NEXUS [File created by TreeBASE: 7/26/07 20:57:49] [Matrix accession#: M630] BEGIN TAXA; TITLE M630; DIMENSIONS NTAX=15; TAXLABELS 'Ustilago bullata #B-249 MAT-2' 'Ustilago tritici #T-2' 'Ustilago avenae #A-60 MAT-1' 'Ustilago kolleri #K-45 MAT-1' 'Ustilago hordei 316 #14.1 MAT-2' 'Ustilago hordei 362 #4854 MAT-2' 'Ustilago nigra #83-138 MAT-2' 'Ustilago aegilopsidis #4327 MAT-1' 'Ustilago nuda #96-253' 'Ustilago maydis #521 a1b1' Sporisorium_reilianum 'Ustilago scitaminea #5 MAT-2' 'Tilletia walkeri #M96442' 'Tilletia indica #11' 'Puccinia caricina #U88234' ; END; BEGIN CHARACTERS; TITLE M630; DIMENSIONS NCHAR=805; FORMAT DATATYPE = DNA MISSING = ? GAP = - ; MATRIX 'Ustilago bullata #B-249 MAT-2' CATTTCGA-TGAAAACCC--TTTTTTCAGAGGTGTGGCTCGCACCTGTCCAACTAAACTTGAGCTACCTTTTTT---CAACAC---------GGTTGCATC--GG-TCGGCCTGTC--AAACAGT-GCGACGCAA----GGAGAAAATCCTTGCGTCTGCTGGGCGACGGACGGACAATTTTATTTAACACTTTTGGATGATCTAGGA--TTTGAAGGAGAAAAAGTCATTTTTACGA--ATGAAATCGACTGGTAATGCGGTCGTCT--AATTTTAAAA----ACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGA----AGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCGGCAGATCTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACGACAGC--TTTTTTCTTTTGGAAAAA-------G-GTTGACGGATCGG-TATTGAGGGGTTTTGCCATTTACCGTGGCTCCCTCGAAATAGATTAGCGCATCCATTTTAT--AGGC--AAGACGGACGAAAGCTCGA--TTTT------------TGCTCTCTCTTCCCTGCCGGGTTTTGATACTATCAGGACTTCGGAGAGGTTGAG-ATGGGTA-GGAGCTGG-ACGC---AACGG-CT-TGCTGTTT-GGAGTGCTTCTGAAACCCGCCCATGCCGAG--------------TTTTTTTTAGGAAGCTAGGAAGGGATTTATAAT--AATTCA--TCGGCC 'Ustilago tritici #T-2' CATTTCGA-TGAAAAACC--TTTTTTCAGAGGTGTGGCTCGCACCTGTCCAACTAAACTTGAGCTACCTTTTTT---CAACAC---------GGTTGCATC--GG-TCGGCCTGTC--AAACAGT-GCGACGCAA----GGAGAAAATCCTCGCGTCTGCTGGGCGACGGACGGACAATTTTATTTAACACTTTTGGATGATCTAGGA--TTTGAAGGAGAAAAAGTCATTTTTACGA--ATGAAATCGACTGGTAATGCGGTCGTCT--AATTTTAAAA----ACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGA----AGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCGGCAGATCTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACGACAGC--TTTTTTCTTTTGG-AAAA-------G-GTTGACGGATCGG-TATTGAGGGTTTTTGCCATTTACCGTGGCTCCCTCGAAATAGATTAGCGCATCCATTTTAT--AGGC--AAGACGGACGAAAGCTCGA--TTTT------------TGCTCTCTCTTCCCTGCCGGGTTTTGATACTATCAGGACTTCGGAGAGGTTGAG-ATGGGTA-GGAGCTGG-ACGC---AACGG-CT-TGCTGTTT-GGAGTGCTTCTGAAACCCGCCCATGCCGAG----------------TTTTTTAGGAAGCTAGGAAGGGATTTATAAT--AATTCA--TCGGCC 'Ustilago avenae #A-60 MAT-1' CATTTCGA-TGAAAAACC--TTTTTTCAGAGGTGTGGCTCGCACCTGTCCAACTAAACTTGAGCTACC-TTTTT---CAACAC---------GGTTGCATC--GG-TCGGCCTGTC--AAACAGT-GCGACGCAA----GGAGAAAATCCTCGCGTCTGCTGGGCGACGGACAGACAATTTTATTGAACACTTTTTGATGATCTAGGA--TTTGAAGGAGAAAAAGTCATTTTTACAA--ATGAAATCGACTGGTAATGCGGTCGTCT--AATTTTAAAA----ACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGA----AGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCGGCAGATCTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACGACAGC--TTTTTTCTTTTGG-AAAA-------G-GTTGACGGATCGG-TATTGAGGGTTTTTGCCATTTACCGTGGCTCCCTTGAAATAGATTAGCGCATCCATTTTAT--AGGC--AAGACGGACGAAAGCTCGA--TTTT------------TGCTCTCTCTTCCCTGCCGGGTTTTGATACTATCAGGACTTCGGAGAGGTTGAG-ATGGGTA-GGAGCTCG-ACGC---AACGG-CT-TGCTGTTT-GGAGTGCTTCTGAAACCCGCCCATGCCGAG-----------TTTTTTTTTTTAGAAAGCTAGGAAGGGATTTATAAT--AATTCA--TCGGCC 'Ustilago kolleri #K-45 MAT-1' CATTTCGA-TGAAAAACC--TTTTTTCAGAGGTGTGGCTCGCACCTGTCCAACTAAACTTGAGCTACC-TTTTT---CAACAC---------GGTTGCATC--GG-TCGGCCTGTC--AAACAGT-GCGACGCAA----GGAGAAAATCCTCGCGTCTGCTGGGCGACGGACAGACAATTTTATTGAACACTTTTTGATGATCTAGGA--TTTGAAGGAGAAAAGGTCATTTTTACAA--ATGAAATCGACTGGTAATGCGGTCGTCT--AATTTTAAAA----ACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGA----AGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCGGCAGATCTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACGACAGC--TTTTTTCTTTTGG-AAAA-------G-GTTGACGGATCGG-TATTGAGGGTTTTTGCCATTTACCGTGGCTCCCTTGAAATAGATTAGCGCATCCATTTTAT--AGGC--AAGACGGACGAAAGCTCGA--TTTT------------TGCTCTCTCTTCCCTGCCGGGTTTTGATACTATCAGGACTTCGGAGAGGTTGAG-ATGGGTA-GGAGCTCG-ACGC---AACGG-CT-TGCTGTTT-GGAGTGCTTCTGAAACCCGCCCATGCCGAG-----------TTTTTTTTTTTAGAAAGCTAGGAAGGGATTTATAAT--AATTCA--TCGGCC 'Ustilago hordei 316 #14.1 MAT-2' CATTTCGA-TGAAAAACC--TTTTTTCAGAGGTGTGGCTCGCACCTGTCCAACTAAACTTGAGCTACC-TTTTT---CAACAC---------GGTTGCATC--GG-TCGGCCTGTC--AAACAGT-GCGACGCAA----GGAGAAAATCCTCGCGTCTGCTGGGCGACGGACAGACAATTTTATTGAACACTTTTTGATGATCTAGGA--TTTGAAGGAGAAAAAGTCATTTTTACGA--ATGAAATCGACTGGTAATGCGGTCGTCT--AATTTTAAAA----ACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGA----AGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCGGCAGATCTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACGACAGC--TTTTTTCTTTTGG-AAAA-------G-GTTGACGGATCGG-TATTGAGGGTTTTTGCCATTTACCGTGGCTCCCTTGAAATAGATTAGCGCATCCATTTTAT--AGGC--AAGACGGACGAAAGCTCGA--TTTT------------TGCTCTCTCTTCCCTGCCGGGTTTTGATACTATCAGGACTTCGGAGAGGTTGAG-ATGGGTA-GGAGCTCG-ACGC---AACGG-CT-TGCTGTTT-GGAGTGCTTCTGAAACCCGCCCATGCCGAG------TTTATTTTATT-TTATAGAAAGCTAGGAAGGGATTTATAAT--AATTCA--TCGGCC 'Ustilago hordei 362 #4854 MAT-2' CATTTCGA-TGAAAAACC--TTTTTTCAGAGGTGTGGCTCGCACCTGTCCAACTAAACTTGAGCTACC-TTTTT---CAACAC---------GGTTGCATC--GG-TCGGCCTGTC--AAACAGT-GCGACGCAA----GGAGAAAATCCTCGCGTCTGCTGGGCGACGGACAGACAATTTTATTGAACACTTTTTGATGATCTAGGA--TTTGAAGGAGAAAAAGTCATTTTTACGA--ATGAAATCGACTGGTAATGCGGTCGTCT--AATTTTAAAA----ACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGA----AGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCGGCAGATCTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACGACAGC--TTTTTTCTTTTGG-AAAA-------G-GTTGACGGATCGG-TATTGAGGGTTTTTGCCATTTACCGTGGCTCCCTTGAAATAGATTAGCGCATCCATTTTAT--AGGC--AAGACGGACGAAAGCTCGA--TTTT------------TGCTCTCTCTTCCCTGCCGGGTTTTGATACTATCAGGACTTCGGAGAGGTTGAG-ATGGGTA-GGAGCTCG-ACGC---AACGG-CT-TGCTGTTT-GGAGTGCTTCTGAAACCCGCCCATGCCGAG------TTTATTTTATT-TTATAGAAAGCTAGGAAGGGATTTATAAT--AATTCA--TCGGCC 'Ustilago nigra #83-138 MAT-2' CATTTCGA-TGAAAAACC--TTTTTTCAGAGGTGTGGCTCGCACCTGTCCAACTAAACTTGAGCTACC-TTTTT---CAACAC---------GGTTGCATC--GG-TCGGCCTGTC--AAACAGT-GCGACGCAA----GGAGAAAATCCTCGCGTCTGCTGGGCGACGGACAGACAATTTTATTGAACACTTTTTGATGATCTAGGA--TTTGAAGGAGAAAAAGTCATTTTTACGA--ATGAAATCGACTGGTAATGCGGTCGTCT--AATTTTAAAA----ACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGA----AGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCGGCAGATCTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACGACAGC--TTTTTTCTTTTGG-AAAA-------G-GTTGACGGATCGG-TATTGAGGGTTTTTGCCATTTACCGTGGCTCCCTTGAAATAGATTAGCGCATCCATTTTAT--AGGC--AAGACGGACGAAAGCTCGA--TTTT------------TGCTCTCTCTTCCCTGCCGGGTTTTGATACTATCAGGACTTCGGAGAGGTTGAG-ATGGGTA-GGAGCTCG-ACGC---AACGG-CT-TGCTGTTT-GGAGTGCTTCTGAAACCCGCCCATGCCGAG------TTTATTTTATT-TTATAGAAAGCTAGGAAGGGATTTATAAT--AATTCA--TCGGCC 'Ustilago aegilopsidis #4327 MAT-1' CATTTCGA-TGAAAAACC-TTTTTTTCAGAGGTGTGGCTCGCACCTGTCCAACTAAACTTGAGCTACC-TTTTT---CAACAC---------GGTTGCATC--GG-TCGGCCTGTC--AAACAGT-GCGACGCAA----GGAGAAAATCCTCGCGTCTGCTGGGCGACGGACAGACAATTTTATTGAACACTTTTTGATGATCTAGGA--TTTGAAGGAGAAAAAGTCATTTTTACGA--ATGAAATCGACTGGTAATGCGGTCGTCT--AATTTTAAAA----ACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGA----AGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCGGCAGATCTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACGACAGC--TTTTTTCTTTTGG-AAAA-------G-GTTGACGGATCGG-TATTGAGGGTTTTTGCCATTTACCGTGGCTCCCTTGAAATAGATTAGCGCATCCATTTTAT--AGGC--AAGACGGACGAAAGCTCGA--TTTT------------TGCTCTCTCTTCCCTGCCGGGTTTTGATACTATCAGGACTTCGGAGAGGTTGAG-ATGGGTA-GGAGCTCG-ACGC---AACGG-CT-TGCTGTTT-GGAGTGCTTCTGAAACCCGCCCATGCCGAGTTTATTTTTATTTTATTATTATAGAAAGCTAGGAAGGGATTTATAAT--AATTCA--TCGGCC 'Ustilago nuda #96-253' CATTTCGA-TGAAAAACC--TTTTTTCAGAGGTGTGGCTCGCACCTGTCCAACTAAACTTGAGCTACC-TTTTT---CAACAC---------GGTTGCATC--GG-TCGGCCTGTC--AAACAGC-GCGACGCAA----GGAGAAAATCCTCGCGTCTGCTGGGCGACGGACAGACAATTTTATTGAACACTTTTTGATGATCTAGGA--TTTGAAGGAGAAAAAGTCATTTTTACGA--ATGAAATCGACTGGTAATGCGGTCGTCT--AATTTTAAAA----ACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGA----AGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCGGCAGATCTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACGACAGC--TTTTTTCTTTTGG-AAAA-------G-GTTGACGGATCGG-TATTGAGGGTTTTTGCCATTTATCGTGGCTCCCTTGAAATAGATTAGCGCATCCATTTTAT--AGGC--AAGACGGACGAAAGCTCGA--TTTT------------TGCTCTCTCTTCCCTGCCGGGTTTTGATACTATCAGGACTTCGGAGAGGTTGAG-ATGGGTA-GGAGCTCG-ACGC---AACGG-CT-TGCTGTTT-GGAGTGCTTCTGAAACCCGCCCATGCCGAG-------------TTTTCTTTTAGAAAGCTAGGAAGGAATTTATAAT--AATTCA--TCGGCC 'Ustilago maydis #521 a1b1' CATTTCGA-TGAAAAACCTTTTTTTTCTGAGGTGTGGCTCGCACCTGTCCAACTAAACCTGAGCTACCTTTTTTATATAACAC---------GGTTGCATC--GG-TCGGTCTGTCGAAACCAGTAGCG-CTCAT----AGCGAGCA-----GCGTCTGGGGAAAGACGGGTCGGCGCTTCTTACCAACACTTTT-GAACA-CTAGGA--TTGGAAGGACAAAAA-TCATTTTTTTGATGATGGAAGCGACTGGTAATGCGGTCGTCT-AAATTGAAAAA----ACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGA----AGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCGGCAGATTTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACGACAGCTTTTTTTTCTTGTTGAGAAA-------GAGCTGGCGGATCGG-TAGTGAGGGTCTCTGCCATTTACCGTGGCTCCCTCGAAATGCATTAGCGCATCCATTGGA---AGGCGGAAGACGGACGAAAGCTCGAGTTTTT------------TGCCCTCGCTTCCCTGCCGGGTTTTGATAATGTCAGGACTTCGGAG-CGAAGAG-A-GGGCG-GGAGCTGGAACGCACGAACTT-TTCTGCTGTTTGGGCGTGCTTCTGAACCCCGCCCATGCC----------------TCTTGCTTTACCCCAGAAGGAAGGGATTTATTTTTCAATTCA--TCGGCC Sporisorium_reilianum CATTTCGA-TGAAAAAACCTTTTTTTCTGAGGTGCGGCCCGCACCTGTCCAACTAAACTAGGGCTACTTTTTT----CAACAC---------GGTTGCATC--GGTTGGGTTGGGTCGAGCGAGT--TTTC--------GGA---------CTCGT------GAGGCCGGCCTGACAACTTAACAAAACACTTTT-GATGATCTAGGAATTTTGAAAG--------TC-TATCTT------TGAA--CGGCTGGTAATGCGGTCGTCTAAAAATGGAAAA----ACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGA----AGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCCTGCAGATCTAATCTGGGGAGCATGCCTGTTTGAGGGCCGCGAATTGTTTCGAACC-CA-CGCTTTTTTA--AGT---AAA-------GGCGTGCGGGATCGG-TAGTGAGGG--T-TGCCATTCACCGTGGCTCGCTCGAAATGCATTAGCGCATCCATTGAATTGAGGC-AAAGACGGACGAAGGCTCGC--CTTT------------CGCTCTCTCTTCCTTGCCGGGTTTTGATACTATCAGGGCTTCGGAG--GCGGAGAGAGGGCATG-AGCTGG-ACGC---GAC-GACTTTGTCGGTTGGAAGTGCTTCTGAACCCCGCC-----------------TTTGGCATTTATTTGCCAA---AGGAA-------TTAATTCAA---A--TCGGCC 'Ustilago scitaminea #5 MAT-2' CATTTCGAGTGAAA--CC--TTTTTTCCGAGGTGTGGCTCGCACCTGTCTAACTAAACT-GGGCTACCTATTT----CAACAC---------GGTTGCATC--GGTTGGGTCTG--CCAAACAGT--GCACGAAA----GTA---------CCTGT------GGAGGCAGCCCGATAATCTACCAAAACACTTTT-GATGGTCTAGGA--TTTGAAAG-----------TATTTAACAT--TTTA--CGACTGGTAATGCGGTCGTCTAAAATCTAAAAA----ACAACTTTTGGCAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAATTGCGATAAGTAATGTGAATTGCAGA----AGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGCAGATCTAATCTGGGGAGCATGCCTATTTGAGGGCCGCGAATTGTTTCGAACG-CA-CGCTTTTTTATTACG---AAA-------GAGCTGGCGGATCGG-TAGTGAGGGTTT-TGCCATTTACCGTGGCTCCCTCGAAATGCATTAGTGCATCCATTTGA--CAGGC-AAAGACGGACGAAGGCTCGA--CTTT------------TGGCCCATCTTCCCTGCCAGGTTTTGATAATATCAGGACTTTGGTG--G-TGAGGATGAGCAAGAAGCTGG-ACGC---GACGGCCTTTGCTGATTGG-AGTGCTTCTGAACACCGCCCTAGCTAA----TTTTTTATTTTATTTTTTTGGCTA---GGGAA--------TAATTCAA---A--TCGGCC 'Tilletia walkeri #M96442' CC-TGC-A--GAAGGATCATTAGTGAATTACG-GA-GCTCTT--CTTCGGAAG-AGTCTCCTTCT-C--TTTTATCCCAACACCAAACTAC-GGAAGGAACAAGGCCTTG-CGCTGAGTACCTGTCCGGATGGAACAGAGTTGCTAGTACTTCGGTATTGGCAGCGCTGCTCCAACCCTTTTA---AACAC---T--------TAAGAA--TT-AAAG----AATG---------------TTAAAACTATTG--TCTTCGGACAT---AAACT--AATA---TACAACTTTTGACAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTGG-----GTATTCTCAAGGGCATGCCTGTTTGAGTGTC-ATAATACTCTCAACTCTCA---ATCTTTTTGTAAGAGAAGATTGCTTGGAGTTGGT-GATGGGCGCTTGCCAGATGTAACAGTCTT-----GCTCGCCTTAAATTAATCAGTGGATCTCTTCGAGTCCG------GTCTGACTATGTGT-GATAATTTGATCACATAGAATGTGCT-TGTCA-CAACCGGATTCTG----TATAGAGGCT---------CTGC-------T-------TCCAAC------ACGGAA--TG----------ATTCTTCGGAA------TCAT--CGA--------------TAGCTTTG-----AGCTTG------------ACCTCAAATCAGGTAGGAC 'Tilletia indica #11' CC-TGC-A--GAAGGATCATTAGTGAATTACG-GA-GCTCTT--CTTCGGAAG-AGTCTCCTTCT-C--TTTTATCCCAACACCAAACTAC-GGAAGGAACGAGGCCTTG-CGCTGAGTACCTGTCCGGATGGAACAGAGTTGCTGGTACTTCGGTATTGGCAGCGCTGCTCCAACCCTTTTA---AACAC---T--------TAAGAA--TT-AAAG----AATG---------------TTAAAGCTATTG--TCTTCGGACAT---AAACT--AATA---TACAACTTTTGACAACGGATCTCTTGGTTCTCCCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCCCTTGG-----GTATTCTCAAGGGCATGCCTGTTTGAGTGTC-ATAATACTCTCAACTCTCA---ATCTTTTTGTAAGAGAAGATTGCTTGGAGTTGGT-GATGGGCGCTTGCCAGATGTAACAGTCTT-----GCTCGCCTTAAATTAATCAGTGGATCTCTTCGAGTCCG------GTCTGACTATGTGT-GATAATTTGATCACATAGAATGTGCT-TGTCA-CAACCGGATTCTG----TATAGAGGCT---------CTGC-------T-------TCCAAC------ACGGAA--TG----------ATTCTTCGGAA------TCAT--CGA--------------TAGCTTTGT----AGCTTG------------ACCTCAAATCAGGTAGGAC 'Puccinia caricina #U88234' CC-TGC-A--GAAGGATCATTATTTAAACAAGAGT-GCACTTAATTGTGGCTC-AACCTTTTTATAA--TTTCACCCCAACACTTGGTTGTGTGATAGAACTTGTTTTTGTCATTGCAATCAGGT--AGAAGTAACACTTTTG-------TT--GCATT---ACCCCCCCTCAATTATTTTAA---AACACAAGT--------T--GAA--TT--AAG----AATG---------------TAAAA--TTTTG-----------AT---AAATTGAAATAACTTTTAACTTTTAACAATGGATCTCTTGGCTCTCACATCGATGAAGAACACAGTGAAATGTGATAAGTAATGTGAATTGCAGAATCCAGTGAATCATTGAATCTTTGAACGCATCTTGCACCTTTTG-----GTATTCCAAAAGGTACACCTGTTTGAGTGTC-ATGAAAATCT---CTCACA---A-----------------ATTAATT---TTTGGTGGATG-----TTGAGTGTTGCTGCTATCTA-----GCTCAGTTTAAATATATAAGTCTCATTCTACATGT-TG------GATTGACTTGGTGT-AAT-ATTT----------AATTTTTT-TTTCATCAA--GGATT-AG----TAGCAATACT----------TGCCAATGTTT-------TAGAAC------AGGGAC--TGCT------AAACCCATTATAA------T--T--CTT--------------TTTTTTTAT----A---AG------------ACCTCAAATCAGGTGGGAC ; END; BEGIN CODONS; CODONPOSSET * CodonPositions = N: 1 - 805 ; CODESET * UNTITLED = Universal: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; END;