#NEXUS [written Sun Sep 07 14:50:34 EDT 2014 by Mesquite version 2.75 (build 566) at Shayla-Salzmans-iMac-2.local/10.0.0.2] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=74; TAXLABELS Costus_afer_M10205 Costus_albiflos_M9968 Costus_amazonicus_M9036 Costus_arabicus_CS98193 Costus_asplundii_R2976 Costus_barbatus_CS01256 Costus_beckii_CS99232 Costus_bracteatus_M9409 Costus_chartaceus_WJK903124 Costus_claviger_M9306 Costus_comosus_var._bakeri_19990126011 Costus_curvibracteatus_M9381 Costus_spicatus_WJK027143 Costus_deistelii_M9298 Costus_dinklagei_TvA3549 Costus_aff._dubius_L920048 Costus_dirzoi_19960228002 Costus_dubius_M10206 Costus_erythrophyllus_R2847 Costus_erythrothyrsus_M9317 Costus_gabonensis_M10291 Costus_geothyrsus_BS6782 Costus_glaucus_Delft46325 Costus_guanaiensis_var._guanaiensis_R2666 Costus_guanaiensis_var._macrostrobilus_CS00253 Costus_guanaiensis_var._tarmicus_KMN2811 Costus_laevis_CS01257 Costus_lateriflorus_M10331 Costus_letestui_CS02331 Costus_leucanthus_19961105001 Costus_aff._ligularis_19980923003 Costus_aff._ligularis_20050100003 Costus_aff._ligularis_M10226 Costus_liliaceus_M9995 Costus_lima_R3014 Costus_lima_var._scabremarginatus_BTM750400 Costus_loangensis_M10184 Costus_longibracteolatus_R3003 'Costus lucanusianus (yellow) Breteler5297 ' Costus_lucanusianus_M10000 Costus_maboumiensis_M10227 Costus_aff._afer_WJK943683 Costus_malortieanus_M9791 Costus_nitidus_M9524 Costus_osae_M9501 Costus_phaeotrichus_CS02323 Costus_aff._phyllocephalus_BB870057 Costus_aff._phyllocephalus_M10389 Costus_pictus_WJK943691 Costus_plicatus_WJK945376 Costus_productus_R2693 Costus_pulverulentus_WJK943680 Costus_quasiappendiculatus_CS99233 Costus_ricus_R2970 Costus_scaber_R2253 Costus_spiralis_M9335 Costus_stenophyllus_L750305 Costus_aff._tappenbeckianus_Tva3675 Costus_aff._tappenbeckianus_20050100001 Costus_aff._tappenbeckianus_20050100002 Costus_aff._tappenbeckianus_WJK943697 Costus_talbotii_20030109009 Costus_varzearum_WJK945379 Costus_villosissimus_KMN632 Costus_vinosus_M9568 Costus_wilsonii_M9507 Costus_woodsonii_CS01264 Costus_zingiberoides_BTM860001 Chamaecostus_cuspidatus_RB584184 Chamaecostus_lanceolatus_pulchriflorus_RB550388 Chamaecostus_subsessilis_RB584183 Monocostus_uniflorus_WJK750065 Dimerocostus_strobilaceus_CS01272 Tapeinochilos_queenslandia_Davis_B68168 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=818; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX Costus_afer_M10205 ?????????????????????????????TG-GGCCCTTGGC-CTTTTCATG-TCAAA--TTGTACTATTTGC----------------------TTTTT-TTA-G--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCCAGA-AATTTCGATCC----CAA---------------CCTTTGGATT--TAT-----ACCGGTCCA-ATA-CTAGA-CGG---TAGACCGGTACAAATTTGG-AGCC-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------CAGTAGAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG--------TTTTTTTT-GGAACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGACATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATTGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAA-GACAC???????????????????? Costus_albiflos_M9968 ?TTGG-TAATTGTTTA-ATATATTGCATCTG-AGCATTAGGCATTTTTCATGCTCATA-GTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-CATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACCGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------CAGTATAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TGAATAACTG--------TTTTTTTT-GGAACTCGTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTAGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGCAAATGGGACAATCGACTTTTCCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA Costus_amazonicus_M9036 ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TGCGGTCTTTGG-TAAATAACTG----T---TTTTTTTT---AACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCA???????????????????????????????????????????????? Costus_arabicus_CS98193 ???????????????????????????TCTGGAGCATTAGGCA-TTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--TTTTTCCCTATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTG----------------------G-TAAATAACTG----T---TTTTTTTT---AACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGTAAGATGAAGGACACTGA????????????????? Costus_asplundii_R2976 ?TTGG-TAATTGTTTA-ATATATTGCATCTG-AGCATTAGGCA-TTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG----T---TTTTTTTT---AACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAG-ACACTGATTCTGA-GGAGGAACTA Costus_barbatus_CS01256 ?????????????????????ATTGCATCCG-AGCATTAGGCATTTTTCATGCTCAGA-TTGGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACCGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATATTATTT----------TGACTGG--ACAAAAGA------------------------CAGTAGA--TGTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG----T---TTTTTTTT-GGAACTCGTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CTTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA Costus_beckii_CS99232 ?????????????????????????CATCTG-AGCATTAGGCA-TTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGAGCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG----T---TTTTTTT--GGAACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA Costus_bracteatus_M9409 ?TTGG-TAATTGTTTA-ATATATTGCATCTG-AGCATTAGGCA-TTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG----T---TTTTTTTT---AACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA Costus_chartaceus_WJK903124 ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGAAGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--ATTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCCTTGG-TAAATAACTG----T---TTTTTTTT-GGAACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATC????????????????????????????????????????????? Costus_claviger_M9306 ???????????????????????TGCATCTG-AGCATTGGGCA-TTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGCAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG---TT---TTTTTTTT---AACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA Costus_comosus_var._bakeri_19990126011 ?TTGG-TAATTGTTTA-ATATATTGCATCTG-AGCATTAGGCA-TTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA---TTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG--------TTTTTTTT-GGAACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA Costus_curvibracteatus_M9381 ?TTGG-TAATTGTTTA-ATATATTGCATCTG-AGCATTAGGCA-TTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATGCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTACAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG--------TTTTTTTT-GGAACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA Costus_spicatus_WJK027143 ????????????????????????GCATCTG-AGCATTAGGCA-TTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCWCCGCGKTYTTTGG-WAAATAACTG---TT---TTTTTTT----AACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGA-GA??????????????????????????? Costus_deistelii_M9298 ?TTGG-TAATTGTTTA-ATATATTGCATCTG-AGCATTAGGCA-TTTTC-TGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG--------TTTTTTTT-GGAACTMTTTTCAACAGGCTGCATTACYACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACAGAAGCGGAGCTCCAGGACATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATTGACTTT-CC-GAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGACTCTGA-GGAGGAACTA Costus_dinklagei_TvA3549 ?TTGG-TAATTGTTTA-ATATATTGCATCCG-AGCATTAGGCATTTTTCATGCTCAGA-TTGGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACCGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATATTATTT----------TGACTGG--ACAAAAGA------------------------CAGTAGAT--GTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG----T---TTTTTTTT-GGAACTCGTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA Costus_aff._dubius_L920048 ????????????????????????GCATCTG-AGCATTAGGCA-TTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTT-----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG--------TTTTTTTT-GGAACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGACATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATTGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGACTCTGA-GGAGGAACTA Costus_dirzoi_19960228002 ?TTGG-TAATTGTTTA-ATATATTGCATCTG-AGCATTAGGCA-TTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTT-----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CATCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG--------TTTTTTTT-GGAACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA Costus_dubius_M10206 ?GGGG-AAAGTGT----AAATATAGCGTATG-AGCGCTTGGCGC-TTTCC-GGTTAAA-GTTGGAA-A-TTGGT---------------------TCTTC-T-AAG-CCAATTT--GAAGGAA-TTTTAAAGGG-----------------ACCAGGA-AATTTGGTTCC----CA----------------CTTTGGAATT--AAT------CCGGTTCC-ATT-CAGGA-GGG---TAG-CCGG--CCAATTTGG-GCCG-G-TTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------CAGTAGAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCAG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATGACTG--------TTTTTTTT-GGAACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGACATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTTCCCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAA-GACAC???????????????????? Costus_erythrophyllus_R2847 ????????????????????????????????????????????????????????????????????????C----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAG--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG--------TTTTTTTT-GGAACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGT?????????????????????????????????????????????????????? Costus_erythrothyrsus_M9317 ?TTGG-TAATTGTTTA-ATATATTGCAT-TG-AGCATTGGGCA-TTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--TTTTCCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTC-GCGGTCTTTGG-TAAATAACTG----T---TTTTTTTT---AACTCTATTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCG??????????????????????????????????? Costus_gabonensis_M10291 ?TTGG-TAATTGTTTA-ATATATTGCATCTG-AGCATTAGGCGTTTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGCAC-TTTTGATGGA-----------------AGCAAGA-AACTTTGCTAC----GAA---------------CTTTCCGATT--TGT-----ACCCGACCA-A------GA-C-----TAGACCGGTAGA--TTC-G-ACCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCATTCTTGAGGAAAA-------------------------CTTCCACCCAATGCTATTT----------TGACTGG--ACAAAAGA------------------------CAGTAGCA-TTTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCGA-CAGTTTAAGAT----TACAAGTAG----TCATAAGATTTTGCCCCAGAGCTCTGCGGTCTTTGC-TAAATAACTG--------TTTTTTTT---AACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTTTGGGTCAGAATCCTACGGAAGCGGAGCTCCAGGACATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGACTCCGA-GGAGGAACTA Costus_geothyrsus_BS6782 ??????????????????????????????????????AGGCA-TTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTKCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATAGT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG---TT---TTTTTTTT---AACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA Costus_glaucus_Delft46325 ??????????????????????????????????????????????????TGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG--------TTTTTTTT-GGAACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA Costus_guanaiensis_var._guanaiensis_R2666 ????????????????????????????????????????????????????????????TTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--AAAAAAGA------------------------AAGTAGAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACT-----G---TTTTTTTT-GGAACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGAAGGAGGAACTA Costus_guanaiensis_var._macrostrobilus_CS00253 ?TTGG-TAATTGTTTA-ATATATTGCATCTG-AGCATTGGGCA-TTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACT-----T---GTTTTTTT-GGAACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA Costus_guanaiensis_var._tarmicus_KMN2811 ?TTGG-TAATTGTTTA-ATATATTGCATCTG-AGCATTGGGCA-TTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG--------TTTTTTTT-GGAACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA Costus_laevis_CS01257 ?????????????????????????????????????????????????????????A-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG---TT---TTTTTTTT---AACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA Costus_lateriflorus_M10331 ?TTGG-TAATTGTTTA-ATATATTGCATCTG-AGAATTAGGCATTCTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-AATGTAT-TTTTGATGGA-----------------AGCAAGA-AATTTTGATCC----GAA---------------CTT-CAGATT--TGT-----ACCGGTCCA-A------GA-C-----TAGACCGGTACA-----------A-GTTTTTT----AAA-----------CT----TT------GGATGGAA----AACCAT-------------TATCACTCTTGAGGAAAA-------------------------CTTCCACCCAATGCTATTT----------TGACTGG--ACAAAAGA------------------------CGGTAGAA-TTTTTTCCCCATTTTTGTTTAA---TGTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGATTACATACAAGTAG----GCATAAGATTTTGCCTCAAAGCTCTGCGGTATTTGG-TAAATAACT---------TTTTTTTT-----CTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAGAATCCTACGGAAGCGGAGCTCCAGGACATGATTAATGAAGTTGATGCGGATGGC-AACGGGACAATCGACTTTCCCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGACTCCGA-GGAGGAACTA Costus_letestui_CS02331 ??????????????????????????ATCTG-AGCATTAGGCGTTTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-AATGTAT-TTTTGATGGA-----------------AGCAATA-AATTTCGATCC----GAA---------------GTTTCAGATT--TGA-----ACTGGTCCA-A-A-C-A--------CTAGACCGGTACA-----------A-GTTTTTT----AAA-----------CT----TT------GGATGGAA----AACCAT-------------TATCACTCTTGAGGAAAA-------------------------CTTCCACCCAATGCTATTT----------TGACTGG--ACAAAAGA------------------------CAGTAGAATTTTTTTCTCCATTTTTGTTTAA---TTTTCCTTTATT--TCTAATTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAGGTAG----GCATAAGATTTTGCCCCAAAGCTATGCGGTATTTGG-TAAGTAACTG--TTT---TTTTTTTT--KCTCTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAGAATCCTACGGAAGCAGAGCTCCAGGACATGATAAATGAAGTTGATGCAGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAA-GACAC???????????????????? Costus_leucanthus_19961105001 ?TTGG-TAATTGTTTA-ATATATTGCATCTG-AGCATTAGGCA-TTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG---TT---TTTTTTTT---AACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA Costus_aff._ligularis_19980923003 ??????????????????????TTGCATCTG-AGCATTAGGCGTTTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGCAC-TTTTGATGGA-----------------AGCAAGA-AATTTTGCTCC----GAA---------------CTTTCCGATT--TGT-----ACCCGTCCA-A------GA------CTAGAC----------TCG--ACCA-GTTTTTA----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCCTTCTTGGGGAAAA-------------------------CTTCCACCCAATGCTATTT----------TGACTGG--ACAAAAGA------------------------CAGTAGCA-TTTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCAAACTCATCTG-CATAATGTATTCCGA-CAGTTTAAGAT----TACAAGTAG----TCATAAGATTTTGCCCCAAAGCTCTGCCGTCTTTGG-TAAATAACTG---------TTTTTTT----ACTCTTTTCAACAGGSTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAGAATCCTACGGAAGCGGAGCTCCAGGACATGATAAATGAAGTTGAWGCSGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGAAGAAAGRAACTGACTYCCA-AGAAGAA??? Costus_aff._ligularis_20050100003 ?TTGG-TAATTGTTTA-ATATATTGCATCTG-AGCATTAGGCA-TTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG--------TTTTTTTT-GGAACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA Costus_aff._ligularis_M10226 ?TTGG-TAATYGTTTA-ATATATTGCATCTG-AGCATTAGACGTTTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGCAC-TTTTGATGGA-----------------AGCAAGA-AATTTTACTCC----GAA---------------CTTTCCGATT--TGT-----ACCCGTTCA-A------GA------CTAGACCAGTAGA--TTCG--ACCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCATTCTTGAGGAAAA-------------------------CTTCCACCCAATGCTATTT----------TGACTGG--ACAAAAGA------------------------CAGTAGCATTTTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCGA-CAGTTTAAGAT----TACAAGTAG----TCATAAGATTTTGCCCCAAAGCTCTGCTGTCTTTGG-TAAATATCTG--------TTTTTTTT---AACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTCGGTACTGTGATGCGTTCTCTGGGTCAGAATCCTACGGAAGCGGAGCTCCAGGACATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGACTCCGA-AGAGGAACTA Costus_liliaceus_M9995 ?TTGG-TAATTGTTTA-ATATATTGCATTTG-AGAATTAGGCATTCTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-AATGTAT-TTTTGATGGA-----------------AGCAAGA-AATTTTGATCC----GAA---------------CTT-CAGATT--TGT-----ACCGGTCCA-A------GA-C-----TAGACCGGTACA-----------A-GTTTTTT----AAA-----------CT----TT------GGATGGAA----AACCAT-------------TATCACTCTTGAGGAAAA-------------------------CTTCCACCCAATGCTATTT----------TGACTGG--ACAAAAGA------------------------CGGTAGAA-TTTTTTCCCCATTTTTGTTTAA---TGTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGATTACATACAAGTAG----GCATAAGATTTTGCCTCAAAGCTCTGCGGTATTTGG-TAAATAACT----------TTTTTTT-----CTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAGAATCCTACGGAAGCGGAGCTCCAGGACATGATTAATGAAGTTGATGCGGATGGC-AACGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGACTCCAA-GGAGGAACTA Costus_lima_R3014 ?TTGG-TAATTGTATA-ATATATTGCATCTG-AGCATTAGGCA-TTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAT--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG--------TTTTTTTT-GGAACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA Costus_lima_var._scabremarginatus_BTM750400 ?TTGG-TAATTGTTTA-ATATATTGCATCTG-AGCATTAGGCA-TTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--ATTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG--------TTTTTTTT-GGAACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA Costus_loangensis_M10184 ?TTGG-TAATTGTTTA-ATATATTGCATCTG-AGCATTAGACGTTTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGCAC-TTTTGATGGA-----------------AGCAAGA-AATTTTACTCC----GAA---------------CTTTCCGATT--TGT-----ACCCGTTCA-A------GA-C-----TAGACCAGTAGA--TTC-G-ACCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCATTCTTGAGGAAAA-------------------------CTTCCACCCAATGCTATTT----------TGACTGG--ACAAAAGA------------------------CAGTAGCATTTTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCGA-CAGTTTAAGAT----TACAAGTAG----TCATAAGATTTTGCCCCAAAGCTCTGCTGTCTTTGG-TAAATATCTG--------TTTTTTTT---AACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTCGGTACTGTGATGCGTTCTCTGGGTCAGAATCCTACGGAAGCGGAGCTCCAGGACATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGACTCCGA-AGAGGAACTA Costus_longibracteolatus_R3003 ?TTGG-TAATTGTTTA-ATATATTGCATCCG-AGCATTAGGCA-TTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAACTCTGCGGTCTTTGG-TAAATAACTG---TT---TTTTTTTT---AACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA 'Costus lucanusianus (yellow) Breteler5297 ' ?TTGG-TAATTGTTTA-ATATATTGCATCTG-AGCATTAGGCA-TTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTCTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACCCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------CAGTAGAA--ATTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG--------TTTTTTTT-GGAACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACAGAAGCGGAGCTCCAGGACATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATTGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGACTCTGA-GGAGGAACTA Costus_lucanusianus_M10000 ?TTGG-TAATTGTTTA-ATATATTGCATCTG-AGCATTAGGCA-TTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTCTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACCCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------CAGTAGAA--ATTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG--------TTTTTTTT-GGAACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACAGAAGCGGAGCTCCAGGACATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATTGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGACTCTGA-GGAGGAACTA Costus_maboumiensis_M10227 ?TTGG-TAATTGTTTA-ATATATTGCATCCG-AGCATTAGGCATTTTTCATGCTCAGA-TTGGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACCGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------CAGTAGAT--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG---------TTTTTTT-GGAACTCGTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTAGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA Costus_aff._afer_WJK943683 ?TGGGATAATTTTATA-ATATA--GCATATG-AGCCA-AGACC-TTTTCCAGGTTAAAATTGGTA-TTTTTGGT---------------------TTTTT-TTA-G--CAATTTA-GAGGT-T-TTTTAAAGGA-----------------AACCAAA-AATTTTGGTTC----CAA---------------CTTTTGGATT--TAA-----TCCGGTC-A-ATA--TAAG-AGG--GTAATCCGGGTAAAATTTGGGACCA---TTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCAG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG--------TTTTTTTT-GGAACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGACATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAA???????????????????????????????? Costus_malortieanus_M9791 ??????????????????????????????????????????????????GGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACA???G??G?ASC---TTTTTT----?A?-----------?TT---T?------??A????A----?A????-------------T??C?CTCTT--G?A?AA-------------------------?????CCCCC?CA?TATTT----------TT???G?--G?AAAA?A------------------------AAAAAGAAA-TTTTT??CCCTTTTT-TT???TTTTTTT??TAT?TT--T?????TCATC?G-?AT??TGT???CCAA-C?G???AAGA?----?AC?AG???----??A?AA??TTT?CCC??A?AT?TC?G?C?T?T?T??-?AAA?A??TT--------TTTTTTTT-GGAACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGA?????????????????????????????? Costus_nitidus_M9524 ?????????????????????????????????????????????????????????????TGTACTATTTGC----------------------TCCTC-TTATG--CAATTAT-GATGGAT-TTTTAATGGA-----------------AGCAAGA-AATTTCCATCC----CCA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAAA-CGG--GTAGACCGGTACAAATGCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA-----ACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCCCCCAATACTATTT----------TGACTGG--ACAAAAAA------------------------AAGTAAAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGGATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGG-CTTTGG-TAAATAACTG--------TTTTTTTT-GGAACTCTTTTCAACA-GCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA Costus_osae_M9501 ?TTGG-TAATTGTTTA-ATATATTGCATCTG-AGCATTAGGCA-TTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTT-GATCC----CCA---------------CTTTYGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--GTAGACCGGTACAAATTYGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCCCCCCATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--TTTTTCCCCCTTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG---TT---TTTTTTTT---AACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA Costus_phaeotrichus_CS02323 ????????????????????????????CTG-AGCATTAGGCATTTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCAATCT----GAA---------------CTTTCGGATT--TAT-----ACCGGTCCA-A------GA------CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTTCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------CAGTAGAATTTTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAAKGTATTCCCC-CAGCTTAARAT----TACAAGTAG----GCATAAAATTTTGCCCCAAAGCTTTGCGGTCTTTGG-TAAATAACTGTTTTT---TTTTTTTT--GAACTCTTTTCAATAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCTGAGCTCCAGGACATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGA?????????????????????????????????????????? Costus_aff._phyllocephalus_BB870057 ?TTGG-TAATTGTTTA-ATATATTGCATCTG-AGCATTAGGCATTTT-CATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCAC?CTTTAGGAAAA-------------------------CTTCCACCCAATACTATTTT----------GACTGG--ACAAA--A------------------------?A?A??A?AAWTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGATT----ACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG--------TTTTTTTT-GGAACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGA?ATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGA?????????????????????????????? Costus_aff._phyllocephalus_M10389 ?TTGG-CAAGCGT-TAGATATATTGC-TCTG-AGCATTAGGCGTTTTTCAAGCTCAGA-T-TGTACTATTCAC----------------------TCTTG-ATATG--CAATTAT-GATGCAC-TTGAGATGGA-----------------AGCAA---AATTTTG-TAT----TCA---------------CT-TC-GACT--TGT-----ACCGGTCCA-A------GA-C-----TAGACCGGTAG---TTTGG-ACCA--TTTTTT----AAA-----------CT----T-------GGAGGGAA----G-CCAT--------------A-C-TT-TTGAGGAAAA-------------------------CTTCCCCCCA-TGTT-TTT-----------G---GG--ACAAACGC------------------------CAGAAGCT--TTTCCCCCCATTTTTGTATAA---TTCTC-TATATT--TA-AACTCATCCG-CATAATGTACTCCGA-CAGTTCAAGAT-----ACAAG-AG----TCATAAG-TT----CCCAAA--TCTGCGGTCTGTG--AAAA-AACTG----------TTTTTT-GGAACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTCGGTACTGTGATGCGTTCTCTGGGTCAGAATCCTACGGAAGCGGAGCTCCAGGACATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGAT-AAGG-C?????????????????????? Costus_pictus_WJK943691 ?TTGG-TAATTGTTTA-ATATATTGCATCTG-AGCATTAGGCA-TTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAAA-CGG--CTAGACCGGAACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CATCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG--------TTTTTTTT-GGAACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA Costus_plicatus_WJK945376 ?TTGG-TAATTGTTTA-ATATATTGCATCTG-AGCATTAGGCA-TTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CGA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG----T---TTTTTTTT---AACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA Costus_productus_R2693 ?TTGG-TAATTGTTTA-ATATATTGCATCTG-AGCATTAGGCA-TTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------GTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG--------TTTTTTTT-GGAACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA Costus_pulverulentus_WJK943680 ?TTGG-TAATTGTTTA-ATATATTGCATCTG-AGCATTAGGCA-TTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATGCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG--------TTTTTTTT-GGAACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA Costus_quasiappendiculatus_CS99233 ?TTGG-TAATTGTTTA-ATATATTGCATCTG-AGCATTGGGCA-TTTTCATGCTCAGA-TTTGAACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG---------TTTTTTT-GGAACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA Costus_ricus_R2970 ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GATT--TAT-----ACTGGTCCA-ATA-CCTGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG--------TTTTTTTT-GGAACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA Costus_scaber_R2253 ?TTGG-TAATTGTTTA-ATATATTGCATCTG-AGCATTAGGCA-TTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTTGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG--------TTTTTTTT-GGAACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA Costus_spiralis_M9335 ?TTGG-TAATTGTTTA-ATATATTGCATCTG-AGCATTAGGCA-TTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--TTTTTCCCTATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG---TT---TTTTTTTT---AACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA Costus_stenophyllus_L750305 ?TTGG-TAATTGTTTA-ATATATTGCATCTG-AGCATTAGGCA-TTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GATCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCMCCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--ATTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTACCCCAAAGCTYTGCGGTCTTTGG-TAAATAACTG--------TTTTTTTT-GGAACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGA?????????????????????????????? Costus_aff._tappenbeckianus_Tva3675 ?TTGG-TAATTGTTTA-ATATATTGCATCTG-AGCATTAGGCATTTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCAATCT----GAA---------------CTTTCGGATT--TAT-----ACCGGTCCA-A------GA------CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTTCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------CAGTAGAA-TTTTTTCCCCATTTTTGTTTAA---TTTTCCTATAAT--TCTAACTCATCTG-CATAATGTATTCCCA-CAGCTTAAGAT----TACAAGTAG----GCAAAAGATTTTGCTCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG---TT---TTTTTTTT-GGAACTCTTTTCAATAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGAAAGATGAAGGACACTGACTCCGA-GGAGGAACTA Costus_aff._tappenbeckianus_20050100001 ?TTGG-TAATTGTTTA-ATATATTGCATCTG-AGCATTAGGCATTTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCAATCC----GAA---------------CTTTCAGATT--TAT-----ACCGGTCCA-A------GA-C-----TAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------CAGTAGAA-TTTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAACGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG--------TTTTTTTTGGGAACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAGAATCCTACGGAAGCGGAGCTCCAGGACATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGACTCCGA-GGAGGAACTA Costus_aff._tappenbeckianus_20050100002 ?????????????????????????????TG-AGCATTAGGCATTTTTCATGCTCAGA-TTTGT-CTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCAATCT----GAA---------------CTTTCGGATT--TAT-----ACCGGTCCA-A------GA------CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------GTTTCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------CAGTAGAA-TTTTTTCCCCATTTTTGTTTAA---TTTTCCTATATG--TCTAACTCATCTG-CATAATGTATTCCCA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTTTGCGGTCTTTGG-TAAATAACTG--TTT---TTTTTTTT--GAACTCTTTTCAATAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCTGAGCTCCAGGACATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATC????????????????????????????????????????????? Costus_aff._tappenbeckianus_WJK943697 ?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????AT-TTTTAA?GGA-----------------AGCAA?A-AATTTCAAT?T----GAA---------------CTTT?GGATT--TA?-----?CCGGTCCA-A------G?-?-----TAGACCGGTACAAATT?GG-AGCA-GTTTTTT----AAA-----------??----TT------GGG?GGAA----GACCAT-------------TATC?CT?TTTAGGAAAA-------------------------?TTCC?CCCAATA?T?TTT----------TG???GG--ACAAAAGA------------------------CAGTAGATTTTTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--T?TAA?TCAT?TG-CA?AATGTATTCC??-CAG?TTAAGAT----TACAAGTAG----GCATAAGATTTTTCCCCAAAGCTTTGCGGT?TTTGG-TAAATAACTG-TTTT---TTTTTTTT--GAACTCTTTTCAATAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCTGAGCTCCAGGACATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGA?GGCTCGGAAGATGA?G????????????????????????? Costus_talbotii_20030109009 ?TTGG-TAATTGTTTA-ATATATTGCATCTG-AGCATTAGGCGTTTTTAATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-AATGTAT-TTTTGATGGA-----------------AGCAAGA-AATTTCGATCC----GAA---------------CTTCCAGATT--TGT-----AGCGGTCCA-A------GA-C-----TAGACCGGTACA-----------A-GTTTTTT----AAA-----------CT----TT------GGATGGAA----AACCAT-------------TATCACTCTTGAGGAAAA-------------------------CTTCCACCCAATGCTATTT----------TGACTGG--ACAAAAGA------------------------CGGTAGAA-TTTTTTCCCCATTTTTGTTTAA---TTTTTCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTATTTGG-TAAATAACTG--------TTTTTTTT-----CTCTTTTCAACAGGCTGTATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAGAATCCTACGGAAGCGGAGCTCCAGGACATGATAAATGAAGTTGATGCGGATGGC-AACGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGAAAGATGAAGGACACTGACTCCGA-GGAGGAACTA Costus_varzearum_WJK945379 ????????????????????????GCATCTG-AGCATTAGGCA-TTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGCAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG----T---TTTTTTTT---AACTCGTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGA?????????????????????????????? Costus_villosissimus_KMN632 ?TTGG-TAATTGTTTA-ATATATTGCATCTG-AGCATTAGGC-----------------------------------------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG---TT---TTTTTTTT---AACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA Costus_vinosus_M9568 ?TTGG-TAATTGTTTA-ATATATTGCATCTG-AGCATTAGGCA-TTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG----T---TTTTTTTT---AACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA Costus_wilsonii_M9507 ????????????????????????????CTG-AGCATTGGGCA-TTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCTCAAAGCTCTGCGGTCTTTGG-TAAATAACTG--------TTTTTTTT-GGAACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA Costus_woodsonii_CS01264 ?TTGG-TAATTGTTTA-ATATATTGCATCTG-AGCATTAGGCA-TTTTCATGCTCAGA-TTTGTACTATTTGC----------------------TCTTC-TTATG--CAATTAT-GATGTAT-TTTTAATGGA-----------------AGCAAGA-AATTTCGATCC----CAA---------------CTTTCGGATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATCTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG--------TTTTTTTT-GGAACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA Costus_zingiberoides_BTM860001 ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????ATT--TAT-----ACTGGTCCA-ATA-CTAGA-CGG--CTAGACCGGTACAAATTCGG-AGCA-GTTTTTT----AAA-----------CT----TT------GGATGGAA----GACCAT-------------TATCACTCTTTAGGAAAA-------------------------CTTCCACCCAATACTATTT----------TGACTGG--ACAAAAGA------------------------AAGTAGAA--TTTTTCCCCATTTTTGTTTAA---TTTTCCTATATT--TCTAACTCATYTG-CATAATGTATTCCAA-CAGCTTAAGAT----TACAAGTAG----GCATAAGATTTTGCCCCAAAGCTCTGCGGTCTTTGG-TAAATAACTG--------TTTTTTTT-GGAACTCTTTTCAACAGGCTGCATTACTACCAAGGAGCTTGGTACTGTGATGCGTTCTCTGGGTCAAAATCCTACGGAAGCGGAGCTCCAGGATATGATAAATGAAGTTGATGCGGATGGC-AATGGGACAATCGACTTT-CCTGAGTTTCTCAATCTGATGGCTCGGAAGATGAAGGACACTGATTCTGA-GGAGGAACTA Chamaecostus_cuspidatus_RB584184 ?TTGG-----TG---A-A-----TG------------------------------------------ATAT--ATTATAAATCCAAAAG-TTAAAT-TTG-TCAAT--TAATGAA-GATGTAT--CATG-TGG-CAAACAGTATCTTACCAACCATAA-AA--T-GA---AAAGCAACAGGAAAGTATAAGTCTTTCT-ATTT-TTA-----CCTTTCTCA-ATA-GAACA--GGTTCT-TTCTTAAAAAAATT-GCCTGCAACTTTC-T----AAT-TATA----GTCC----TTAGTAATGTATG---------TCATACTTCTTATAAGCTATCAAACATT-GTAAAAG------------------------GTTG-----AA-GCT----------------ACAG----CAAAAGGCTCCCAGTACTCCAGTAGTATTAACA-TA-AA--TGGCTGGTTATGTAAGTG-AC---ATTTGATATTTT--GCT---TGATAAG-TATGTAGAGTCACAA-TGATTTAAGAT----TAAAAG-AT----GGACAAAAACTTGGTGCAAATTT-TAC----TATGC-----TTACT---------TATTCTTT-GG------TATCAACAGGTTGTATCACCACCAAAGAACTTGGGACTGTCATGCGTTCTCTGGGTCAGAACCCAACAGAAGCAGAATTACAGGACATGATAAATGAAGTTGATGCAGATGGT-AATGGCACAATTGACTTC-CCTGAGTTTCTTAATCTGATGGCTCGGAAAATGAAGGACACTGACTCTGA-GGAAGAGTTG Chamaecostus_lanceolatus_pulchriflorus_RB550388 ?TTGG-----TG---A-A-----TG------------------------------------------ATAT--ATTATAAATCCAAAAG-TTAAAT-TTC-TCAAT--TAATGAA-GATGTAT--CATG-TGG-CAAACAGTATCTTACCAACCATAA-AA--T-GA---AAAGCAACAGGAAAGTATTAGTCTTTCT-ATTT-TTA-----CCTTTCTCA-AGA-GAACA--GGTTCT-TTCTTAAAAAAATT-GCCTGCAACTTTC-T----AAT-TATAT----TCC----TTAGTAATGTATG---------CCATACTTCTTATAAGCTATCAAACGTT-GTAAAAG------------------------GTTG-----AA-GCT----------------ACAG----CAAAAGGCT-------CT------GTATTAACA-TA-AA--TGTTTGTTTATGTAGGTG-AC---AGTTGATATTTT--GCT---TGATAAG-TATGTACAGTCACAA-TGATTTAAGATTAT-TAAAAG-AT----GGACAAAAACTTGGTTCAAATTT-TAC----TATGC------TACT---------TATTCTTT-GG------TATCAACAGGTTGTATCACCACCAAAGAACTTGGGACTGTCATGCGTTCTCTAGGTCAGAACCCAACAGAAGCAGAATTACAGGACATGATAAACGAAGTTGATGCAGATGGT-AATGGCACAATTGACTTC-CCTGAGTTTCTTAATCTGATGGCTCGTAAAATGAAGGACACTGACTCTGA-GGAAGAATTG Chamaecostus_subsessilis_RB584183 ?TTTG-----TG---A-A-----TG------------------------------------------ATAT--ATTATAAATCCAAAAG-TTAAAT-TTG-TCAAT--TAATGAA-GATGCAT--CATG-TGG-CAAACAGTATCTTACCAACCATAA-AG--T-GA---AAAGCAACAGGAAAGTATAGGTCTTTCT-ATTT-TTA-----CCTTTCTCA-ATA-GAACA--GGTTCT-TTCTTAAAAAAATT-GCCTGCAAC-TTC-T----AAT-TATAT----TCC----TTTGTAATGTATG---------TCATACTTCTTATAAGCTATCAAACATT-GTAAAAG------------------------GTTG-----AA-GCT----------------ACAG----CAAAAGGCTCCCAGTACT-CAGTAGTATTAACA-TA-AA--TGGCTGGTTATGTAAGTG-AC---ATTTGATATTTT--GCT---TGATAAG-TATGTAGAGTCACAA-TGATTTAAGAT----TAAAAG-AT----GGACAAAAACTTGGTGCAAATTT-TAC----TATGC-----TTACT---------TATTCTTT-GG------TATCAACAGGTTGTATCACCACCAAAGAACTTGGAACTGTCATGCGTTCTCTGGGTCAGAACCCAACAGAAGCAGAATTACAGGACATGATAAACGAAGTTGATGCAGATGGT-AATGGCACAATTGACTTC-CCTGAGTTTCTTAATCTAATGGCTCGTAAAATGAAGGACACTGACTCTGA-GGAAGAGTTG Monocostus_uniflorus_WJK750065 TTGGG-----------------------------------------------CTCA-----TG----ATGT-----------TCAA-TG-ATGGA----G-TGGA-CCTAATTGA----------------------TC?TTCTTTTTCTA-CCATGTTAGTTT-GA--------------------------TCTCGG-T---TTT-----TC-ATCACATA?ATG--G-TTGGTT?T-TTCT?GTAGAGATT--GAATTA---TTCTT----AAAA----------C---------------AT------------ATGCT----------------GCATTGATGAA------------------------------------------TTTTCA----TTGTG-CT------AA----------------------------CT-AAGAA-AA-TTTTC-AATG-AA---TA----TGTAGATCC-TCAAGCT---TGA-AAACT-C-TTCAGCCACAATTTATTTACCAGT---TTCAAGTAGCTATGGAGAAAATTTCA-TGTATTGCT--AC---------A-AATTAAGGG--TTTAATTTTCCTAT-GGAA----TTCCTACAGGCTGCATCACGACCAAGGAGCTTGGAACTGTGATGCGTTCTTTGGGTCAGAACCCTACTGAAGCAGAACTGCAGGATATGATAAATGAGGTTGATGCTGATGGA-AATGGAACAATCGACTTC-CCTGAATTTCTTAACTTAATGGCTCGCAAGATGAAGGATACTGATTCTGA-GGAGGAGCTA Dimerocostus_strobilaceus_CS01272 ??????????????????????????????????????????TCTTTT--TGTTTGAACTTTGAATT-------------------GAGTTTGGG-CT-CATGATGTTCAATGATGGA-GTGGACCCTAATTGATCG---TTCTTTTTCT-ACCATGTTAGTTT-GATCC-------------------------TCGG-TTT-T-------TC-ATCACA--TA-GATGATTGGTTAT-TTCTTGTAGAGATT--GAATTA---TTCTT----AAAACATAT---G-CT-GCATT------GGATG-AATTTT--CCTTG-T--------GCTAAC------TAAGAAAA-----------------------------------------TTTTCAA------TGACT-------------------------------------A-T-GAA---GA-TCCTCAAGCTTG--------------------AA---AACTCTTCAGCCACAATTTATTT-AC-CAGTTT-----------CAAGTAGCTATGGAGAAAATTTCA-TGTATTGCT--AC---------A-AATTAAGGG--TTTAA-TTTTCCTATGGAA----TTCCTACAGGCTGCATCACGACCAAGGAGCTTGGAACTGTGATGCGTTCTTTGGGTCAGAACCCTACTGAAGCAGAACTGCAGGATATGATAAATGAGGTTGATGCTGATGGA-AATGGAACAATCGACTTC-CCTGAATTTCTTAACTTAATGGCTCGCAAGATGAAGGATACTGATTCTGA-GGAGGAGCTA Tapeinochilos_queenslandia_Davis_B68168 ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GAGA-TTT--ATT-----------------------C-TTAGTATTAATATGAATGACTGGT-----TATGTA----GG--CT---CCCC------TTT-GAT---ATTTTATTTGATAAG-TATGTAGAGTCA--CA----------ATGG----------TTG-----------------AAGATT---AAAAGATGGGCAAAAACTTGGTCCAAATTGTT----CC-ATATTATTT---ATTCTTT----TGGTATCAACAGGCT---------------GTAT---CACTACAA-AAGACTGGTTATGTAGGCTCCC---GTTTGATATTTT-----ATTTGATAAG-TATGTAGAGTCACAA-TGGTT---GAT----TAAAAG-GT----GGACAAAAATTTGGTCCAAATT------G--TT-CCATA--TTA------TT---TATTCTTTTGG------TGTCAACAGGCTGTATCACCACAAAAGAACTTGGGACTGTCATGCGTTCTCTGGGGCAGAACCCAACAGAAGCAGAATTACAGGACATGATAAACGAAGTTGACGCAGATGGT-AATGGCACAATTGACTTT-CCTGAGTTTCTTAATCTGATGGCTCGCAAAATGAAGGACACTGACTT?????????????? ; END; BEGIN TREES; Title 'Trees from "Costus_CaM_131001_MB100M_1.nex"'; LINK Taxa = Taxa; TRANSLATE 1 Costus_afer_M10205, 2 Costus_albiflos_M9968, 3 Costus_amazonicus_M9036, 4 Costus_arabicus_CS98193, 5 Costus_asplundii_R2976, 6 Costus_barbatus_CS01256, 7 Costus_beckii_CS99232, 8 Costus_bracteatus_M9409, 9 Costus_chartaceus_WJK903124, 10 Costus_claviger_M9306, 11 Costus_comosus_var._bakeri_19990126011, 12 Costus_curvibracteatus_M9381, 13 Costus_spicatus_WJK027143, 14 Costus_deistelii_M9298, 15 Costus_dinklagei_TvA3549, 16 Costus_aff._dubius_L920048, 17 Costus_dirzoi_19960228002, 18 Costus_dubius_M10206, 19 Costus_erythrophyllus_R2847, 20 Costus_erythrothyrsus_M9317, 21 Costus_gabonensis_M10291, 22 Costus_geothyrsus_BS6782, 23 Costus_glaucus_Delft46325, 24 Costus_guanaiensis_var._guanaiensis_R2666, 25 Costus_guanaiensis_var._macrostrobilus_CS00253, 26 Costus_guanaiensis_var._tarmicus_KMN2811, 27 Costus_laevis_CS01257, 28 Costus_lateriflorus_M10331, 29 Costus_letestui_CS02331, 30 Costus_leucanthus_19961105001, 31 Costus_aff._ligularis_19980923003, 32 Costus_aff._ligularis_20050100003, 33 Costus_aff._ligularis_M10226, 34 Costus_liliaceus_M9995, 35 Costus_lima_R3014, 36 Costus_lima_var._scabremarginatus_BTM750400, 37 Costus_loangensis_M10184, 38 Costus_longibracteolatus_R3003, 39 'Costus lucanusianus (yellow) Breteler5297 ', 40 Costus_lucanusianus_M10000, 41 Costus_maboumiensis_M10227, 42 Costus_aff._afer_WJK943683, 43 Costus_malortieanus_M9791, 44 Costus_nitidus_M9524, 45 Costus_osae_M9501, 46 Costus_phaeotrichus_CS02323, 47 Costus_aff._phyllocephalus_BB870057, 48 Costus_aff._phyllocephalus_M10389, 49 Costus_pictus_WJK943691, 50 Costus_plicatus_WJK945376, 51 Costus_productus_R2693, 52 Costus_pulverulentus_WJK943680, 53 Costus_quasiappendiculatus_CS99233, 54 Costus_ricus_R2970, 55 Costus_scaber_R2253, 56 Costus_spiralis_M9335, 57 Costus_stenophyllus_L750305, 58 Costus_aff._tappenbeckianus_Tva3675, 59 Costus_aff._tappenbeckianus_20050100001, 60 Costus_aff._tappenbeckianus_20050100002, 61 Costus_aff._tappenbeckianus_WJK943697, 62 Costus_talbotii_20030109009, 63 Costus_varzearum_WJK945379, 64 Costus_villosissimus_KMN632, 65 Costus_vinosus_M9568, 66 Costus_wilsonii_M9507, 67 Costus_woodsonii_CS01264, 68 Costus_zingiberoides_BTM860001, 69 Chamaecostus_cuspidatus_RB584184, 70 Chamaecostus_lanceolatus_pulchriflorus_RB550388, 71 Chamaecostus_subsessilis_RB584183, 72 Monocostus_uniflorus_WJK750065, 73 Dimerocostus_strobilaceus_CS01272, 74 Tapeinochilos_queenslandia_Davis_B68168; TREE con_50_majrule = (1:0.109101359090687,((2:0.09780058295288752,(3:0.03058847000448193,(4:0.03828664619332533,56:0.01714268558451678)0.819:0.0326763439377166,5:0.01314035497509216,7:0.03267608667886954,8:0.01404881524139199,(9:0.06909753641521912,36:0.01386371515911084,57:0.03396316253777369)0.792:0.0322164163637899,(10:0.01380211199168844,63:0.01540014279772632)0.945:0.033272975201104,11:0.0137955546050239,12:0.03255949340890747,13:0.01421629318314381,((14:0.01365230481470882,(39:0.01293090082506823,40:0.01422203565215955,((((69:0.05280783523794109,71:0.07372461502704512)0.912:0.06913435101104777,70:0.1901610392916285)1.000:0.6421023041939008,74:0.512959599329)1.000:1.317733202154744,(72:0.7640418793557289,73:0.4524196438285673)1.000:1.248697362460342)1.000:1.045893979508452)0.992:0.07131119982250149)0.985:0.03487845646170871,16:0.01376712990340159)0.993:0.05321909568832545,(17:0.01483228892927536,49:0.0529272158273534)0.891:0.0321998233605305,19:0.03653549960379147,20:0.05652259915446382,22:0.03468265399644962,23:0.0131442819569619,24:0.01468677180242779,25:0.01316111102405394,26:0.01313046782853534,27:0.01399720679240536,30:0.01388629277031345,32:0.01353637796811656,35:0.0312703987354617,38:0.0335513988192996,(43:0.2836309202245298,44:0.1395549106256769,45:0.04490851462092985)0.655:0.05806258015050537,47:0.03286885669902063,50:0.03044490285022929,51:0.03171927781830455,52:0.01371276820534527,53:0.01391557625269729,54:0.06141114049924212,55:0.03241445833936252,64:0.01419362165278571,65:0.01438149003560976,66:0.01407383116391325,67:0.01273365436131369,68:0.01538916603952196)0.885:0.06711646072983807,((6:0.03382467936454487,15:0.01382962533271175)0.984:0.05530867724994718,41:0.03224380037360781)0.952:0.05068263749129176)0.969:0.06019110630532272,(((21:0.1050553904153661,(31:0.1582641034140624,(33:0.01355310178423502,37:0.0130893948857943)1.000:0.1214144601568947)0.835:0.04866851714155165,48:0.6050617491632824)1.000:0.1925910562327052,((28:0.01418520881428541,34:0.05413751505996336)1.000:0.1133508115786826,62:0.08591928802946443)0.993:0.06150630173817363,29:0.2446082771443398)1.000:0.1198522222300526,59:0.03457055235952194)0.999:0.05324242957598321,((46:0.05485561965627192,60:0.05386000219403186,61:0.1081398999130565)0.989:0.05718849428957987,58:0.1141075153837442)0.978:0.06843039823829791)0.999:0.1626399760587852,(18:0.5623121863694943,42:0.3683086652587367)0.999:0.2481360221197835); END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 818; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 818; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 818; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1410115834568; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 2799422646219668665; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 4888680841710719037; mqVersion 275; checksumv 0 3 1263237351 null getNumChars 818 numChars 818 getNumTaxa 74 numTaxa 74 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 1064735.0 sumSquares -8.301034833169297E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 86; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1412 1208; setLocation 1012 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #2799422646219668665 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #2799422646219668665; getWindow; tell It; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1326 1141; setLocation 1012 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #2799422646219668665 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; toggleUseWeights off; endTell; setAssignedID 1459.1410115230392.2122262066831749517; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1326 1141; setLocation 1012 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.arrow; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareTree.SquareTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle off; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; endTell; setEdgeWidth 6; orientUp; setCornerMode Right_Angle 50; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 1; setTree '(((72:0.7640418793557289,73:0.4524196438285673)1.000:1.248697362460342,(74:0.512959599329,(70:0.1901610392916285,(69:0.05280783523794109,71:0.07372461502704512)0.912:0.06913435101104777)1.000:0.6421023041939008)1.000:1.317733202154744)1.000:0.522946989754226,(39:0.01293090082506823,40:0.01422203565215955,(14:0.01365230481470882,(16:0.01376712990340159,(3:0.03058847000448193,5:0.01314035497509216,7:0.03267608667886954,8:0.01404881524139199,11:0.0137955546050239,12:0.03255949340890747,13:0.01421629318314381,19:0.03653549960379147,20:0.05652259915446382,22:0.03468265399644962,23:0.0131442819569619,24:0.01468677180242779,25:0.01316111102405394,26:0.01313046782853534,27:0.01399720679240536,30:0.01388629277031345,32:0.01353637796811656,35:0.0312703987354617,38:0.0335513988192996,47:0.03286885669902063,50:0.03044490285022929,51:0.03171927781830455,52:0.01371276820534527,53:0.01391557625269729,54:0.06141114049924212,55:0.03241445833936252,64:0.01419362165278571,65:0.01438149003560976,66:0.01407383116391325,67:0.01273365436131369,68:0.01538916603952196,(4:0.03828664619332533,56:0.01714268558451678)0.819:0.0326763439377166,(10:0.01380211199168844,63:0.01540014279772632)0.945:0.033272975201104,(17:0.01483228892927536,49:0.0529272158273534)0.891:0.0321998233605305,(9:0.06909753641521912,36:0.01386371515911084,57:0.03396316253777369)0.792:0.0322164163637899,(43:0.2836309202245298,44:0.1395549106256769,45:0.04490851462092985)0.655:0.05806258015050537,(2:0.09780058295288752,(41:0.03224380037360781,(6:0.03382467936454487,15:0.01382962533271175)0.984:0.05530867724994718)0.952:0.05068263749129176,((1:0.109101359090687,(18:0.5623121863694943,42:0.3683086652587367)0.999:0.2481360221197835):0.1626399760587852,(58:0.1141075153837442,(46:0.05485561965627192,60:0.05386000219403186,61:0.1081398999130565)0.989:0.05718849428957987)0.978:0.06843039823829791,(59:0.03457055235952194,(29:0.2446082771443398,(62:0.08591928802946443,(28:0.01418520881428541,34:0.05413751505996336)1.000:0.1133508115786826)0.993:0.06150630173817363,(21:0.1050553904153661,48:0.6050617491632824,(31:0.1582641034140624,(33:0.01355310178423502,37:0.0130893948857943)1.000:0.1214144601568947)0.835:0.04866851714155165)1.000:0.1925910562327052)1.000:0.1198522222300526)0.999:0.05324242957598321)0.999:0.06019110630532272)0.969:0.06711646072983807)0.885:0.05321909568832545)0.993:0.03487845646170871)0.985:0.07131119982250149)0.992:0.522946989754226);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred on; toggleHorizontal on; toggleWhiteEdges on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #4888680841710719037 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1326 1141; setLocation 1012 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;