC---TTATGTGCC-GACACGGTC-ATTCCAT-GTACATTG-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_malortieanus_M9791 ????????????????????????????????????????????????CCAA-CGCTTCCACCTTAGCTA---GCCAACAACAAAGAAGTCA-TACTAAAGTGCACAC-----GA--TGGGTTGGCAGTCATTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACTTTGGA-AGATGGG-CG--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGGGAGAAAGAG---------TATA-GCACCGAGTCATATTTCTCTTTTGA--GAGACTA-GTAAATA-GCACAGGCAAAGTTTGTGGCACC?ATAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTACATGCAACTATTAAACAAC---TTAAGTGCCAGACACGGGC-ATTCCAT-GTGCATTG-CCTTT-TCGC???????????????????????????????????????????????????????????????????????? Costus_montanus_R2972 ??????????????????????????????????????????????????????????????????????????????CAACAAAGAAGCCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCACTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACAAGCACTCAAGGCACCAATGGTCT---TACTTTGGA-AGATGGG-CG--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGG-AGAGAGAG---------TAGA-GCACCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GCACAGGCAAATTTTGTGGCACCAACAGCATCAA-TGGACCA-?GT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCAATTATATGCAACTATTAAACAAC---TTATATGCT-GACACGGTC-ATTCCAT-GTACATTG-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_nitidus_M9524 ?????????????????????????????????????????GCCATACCCAA-CGCTTCCACCTTAGCTA---GCCAACAACAAAGAAGTCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCATTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCGCCAATGGTCT---TACTTTGGA-AGATGGG-CG--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGGGAGAGAGAG---------TATA-GCACCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GCACAGGCAAAGTTTGTGGCACCAACATCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTACATGCAACTATTAAACAAC---TTAAGTGCCAGACACGGTC-ATTCCAT-GTACATTG-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_osae_M9501 ???????????????????????????????????????????????CCCAA-CGCTACCACCTTAGCTA---GCCAACAACAAAGAAGCCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCATTCA-ACAAGCAAATC---AAAGCCATGAGG-CCTCCTAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACTTTGGA-AGATGGG-CG--AAAAT-C-CATGCAATCATCCAAAAGG-CCATA?GCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGG-AGAGAGAG---------TAGA-GAACCGAGTCATATTTCTCTTTTGA--AAGACTG-GTAAATA-GCACAGGCAAATTTTGTGGCACCAACAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACGGAGCCCGCAATTATATGCAACTATTAAACAAC---TTATATGCT-GACACGGTC-ATTCCAT-GTACATTG-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_phaeotrichus_CS02323 ?????????????????????GTAGCACGTCCTTCGATGATGCCATACCCAA-CGCTACCACC-TAGCTA---GCCAACAACAAAGAAGGCA-TACTAAAGCGCACAC-----GA--TGGGTTGACAGTCATTCGCACAGACAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATACTGCAT--CCACAAGCACTCAAGGCACCAATGGTCT---TACTTTGAG-AGATGGG-AC--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGAACCAATATGCACCCACTCCTATACCGCACAAAA-C-GG-AAGGAGGGG-AGAGAGAG---------TATA-GCACCGAGTCATATTTCTCTTATGA--AAGACTATGTAGATA-GTACAGGCAAAGTTTGTGGCACCAACAACAACAA-TGGACCA-TAT-AATGAAGGATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCGATTACATGCAACTATTAAACAAC---TTATGTGCC-GACACGGTC-ATTCCAT-GTACATTG-CCTAA-TCGCCCACAAG--TG-C---CCATCAAGAAGAAAGTGGGAAG-GGGTC-AAATGAGG??????????????????? Costus_aff._phyllocephalus_BB870057 ???????????????????????????CGTCCTTCGATGATGCCATACCCAA-CGCTACCACCCTAGCTA---GC------CAAAGAAGCCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCATTTACACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACTTTGAG-AGATGGG-GC--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGG-AGAGAGAG---------TATA-GCACCAAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GTACAGGCAAATTTTGTGGCACCAACAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATTAAACAAC---TTATGTGCC-GACACGGTC-ATTCCAT-GTACATTA-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_aff._phyllocephalus_M10389 ?????????????????????????????????????????????TACCCAA-CGCTACCACCCTAGCTG---GCCAACAATAAAGAAGCCA-TACTAAAGTGCACAC-----GA--TGGGTTGGCAGTCATTCACACAAAC--ATGG--AAAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GSATGCTGCAT--CCMCSARCACTCAAGGSACCAATGGTCT---TAYTTTGAR-AGATGGG-GM--AAAAT-C-CATGCAATCATCCGAAAGG-CCATAGGCACCACCATGCACCCMCTCYTATACCGCACAAAA-R-GG-AGGGAGGGG-AGAGAGAG---------TATA-GAACCGAATCATATTTTTYTTTTGA--AATACTA-GTAAATA-GTACAGGCAAATTTTGTGGCACCAACAACAACAA-TGGACCA-TAT-AATGAAGGATTGCACTAATTTCGGTTGGGTGCACAAGGCACAAAGCCCGCCATTATATGCAATTATTAAACAAC---TTATATGCC-GACACGGTC-ATTCCAT-GTACATTR-CCTTA-TCGCCCACATGCGTGCC---ACATCAAGAAGATAGTGGCA???????????????????????????????????? Costus_pictus_WJK943691 ???????????????????????????CGTCCTTCGATGATGCCATACCCAA-CGCTACCACCTTAGCTACTAGCCAACAACAAAGAAGCCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCATTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACTTTGGA-AGATGGG-CG--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGG-AGAGAGAG---------TATA-GCACCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GCACAGGCAAATTTTGTGGCACCAACAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATTAAACAAC---TTATGTGCC-GACACGGTC-ATTCCAT-GTACATTG-CCTTA-TCGCCCAC???????????????????????????????????????????????????????????????????? Costus_plicatus_WJK945376 ???????????????????????????CGTCCTTCGATGATGCCATACCCAA-CGCTTCCACCTTAGCTA---GCCAACAACAAAGAAGCCA-TACTAAAGTGCACAC-----GA--TGGGTTGACGGTCATTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCCCTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACTTTGGA-AGATGGG-CG--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAAAC-GG-AGGGAGGGGGAGAGAGAA---------TATA-GCGCCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GCACAGGCAAATTTTGTGGCACCAACAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATTAAACAAC---TTATGTGCCAGACACGGTC-ATTCCAT-GTACATTG-CCTTA-TCGCCCACATGCGTG-C---CCA????????????????????????????????????????????????????? Costus_productus_R2693 ???????????????????????????CGTCCTCCGATGATGCCATACCCAA-CGCTTCCACCTTAGCTA---GCCAACAACAAAGAAGCCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCATTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACTTTGGA-AGATGGG-CG--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTACACCGCACAAAA-C-GG-AGGGAGGGGGAGAGAGAG---------TATA-GCACCGAGTCATATTTCTCTTTTGA--AAGACTA-ATAAATA-GCACAGGCAAATTTTGTGGCACCAACAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTACATGCAACTATTAAACAAC---TTATGTGCCAGACACGGTC-ATTCCAT-GTACATTG-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_pulverulentus_WJK943680 ???????????????????????????CGTCCTTCGATGATGCCATACCCAA-CGCTTCCACCTTAGCTA---GCCAACAACAAAGAAGTCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCATTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCCAGGTGCCAATGGTCT---TACTTTGGA-AGATGGG-CG--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGGGAGAGAGAG---------TATA-GCACCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GCACAGGCAAAGTTTGTGGCACCAACAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTACATGCAACTATTAAACAAC---TTAAGTGCCAGACACGGTC-ATTCCAT-GTACATTG-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_quasiappendiculatus_CS99233 ???????????????????????????CGTCCTTCGATGATGCCATACCCAA-CGCTTCCACCTTAGCTA---GCCAACAACAAAGAAGTCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCATTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACTTTGGA-AGATGGG-CG--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGGGAGAAAGAG---------TATA-GCACCGAGTCATATTTCTCTTTTGA--GAGACTA-GTAAATA-GCACAGGCAAAGTTTGTGGCACCGATAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTACATGCAACTATTAAACAAC---TTAAGTGCCAGACACGGTC-ATTCCAT-GTACATTG-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_ricus_R2970 ??????????????????????????????????????????????????AA-CGCTTCCACCTTAGCTA---GCCAACAACAATGAAGTCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCATTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCGCCAATGGTCA---TACTTTGGA-AGATGGG-CG--AAATT-C-CATGCAATCATCCAAAAGG-CCATACGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGGGAGAGAGAG---------TATA-GCACCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GCACAGGCAAAGTTTGTGGCACCAACAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTACATGCAACTATTAAACAAC---TTAAGTGCCAGACACGGTC-ATTCCAT-GTACATTG-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_scaber_R2253 ???????????????????????????CGTCCTTCGATGATGCCATACCCAA-CGCTTCCACCTTAGCTA---GCCAACAACAAAGAAGTCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCATTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCGCCAATGGTCT---AACTTTGGA-AGATGGG-CG--AAAAT-C-CATGCAATCATCCACAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGGGAGAGAGAG---------TATA-GCACCGAGTCATATTTCTCTTTTGA--AAGACTA-GTTAATA-GCACAGGCAAAGTTTGTGGCACCAATAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTACATGCAACTATTAAACAAC---TTAAGTGCCAGACACGGTC-ATTCCAT-GTACATTG-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_spectabilis_WJK976118 ??????????????????????????????????????GATGTCATACCCAA-CAAGAACGCCTTAGCTG---GCAAGCAATAAAGATGTCA-TGCTAAAGCGCACAC-----GA--TGGGCTGACAGTCATTCGTAGAGATAAATC---ATAGCAATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GTACACTGCAT--CCACAAGCACTCAAGGCACCGATGG-CT---T-CCTTGGAGAGATAGTGGC--AAAAG-C-CATGCAATCATCCAAGAGC-CAATAGGCGCTATTGTGCACCCACTCCTATACCGCATAAAA-T-GT-GTGGAGGG-----GAGAG---AGAG--TATA-GCACCGAGTCATATTTCACTCATGA--AAGACTATGTATATA-GCACAGGCAAATATCGTGGCACCAATAGCTTCAA-TGGTCCATAA--AATGAAATATTGCACAAATTTCGGTTGGGTGCACAAGGCACGGAGCCCGCCATTACATGCAATAATTAAACCAC---TTATATGCC-GACACGGTC-ATTCTAT-GTGCATTG-CCTTA-TCGCCCACATGCGTG-C---CCATCAAGAAGATAGTGGCAAG-GGGTCA-AATGAGGCAATCAACATTG??????? Costus_spiralis_M9335 ????????????????????????????????TTCGATGATGCCATACCCAAACGCTTCCACCTTAGCTA---GCCAACAACAAAGAAGCCA-TACTAAAGTGCACAC-----GA--TGGGCTGACAGTCATTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCGAGGCACCAATGGTCT---TACTTTGGA-AGATGGG-CA--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGAGAGGGGGAGAGAGAG---------TATA-GCACCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GCACAGGCAAATTTTTTGGCACCAACAGCAACAT-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATTAAACAAC---TTATGTGCCAGACACGGTC-ATTCCAT-GTACATTA-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_stenophyllus_L750305 ???????????????????????????CGTCCTTCGATGATGCCATACCCAA-CGCTACCAACTTAGCTA---GCCAACAACAAAGAAGCCA-TACTAAAGTGCACAC-----GA--CGGGTTGACAGTCATTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACAAGCACTCAAGGCACCACTGGTCT---GACCTTGGA-AGATGGG-CG--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAG-C-GG-AGGGAGGGG-AGAGAGAG---------TATA-GCACCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GCACAGGCAAATTTTGTGGCACCAACAGCAACAA-TGGACCA-TAC-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATTATACAAC---TTATGTGCC-AACACGGTC-ATTCCAT-GTACATTG-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_aff._tappenbeckianus_Tva3675 ?????????????????????GTAGCACGTCCTTCGATGATGCCATACCCAA-CGCTACCACC-TAGCTA---GCCAACAATAAAGAAGGCA-TACTAAAGCGCACAC-----GA--TGGGTTGACAGTCATTCGCACAGACAAATC---TTAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATACTGCAT--CCACAAGCACTCAAGGCACCAATGGTCT---TACTTTGAG-AGATGGG-AG--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCACCAACATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGG-AGAGAGAA---------TATA-GCACCGAGTCATATTTCTTTTATGA--AAGACTATGTAAATA-GTACAGGCAAAGTTTGTGGCACCAACAACAACAA-TGGACCA-TAT-AATGAAGGATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCGATTATATGCAACTATTAAACAAC---TTATATGCC-GACACGGTC-ATTCCAT-GTACATTG-CCTAA-TCGCCCACAAGCGTG-C---CCATCAAGAAGAAAGTGGCAAG-GGGTC-AAATAAGGCAATCAACATTG??????? Costus_aff._tappenbeckianus_20050100001 ????????????????????????????????????????????????????????TAACACCCTAGCTA---GCCAACAACAAAGAAGCCA-TACTAAAGCGCACAC-----GA--TGGGTTGACAGTCATTCACACAGACAAATC---AAAGCCATGAGG-?C---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCTTATTATTTTGAG-AGATGGG-GT--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGG-AGAGAGAT---------TATA-GCAACGAGTCATATTTCTCTTATGA--AAGACTATGTACATA-GTACAGGCAAATTTTGTGGCACCAACAACAAAAA-TGGACCA-TAT-AATGAAGGATTGCATTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATTAAACAAC---TTATGTGCC-GACACGGTC-ATTCC?????????????????????????????????????????????????????????????????????????????????????????????? Costus_aff._tappenbeckianus_20050100002 ????????????????????????????????TTCGATGATGCCATACCCAA-CGCTACCAC-CTAGCTA---GCCAACAATAAAGAAGGCA-TACTAAAGCGCACAC-----GA--TGGGTTGAC?GTCATTCGCACAGACAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATCT-T-GCATACTGCAT--CCACAAGCACTCAAGGCACCAATGGTCT---TACTTTGAG-AGATGGG-AC--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCACCAACATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGG-AGAGAGAA---------TATA-GCACCAAGTCATATTTCTTTTATGA--AAGACTATGTAAATA-GTACAGGCAAAGTTTGTGGCACCAACAATAACAA-TGGACCA-TAT-AATGAAGGATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCGATTATATGCAACTATTAAACAAC---TTATATGCC-GACACGGTC-ATTCCAT-GTACATTG-CCTAA-TCGCCCACAAGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_aff._tappenbeckianus_WJK943697 ??????????????????????????????????CGATGATGCCATACCCAA-CGCTACCACCT-AGCTA---GCCAACAATAAAGAAGGCA-TACTAAAGCGCACAC-----GA--TGGGTTGACAGTCATTCGCACAGACAAATC---TTAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATACTGCAT--CCACAAGCACTCAAGGCACCAATGGTCT---TACTTTGAG-AGATGGG-AG--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCACCAACATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGG-AGAGAGAA---------TATA-GCACCGAGTCATATTTCTTTTATGA--AAGACTATGTAAATA-GTACAGGCAAAGTTTGTGGCACCAACAACAACAA-TGGACCA-TAT-AATGAAGGATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCGATTATATGCAACTATTAAACAAC---TTATATGCC-GACACGGTC-ATTCCAT-GTACATTG-CCTAA-TCGCCCACAAGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_talbotii_20030109009 ????????????????????????????????TCGGATGATGCCATACCCAA-CGCTATCACCTTAGCTS---GCCGACAATAAAGAAGCCA-TGCTAAAGCACAAGC-----GA--TGGGTTGACAGTCATTCATATGGATAAATC---AAAGGAATGAGG-CC---TAAT-GGCACTCAACCAATAA-T-GTACACTGCAT--CCACAAGCATTCAAGGCACCGATGGTCT---TCCTTGGGG-AGATGGGGGC--AAAAG-C-CATGCAATCATCCAAGAGG-CCATAGGCACCGCTATGCACCCACTCCTATACTGCACAAAA-C-AG-AGGGAGAGGGAGAGAGAG---AGAG--TATA-GCACCGAGTCATATTTCACGAATGA--AAGACTATGTACATA-ACACAGGCAAATCGCGTGGTACCAATGGCAACAA-TGGACCA-AAT-AGTGAAGGGTTGCACTAATTTCGGTTGAGAGCACAAGGCGCAGAGCCCGCCATTACATGCAACAAATAAACCAC---TTACATGCC-GACACGGTC-ATTCTAT-GTACACCG-CCCTA-TCGCCCACATGCATC-C---ATATG??????????????????????????????????????????????????? Costus_varzearum_WJK945379 ???????????????????????????CGTCCTTCGATGATGCCATACCCAA-CGCTTCCACCTTAGCTA---GCCAACAACAAAGAAGCCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCATTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCGGGGCACCAATGGTCT---TACTTTGGA-AGATGGG-CG--AAAAT-C-CACGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGAGAGGGGGAGAGAGAG---------TATA-GCACCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GCACAGGCAAATTTTTTGGCACCAACAGCAACAA-TGGACCG-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATTAAACAAC---TTATGTGCCAGACACGGTC-ATTCCAT-GTACATTA-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_villosissimus_KMN632 ???????????????????????????CGTCCTTCGATGATGCCATACCCAA-CGCTTCCACCTTAGCTA---GCCAACAACAAAGAAGCCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCATTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCTCTCAACCAATAA-T-GCATTCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TTCTTTGGA-AGATGG--ACA-AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGAGAGGGGGGGAGAGAG---------TATA-GCACCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GCACAGGCAAATTTTGTGGCACCAACAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATTAAACAAC---TTATGTGCCAGACACGGTC-ATTCCAT-GTACATTG-CCCTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_vinosus_M9568 ??????????????????????????????????????????????????????????????????????????????????????????????????????????G------GA--TGGGTTGGCAGTCATTCA-ACAAGCAAACA---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCTC-TTACTTTGGA-AGATGGG-CG--AAAAT-C-CGTGCAATCATCCAAAAGG-CCATAGGAGCAACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGGGGGAGAGAG---------TATA-GCACCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GCACAGGCAAATTTTGTGGCGCCAACAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATTAAACAACAACTT?TGTGCC-GACGCGGTG-GTTCCAT-GTTCATTG-CCTTA-TCGCCCGCATGCGTG-C---CCGTC??????????????????????????????????????????????????? Costus_wilsonii_M9507 ???????????????????????????CGTCCTTCGATGATGCCATACCCAA-CGCTTCCACCTTAGCTA---GCAAACAACAAAGAAGCCA-TACTAAAGTGCCCAC-----GA--CGGGTTGACAGTCATTCA-ACAAGCGAATC---ATAGCCATGAGG-CC---TAAAAGGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGTACTCAAGGCACCAATGGTCT---TACTTTGGA-AGATGGG-CG--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAAGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-ACAGAGGGGGGGAGAGAG---------TATA-GCACCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GCACAGGCAAATTTTGTGGCACCAACAGCAACAAATGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTATATGCAACTATTAAACAAC---TTACGTGCCAGACACGGTC-ATTCCAT-GTACATTG-CCTTA-TCGCCCACAAGCGTG-C---CCATC??????????????????????????????????????????????????? Costus_woodsonii_CS01264 ??????????????????????????????????????????????????????????????????GCTA---GCCAACAACAAAGAAGTCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCATTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-T-GCATGCTGCAT--CCACGAGCACTCAAGGCGCCAATGGTCT---TACTTTGGA-AGATGGG-CG--AAAAT-C-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATGCACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGGGAGAGAGAG---------TATA-GCACCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GCACAGGCAAAGTTTGTGGCACCAACAGCAACAA-TGGACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTACATGCAACTATTAAACAAC---TTAAGTGCCAGACACGGTC-ATTCCAT-GTACATTG-CCTTA-TCGCCCACATGCGTG-C---CC?????????????????????????????????????????????????????? Costus_zingiberoides_BTM860001 ????????????????????????????????TTCGATGATGCCATACCCAA-CGCTTCCACCTTAGCAA---GCCAACAACAAAGAAGCCA-TACTAAAGTGCACAC-----GA--TGGGTTGACAGTCATTCA-ACAAGCAAATC---ATAGCCATGAGG-CC---TAAA-GGCACTCAACCAATAA-C-GCATGCTGCAT--CCACGAGCACTCAAGGCACCAATGGTCT---TACTTTGGA-AGATGGG-CG--AAAATCC-CATGCAATCATCCAAAAGG-CCATAGGCGCCACCATAAACCCACTCCTATACCGCACAAAA-C-GG-AGGGAGGGGGACAGAGCG---------TATA-GCACCGAGTCATATTTCTCTTTTGA--AAGACTA-GTAAATA-GCACAGGCAAATTTTGTGGCACCAACAG---------GACCA-TAT-AATGAAGAATTGCACTAATTTCGGTTGGGTGCACAAGGCACAGAGCCCGCCATTAAATGCAACTATTAAACAAC---TTATGTGCTAAACACGGTC-ATCCCAT-GTACATTG-CCTTA-TCGCCCACATGCGTG-C---CCATC??????????????????????????????????????????????????? Chamaecostus_cuspidatus_RB584184 ???????????????????????????????????????????????CCCAT-TGCTGCCACCGTAGCTA--GGCCAACAATGAAGAGGCCA-CGCCATAGCGCACAC-----GA--TGGGCAGGCGGTCATTCAAGTGCATAATAT---ATGACGTATAGG-CC---CATAGGGCATTCCGCCAATA--TAATACGCTGCAT--CCGCAAGCACCGAAGCCACTCATTATCC---CAGCTTGGAGATTTAGTGAGT-AAAGT-CACAT--AATCATCCAAGGGG-CCACGAGCGCTACTATGTAGCCACTCCCATACCGCACTGCA-C-GG-AGGGAGAGGGAGAAAGGA---------GATG-ATACCGAGTCACATTTC----GTGA-C-AAACTACGTAGGCA-ACACAGGCAAAGCATGAGGCCCCAATAACATCAT-TGGGTTA-TAT-AATGAGGAGATGCAGTAAGGATGGTTAGGTACACAAGGCACAGAGCCCACCCTTACAAGCAAATACTATGCAAC---TTATGCGCC-GACCCGGTC-ATTCTACCATTTATCA-CCCCA-TCGCCCATATGCATG-T---ATATCATAAAGATAATGCAAAT-GGATC-AAATGAAGCAGTCAACAGCTGAACTCC Chamaecostus_lanceolatus_pulchriflorus_RB550388 ???????????AATCAACCAGGTAGCACGTCCTCATATGACACCATGCCCAT-TGCTGCCACCGTAGCTG---GCCAACAATGAAGAGACCA-CGCCACAGCGCACGC-----GA--TGGGCAGGCCGTCATTCAAGCACACGATAT---ATGACGTATA-G-CC---CATAGGCCACTCCGCCGATA--TAATACGCTGCAT--CCGCGAACACTTAGGCCACCCG-TGTCC---C-GGTTGGAGAGTTAGTGAGT-AAGGT-CACAT--AATTATCCAAAGGG-CCACGAGCGGCACCGTGTGGCCACTCCCGTACCGAGTTACA-C-GG-AGGGAGGGGGACAAAGAA---------TATG-ATACCGAGTCACATTTC----GTGA-C-AGACCACGTAGGCA-ACACAGGCAAAGCATGAGGTCCCAATAACATTTT-TGGGTTC-TAC-AATGAGGAGATGCAGTAACGACGGTTGGGTGCGCAAGGCACGGAGCCCGCCTTCACAAGCAAATGTCAAGCAAC---TTATGTGCC-GACACGGTC-ATTCTACCGTACATCA-CCCCA-TCGCCCATATGCAAG-T---ATATCACAAGGATA?????????????????????????????????????????? Chamaecostus_subsessilis_RB584183 ACTACTGGCAGGATCAACCAGGTAGCACGTCCTCATATGACGCCATGCCCAC-TGTTGCCACCGTAGCTG--AGCCAACAATGAAGAGGCTA-CACCGCAGCGCACAC-----AA--TGGGCAGGCAGTCATTCAAGTACATAATAT---ATGACGTATA-C-CC---CATAGGGCATTTCGCCAATA--GAATACGCTGCAT--CCACAAGCACTCATGCCACCCATTGCAC---CA-CTTTGAGATGTAGTGAGT-AAACT-CACAT--AATCATCCAAGGGGGCCATAAGCAACACTATGTAGCCACTCCCATACCGCACTGGA-C-GG-AGGGAGAGGAAAAAAGAA---------GATG-ATATCGAGTCACATTTC----GTGA-C-AGACTACGTAGGCA-ACACAGGCAAAGCATAAGACCCTAATAACATCAT-TGGGTCA-TAT-AATGAGGAGATGCAGTAAGGGCGGTTAGGAGCACAAGGCACAGAGCCCACCCTTACAAGCAAATGTCATACAA----TTATGCACC-GACACGGTAGATTCTACCATTTATCA-CCCCA-TCGCCCATATGCATG-T---ATATCACAA??????????????????????????????????????????????? Monocostus_uniflorus_WJK750065 ??????????????????????????????????????GACGTCGTGCTCGT-CACCCGCAACGCGGTTG---GCCTGCAATGAAGAGGCCA-AGCT---GTG-AC?CGCAAGGAGACGGGAGGGCGGTCATTCCAACGAACAAAAC---ATGGCATGGAGG-CC---GAGGTGGTCGT--GTCAATAA-ACGCACGCTGCAC--CCGCGAGCACTTGAGGTGCTCGTTCTTT---C-GAT?GGA?AGTTGGTGA-T?GAAGT-C--ACGCGATCGTCCGAGGGG-ACACGGGCACCGTTGTGTAGCCACTCCCATGCCGCACTACG-C-GG-AGGGAGAG-GAGAGAGAG---------GATG-AGGCCGAATCATATTTC----ATGT-C?AG-CTATGTAGGCA-ACACAAGCAAAGCTCGCGGCACCAATAGCGTGAT-TGGGCCATTAA-AATGATTGGGTGCAGTAAAGACGGTTGGGTGCGCATGGAACCGAGCCCACCGTTATATGCAAATATCATACATT---TTATATGCC-GACACAGTC-ATTCCACCGTATATCACCCCCAATCGCCCACATTCC-------ACGTTAAGAAAATGGTGTTATG-GGGTCAAAATGGGAAGGTCAACAATAAAACTCC Dimerocostus_strobilaceus_CS01272 ACTACTGGCAGGATCAACCAGGTAGCACGTCCTCGCATGACGCCGTGCCCGT-CCCCGGTGCCGCGGTTG---GCCAGCGATGGCGAGGCCA-TGCC---GTGG-CGCGCGGGAAGGCAGGCCGGCGGTCATTCCAACGAACAGAAC---ATGGCGTA-AGGGCC---CAGACGGCCGT--GCCAATAA-ACGCACGCTGCAT--CCGCGAGCACTAAGGGCGCCCGTGCTTC---C-GATCGGGGTGTTGGTGA-TCGGAGT-CACA--CAATCGTCCGAGGGAGACA-AGCATACGTTTAGT----------GG-CAGGATCAA-CCAGGTAG-CACGTCCAGGCAGAGGACAGAGCCGGTG-CCCGGGAGTGCGGTTGC-CTAGCGATCAAGA-TA-----GCATGCACTGGCACACCGGAAGGCACCAATCGCATGATTGGGGCCA-TAG-AATGATATGGAGCAGTAAAGGCGGTTGGGTGCTCAAGGCCCGCAACCCGACGTTACATGCAAGCATCATGCATC---TTATGTGCC-GACACGGTC-ATTCCGCCATACATCGCAC-CAATCGCCCGCATTC----CA--CC-TCAAAAAGA???????????????????????????????????????????? Cheilocostus_globosus_CS02351 ??????????????????????????????????????????????????????????????????????????????????????????CATTACTACGCTGG--AC-----GATTCGGGG--------------------------TGATG------AGG-CC---GAAG-GCCACTTCACCAATAATGCACACGCTGCAT--CCGCGAGCACTCATAGCACCCATGATCC---C-GCTTAGAGAGATATAGCAT-GAAGC-CACAC--AATCATCCAAGGGG-TCATGGGCACCACTGTTCAGCCACTCCCGTACCGCATTACA-C-GG-AGGGAGGG-GAGAGAGAG---------CATG-GCACCGAGTCACATTTCAC----GA--GAGACAATGTAGGCA-GCACAGGCAAAACTTGTGGCACCAATACCATCAT-TGGGCCATTAT-ATTGAGGGGTTGCAGCAACAACGGTTTGGTGCACAAGGCACGGAGCCCGCCGATAGATGCAAATATCATGCAAC---TTATGTGCC-GACACGGTC-ATTCCACTGTACATCG-CCCCA-TCGCCCACATGCATGCCCATCCATCCAGAAGACGGTGGCAAGGGGGTC-AAATGAGGCAGTCAACGGTAGAACTCC Tapeinochilos_queenslandia_Davis_B68168 ????????????????????????????????????????????????????????CGCCACCCTAGCTG---GCCA------AAGAGGCCA-CGCTATGGAGC--GCGC-----GCCGGGTAGGCAGTCATTCTAGCTGACGATTCTTGGTG---ATGAGG-CC---CGAAGGACACTTCACCAATAATGCACACGCTGCAT--CCGCGAGCACTCGTAGCACCCATGATCC---C-GCTTAGAGAGATATAGCAT-GAAGC-CACAC--AATCATCCAAGGGG-ACACGAGCACCACTGTTTGGCCACTCCCGTACCGCATTACA-C-GG-AGGGAGGGGGAGAGAGAG---------CATG-ACACCGAGTCACATTTCAC----GA--GAGACTATGTAGGCA-GCACAGGCAAAAATCGTGGCACCAATACCATCAT-TGGGCCATTAT-AATGAGAGGCTGCAGCAACAACGGTTGGGTGCACAAGGCACGGAGCCCGCCGATAGATGCAAATATCGTGCAAC---TTATGTGCC-GACACGGTC-ATTCCATTGTACATCG-CCCCA-TCGCCCACATGCATG-C---CCATCCGGAAGATGGTGGCAAG-GGGTC-AAATGAGGCAGTCAACCGTGGAACTCC ; END; BEGIN TREES; Title 'Trees from "ML tree of Costus_ETS_131001.nex"'; LINK Taxa = Taxa; TRANSLATE 1 Costus_afer_M10205, 2 Costus_albiflos_M9968, 3 Costus_allenii_M9563, 4 Costus_amazonicus_M9036, 5 Costus_arabicus_CS98193, 6 Costus_asplundii_R2976, 7 Costus_barbatus_CS01256, 8 Costus_beckii_CS99232, 9 Costus_bracteatus_M9409, 10 Costus_chartaceus_WJK903124, 11 Costus_claviger_M9306, 12 Costus_comosus_var._bakeri_19990126011, 13 Costus_curvibracteatus_M9381, 14 Costus_spicatus_WJK027143, 15 Costus_deistelii_M9298, 16 Costus_dinklagei_TvA3549, 17 Costus_aff._dubius_L920048, 18 Costus_dirzoi_19960228002, 19 Costus_dubius_M10206, 20 Costus_erythrocoryne, 21 Costus_erythrophyllus_R2847, 22 Costus_erythrothyrsus_M9317, 23 Costus_gabonensis_M10291, 24 Costus_geothyrsus_BS6782, 25 Costus_glaucus_Delft46325, 26 Costus_guanaiensis_var._guanaiensis_R2666, 27 Costus_guanaiensis_var._macrostrobilus_CS00253, 28 Costus_guanaiensis_var._tarmicus_KMN2811, 29 Costus_laevis_CS01257, 30 Costus_lasius_M9155, 31 Costus_lateriflorus_M10331, 32 Costus_letestui_CS02331, 33 Costus_leucanthus_19961105001, 34 Costus_aff._ligularis_19980923003, 35 Costus_aff._ligularis_20050100003, 36 Costus_aff._ligularis_M10226, 37 Costus_liliaceus_M9995, 38 Costus_lima_R3014, 39 Costus_lima_var._scabremarginatus_BTM750400, 40 Costus_loangensis_M10184, 41 Costus_longibracteolatus_R3003, 42 'Costus lucanusianus (yellow) Breteler5297 ', 43 Costus_lucanusianus_M10000, 44 Costus_maboumiensis_M10227, 45 Costus_aff._afer_WJK943683, 46 Costus_malortieanus_M9791, 47 Costus_montanus_R2972, 48 Costus_nitidus_M9524, 49 Costus_osae_M9501, 50 Costus_phaeotrichus_CS02323, 51 Costus_aff._phyllocephalus_BB870057, 52 Costus_aff._phyllocephalus_M10389, 53 Costus_pictus_WJK943691, 54 Costus_plicatus_WJK945376, 55 Costus_productus_R2693, 56 Costus_pulverulentus_WJK943680, 57 Costus_quasiappendiculatus_CS99233, 58 Costus_ricus_R2970, 59 Costus_scaber_R2253, 60 Costus_spectabilis_WJK976118, 61 Costus_spiralis_M9335, 62 Costus_stenophyllus_L750305, 63 Costus_aff._tappenbeckianus_Tva3675, 64 Costus_aff._tappenbeckianus_20050100001, 65 Costus_aff._tappenbeckianus_20050100002, 66 Costus_aff._tappenbeckianus_WJK943697, 67 Costus_talbotii_20030109009, 68 Costus_varzearum_WJK945379, 69 Costus_villosissimus_KMN632, 70 Costus_vinosus_M9568, 71 Costus_wilsonii_M9507, 72 Costus_woodsonii_CS01264, 73 Costus_zingiberoides_BTM860001, 74 Chamaecostus_cuspidatus_RB584184, 75 Chamaecostus_lanceolatus_pulchriflorus_RB550388, 76 Chamaecostus_subsessilis_RB584183, 77 Monocostus_uniflorus_WJK750065, 78 Dimerocostus_strobilaceus_CS01272, 79 Cheilocostus_globosus_CS02351, 80 Tapeinochilos_queenslandia_Davis_B68168; TREE ML_tree = (74:0.03858,76:0.074365,(75:0.079421,((77:0.126069,78:0.223936):0.104776,((79:0.043919,80:0.038293):0.062636,((60:0.080033,(67:0.070295,(32:0.023806,(31:0.008541,37:0.003644):0.024447):0.017434):0.025085):0.025419,((36:0.023223,(40:0.008177,(35:0.004133,34:0.0):0.003915):0.004069):0.011755,(23:0.022945,((64:0.021667,(50:0.011294,(65:0.008069,(63:0.0,66:0.0):0.006115):0.008202):0.024384):0.001944,(((43:0.0,51:0.0):0.005204,(1:0.0,((2:0.001887,19:0.004124):0.004288,(52:0.008186,(16:0.0,44:0.0):0.001625):0.001975):0.02785):0.00269):0.0,((17:0.014716,(15:0.0,(45:0.0,42:0.0):0.0):0.001923):0.005922,((25:0.012926,62:0.017976):0.00192,(53:0.0,((47:0.008848,(49:0.006173,(7:0.0,(39:0.0,38:0.002096):0.0):0.007883):0.001796):0.007934,(18:0.008233,((((26:0.0,27:0.0):0.011857,(33:0.005892,((24:0.010527,28:0.009712):0.002409,(61:0.003951,(21:0.001779,68:0.001947):0.005406):0.001774):0.0):0.001852):0.003611,((3:0.0,69:0.004613):0.009278,(9:0.00986,30:0.003905):0.0):0.00197):0.001826,(((10:0.008411,73:0.018314):0.002208,(55:0.005843,(72:0.0,(56:0.003888,((48:0.001993,(13:0.001695,58:0.008167):2.14E-4):3.4E-5,(59:0.00588,(57:0.0,(14:0.0,46:0.006264):0.001976):0.007806):0.001926):0.0):0.0):0.007856):0.0):0.002244,(22:0.005844,(((5:0.00758,4:0.005826):0.0,(6:0.009768,(54:0.003889,(11:0.009851,(20:0.005195,41:0.007957):0.002605):0.0):0.001929):0.0):0.002031,(12:0.005947,(8:0.0,(70:0.036167,(29:0.0,71:0.007778):0.013032):0.0):0.002192):0.0):0.0):0.0):0.0):0.002078):0.0):0.0):0.0):0.004213):0.008428):0.011018):0.001545):0.009712):0.02422):0.163716):0.037516):0.106876):0.036014); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 651; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 651; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 651; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1407867051108; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 6046636208017075651; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6155415804345276831; mqVersion 275; checksumv 0 3 942602170 null getNumChars 651 numChars 651 getNumTaxa 80 numTaxa 80 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 715049.0 sumSquares -7.378697629483816E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 184; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 684 1227; setLocation 1325 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #6046636208017075651 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #6046636208017075651; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 500 1160; setLocation 1325 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #6046636208017075651 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 2092.1407867039489.8234675676853455182; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 500 1160; setLocation 1325 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #6155415804345276831 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 500 1160; setLocation 1325 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;