#NEXUS BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=31; TAXLABELS Aphanomyces_sinensis_NJM_0719_AB531971 Aphanomyces_sinensis_NJM_0817AB531972 Aphanomyces_sinensis_NJM_0818_AB531973 Aphanomyces_sinensis_NJM_0901_AB531974 Aphanomyces_sinensis_NJM_0902_AB531975 Aphanomyces_laevis_AY683885 Aphanomyces_laevis_AM947028 Aphanomyces_laevis_AY310497 Aphanomyces_repetans_AY683890 Aphanomyces_repetans_AY683891 Aphanomyces_repetans_AY683889 Aphanomyces_repetans_AY683892 Aphanomyces_invadans_AY082908 Aphanomyces_invadans_AY082907 Aphanomyces_piscicida_AY455773 Aphanomyces_piscicida_AY283643 Aphanomyces_frigidophilus_AY647192 Aphanomyces_astaci_AY310499 Aphanomyces_astaci_AY683894 Aphanomyces_astaci_AY683893 Aphanomyces_stellatus_AY455774 Aphanomyces_stellatus_AM947029 Aphanomyces_stellatus_AY283647 Aphanomyces_euteiches_AY353908 Aphanomyces_euteiches_AY353909 Aphanomyces_euteiches_AY353910 Aphanomyces_euteiches_AY353902 Aphanomyces_cladogamus_AY353918 Aphanomyces_cladogamus_AY353913 Aphanomyces_cladogamus_AY353915 Pithium_ultimum_EU253560 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=775; FORMAT DATATYPE = DNA INTERLEAVE GAP = - MISSING = ?; MATRIX Aphanomyces_sinensis_NJM_0719_AB531971 CCACACCAAAAAAA-TGTCCACGTGAACGTATTCTTTAT--GAGGCTTGT Aphanomyces_sinensis_NJM_0817AB531972 CCACACCAAAAAAA-TGTCCACGTGAACGTATTCTTTAT--GAGGCTTGT Aphanomyces_sinensis_NJM_0818_AB531973 CCACACCAAAAAAA-TGTCCACGTGAACGTATTCTTTAT--GAGGCTTGT Aphanomyces_sinensis_NJM_0901_AB531974 CCACACCAAAAAAA-TGTCCACGTGAACGTATTCTTTAT--GAGGCTTGT Aphanomyces_sinensis_NJM_0902_AB531975 CCACACCAAAAAAA-TGTCCACGTGAACGTATTCTTTAT--GAGGCTTGT Aphanomyces_laevis_AY683885 CCACACCAAAAAAAATATCCACGTGAACGTACTCTTTAT--GAAGC-CAA Aphanomyces_laevis_AM947028 CCACACCAAAAAAA-TATCCACGTGAACGTACTCTTTAT--GAAGC-CAA Aphanomyces_laevis_AY310497 CCACACCAAAAAAA-TATCCACGTGAACGTACTCTTTAT--GAAGC-CAA Aphanomyces_repetans_AY683890 CCAC?CCAAAAAAA-TATCCACGTGAACGTACTCTTTAT--GAAGC-CAT Aphanomyces_repetans_AY683891 CCACACCAAAAAAA-TATCCACGTGAACGTACTCTTTAT--GAAGC-CAT Aphanomyces_repetans_AY683889 CCACACCAAAAAAA-TATCCACGTGAACGTACTCTTTAT--GAAGC-CAT Aphanomyces_repetans_AY683892 CCACACCAAAAAAA-TATCCACGTGAACGTACTCTTTAT--GAAGC-CAT Aphanomyces_invadans_AY082908 ---------------TATCCACGTGAATGTATTCTTTAT--AAGGCTTGT Aphanomyces_invadans_AY082907 -----------------TCCACGTGAATGTATTCTTTAT--AAGGCTTGT Aphanomyces_piscicida_AY455773 CCACACCAAAAAAA-TATCCACGTGAATGTATTCTTTAT--AAGGCTTGT Aphanomyces_piscicida_AY283643 CCACACCAAAAAAA-TATCCACGTGAATGTATTCTTTAT--AAGGCTTGT Aphanomyces_frigidophilus_AY647192 CCACACCAAAAAAA-TACCCACGTGAATGTATTCTTTAT--AAGGCTTGT Aphanomyces_astaci_AY310499 CCACACCAAAAAAC-TATCCACGTGAATGTATTCTTTAT--AAGGCTTGT Aphanomyces_astaci_AY683894 CCACACCAAAAA?C-TATCCACGTGAATGTATTCTTTAT--AAGGCTTGT Aphanomyces_astaci_AY683893 CCACACCAAAAAAC-TATCCACGTGAATGTATTCTTTAT--AAGGCTTGT Aphanomyces_stellatus_AY455774 CCACACCAAAAAAA-TATCCACGTGAATGTATTCTTTAT--TAGGTTTGT Aphanomyces_stellatus_AM947029 CCACACCAAAAAAA-TATCCACGTGAATGTATTCTTTAT--TAGGTTTGT Aphanomyces_stellatus_AY283647 CCACACCAAAAAAA-TATCCACGTGAATGTATTCTTTAT--GAGGCTTGT Aphanomyces_euteiches_AY353908 CCACACCAAAAAAACCATCCACGTGAATGTATTCTTTAT--GAGGCTTGT Aphanomyces_euteiches_AY353909 CCACACCAAAAAAACCATCCACGTGAATGTATTCTTTAT--GAGGCTTGT Aphanomyces_euteiches_AY353910 CCACACCAAAAAAACCATCCACGTGAATGTATTCTTTAT--GAGGCTTGT Aphanomyces_euteiches_AY353902 CCACACCAAAAAAACCATCCACGTGAATGTATTCTTTAT--GAGGCTTGT Aphanomyces_cladogamus_AY353918 CCACACCAAAAAAACTGTCCACGTGAATGTATTCTTTAT--GAGGCTTGT Aphanomyces_cladogamus_AY353913 -CACACCAAAAAAACTGTCCACGTGAATGTATTCTTTAT--GAGGCTTGT Aphanomyces_cladogamus_AY353915 CCACACCAAAAAAACTGTCCACGTGAATGTATTCTTTAT--GAGGCTTGT Pithium_ultimum_EU253560 GCAAGTCTAGCGCTGTGACTGAGCTGGTGTTTTCATTTTTGGACACTGGA Aphanomyces_sinensis_NJM_0719_AB531971 GCAT------GCTGTTTC-----------GGCAGTGATGCTAGCA--GAA Aphanomyces_sinensis_NJM_0817AB531972 GCAT------GCTGTTTC-----------GGCAGTGATGCTAGCA--GAA Aphanomyces_sinensis_NJM_0818_AB531973 GCAT------GCTGTTTC-----------GGCAGTGATGCTAGCA--GAA Aphanomyces_sinensis_NJM_0901_AB531974 GCAT------GCTGTTTC-----------GGCAGTGATGCTAGCA--GAA Aphanomyces_sinensis_NJM_0902_AB531975 GCAT------GCTGTTTC-----------GGCAGTGATGCTAGCA--GAA Aphanomyces_laevis_AY683885 GTCA--------GGC-GC--------------AAGCTTGTAGGCA--GAA Aphanomyces_laevis_AM947028 GTCA--------GGC-GC--------------AAGCTTGTAGGCA--GAA Aphanomyces_laevis_AY310497 GTCA--------GGC-GC--------------AAGCTTGTAGGCA--GAA Aphanomyces_repetans_AY683890 GTCG--------GGCCAA--------------AAGCTCGTAGGCA--GAA Aphanomyces_repetans_AY683891 GTCG--------GGCCAA--------------AAGCCCGTAGGCA--GAA Aphanomyces_repetans_AY683889 GTCG--------GGCCAA--------------AAGCCCGTAGGCA--GAA Aphanomyces_repetans_AY683892 GTCG--------GGCCAA--------------AAGCTCGTAGGCA--GAA Aphanomyces_invadans_AY082908 GCTGA--------GCTCAC--------------ACTCGGCTAGCC--GAA Aphanomyces_invadans_AY082907 GCTGA--------GCTCAC--------------ACTCGGCTAGCC--GAA Aphanomyces_piscicida_AY455773 GCTGA--------GCTCAC--------------ACTCGGCTAGCC--GAA Aphanomyces_piscicida_AY283643 GCTGA--------GCTCAC--------------ACTCGGCTAGCC--GAA Aphanomyces_frigidophilus_AY647192 GCTGG-------GATTTA---------------TTCCGGCTAGCC--GAA Aphanomyces_astaci_AY310499 GCTGA----GGATGTTC-------TTCGGGACGACCCGGCTAGCA--GAA Aphanomyces_astaci_AY683894 GCTG-----GGATGTTC-------TTCGGGACGACCCGGCTAGCA--GAA Aphanomyces_astaci_AY683893 GCTG-----GGATGTTC-------TTCGGGACGACCCGGCTAGCA--GAA Aphanomyces_stellatus_AY455774 GCTG------GTCATCT-------CTCGGGAT-GTCTGGCTAGCC--GAA Aphanomyces_stellatus_AM947029 GCTG------GTCATCT-------CTCGGGAT-GTCTGGCTAGCC--GAA Aphanomyces_stellatus_AY283647 GCTA------GGCGTCT-------CTCGGGAT-GTCGGGCTAGCC--GAA Aphanomyces_euteiches_AY353908 GCTC--------TTTT------------------CAGGGCTAGCC--GAA Aphanomyces_euteiches_AY353909 GCTC--------TTTT------------------CAGGGCTAGCC--GAA Aphanomyces_euteiches_AY353910 GCTC--------TTTT------------------CAGGGCTAGCC--GAA Aphanomyces_euteiches_AY353902 GCTC--------TTTT------------------CAGGGCTAGCC--GAA Aphanomyces_cladogamus_AY353918 GCTC--------TAAC--------------------GGGCTAGCC--GAA Aphanomyces_cladogamus_AY353913 GCTC--------TAAC--------------------GGGCTAGCC--GAA Aphanomyces_cladogamus_AY353915 GCTC--------TAAC--------------------GGGCTAGCC--GAA Pithium_ultimum_EU253560 ACGGGAGTCAGCAGGACG---------AAGGTTGGTCTGTTGTAAT-GCA Aphanomyces_sinensis_NJM_0719_AB531971 GGTTTCTT-CGGA--GACCGATGTC------TATTTCATCCCATAT-TAT Aphanomyces_sinensis_NJM_0817AB531972 GGTTTCTT-CGGA--GACCGATGTC------TATTTCATCCCATAT-TAT Aphanomyces_sinensis_NJM_0818_AB531973 GGTTTCTT-CGGA--GACCGATGTC------TATTTCATCCCATAT-TAT Aphanomyces_sinensis_NJM_0901_AB531974 GGTTTCTT-CGGA--GACCGATGTC------TATTTCATCCCATAT-TAT Aphanomyces_sinensis_NJM_0902_AB531975 GGTTTCTT-CGGA--GACCGATGTC------TATTTCATCCCATAT-TAT Aphanomyces_laevis_AY683885 GGTTTCGC-AAGA--AGCCGATGTG-------ATTTCATCCCTTTT-TAA Aphanomyces_laevis_AM947028 GGTTTCGC-AAGA--AGCCGATGTG-------ATTTCATCCCTTTT-TAA Aphanomyces_laevis_AY310497 GGTTTCGC-AAGA--AGCCGATGTG-------ATTTCATCCCTTTT-TAA Aphanomyces_repetans_AY683890 GG?TTCGC-A?GA--AGCCGATGTG-------ATTTCATCCCTTTT---A Aphanomyces_repetans_AY683891 GG?TTCGC-ARGA--AGCCGATGTG-------ATTTCATCCCTTTT---A Aphanomyces_repetans_AY683889 GGTTTCGC-AAGA--AGCCGATGTG-------ATTTCATCCCTTTT---A Aphanomyces_repetans_AY683892 GGTTTCGC-AAGA--AGCCGATGTG-------ATTTCATCCCTTTT---A Aphanomyces_invadans_AY082908 GGTTTCGC-AAGA--AACCGATGTA------CTTTTAATCCCTT---TAA Aphanomyces_invadans_AY082907 GGTTTCGC-AAGA--AACCGATGTA------CTTTTAATCCCTT---TAA Aphanomyces_piscicida_AY455773 GGTTTCGC-AAGA--AACCGATGTA------CTTTTAATCCCTT---TAA Aphanomyces_piscicida_AY283643 G-TTTCGC-AAGA--AAC-GATGTA------CTTTTAATCCCTT---TAA Aphanomyces_frigidophilus_AY647192 GGTTTCGC-AAGA--AACCGATGTA------CTTTTAATCCCTT---TAA Aphanomyces_astaci_AY310499 GGTTTCGC-AAGA--AGCCGATGTA------CTTTTAATCCCTTCT-TAA Aphanomyces_astaci_AY683894 GGTTTCGC-AAGA--AGCCGATGTA------CTTTTAATCCCTTCT-TAA Aphanomyces_astaci_AY683893 GGTTTCGC-AAGA--AGCCGATGTA------CTTTTAATCCCTTCT-TAA Aphanomyces_stellatus_AY455774 GGTTTCGC-AAGA--GACCGATGTA------CTTTTAATCCCTTTT-AAA Aphanomyces_stellatus_AM947029 GGTTTCGC-AAGA--GACCGATGTA------CTTTTAATCCCTTTT-AAA Aphanomyces_stellatus_AY283647 GGTTTCGC-AAGG--AACCGATGAA------TTTTTAATCCCTTTT-AAA Aphanomyces_euteiches_AY353908 GGTTTCGC-AAGG--AACCGATGTAA-----TTTTTAATCCCTTT--ATA Aphanomyces_euteiches_AY353909 GGTTTCGC-AAGG--AACCGATGTAA-----TTTTTAATCCCTTT--ATA Aphanomyces_euteiches_AY353910 GGTTTCGC-AAGG--AACCGATGTAA-----TTTTTAATCCCTTT--ATA Aphanomyces_euteiches_AY353902 GGTTTCGC-AAGG--AACCGATGTAA-----TTTTTAATCCCTTT--ATA Aphanomyces_cladogamus_AY353918 GGTTTCGA-AAGG--AACCGATGTAT-----TTTTTAATCCCTTTT-ATA Aphanomyces_cladogamus_AY353913 GGTTTCGA-AAGG--AACCGATGTAT-----TTTTTAATCCCTTTT-ATA Aphanomyces_cladogamus_AY353915 GGTTTCGA-AAGG--AACCGATGTAT-----TTTTTAATCCCTTTT-ATA Pithium_ultimum_EU253560 AGTTATGA-TGGACTAGCTGATGAACTTTTGTTTTTAAACCCTTACCTAA Aphanomyces_sinensis_NJM_0719_AB531971 AAAAATGACTGA--AAACCTAGCCATCAGAAATGATAGCTTGTAATCAAT Aphanomyces_sinensis_NJM_0817AB531972 AAAAATGACTGA--AAACCTAGCCATCAGAAATGATAGCTTGTAATCAAT Aphanomyces_sinensis_NJM_0818_AB531973 AAAAATGACTGA--AAACCTAGCCATCAGAAATGATAGCTTGTAATCAAT Aphanomyces_sinensis_NJM_0901_AB531974 AAAAATGACTGA--AAACCTAGCCATCAGAAATGATAGCTTGTAATCAAT Aphanomyces_sinensis_NJM_0902_AB531975 AAAAATGACTGA--AAACCTAGCCATCAGAAATGATAGCTTGTAATCAAT Aphanomyces_laevis_AY683885 ATAAACGACTGAT-AGAGATAGCCATCAGAAATGATAGCTTGTAAT-AAA Aphanomyces_laevis_AM947028 ATAAACGACTGAT-AGAGATAGCCATCAGAAATGATAGCTTGTAAT-AAA Aphanomyces_laevis_AY310497 ATAAACGACTGAT-AGAGATAGCCATCAGAAATGATAGCTTGTAAT-AAA Aphanomyces_repetans_AY683890 ATAAATGACTGAT-AGAGATAGCCATCAGAAATGATTGCTTGTAAT-AAA Aphanomyces_repetans_AY683891 ATAAATGACTGAT-AGAGATAGCCATCAGAAATGATCGCTTGTAAT-AAA Aphanomyces_repetans_AY683889 ATAAATGACTGAT-AGAGATAGCCATCAGAAATGATCGCTTGTAAT-AAA Aphanomyces_repetans_AY683892 ATAAATGACTGAT-AGAGATAGCCATCAGAAATGATTGCTTGTAAT-AAA Aphanomyces_invadans_AY082908 ACTACATACTGA--AACCTTAGCCATCAGAAATGATAGCTTGTAAT-CAA Aphanomyces_invadans_AY082907 ACTACATACTGA--AACCTTAGCCATCAGAAATGATAGCTTGTAAT-CAA Aphanomyces_piscicida_AY455773 ACTACATACTGA--AACCTTAGCCATCAGAAATGATAGCTTGTAAT-CAA Aphanomyces_piscicida_AY283643 ACTACATACTGA--AACCTTAGCCATCAGAAATGATAGCTTGTAAT-CAA Aphanomyces_frigidophilus_AY647192 ATTAAATACTGA--TACCTTAGCCATCAGAAATGATAGCTTGTAAT-TAA Aphanomyces_astaci_AY310499 ATAACATACTGAT-AAACTTAGCCGTCAGAAATGATAGCTTGTAAT-AAA Aphanomyces_astaci_AY683894 ATAACATACTGAT-AAACTTAGCCGTCAGAAATGATAGCTTGTAAT-AAA Aphanomyces_astaci_AY683893 ATAACATACTGAT-AAACTTAGCCGTCAGAAATGATAGCTTGTAAT-AAA Aphanomyces_stellatus_AY455774 ACAATAAACTGAT-AAACTTAGCCATCAGAAATGATAGCTTGTAATTAAA Aphanomyces_stellatus_AM947029 ACAATTAACTGAT-AAACTTAGCCATCAGAAATGATAGCTTGTAATTAAA Aphanomyces_stellatus_AY283647 -CAAATTACTGAT-AATCTTAGCCATCAGAAATGATAGCTTGTAATTAAA Aphanomyces_euteiches_AY353908 CTAAATGACTGATTTAAACTAGCAT-CAGAAATGAA-GCTTGTCAATTCT Aphanomyces_euteiches_AY353909 CTAAATGACTGATTTAAACTAGCAT-CAGAAATGAA-GCTTGTCAATTCT Aphanomyces_euteiches_AY353910 CTAAATGACTGATTTAAACTAGCAT-CAGAAATGAA-GCTTGTCAATTCT Aphanomyces_euteiches_AY353902 CTAAATGACTGATTTAAACTAGCAT-CAGAAATGAA-GCTTGTCAATTCT Aphanomyces_cladogamus_AY353918 CTTAATGACTGATAACACTTAGCGTTCAGAAATGATTGCTTGTAATTTCT Aphanomyces_cladogamus_AY353913 CTTAATGACTGATAACACTTAGCGTTCAGAAATGATTGCTTGTAATTTCT Aphanomyces_cladogamus_AY353915 CTTAATGACTGATAACACTTAGCGTTCAGAAATGATTGCTTGTAATTTCT Pithium_ultimum_EU253560 ATACTAGATTTAT---ACTGTGGGGACGAAAGTCCTTGCTTTTACT-AGA Aphanomyces_sinensis_NJM_0719_AB531971 TTACAACTTTCAACAGTGGATGTCTGGGCTCGTGCATCGATGAAGAGCGC Aphanomyces_sinensis_NJM_0817AB531972 TTACAACTTTCAACAGTGGATGTCTGGGCTCGTGCATCGATGAAGAGCGC Aphanomyces_sinensis_NJM_0818_AB531973 TTACAACTTTCAACAGTGGATGTCTGGGCTCGTGCATCGATGAAGAGCGC Aphanomyces_sinensis_NJM_0901_AB531974 TTACAACTTTCAACAGTGGATGTCTGGGCTCGTGCATCGATGAAGAGCGC Aphanomyces_sinensis_NJM_0902_AB531975 TTACAACTTTCAACAGTGGATGTCTGGGCTCGTGCATCGATGAAGAGCGC Aphanomyces_laevis_AY683885 ATACAACTTTCAACAGTGGATGTCTCGGCTCGCACATCGATGAAGAGCGC Aphanomyces_laevis_AM947028 ATACAACTTTCAACAGTGGATGTCTCGGCTCGCACATCGATGAAGAGCGC Aphanomyces_laevis_AY310497 ATACAACTTTCAACAGTGGATGTCTCGGCTCGCACATCGATGAAGAGCGC Aphanomyces_repetans_AY683890 ATACAACTTTCAACAGTGGATGTCTCGGCTCGCACATCGATGAAGAGCGC Aphanomyces_repetans_AY683891 ATACAACTTTCAACAGTGGATGTCTCGGCTCGCACATCGATGAAGAGCGC Aphanomyces_repetans_AY683889 ATACAACTTTCAACAGTGGATGTCTCGGCTCGCACATCGATGAAGAGCGC Aphanomyces_repetans_AY683892 ATACAACTTTCAACAGTGGATGTCTCGGCTCGCACATCGATGAAGAGCGC Aphanomyces_invadans_AY082908 ATACAACTTTCAACAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGC Aphanomyces_invadans_AY082907 ATACAACTTTCAACAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGC Aphanomyces_piscicida_AY455773 ATACAACTTTCAACAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGC Aphanomyces_piscicida_AY283643 ATACAACTTTCAACAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGC Aphanomyces_frigidophilus_AY647192 ATACAACTTTCAACAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGC Aphanomyces_astaci_AY310499 ATACAACTTTCAACAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGC Aphanomyces_astaci_AY683894 ATACAACTTTCAACAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGC Aphanomyces_astaci_AY683893 ATACAACTTTCAACAGTG?ATGT?TAGGCTCGC?CATCGATGAAGAACGC Aphanomyces_stellatus_AY455774 ATACAACTTTCAACAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGC Aphanomyces_stellatus_AM947029 ATACAACTTTCAACAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGC Aphanomyces_stellatus_AY283647 ATACAACTTTCAACAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGC Aphanomyces_euteiches_AY353908 ATACAACTTTCAACAGTGGATGTCTAGGCTCGCACATCGATGAAGACCAC Aphanomyces_euteiches_AY353909 ATACAACTTTCAACAGTGGATGTCTAGGCTCGCACATCGATGAAGACCAC Aphanomyces_euteiches_AY353910 ATACAACTTTCAACAGTGGATGTCTAGGCTCGCACATCGATGAAGACCAC Aphanomyces_euteiches_AY353902 ATACAACTTTCAACAGTGGATGTCTAGGCTCGCACATCGATGAAGACCAC Aphanomyces_cladogamus_AY353918 ATACAACTTTCAACAGTGGATGTCTAGGCTCGCACATCGATGAAGACCAC Aphanomyces_cladogamus_AY353913 ATACAACTTTCAACAGTGGATGTCTAGGCTCGCACATCGATGAAGACCAC Aphanomyces_cladogamus_AY353915 ATACAACTTTCAACAGTGGATGTCTAGGCTCGCACATCGATGAAGACCAC Pithium_ultimum_EU253560 TAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGC Aphanomyces_sinensis_NJM_0719_AB531971 TGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAA Aphanomyces_sinensis_NJM_0817AB531972 TGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAA Aphanomyces_sinensis_NJM_0818_AB531973 TGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAA Aphanomyces_sinensis_NJM_0901_AB531974 TGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAA Aphanomyces_sinensis_NJM_0902_AB531975 TGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAA Aphanomyces_laevis_AY683885 GGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAA Aphanomyces_laevis_AM947028 GGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAA Aphanomyces_laevis_AY310497 GGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAA Aphanomyces_repetans_AY683890 GGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAA Aphanomyces_repetans_AY683891 GGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAA Aphanomyces_repetans_AY683889 GGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAA Aphanomyces_repetans_AY683892 GGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAA Aphanomyces_invadans_AY082908 TGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAA Aphanomyces_invadans_AY082907 TGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAA Aphanomyces_piscicida_AY455773 TGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAA Aphanomyces_piscicida_AY283643 TGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAA Aphanomyces_frigidophilus_AY647192 TGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAA Aphanomyces_astaci_AY310499 TGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAA Aphanomyces_astaci_AY683894 TGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAA Aphanomyces_astaci_AY683893 TGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAA Aphanomyces_stellatus_AY455774 TGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAA Aphanomyces_stellatus_AM947029 TGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAA Aphanomyces_stellatus_AY283647 TGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAA Aphanomyces_euteiches_AY353908 AGCGAACTGTGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAA Aphanomyces_euteiches_AY353909 AGCGAACTGTGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAA Aphanomyces_euteiches_AY353910 AGCGAACTGTGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAA Aphanomyces_euteiches_AY353902 AGCGAACTGTGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAA Aphanomyces_cladogamus_AY353918 AGCGAAATGTGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAA Aphanomyces_cladogamus_AY353913 AGCGAAATGTGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAA Aphanomyces_cladogamus_AY353915 AGCGAAATGTGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAA Pithium_ultimum_EU253560 TGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAA Aphanomyces_sinensis_NJM_0719_AB531971 ATCTTGAACGCATATTGCACTTTCGGGTTAGTCCTGGAAGTATGTCTGTA Aphanomyces_sinensis_NJM_0817AB531972 ATCTTGAACGCATATTGCACTTTCGGGTTAGTCCTGGAAGTATGTCTGTA Aphanomyces_sinensis_NJM_0818_AB531973 ATCTTGAACGCATATTGCACTTTCGGGTTAGTCCTGGAAGTATGTCTGTA Aphanomyces_sinensis_NJM_0901_AB531974 ATCTTGAACGCATATTGCACTTTCGGGTTAGTCCTGGAAGTATGTCTGTA Aphanomyces_sinensis_NJM_0902_AB531975 ATCTTGAACGCATATTGCACTTTCGGGTTAGTCCTGGAAGTATGTCTGTA Aphanomyces_laevis_AY683885 ATCTTGAACGCATATTGCACTTTCGGGTTAGTCCTGGAAGTATGTCTGTA Aphanomyces_laevis_AM947028 ATCTTGAACGCATATTGCACTTTCGGGTTAGTCCTGGAAGTATGTCTGTA Aphanomyces_laevis_AY310497 ATCTTGAACGCATATTGCACTTTCGGGTTAGTCCTGGAAGTATGTCTGTA Aphanomyces_repetans_AY683890 ATCTTGAACGCATATTGCACTTTCGGGTTAGTCCTGGAAGTATGTCTGTA Aphanomyces_repetans_AY683891 ATCTTGAACGCATATTGCACTTTCGGGTTAGTCCTGGAAGTATGTCTGTA Aphanomyces_repetans_AY683889 ATCTTGAACGCATATTGCACTTTCGGGTTAGTCCTGGAAGTATGTCTGTA Aphanomyces_repetans_AY683892 ATCTTGAACGCATATTGCACTTTCGGGTTAGTCCTGGAAGTATGTCTGTA Aphanomyces_invadans_AY082908 ATTTTGAACGCATATTGCACTTTCGGGTTAGTCCTGGAAGTATGTCTGTA Aphanomyces_invadans_AY082907 ATTTTGAACGCATATTGCACTTTCGGGTTAGTCCTGGAAGTATGTCTGTA Aphanomyces_piscicida_AY455773 ATTTTGAACGCATATTGCACTTTCGGGTTAGTCCTGGAAGTATGTCTGTA Aphanomyces_piscicida_AY283643 ATTTTGAACGCATATTGCACTTTCGGGTTAGTCCTGGAAGTATGTCTGTA Aphanomyces_frigidophilus_AY647192 ATTTTGAACGCATATTGCACTTTCGGGTTAGTCCTGGAAGTATGTCTGTA Aphanomyces_astaci_AY310499 ATTTTGAACGCATATTGCACTTTCGGGTTAGTCCTGGAAGTATGTCTGTA Aphanomyces_astaci_AY683894 ATTTTGAACGCATATTGCACTTTCGGGTTAGTCCTGGAAGTATGTCTGTA Aphanomyces_astaci_AY683893 ATTTTGAACGCATATTGCACTTTCGGGTTAGTCCTGGAAGTATGTCTGTA Aphanomyces_stellatus_AY455774 ATTTTGAACGCATATTGCACTTTCGGGTTAGTCCTGGAAGTATGTCTGTA Aphanomyces_stellatus_AM947029 ATTTTGAACGCATATTGCACTTTCGGGTTAGTCCTGGAAGTATGTCTGTA Aphanomyces_stellatus_AY283647 ATTTTGAACGCATATTGCACTTTCGGGTTAGTCCTGGAAGTATGTCTGTA Aphanomyces_euteiches_AY353908 ACGTTGAACGCATATTGCACTTTCGGGTTAGTCCTGGAAGTATGTCTGTA Aphanomyces_euteiches_AY353909 ACGTTGAACGCATATTGCACTTTCGGGTTAGTCCTGGAAGTATGTCTGTA Aphanomyces_euteiches_AY353910 ACGTTGAACGCATATTGCACTTTCGGGTTAGTCCTGGAAGTATGTCTGTA Aphanomyces_euteiches_AY353902 ACGTTGAACGCATATTGCACTTTCGGGTTAGTCCTGGAAGTATGTCTGTA Aphanomyces_cladogamus_AY353918 ATGTTGAACGCATATTGCACTTTCGGGTTAGTCCTGGAAGTATGTCTGTA Aphanomyces_cladogamus_AY353913 ATGTTGAACGCATATTGCACTTTCGGGTTAGTCCTGGAAGTATGTCTGTA Aphanomyces_cladogamus_AY353915 ATGTTGAACGCATATTGCACTTTCGGGTTAGTCCTGGAAGTATGTCTGTA Pithium_ultimum_EU253560 ATTTTGAACGCATATTGCACTTTCGGGTTATGCCTGGAAGTATGTCTGTA Aphanomyces_sinensis_NJM_0719_AB531971 TCAGTGTCCGT-AGTACAAAATTGATTTATCTATTT---------TTGGA Aphanomyces_sinensis_NJM_0817AB531972 TCAGTGTCCGT-AGTACAAAATTGATTTATCTATTT---------TTGGA Aphanomyces_sinensis_NJM_0818_AB531973 TCAGTGTCCGT-AGTACAAAATTGATTTATCTATTT---------TTGGA Aphanomyces_sinensis_NJM_0901_AB531974 TCAGTGTCCGT-AGTACAAAATTGATTTATCTATTT---------TTGGA Aphanomyces_sinensis_NJM_0902_AB531975 TCAGTGTCCGT-AGTACAAAATTGATTTATCTATTT---------TTGGA Aphanomyces_laevis_AY683885 TCAGTGTCCGTCGACACCAAATTGTTTTATCAT-TG---------ATTGA Aphanomyces_laevis_AM947028 TCAGTGTCCGTCGACACCAAATTGTTTTATCAT-TG---------ATTGA Aphanomyces_laevis_AY310497 TCAGTGTCCGTCGACACCAAATTGTTTTATCAT-TG---------ATTGA Aphanomyces_repetans_AY683890 TCAGTGTCCGTCGACACCAAATTGTTTGATCATGTG---------AGTGA Aphanomyces_repetans_AY683891 TCAGTGTCCGTCGACACCAAATTGTTTGATCATGTG---------AGTGA Aphanomyces_repetans_AY683889 TCAGTGTCCGTCGACACCAAATTGTTTGATCATGTG---------AGTGA Aphanomyces_repetans_AY683892 TCAGTGTCCGTCGACACCAAATTGTTTGATCATGTG---------AGTGA Aphanomyces_invadans_AY082908 TCAGTGTCCGTTAATACAAAATTGTTTTGT-CTTT-----------GGA- Aphanomyces_invadans_AY082907 TCAGTGTCCGTTAATACAAAATTGTTTTGT-CTTT-----------GGA- Aphanomyces_piscicida_AY455773 TCAGTGTCCGTTAATACAAAATTGTTTTGT-CTTT-----------GGA- Aphanomyces_piscicida_AY283643 TCAGTGTCCGTTAATACAAAATTGTTTTGT-CTTT-----------GGA- Aphanomyces_frigidophilus_AY647192 TCAGTGTCCGTTAATACAAAATTGTTTTGT-CTTT-----------CGA- Aphanomyces_astaci_AY310499 TCAGTGTCCGTTAATACAAAATTGTTTTGT-CTTT-----------GGA- Aphanomyces_astaci_AY683894 TCAGTGTCCGTTAATACAAAATTGTTTTGT-CTTT-----------GGA- Aphanomyces_astaci_AY683893 TCAGTGTCCGTTAATACAAAATTGTTTTGT-CTTT-----------GGA- Aphanomyces_stellatus_AY455774 TCAGTGTCCGTTAATACAAACTTGTTTTATTCTTT-----------GGAG Aphanomyces_stellatus_AM947029 TCAGTGTCCGTTAATACAAACTTGTTTTATTCTTT-----------GGAG Aphanomyces_stellatus_AY283647 TCAGTGTCCGTTAATACAAACTTGTTTTATTCTTT-----------GGAG Aphanomyces_euteiches_AY353908 TCAGTGTCCGTCAATACAAACTTGTTTTATCTTTT------------GA- Aphanomyces_euteiches_AY353909 TCAGTGTCCGTCAATACAAACTTGTTTTATCTTTT------------GA- Aphanomyces_euteiches_AY353910 TCAGTGTCCGTCAATACAAACTTGTTTTATCTTTT------------GA- Aphanomyces_euteiches_AY353902 TCAGTGTCCGTCAATACAAACTTGTTTTATCTTTT------------GA- Aphanomyces_cladogamus_AY353918 TCAGTGTCCGTAAACACAAACTTGTTTTATCTTTTT---------TGGA- Aphanomyces_cladogamus_AY353913 TCAGTGTCCGTAAACACAAACTTGTTTTATCTTTTT---------TGGA- Aphanomyces_cladogamus_AY353915 TCAGTGTCCGTAAACACAAACTTGTTTTATCTTTTT---------TGGA- Pithium_ultimum_EU253560 TCAGTGTCCGTAAAT-CAAACTTGCCTTTCTTTTTCTGTGTAGTCAGGGA Aphanomyces_sinensis_NJM_0719_AB531971 TGAGTCA---GAATGTGGAG-GTCTTG-----------------CGT-GT Aphanomyces_sinensis_NJM_0817AB531972 TGAGTCA---GAATGTGGAG-GTCTTG-----------------CGT-GT Aphanomyces_sinensis_NJM_0818_AB531973 TGAGTCA---GAATGTGGAG-GTCTTG-----------------CGT-GT Aphanomyces_sinensis_NJM_0901_AB531974 TGAGTCA---GAATGTGGAG-GTCTTG-----------------CGT-GT Aphanomyces_sinensis_NJM_0902_AB531975 TGAGTCA---GAATGTGGAG-GTCTTG-----------------CGT-GT Aphanomyces_laevis_AY683885 TAGAGCA---GACTGTGAAG-GTCTTG-----------------TTTCGG Aphanomyces_laevis_AM947028 TAGAGCA---GACTGTGAAG-GTCTTG-----------------TTTCGG Aphanomyces_laevis_AY310497 TAGAGCA---GACTGTGAAG-GTCTTG-----------------TTTCGG Aphanomyces_repetans_AY683890 TGGAACA---GAATGTGAGG-GTCTTG-----------------TTTCGG Aphanomyces_repetans_AY683891 TGGAACA---GAATGTGAGG-GTCTTG-----------------TTTCGG Aphanomyces_repetans_AY683889 TGGAACA---GAATGTGAGG-GTCTTG-----------------TTTCGG Aphanomyces_repetans_AY683892 TGGAACA---GAATGTGAGG-GTCTTG-----------------TTTCGG Aphanomyces_invadans_AY082908 TAAAACA---GAATGTGAAG-GTCTTG-----------------TTTCGG Aphanomyces_invadans_AY082907 TAAAACA---GAATGTGAAG-GTCTTG-----------------TTTCGG Aphanomyces_piscicida_AY455773 TAAAACA---GAATGTGAAG-GTCTTG-----------------TTTCGG Aphanomyces_piscicida_AY283643 TAAAACA---GAATGTGAAG-GTCTTG-----------------TTTCGG Aphanomyces_frigidophilus_AY647192 TGAAACA---GAATGTGAAG-GTCTTG-----------------TTTCGG Aphanomyces_astaci_AY310499 CGAAGCA---GAATGTGAAG-GTCTTG-----------------TTTCGA Aphanomyces_astaci_AY683894 CGAAGCA---?AATGTGAAG-GTCTTG-----------------TTTCGA Aphanomyces_astaci_AY683893 CGAAGCA---GAATGTGAAG-GTCTTG-----------------TTTCGA Aphanomyces_stellatus_AY455774 TGAAACA---GAATGTGAAG-GTCTTG-----------------CTTCGG Aphanomyces_stellatus_AM947029 TGAAACA---GAATGTGAAG-GTCTTG-----------------CTTCGG Aphanomyces_stellatus_AY283647 TGAAACA---GAATGTGAGG-GTCTTG-----------------CTTTGG Aphanomyces_euteiches_AY353908 TAAAGCA---GACTGTGAAG-GTCTTG-----------------TTTTGA Aphanomyces_euteiches_AY353909 TAAAGCA---GACTGTGAAG-GTCTTG-----------------TTTTGA Aphanomyces_euteiches_AY353910 TAAAGCA---GACTGTGAAG-GTCTTG-----------------TTTTGA Aphanomyces_euteiches_AY353902 TAAAGCA---GACTGTGAAG-GTCTTG-----------------TTTTGA Aphanomyces_cladogamus_AY353918 TAAAGCA---GACTGTGAAG-GTCTTG-----------------TTTTGA Aphanomyces_cladogamus_AY353913 TAAAGCA---GACTGTGAAG-GTCTTG-----------------TTTTGA Aphanomyces_cladogamus_AY353915 TAAAGCA---GACTGTGAAG-GTCTTG-----------------TTTTGA Pithium_ultimum_EU253560 TGGAATGTGCAGATGTGAAGTGTCTCGCATGGTTGCGTTCGTTTTTTCGA Aphanomyces_sinensis_NJM_0719_AB531971 T-----------CAAGTCCTCTGAAATG---AAAGTCCCTGTGTAATGAT Aphanomyces_sinensis_NJM_0817AB531972 T-----------CAAGTCCTCTGAAATG---AAAGTCCCTGTGTAATGAT Aphanomyces_sinensis_NJM_0818_AB531973 T-----------CAAGTCCTCTGAAATG---AAAGTCCCTGTGTAATGAT Aphanomyces_sinensis_NJM_0901_AB531974 T-----------CAAGTCCTCTGAAATG---AAAGTCCCTGTGTAATGAT Aphanomyces_sinensis_NJM_0902_AB531975 T-----------CAAGTCCTCTGAAATG---AAAGTCCCTGTGTAATGAT Aphanomyces_laevis_AY683885 ------------CAAGTCCTTTGAAATG---AAGGTCCCTCGGTTGATGT Aphanomyces_laevis_AM947028 ------------CAAGTCCTTTGAAATG---AAGGTCCCTCGGTTGATGT Aphanomyces_laevis_AY310497 ------------CAAGTCCTTTGAAATG---AAGGTCCCTCGGTTGATGT Aphanomyces_repetans_AY683890 ------------CAAGTCCTTTTAAAAG---AGAGTCCCTCGCTTGATGT Aphanomyces_repetans_AY683891 ------------CAAGTCCTTTTAAAAG---AGAGTCCCTCGCTTGATGT Aphanomyces_repetans_AY683889 ------------CAAGTCCTTTTAAAAG---AGAGTCCCTCGCTTGATGT Aphanomyces_repetans_AY683892 ------------CAAGTCCTTTTAAAAG---AGAGTCCCTCGCTTGATGT Aphanomyces_invadans_AY082908 ------------CAAGTCCTTTTAAATG---ACGGTCCCTGTATAGCTGT Aphanomyces_invadans_AY082907 ------------CAAGTCCTTTTAAATG---ACGGTCCCTGTATAGCTGT Aphanomyces_piscicida_AY455773 ------------CAAGTCCTTTTAAATG---ACGGTCCCTGTATAGCTGT Aphanomyces_piscicida_AY283643 ------------CAAGTCCTTTTAAATG---ACGGTCCCTGTATAGCTGT Aphanomyces_frigidophilus_AY647192 ------------CAAGTCCTTTTAAATG---ACGGTCCCTGTATAGCTGT Aphanomyces_astaci_AY310499 ------------CAAGTCCTTTTAAATG---ACGGTCCCTGTATAGCTGT Aphanomyces_astaci_AY683894 ------------CAAGTCCTTTTAAATG---ACGGTCCCTGTATAGCTGT Aphanomyces_astaci_AY683893 ------------CAAGTCCTTTTAAATG---ACGGTCCCTGTATAGCTGT Aphanomyces_stellatus_AY455774 ------------CAAGTCCTTTTAAATG---ACGGTCCCTGTATAGCGA- Aphanomyces_stellatus_AM947029 ------------CAAGTCCTTTTAAATG---ACGGTCCCTGTATAGCGA- Aphanomyces_stellatus_AY283647 ------------CAAGTCCTTTTAAAAG---ACGGTCCCTGTGTAGCGA- Aphanomyces_euteiches_AY353908 A-----------CAAGTCCTTTGAAAAG---AAAGTCCCTGTATACGAGT Aphanomyces_euteiches_AY353909 A-----------CAAGTCCTTTGAAAAG---AAAGTCCCTGTATACGAGT Aphanomyces_euteiches_AY353910 A-----------CAAGTCCTTTGAAAAG---AAAGTCCCTGTATACGAGT Aphanomyces_euteiches_AY353902 A-----------CAAGTCCTTTGAAATG---AAAGTCCCTGTATACGAGT Aphanomyces_cladogamus_AY353918 A-----------CAAGTCCTTTGAAAAG---AAAGTCCCTGTATACGAGT Aphanomyces_cladogamus_AY353913 A-----------CAAGTCCTTTGAAAAG---AAAGTCCCTGTATACGAGT Aphanomyces_cladogamus_AY353915 A-----------CAAGTCCTTTGAAAAG---AAAGTCCCTGTATACGAGT Pithium_ultimum_EU253560 TCGAGAATCTGTCGAGTCCTTTTAAATGGACACGGTCTTTTCTATGGTTT Aphanomyces_sinensis_NJM_0719_AB531971 GCG---AATGCATTATGTAAAGGACTGCATG--TCTTTTTTTTC---TAA Aphanomyces_sinensis_NJM_0817AB531972 GCG---AATGCATTATGTAAAGGACTGCATG--TCTTTTTTTTC---TAA Aphanomyces_sinensis_NJM_0818_AB531973 GCG---AATGCATTATGTAAAGGACTGCATG--TCTTTTTTTTC---TAA Aphanomyces_sinensis_NJM_0901_AB531974 GCG---AATGCATTATGTAAAGGACTGCATG--TCTTTTTTTTC---TAA Aphanomyces_sinensis_NJM_0902_AB531975 GCG---AATGCATTATGTAAAGGACTGCATG--TCTTTTTTTTC---TAA Aphanomyces_laevis_AY683885 CAG---AGTACATTACATAGAGGACTATTTG--GATCTTGTTTC-GGCAT Aphanomyces_laevis_AM947028 CAG---AGTACATTACATAGAGGACTATTTG--GATCTTGTTTC-GGCAT Aphanomyces_laevis_AY310497 CAG---AGTACATTACATAGAGGACTATTTG--GATCTTGTTTC-GGCAT Aphanomyces_repetans_AY683890 TTT----GTGCATTAATTAGAGGACTGTTTG--GATCTTGTTTC-GGCAT Aphanomyces_repetans_AY683891 TTT----GTGCATTAATTAGAGGACTGTTTG--GATCTTGTTTC-GGCAT Aphanomyces_repetans_AY683889 TTT----GTGCATTAATTAGAGGACTGTTTG--GATCTTGTTTC-GGCAT Aphanomyces_repetans_AY683892 TTT----GTGCATTAATTAGAGGACTGTTTG--GATCTTGTTTC-GGCAT Aphanomyces_invadans_AY082908 TCA---AGTACATTATACAAAGGGCTACATG--ATTCTGATTTC-G--AA Aphanomyces_invadans_AY082907 TCA---AGTACATTATACAAAGGGCTACATG--ATTCTGATTTC-G--AA Aphanomyces_piscicida_AY455773 TCA---AGTACATTATACAAAGGGCTACATG--ATTCTGATTTC-G--AA Aphanomyces_piscicida_AY283643 TCA---AGTACATTATACAAAGGGCTACATG--ATTCTGATTTC-G--AA Aphanomyces_frigidophilus_AY647192 TCA---AGTACATTATACAAAGGGCTACATG--ATTCTGATTTC-G--AA Aphanomyces_astaci_AY310499 TCA---AGTACATTATACAAAGGTCTATATG--ATTCTGATTTC-G--AA Aphanomyces_astaci_AY683894 TCA---AGTACATTATACAAAGGTCTATATG--ATTCTGATTTC-G--AA Aphanomyces_astaci_AY683893 TCA---AGTACATTATACAAAGGTCTATATG--ATTCTGATTTC-G--AA Aphanomyces_stellatus_AY455774 -CG---AGTGCATTATACAAAGGGCTATATG--ATTCGGATCTC-G--AA Aphanomyces_stellatus_AM947029 -CG---AGTGCATTATACAAAGGGCTATATG--ATTCGGATCTC-G--AA Aphanomyces_stellatus_AY283647 -CG---AGTGCATTATACAAAGGGCTATATG--ATTCGGATCTC-G--AA Aphanomyces_euteiches_AY353908 TCA---AGTATATTATATAAAGGACTATGTGTGCTTCTAATTTC----AA Aphanomyces_euteiches_AY353909 TCA---AGTATATTATATAAAGGACTATGTGTGCTTCTAATTTC----AA Aphanomyces_euteiches_AY353910 TCA---AGTATATTATATAAAGGACCATGTGTGCTTCTAATTTC----AA Aphanomyces_euteiches_AY353902 TCA---AGTATATTATATAAAGGACTATGTGTGCTTCTAATTTC----AA Aphanomyces_cladogamus_AY353918 TCA---AGTATATTATATAAAGGACTATATGCTATTCTGATTTC----AA Aphanomyces_cladogamus_AY353913 TCA---AGTATATTATATAAAGGACTATATGCTATTCTGATTTC----AA Aphanomyces_cladogamus_AY353915 TCA---AGTATATTATATAAAGGACTATATGCTATTCTGATTTC----AA Pithium_ultimum_EU253560 CTATGAAGTGTAATGGTTGGAAGGCAGTGAT--TTTCGGATTGC---TGG Aphanomyces_sinensis_NJM_0719_AB531971 GGTCTTGTGTTG-AGAT---GGCACAGATTTTGAAGGAAGGATAAATAGC Aphanomyces_sinensis_NJM_0817AB531972 GGTCTTGTGTTG-AGAT---GGCACAGATTTTGAAGGAAGGATAAATAGC Aphanomyces_sinensis_NJM_0818_AB531973 GGTCTTGTGTTG-AGAT---GGCACAGATTTTGAAGGAAGGATAAATAGC Aphanomyces_sinensis_NJM_0901_AB531974 GGTCTTGTGTTG-AGAT---GGCACAGATTTTGAAGGAAGGATAAATAGC Aphanomyces_sinensis_NJM_0902_AB531975 GGTCTTGTGTTG-AGAT---GGCACAGATTTTGAAGGAAGGATAAATAGC Aphanomyces_laevis_AY683885 TATTTTGTGTTGCGAC----TGCACACTGGCTGAAGGGAGATTAAATTGC Aphanomyces_laevis_AM947028 TATTTTGTGTTGCGAC----TGCACACTGGCTGAAGGGAGATTAAATTGC Aphanomyces_laevis_AY310497 TATTTTGTGTTGCGAC----TGCACACTGGCTGAAGGGAGATTAAATTGC Aphanomyces_repetans_AY683890 TATTTTGTGTTGCGAC----TGCACACTGGCTGAAGGGAGATTAAATTGC Aphanomyces_repetans_AY683891 TATTTTGTGTTGCGAC----TGCACACTGGCTGAAGGGAGATTAAATTGC Aphanomyces_repetans_AY683889 TATTTTGTGTTGCGAC----TGCACACTGGCTGAAGGGAGATTAAATTGC Aphanomyces_repetans_AY683892 TATTTTGTGTTGCGAC----TGCACACTGGCTGAAGGGAGATTAAATTGC Aphanomyces_invadans_AY082908 TGTTTTGTGTTG-ATAT---TACACGACTTTTGAAGGAAGAATAAATTGC Aphanomyces_invadans_AY082907 TGTTTTGTGTTG-ATAT---TACACGACTTTTGAAGGAAGAATAAATTGC Aphanomyces_piscicida_AY455773 TGTTTTGTGTTG-ATAT---TACACGACTTTTGAAGGAAGAATAAATTGC Aphanomyces_piscicida_AY283643 TGTTTTGTGTTG-ATAT---TACACGACTTTTGAAGGAAGAATAAATTGC Aphanomyces_frigidophilus_AY647192 TGTTTTGTGTTG-ATAT---TGCACGACTTTTGAAGGAAGGATAAATTGC Aphanomyces_astaci_AY310499 TGTTTTGTGTTG-AAAT---TGCACAACTTTTGAAAGAAGGCTAAATTGC Aphanomyces_astaci_AY683894 TGTTTTGTGTTG-AAAT---TGCACAACTTTTGAAAGAAGGCTAAATTGC Aphanomyces_astaci_AY683893 TGTTTTGTGTTG-AAAT---TGCACAACTTTTGAAAGAAGGCTAAATTGC Aphanomyces_stellatus_AY455774 TGTTCTGTGTTG-ATAT---TGCACAGCTTTTGAAGGAAGAATAAATTGC Aphanomyces_stellatus_AM947029 TGTTCTGTGTTG-ATAT---TGCACAGCTTTTGAAGGAAGAATAAATTGC Aphanomyces_stellatus_AY283647 TGTTCTGTGTTG-ATAT---TGCACAGCTTTTGAAGGAAGAATAAATTGC Aphanomyces_euteiches_AY353908 TGTTTTATGCGATATA----TGGA------TTGAAAGTAGACTAAATGGC Aphanomyces_euteiches_AY353909 TGTTTTATGCGATATA----TGGA------TTGAAAGTAGACTAAATGGC Aphanomyces_euteiches_AY353910 TGTTTTATGCGATATA----TGGA------TTGAAAGTAGACTAAATGGC Aphanomyces_euteiches_AY353902 TGTTTTATGCGATATA----TGGA------TTGAAAGTAGACTAAATGGC Aphanomyces_cladogamus_AY353918 TGTTTTATGTGAAACA----TGGA------TTGAAAGTAGAATAAATGGC Aphanomyces_cladogamus_AY353913 TGTTTTATGTGAAACA----TGGA------TTGAAAGTAGAATAAATGGC Aphanomyces_cladogamus_AY353915 TGTTTTATGTGAAACA----TGGA------TTGAAAGTAGAATAAATGGC Pithium_ultimum_EU253560 CGGCTTTTGGCG-ACTTCGGTATGAACGTATGGAGACTAGCTCAATTCGT Aphanomyces_sinensis_NJM_0719_AB531971 GGTAGTTTTGCTTGTGTTTCGGCACGGGTG---AACAA----TTATTGCT Aphanomyces_sinensis_NJM_0817AB531972 GGTAGTTTTGCTTGTGTTTCGGCACGGGTG---AACAA----TTATTGCT Aphanomyces_sinensis_NJM_0818_AB531973 GGTAGTTTTGCTTGTGTTTCGGCACGGGTG---AACAA----TTATTGCT Aphanomyces_sinensis_NJM_0901_AB531974 GGTAGTTTTGCTTGTGTTTCGGCACGGGTG---AACAA----TTATTGCT Aphanomyces_sinensis_NJM_0902_AB531975 GGTAGTTTTGCTTGTGTTTCGGCACGGGTG---AACAA----TTATTGCT Aphanomyces_laevis_AY683885 GGTAGTTTTGCTTGTGTTTCGGCACGGGTG---AACATG---T-ATTGCA Aphanomyces_laevis_AM947028 GGTAGTTTTGCTTGTGTTTCGGCACGGGTG---AACATG---T-ATTGCA Aphanomyces_laevis_AY310497 GGTAGTTTTGCTTGTGTTTCGGCACGGGTG---AACATG---T-ATTGCA Aphanomyces_repetans_AY683890 GGTAGTTTTGCTTGTGTTTCGGCACGGGTG---AACATT---TTATTGCA Aphanomyces_repetans_AY683891 GGTAGTTTTGCTTGTGTTTCGGCACGGGTG---AACATT---TTATTGCA Aphanomyces_repetans_AY683889 GGTAGTTTTGCTTGTGTTTCGGCACGGGTG---AACATT---TTATTGCA Aphanomyces_repetans_AY683892 GGTAGTTTTGCTTGTGTTTCGGCACGGGTG---AACATT---TTATTGCA Aphanomyces_invadans_AY082908 GGTAGTTTTGCTTGTGTCTCGGCACAGGTA---AACAAC---ATATTGCT Aphanomyces_invadans_AY082907 GGTAGTTTTGCTTGTGTCTCGGCACAGGTA---AACAAC---ATATTGCT Aphanomyces_piscicida_AY455773 GGTAGTTTTGCTTGTGTCTCGGCACAGGTA---AACAAC---ATATTGCT Aphanomyces_piscicida_AY283643 GGTAGTTTTGCTTGTGTCTCGGCACAGGTA---AACAAC---ATATTGCT Aphanomyces_frigidophilus_AY647192 GGTAGTTTTGCTTGTGTTTCGGCACGGGTG---AACAAC---ATATTGCT Aphanomyces_astaci_AY310499 GGTAGTTTTGCTTGTGTTTCGGCACGGGTG---AACAAC---ATATTGCT Aphanomyces_astaci_AY683894 GGTAGTTTTGCTTGTGTTTCGGCACGGGTG---AACAAC---ATATTGCT Aphanomyces_astaci_AY683893 GGTAGTTT?GCTTGTGTTTCGGCACGGGTG---AACAAC---ATATTGCT Aphanomyces_stellatus_AY455774 GGTAGTTTTGCTTGTGTTTCGGCACAGGTG---AACAAC---ATATTGCT Aphanomyces_stellatus_AM947029 GGTAGTTTTGCTTGTGTTTCGGCACAGGTG---AACAAC---ATATTGCT Aphanomyces_stellatus_AY283647 GGTAGTTTTGCTTGTGTTTCGGCACAGGTG---AACAAC---ATATTGCT Aphanomyces_euteiches_AY353908 GGTAGTTTTGCTTGTGTTTCGGCACGGGTG---AACAA----ATATTGCT Aphanomyces_euteiches_AY353909 GGTAGTTTTGCTTGTGTTTCGGCACGGGTG---AACAA----ATATTGCT Aphanomyces_euteiches_AY353910 GGTAGTTTTGCTTGTGTTTCGGCACGGGTG---AACAA----ATATTGCT Aphanomyces_euteiches_AY353902 GGTAGTTTTGCTTGTGTTTCGGCACGGGTG---AACAA----ATATTGCT Aphanomyces_cladogamus_AY353918 GGTAGTTTTGCTTGTGTTTCGGCACGGGTG---AACAA----ATATTGCT Aphanomyces_cladogamus_AY353913 GGTAGTTTTGCTTGTGTTTCGGCACGGGTG---AACAA----ATATTGCT Aphanomyces_cladogamus_AY353915 GGTAGTTTTGCTTGTGTTTCGGCACGGGTG---AACAA----ATATTGCT Pithium_ultimum_EU253560 GGTATGTTAGGCTTCGGCTCGACAATGTTGCGTAATTGT---GTGTGGTC Aphanomyces_sinensis_NJM_0719_AB531971 TTTTATTTCGTCTGGAG-GGATCTGGCGGTCGAAGAC--AAG-AT--GGG Aphanomyces_sinensis_NJM_0817AB531972 TTTTATTTCGTCTGGAG-GGATCTGGCGGTCGAAGAC--AAG-AT--GGG Aphanomyces_sinensis_NJM_0818_AB531973 TTTTATTTCGTCTGGAG-GGATCTGGCGGTCGAAGAC--AAG-AT--GGG Aphanomyces_sinensis_NJM_0901_AB531974 TTTTATTTCGTCTGGAG-GGATCTGGCGGTCGAAGAC--AAG-AT--GGG Aphanomyces_sinensis_NJM_0902_AB531975 TTTTATTTCGTCTGGAG-GGATCTGGCGGTCGAAGAC--AAG-AT--GGG Aphanomyces_laevis_AY683885 TTTTAATTCGACTGGAGGACTTGG-GTGGTCAAAGAT--GAA-ATACGAG Aphanomyces_laevis_AM947028 TTTTAATTCGACTGGAGGACTTGG-GTGGTCAAAGAT--GAA-ATACGAG Aphanomyces_laevis_AY310497 TTTTAATTCGACTGGAGGACTTGG-GTGGTCAAAGAT--GAA-ATACGAG Aphanomyces_repetans_AY683890 TTTTAATTCSACTGGAGG-GTAGTTGTGGTGGCG?AT--GAA-ATARAGG Aphanomyces_repetans_AY683891 TTTTAATTC?ACTGGAGG-GTAGTTGTGGTGGCGGAT--GAA-ATA?A?G Aphanomyces_repetans_AY683889 TTTTAATTCSACTGGAGGCGTAGTTGTGGTGGCGGAT--GAA-ATAGAGG Aphanomyces_repetans_AY683892 TTTTAATTCGACTGGAGG-GTAGTTGTGGTGGC?GAT--GAA-ATAGAGG Aphanomyces_invadans_AY082908 TTTTATTTCGTCTGGAA-GAGGTTTGTAGTAGAAGGC--AAA-AT-GCGG Aphanomyces_invadans_AY082907 TTTTATTTCGTCTGGAA-GAGGTTTGTAGTAGAAGGC--AAA-AT-GCGG Aphanomyces_piscicida_AY455773 TTTTATTTCGTCTGGAA-GAGGTTTGTAGTAGAAGGC--AAA-AT-GCGG Aphanomyces_piscicida_AY283643 TTTTATTTCGTCTGGAA-GAGGTTTGTAGTAGAAGGC--AAA-AT-GCGG Aphanomyces_frigidophilus_AY647192 TTTTATTTCGTCTGGAA-GAGGTTTGTAGTAGACGGC--AAA-AT-GCGG Aphanomyces_astaci_AY310499 TTTTATGTCGTCTGGAA-GAGGTTTGTAGTTGAAGGC--AGA-AT-GCGG Aphanomyces_astaci_AY683894 TTTTATGTCGTCTG?AA-GAGGTTTGTAGTTGAAGGC--AGA-AT-GCGG Aphanomyces_astaci_AY683893 TTTTATGTCGTCTGGAA-GAGGTTTGTAGTTGAAGGC--AGA-AT-SCGS Aphanomyces_stellatus_AY455774 TTTTATTTCGTCTGGAA-GAGGTTGGTAGTAGAGGGC--AGG-AT-GCGG Aphanomyces_stellatus_AM947029 TTTTATTTCGTCTGGAA-GAGGTTGGTAGTAGAGGGC--AGG-AT-GCGG Aphanomyces_stellatus_AY283647 TTTTATTTCGTCTGGAG-AGGGTTGGTAGTAGAAGGC--AGG-AT-GCGG Aphanomyces_euteiches_AY353908 TTTTATGTCGACTGGAAAGAAGTATGTTGTGTAAGAT--GTA-TTTATGG Aphanomyces_euteiches_AY353909 TTTTATGTCGACTGGAAAGAAGTATGTTGTGTAAGAT--GTA-TTTATGG Aphanomyces_euteiches_AY353910 TTTTATGTCGACTGGAAAGAAGTGTGTTGTGTAAGAT--GTA-TTTATGG Aphanomyces_euteiches_AY353902 TTTTATGTCGACTGGAAAGAAGTATGTTGTGTAAGAT--GTA-TTTATGG Aphanomyces_cladogamus_AY353918 TTTTATATCGACTGGAAAGAAGTGTGTTGTGTAAGAT--GTG-TTAATGG Aphanomyces_cladogamus_AY353913 TTTTATATCGACTGGAAAGAAGTGTGTTGTGTAAGAT--GTG-TTAATGG Aphanomyces_cladogamus_AY353915 TTTTATATCGACTGGAAAGAAGTGTGTTGTGTAAGAT--GTG-TTAATGG Pithium_ultimum_EU253560 TTTGTTTGTGCCTTGAGGTGTACTAGAGGTTGTCGGTTTGAA-CCGTAAG Aphanomyces_sinensis_NJM_0719_AB531971 AAAAGAGTAGA-TATGTGGTCTGGTG-TATTT---GTGATTGCATGGACG Aphanomyces_sinensis_NJM_0817AB531972 AAAAGAGTAGA-TATGTGGTCTGGTG-TATTT---GTGATTGCATGGACG Aphanomyces_sinensis_NJM_0818_AB531973 AAAAGAGTAGA-TATGTGGTCTGGTG-TATTT---GTGATTGCATGGACG Aphanomyces_sinensis_NJM_0901_AB531974 AAAAGAGTAGA-TATGTGGTCTGGTG-TATTT---GTGATTGCATGGACG Aphanomyces_sinensis_NJM_0902_AB531975 AAAAGAGTAGA-TATGTGGTCTGGTG-TATTT---GTGATTGCATGGACG Aphanomyces_laevis_AY683885 CAAGAGCCTT-----GTAGTCTGGTG-TACTCCTAGCTCAAGTCGAGAAG Aphanomyces_laevis_AM947028 CAAGAGCCTT-----GTAGTCTGGTG-TACTCCTAGCTCAAGTCGAGAAG Aphanomyces_laevis_AY310497 CAAGAGCCTT-----GTAGTCTGGTG-TACTCCTAGCTCAAGTCGAGAAG Aphanomyces_repetans_AY683890 CAAGAGCTAA-----ATAGTCTGGTG-CGCTA--GACGCAAGTCGAGAAG Aphanomyces_repetans_AY683891 CAAGAGCTAA-----ATAGTCTGGTG-CGCTA--GACGCAAGTCGA?AAG Aphanomyces_repetans_AY683889 CAAGAGCTAA-----ATAGTCTGGTG-CGCTA--GACSCAAGTCGAGAAG Aphanomyces_repetans_AY683892 CAAGAGCTAA-----ATAGTCTGGTG-CGCTA--GACGCAAGTCGAGAAG Aphanomyces_invadans_AY082908 AGTGAGATAG----TGTAATCTGGTG-TGCTT---GTGTCTATACGGAAG Aphanomyces_invadans_AY082907 AGTGAGATAG----TGTAATCTGGTG-TGCTT---GTGTCTATACGGAAG Aphanomyces_piscicida_AY455773 AGTGAGATAG----TGTAATCTGGTG-TGCTT---GTGTCTATACGGAAG Aphanomyces_piscicida_AY283643 AGTGAGATAG----TGTAATCTGGTG-TGCTT---GTGTCTATACGGAAG Aphanomyces_frigidophilus_AY647192 AGTGAGATAG----TGTAGTCTGGTG-TGCTT---GTGTCTATATGGAAG Aphanomyces_astaci_AY310499 AGTCGGATAG----TATGGTCTGGTG-TGCTT---GTGTCTATATGGAAG Aphanomyces_astaci_AY683894 AGTCGGATAG----TATGGTCTGGTG-TGCTT---GTGTCTATATGGAAG Aphanomyces_astaci_AY683893 AGTC?GATAG----TATGG?CTGGTG-TGCTT---G?GTCTATATGGAAG Aphanomyces_stellatus_AY455774 GTTTTGATAG----TATAGTCTGGTG-TACTA---AGAACTATATGGAAG Aphanomyces_stellatus_AM947029 GTTTTGATAG----TATAGTCTGGTG-TACTA---AGAACTATATGGAAG Aphanomyces_stellatus_AY283647 GTTTTGATAG----TATAGTCTGGTG-TGCTC---GGAACTATATGGAAG Aphanomyces_euteiches_AY353908 AAGAGGAAAGAGCATGTAGTTTGGTA-TATTT---GACAGTATATGGAAG Aphanomyces_euteiches_AY353909 AAGAGGAAAGAGCATGTAGTTTGGTA-TATTT---GACAGTATATGGAAG Aphanomyces_euteiches_AY353910 AAGAGGAAAGAGCATGTAGTTTGGTA-TATTT---GACAGTATATGGAAG Aphanomyces_euteiches_AY353902 AAGAGGAAAGAGCATGTAGTTTGGTA-TATTT---GACAGTATATGGAAG Aphanomyces_cladogamus_AY353918 AAGAGGAGAACGCATGTAGTTTGGTA-TATTT---GACAGTATATGGAAG Aphanomyces_cladogamus_AY353913 AAGAGGAGAACGCATGTAGTTTGGTA-TATTT---GACAGTATATGGAAG Aphanomyces_cladogamus_AY353915 AAGAGGAGAACGCATGTAGTTTGGTA-TATTT---GACAGTATATGGAAG Pithium_ultimum_EU253560 TGATTGTTTAGTAGAGCATTTTCACGATGTATGGAGACGCTGCATTTAGT Aphanomyces_sinensis_NJM_0719_AB531971 TACTTCGGGAAATCATATCC---AA Aphanomyces_sinensis_NJM_0817AB531972 TACTTCGGGAAATCATATCC---AA Aphanomyces_sinensis_NJM_0818_AB531973 TACTTCGGGAAATCATATCC---AA Aphanomyces_sinensis_NJM_0901_AB531974 TACTTCGGGAAATCATATCC---AA Aphanomyces_sinensis_NJM_0902_AB531975 TACTTCGGGAAATCATATCC---AA Aphanomyces_laevis_AY683885 CAAAT-GGGAATAAACATCC---AA Aphanomyces_laevis_AM947028 CAAAT-GGGAATAAACATCC---AA Aphanomyces_laevis_AY310497 CAAAT-GGGAATAAACATCC---AA Aphanomyces_repetans_AY683890 CAAAT-GGGAATAAATATCC---AA Aphanomyces_repetans_AY683891 CAAAT-GGGAATAAATATCC---AA Aphanomyces_repetans_AY683889 CAAAT-GGGAATAAATATCC---AA Aphanomyces_repetans_AY683892 CAAAT-GGGAATAAATATCC---AA Aphanomyces_invadans_AY082908 CAAATTGGGAAACAACATCC---AA Aphanomyces_invadans_AY082907 CAAATTGGGAAACAACATCC---AA Aphanomyces_piscicida_AY455773 CAAATTGGGAAACAACATCC---AA Aphanomyces_piscicida_AY283643 CAAATTGGGAAACAACATCC---AA Aphanomyces_frigidophilus_AY647192 CAAATTGGGAAACAACATCC---AA Aphanomyces_astaci_AY310499 CAAATTGGGAAACAACATCC---AA Aphanomyces_astaci_AY683894 CAAATTGGGAAACAACATCC---AA Aphanomyces_astaci_AY683893 C?AATTGGGA?AC?ACATCC---AA Aphanomyces_stellatus_AY455774 CAAATTGGGAAACAACATCC---AA Aphanomyces_stellatus_AM947029 CAAATTGGGAAACAACATCC---AA Aphanomyces_stellatus_AY283647 CAAATTGGGAAACAACATCC---AA Aphanomyces_euteiches_AY353908 CAAATTGGGAAACCATCTCC---AA Aphanomyces_euteiches_AY353909 CAAATTGGGAAACCATCTCC---AA Aphanomyces_euteiches_AY353910 CAAATTGGGAAACCATCTCC---AA Aphanomyces_euteiches_AY353902 CAAATTGGGAAACCATCTCC---AA Aphanomyces_cladogamus_AY353918 CAAATTGGGAAACAATCTCC---AA Aphanomyces_cladogamus_AY353913 CAAATTGGGAAACAATCTCC---AA Aphanomyces_cladogamus_AY353915 CAAATTGGGAAACAATCTCC---AA Pithium_ultimum_EU253560 TGCGTAGAGAGATTGAT-------- ; END; BEGIN TREES; Title Takuma_TB; LINK Taxa = Taxa; TRANSLATE 1 Aphanomyces_sinensis_NJM_0719_AB531971, 2 Aphanomyces_sinensis_NJM_0817AB531972, 3 Aphanomyces_sinensis_NJM_0818_AB531973, 4 Aphanomyces_sinensis_NJM_0901_AB531974, 5 Aphanomyces_sinensis_NJM_0902_AB531975, 6 Aphanomyces_laevis_AY683885, 7 Aphanomyces_laevis_AM947028, 8 Aphanomyces_laevis_AY310497, 9 Aphanomyces_repetans_AY683890, 10 Aphanomyces_repetans_AY683891, 11 Aphanomyces_repetans_AY683889, 12 Aphanomyces_repetans_AY683892, 13 Aphanomyces_invadans_AY082908, 14 Aphanomyces_invadans_AY082907, 15 Aphanomyces_piscicida_AY455773, 16 Aphanomyces_piscicida_AY283643, 17 Aphanomyces_frigidophilus_AY647192, 18 Aphanomyces_astaci_AY310499, 19 Aphanomyces_astaci_AY683894, 20 Aphanomyces_astaci_AY683893, 21 Aphanomyces_stellatus_AY455774, 22 Aphanomyces_stellatus_AM947029, 23 Aphanomyces_stellatus_AY283647, 24 Aphanomyces_euteiches_AY353908, 25 Aphanomyces_euteiches_AY353909, 26 Aphanomyces_euteiches_AY353910, 27 Aphanomyces_euteiches_AY353902, 28 Aphanomyces_cladogamus_AY353918, 29 Aphanomyces_cladogamus_AY353913, 30 Aphanomyces_cladogamus_AY353915, 31 Pithium_ultimum_EU253560; TREE PAUP_1 = ((((1:0.0,2:0.0,3:0.0,4:0.0,5:0.0):0.260499,(((((13:0.0,14:0.0,15:0.0,16:0.0):0.021068,17:0.019535):0.012902,(18:0.0,19:0.0,20:0.0):0.035811):0.020516,((21:0.001638,22:0.0):0.018242,23:0.02498):0.052408):0.023071,(((24:0.0,25:0.0,27:0.001692):0.001545,26:0.001832):0.047814,(28:0.0,29:0.0,30:0.0):0.02656):0.193195):0.032048):0.0,((6:0.0,7:0.0,8:0.0):0.053783,(9:0.0,(10:0.0,11:0.0):0.00332,12:0.0):0.042088):0.301697):0.334889,31:2.305955):0.0; END;