#NEXUS [written Fri Jul 06 12:27:22 EDT 2012 by Mesquite version 2.75 (build 564) at Robert-Baratheons-MacBook.local/10.0.1.136] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=32; TAXLABELS Theropoda Prosauropoda Vulcanodon Barapasaurus Omeisaurus Shunosaurus Patagosaurus Mamenchisaurus Apatosaurus Barosaurus Brachiosaurus_altithorax Giraffatitan_brancai Camarasaurus Dicraeosaurus Diplodocus Haplocanthosaurus Amargasaurus Euhelopus Jobaria Malawisaurus Nigersaurus Limaysaurus Rebbachisaurus Alamosaurus Nemegtosaurus Opisthocoelicaudia Rapetosaurus Saltasaurus Isisaurus Losillasaurus Suuwassea SMA_0009 ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=334; FORMAT DATATYPE = STANDARD GAP = - MISSING = ? SYMBOLS = " 0 1 2 3 4 5 6"; MATRIX Theropoda 000000000000000(0 1)00000000000000000(0 1)0000000000000000?0000000000000000000010000000000000000000000000000000000000010000000000001000000000000000000000000000000000000001000000000000000000000000000000000000000000001??00000000000000000001(0 1)0001?00000000000100000000000000000000000000000000000000000000000000000000000000??0000000000000000000000 Prosauropoda 00000000000000000(0 1)0(0 1)0000000(0 1)000000(0 1)000000000000000?000000000001000000001000000000000000000000010000000001000001000000000000?01000000?000000000000000000000000000001000000000000000000000000000000000000000000000??0000000000000000000100001?00000000000001000000000?0000000000000000000(0 1)000000000000000000000000000000000000000000000000000000 Vulcanodon ???????????????????????????????????????????????????????????????????????????????????????????????????????????1???????????????????????????????????????????????1??0??0???0?00001?????10100????1??????????????00?2??0??????????????????100100?111100100????10???1???????0??1??000100010100101011101???10100??0000101000010?1000110100000?1001000??0 Barapasaurus ?????????????????????????????????????????????????????????????????????????????????????????????????1?0??????10000?0010?000??011?02000100?01?1100001020000001011001?0?0?0?0?0?????????100????00?0000?????0?2?00??01??0000??00?0????0?1?010?11?110?100???????????????01?0110?010100010?0011?112101100?0?10111?1???1?1????010????????????1??11?0000 Omeisaurus 01010(1 2)00000110001012?000??0001100110111011001100020111???10??10100101?0?00000?10000?1????10111110111?10160130?01010?000013111202001100?01111002110000000000210?01?10100(0 1)000100000111000000?0000??0100??0200121010?000?00001000000010010011001001(1 2)02100110001011100100010101010001010011011210100010110101??00010101111111012110111011111110000 Shunosaurus 001100000000100010020000000001??0110101011001100020011?01100011000100001?0000?10000?1?00?10011111110?0014010001100100000120?01?00?10?000100?0000100000000001000110111000000100000111000000?00000000?0001202111000000000000100000001001001100100110010010000111010010001010101000?01001101121010001?1101???000010?001111?101201011101?111110000 Patagosaurus 11???(1 2)00000110?01??????????????????????????????????1??????????????????????????100????????1???11?0112?001??10010?001000001?1111020011000010110021102000000102??01???0???000?1?????101??0000?0000???1?0?0??00???011?0?0???0010????0010010?1101100100????????????????1001101010100010100110112101000101001??????????????010??1???????????????0100 Mamenchisaurus 1101?(1 2)??????111010020000??0101000110?110?1?01????2011?10?100?1011010?0?10?0???100101100111?111110111010160100?0101110011130?1201?001?0??1?11001110?1010000021?(0 1)11?101102200100000111000000?000000?10000?20012111??0?????00??0???0?1?010?11?110?1101101?1?00?01????10001010??100010100110112101100?11?01???1000111??11?1010?2?10111?11??1??0100 Apatosaurus 30102211011012011112?111100101110121121011111101110011110210????10102001000101???????????11?230?2212???161132200101100221521120201010010111110(3 4)211000000010211121021110100011111012111110000000132110001201111011100110001101?00001001001100100110211111000101110110011111101000001011111121011001111011110111111011111111121111(0 1)1121111110000 Barosaurus ??????????????????????????????????????????????????????????????????????????????????????????????????????????1?2200?11210121?11111101010??01?1?1?311100000??102?????0211101011?1111013111110?10010??2110?0?2?11??1?11????00?01??????0?0???0???????????????????????????0???11110100010101111?1???1???111???1????111?????????11????1???????????0000 Brachiosaurus_altithorax ??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????2112020001????1011102111?2(0 1)100011211101??0??0000?1001101?10?0?????????????11??????22??????????00?0????001001???????????????????????????1111110?????????????111112201000??????????????????????????????????????????101 Giraffatitan_brancai 1101121010011111101?10001101011001201110111111000201111001001110001010111000001012111111211111011112000140132200011100001321120201010?001011?1211002011001021110?010100000010011001100000000100???10111??0202201110101100010200000100100110110012011111201111101111111111011101010110111102211000111101111111111100111101012?101110?1?111?0110 Camarasaurus 110112101001101110121000110101100121111011101100020111101100111000101001000000100211111111111111011201013013120000100031132112020001100011110021101201000002111110101000000100110111000000000000001001?11020210111010100011000000010010011011001(1 2)011111101010111011001111011100010110111112101100111101111011111100111101012110111021111110000 Dicraeosaurus 3010?21101?????????2??101?0011101??1121011?????????0????1??0?1010101210001010?110????0???1?123??2212?1003?110(1 2)00(0 1)01(0 1)01321300120211110(0 2)001010001(1 2)1(0 1)0000000112110210?2111(0 1)00011(0 1)110131001100000000(2 3)111010?201111?11??0010000?0????001001001101100110???????????????1100011111010000010111111210110011110111101111111??11111?1?11?1??????11??0000 Diplodocus 3010221101101201111211111001011101211210111111011100111102101101101020010001011102011001?11123002212110061132200011(1 2)10321521121201010010111110(3 4)(1 2)101000000102111210211101011111110131111100100101321100012011111111000100001010000010010011011001?0???????????????110011111101000001011111121011001111011110111111?0111111112111111121?11110010 Haplocanthosaurus ?????????????????????????????????????????????????????????????????????????????????????????????????????????01(0 1)11000010000011211101001110001111013(1 2)110100001002111110?010000001001101110000100000????1?010??02???011100010?00?02?00?????????????????????????????????110011110101000101101111121011001????????????????????????????????????????0000 Amargasaurus ??????????????????????001?0?11101221021111????????????????????11011121001101?0??????????????????????????4111??0?10100131150?1?020111???01?0?101?10?00001?112???2???2?0???0?????????????????0??????????0?????11??1??0?1??????????0010010?1100100??0????????????????111111?????????????11111?101?001?1??????????????????????????????????????0000 Euhelopus 11010100000111?01?12?0??1?0?01???1??1?1?????110002011110???0?1????????????????10021??????101?111011201016?101?1101110012111????1?1?1???111111???10?111010003?1??1??0??????????????????????????????101?1???????01100010??00?0????1?1001011????????????????????????110121??01110001?110???1??11?100?111011?1011111??0?111010121??11???11111?0100 Jobaria 11010?101001101110121000100101100110111011?01100?20?1????1?0?10??010??010?00??000????0????00111?0110000?3?13??0000100000120?????00?1????1?111???1??000?0?1021???10101000?00?00110??10000?00000000?100?011??021011?0101??0000????0?1?010?11?11001?00111?1?001011101100111?01???0010?1?11?11?10110011?101?1101??111?011110??1111????????????0000 Malawisaurus ?1?11?????00?0??????1??????????10????????????????20???100??1??10011?10020??0??100??????1?1?1?????1120101??101010?111000005???0?2?1011?00111?0?1??1?11101??131??????01??200000011101100001010100??01010??0120????????????00?02??11?1?010?1110000110??1???111?1????????????????10111110??????11?????1??11?1?0?????????????????????1????1?11?1??? Nigersaurus 30?0????00??12011?0???001?1?001?????????????1????20???????????0??0102?01??01??10?200?????1?022012212101???1???00?01???00??2???????????????????????????????????????????????????????????????????????110?0???????11??020??00????????????????????????????????????????????????????????????00??????????????????????????????????????????????????????? Limaysaurus ?????????????2????0???000?1?01100???1??????0????120????????0??21001020?110011???????????????????2212??1???13??00101001001312?002011100?01????012?0?000???11??????01210000001001100010011?00000??(1 2)2110????02?111111020???01102??1101?000?11011001?0?????00??1??????1??01??0101000101101111?2101?001?11????1?111??????10001?1211????????????0??? Rebbachisaurus ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????0??2??002?11?????1?111?32?0?0000?111???????????????????????????????????????????????????11??0201????????????1??0?????????????????????????????????????????01??1??????????????????????????????????????????????????????0??? Alamosaurus ?????????????????????????????????????????????????????????????????????????????????????????????2????12???0??11201?001???00??1??0020101???1??110?11?0?111???113?????000231200000011001100011111101?????0?010121??01101211?1110021?11011111101010011213?1112111112??1?111211?????00111110?01111?1?1?1???11??0?1???????????????????????????????0??? Nemegtosaurus 2001?21?0??0?2?110111000110101010221?11010101110021?111?210111100110111200100?10111??000?111120122121001?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Opisthocoelicaudia ???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????1?41210?1110113001011101211?111111?03110?1?00221300010011011100101110100030????110120210110001111110121111111111101010111213?1112111112??1111?2111010010111110111112211111?11111012011111111111101012110111021011110??? Rapetosaurus 201020????1012011101?000?000010100211?1010?0????021???1?21011?20011021021?10??00121??0?0??1112012212000?6?12??10?11??000151?1112?101???00?000021?101111?11131?1001101??2000000111???0001?101100???101?01?12021?1111010??100020?11?1?011?0100000120??11?200110????1111111?0100?0111?101111?10111010110????10?????????100?1?1210????????????1010 Saltasaurus ??????????????????????00???001??0??11?????????????????????????1?0110111210??0???????????????????2?????????111?00001200001?1210?101111100111?111110?111111103110?11?0???210?0001111110011?111101?001?????0120??01111010??11012??11111111?0111011111???????????????111121110110001111101111122111111?11110?20?????????????1?????????????????1000 Isisaurus ??????????????????????????????????????????????????????????????????????????????????????????????????????????11??10001000001?1?1?0201011?001111100110?0110?11?3110????0???200000011000100001011100???1???1?0120??01??1010??10??????111101111101011??????????????????11112111011000111111??????????????????????????????????????????????????????010 Losillasaurus ?????????????????????????????????????????????????????????????????????0???1????????????????????????????????110100???10?00??1???0??11100?01???0??110?2000?1?1???0????0???1?0?0000000310?0?????????????????????????????????????00000??00100????????2?????1????????????000???010???1?????????????????????????????????????????????????????????????? Suuwassea 3?10??????????????????????000?101???1210?1???????10???????????111010?00110?1??????????????????????121?00?1121(1 2)0010?10121??221??????1???01????0???????????????????0?????100?0???????1???100000?0?11?1000???(0 1)???01110001100010????011001001?????????????????????????????????????????????????????????111???110???????0?1111111?1?111???10111?0??? SMA_0009 ??????????????????????????????????????????????????????????????????????????????????????????????????????????12111?0?1100(0 1)???0????00001?0?010?11?2?1??00100000????(0 1)?0??10000001?011??110?000000100???10011?????21?1??0(0 1)01??0010????00???1001???100110(0 1 2)11110001???????10??111?????????????1???2201??01????1?1?01?1??????1??01??2?1?????????????101 ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS; TYPESET * UNTITLED = unord: 1 - 5 7 - 13 15 - 88 90 - 92 94 - 283 285 - 323 325 - 334, ord: 6 14 89 93 284 324; END; BEGIN TREES; Title Imported_trees; LINK Taxa = Taxa; TRANSLATE 1 Theropoda, 2 Prosauropoda, 3 Vulcanodon, 4 Barapasaurus, 5 Omeisaurus, 6 Shunosaurus, 7 Patagosaurus, 8 Mamenchisaurus, 9 Apatosaurus, 10 Barosaurus, 11 Brachiosaurus_altithorax, 12 Giraffatitan_brancai, 13 Camarasaurus, 14 Dicraeosaurus, 15 Diplodocus, 16 Haplocanthosaurus, 17 Amargasaurus, 18 Euhelopus, 19 Jobaria, 20 Malawisaurus, 21 Nigersaurus, 22 Limaysaurus, 23 Rebbachisaurus, 24 Alamosaurus, 25 Nemegtosaurus, 26 Opisthocoelicaudia, 27 Rapetosaurus, 28 Saltasaurus, 29 Isisaurus, 30 Losillasaurus, 31 Suuwassea, 32 SMA_0009; TREE Imported_tree_0 = (1,(2,(3,(6,(4,5,7,8,30,(16,19,((31,(9,(10,15)),(14,17)),(21,22,23)),(13,(11,12,32,(18,(20,(24,25,27,29,(26,28)))))))))))); END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1 - 334; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1341592043037; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 615193181267405630; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 7428441202364854869; mqVersion 275; checksumv 0 3 3315859604 null getNumChars 334 numChars 334 getNumTaxa 32 numTaxa 32 short true bits 127 states 127 sumSquaresStatesOnly 54738.0 sumSquares 54738.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState true false 172; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 467; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; endTell; end;