#NEXUS [written Fri Feb 24 17:48:33 CST 2017 by Mesquite version 3.2 (build 801) at pl-thar-mini16.plp.iastate.edu/10.24.54.243] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=26; TAXLABELS Ceratocystis_obpyriformis_EU244937obpyri23806 Ceratocystis_zombamontana_EU244934zombamontan Ceratocystis_pirilliformis_HQ236446pirCMW29822 Ceratocystis_pirilliformis_HQ236445pirCMW29825 Ceratocystis_polyconidia_AY528983Cpir118128 Ceratocystis_polyconidia_EU244940polyconidia Ceratocystis_atrox_EF070403atrox19385 Ceratocystis_atrox_EF070404atrox19387 Ceratocystis_ficicola_C1355FicusJapan Ceratocystis_ficicola_C1393FicusJapan Ceratocystis_cercfabiensis_KP727620cercfabien Ceratocystis_cercfabiensis_KP727643cercfabiens Ceratocystis_cercfabiensis_C3302EucGuondong Ceratocystis_fimbriata_spY_C3372EucKunmimg Ceratocystis_cercfabiensis_C3355EucHainan Ceratocystis_uchidae_C1714TaroHawaii Ceratocystis_uchidae_C1715ColocaHawaii2 Ceratocystis_uchidae_C1931XanthoFIJI Ceratocystis_corymbicola_HQ236453corymbicola Ceratocystis_corymbicola_HQ236455corymbicola Ceratocystis_polychroma_C2240Cpolychroma Ceratocystis_fimbriata_spX_C2239CeratocystisSP Ceratocystis_collisensis_KP727635collisensis Ceratocystis_larium_EU881900larium Ceratocystis_albofundus_C1048Calbofundus Ceratocystis_variospora_C1963CvarioPrunus ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=773; FORMAT DATATYPE = DNA GAP = - MISSING = N; MATRIX Ceratocystis_obpyriformis_EU244937obpyri23806 NNNNNNNNNNCCATTGAGAAGTTTGAGAATAAGTCTCCCCTATTTCCCCTCATTGTTGTGGACAGCATGCAATTGGTGTTGCTGAGCTCTACTTTTT-GATGACGCTCTACCCTCTGTTCTTCTGGCCACCGAAGGGCGGGGTAACGTCACTGAAGTGGGGCTGCTATTTTT------TCTAAATGGCGTGCATGCTGTCTCCACTTTCGTGCTTCAATTCAATTCATGTACTGACCTT--TTCCACAGGAGGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACTATCGACATTGCCCTGTGGAAGTTCGAGACCCCCAAGTACTACGTCACTGTCATTGGTAAGCCTT---CTT-ATCTC---TTATTATTTTT--CATTATTAGATACTAACAGCTCTAAAA-CAGATGCCCCTGGTCACAGAGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCTGACTGCGCTATTCTGATCATTGCTGCCGGTACCGGTGAGTTCGAGGCCGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTGGCTTTCACCCTCGGTGTCAAGCAGCTGATTGTTGCCATCAACAAGATGGACACCGCCAAGTGGTCTGAGGCTCGTTACAACGAGATTATCAAGGAGACCTCCACCTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTTGCCTTTGTCCCCATCTCTGGCTTCAACGGC Ceratocystis_zombamontana_EU244934zombamontan NNNNNNNNNNCCATTGAGAAGTTTGAGAATAAGTCTCCCCTATTTACCCTCATTGTTGTGGACAGCATGCAATTGGTGTTGCTGAGCTCTACTTTTT-GATGACGCTCTACCCTCTGTTCTTCTGGCCACCGAAGGGCGGGGTAACGTCACTGAAGTGGGGCTGCTATTTTTTT---CTCTAAATGGCGTGCATGCTGTCTCCACTTTCGTGCTTCAATTCAATTCATGTACTGACCTT--TTCCACAGGAGGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACTATCGACATTGCCCTGTGGAAGTTCGAGACCCCCAAGTACTACGTCACTGTCATTGGTAAGCCTT---ATC-TCTTC---ATATTATTTTT--CATTATTAGATACTAACAGCTCTAAAA-CAGATGCCCCTGGTCACAGAGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCTGACTGCGCTATTCTGATCATTGCTGCCGGTACCGGTGAGTTCGAGGCCGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTGGCTTTCACCCTCGGTGTCAAGCAGCTGATTGTTGCCATCAACAAGATGGACACCGCCAAGTGGTCTGAGGCTCGTTTCAACGAGATTATCAAGGAGACCTCCACCTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTTGCCTTTGTCCCCATCTCTGGCTTCAACGGC Ceratocystis_pirilliformis_HQ236446pirCMW29822 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTACCCTCATTGTTGTGGACAGCATGCAATTGGTGTTGCTGAGCTCTACTTTTT-GATGACGCTCTACCCTCTGTTCTTCTGGCCACCGAAGGGCGGGGTAACGTCACTGAAGTGGGGCTGCTATTTTTTT---CTCTAAATGGCGTGCATGCTGTCTCCACTTTCGTGCTTCAATTCAATTCATGTACTGACCTT--TTCCACAGGAGGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACTATCGACATTGCCCTGTGGAAGTTCGAGACCCCCAAGTACTACGTCACTGTCATTGGTAAGCCTT---ATC-TCTTC---ATATTATTTTT--CATTATTAGATACTAACAGCTCTAAAA-CAGATGCCCCTGGTCACAGAGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCTGACTGCGCTATTCTGATCATTGCTGCCGGTACCGGTGAGTTCGAGGCCGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTGGCTTTCACCCTCGGTGTCAAGCAGCTGATTGTTGCCATCAACAAGATGGACACCGCCAAGTGGTCTGAGGCTCGTTTCAACGAGATTATCAAGGAGACCTCCACCTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTTGCCTTTGTCCCCATCTCTGNNNNNNNNNNN Ceratocystis_pirilliformis_HQ236445pirCMW29825 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTACCCTCATTGTTGTGGACAGCATGCAATTGGTGTTGCTGAGCTCTACTTTTT-GATGACGCTCTACCCTCTGTTCTTCTGGCCACCGAAGGGCGGGGTAACGTCACTGAAGTGGGGCTGCTATTTTTTT---CTCTAAATGGCGTGCATGCTGTCTCCACTTTCGTGCTTCAATTCAATTCATGTACTGACCTT--TTCCACAGGAGGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACTATCGACATTGCCCTGTGGAAGTTCGAGACCCCCAAGTACTACGTCACTGTCATTGGTAAGCCTT---ATC-TCTTC---ATATTATTTTT--CATTATTAGATACTAACAGCTCTAAAA-CAGATGCCCCTGGTCACAGAGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCTGACTGCGCTATTCTGATCATTGCTGCCGGTACCGGTGAGTTCGAGGCCGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTGGCTTTCACCCTCGGTGTCAAGCAGCTGATTGTTGCCATCAACAAGATGGACACCGCCAAGTGGTCTGAGGCTCGTTTCAACGAGATTATCAAGGAGACCTCCACCTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTTGCCTTTGTCCCCATCTCTGGTNNNNNNNNN Ceratocystis_polyconidia_AY528983Cpir118128 NNNNNNNNNNCCATTGAGAAGTTTGAGAATAAGTCTCCCCTATTTACCCTCATTGTTGTGGACAGCATGCAATTGGTGTTGCTGAGCTCTACTTTTT-GATGACGCTCTACCCTCTGTTCTTCTGGCCACCGAAGGGCGGGGTAACGTCACTGAAGTGGGGCTGCTATTTTTTT---CTCTAAATGGCGTGCATGCTGTCTCCACTTTCGTGCTTCAATTCAATTCATGTACTGACCTT--TTCCACAGGAGGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACTATCGACATTGCCCTGTGGAAGTTCGAGACCCCCAAGTACTACGTCACTGTCATTGGTAAGCCTT---ATC-TCTTC---ATATTACTTTT--CATTATTAGATACTAACAGCTCTAAAA-CAGATGCCCCTGGTCACAGAGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCTGACTGCGCTATTCTGATCATTGCTGCCGGTACCGGTGAGTTCGAGGCCGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTGGCTTTCACCCTCGGTGTCAAGCAGCTGATTGTTGCCATCAACAAGATGGACACCGCCAAGTGGTCTGAGGCTCGTTTCAACGAGATTATCAAGGAGACCTCCACCTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTTGCCTTTGTCCCCATCTCTGGCTTCAACGGC Ceratocystis_polyconidia_EU244940polyconidia NNNNNNNNNNCCATNGAGAAGTTTGAGAATAAGTCTCCCCTATTTACCCTCATTGTTGTGGACAGCATGCAATTGGTGTTGCTGAGCTCTACTTTTT-GATGACGCTCTACCCTCTGTTCTTCTGGCCACCGAAGGGCGGGGTAACGTCACTGAAGTGGGGCTGCTATTTTTTT---CTCTAAATGGCGTGCATGCTGTCTCCACTTTCGTGCTTCAATTCAATTCATGTACTGACCTT--TTCCACAGGAGGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACTATCGACATTGCCCTGTGGAAGTTCGAGACCCCCAAGTACTACGTCACTGTCATTGGTAAGCCTT---ATC-TCTTC---ATATTACTTTT--CATTATTAGATACTAACAGCTCTAAAA-CAGATGCCCCTGGTCACAGAGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCTGACTGCGCTATTCTGATCATTGCTGCCGGTACCGGTGAGTTCGAGGCCGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTGGCTTTCACCCTCGGTGTCAAGCAGCTGATTGTTGCCATCAACAAGATGGACACCGCCAAGTGGTCTGAGGCTCGTTTCAACGAGATTATCAAGGAGACCTCCACCTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTTGCCTTTGTCCCCATCTCTGGCTTCAACGGC Ceratocystis_atrox_EF070403atrox19385 NNNNNNNNNNCCATTGAGAAGTTCGAGAATAAGTCTCCCCTATTTCCCCTCATTGTTGTGGACAGCATGCAATTGGTGTTGCTGAGCTCTACTTTTT-GATGACGCTTTACCCTCTG---TTCTGGCCATCCAAGGGCGGGGTAACGTCACTGAAGTGGGGCTGCTATTTTTTTTT-CTCTAAATGGCGTGCATGCTGTCTCCACTTTCGTGCTTCAATTCAATTCATGTACTGACCTTCTTTGCACAGGAGGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACTATCGACATTGCCCTGTGGAAGTTCGAGACCCCCAAGTACTACGTCACTGTCATTGGTAAGCCTT---ATC-TCTTC---ACATTATTTTT--CATTATTAGATGCTAACAGTTCTAAAA-CAGATGCCCCTGGTCACAGAGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCTGACTGCGCTATTCTGATCATTGCTGCCGGTACCGGTGAATTCGAGGCCGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTGGCTTTCACCCTCGGTGTCAAGCAGCTGATTGTTGCCATCAACAAGATGGACACCGCCAAGTGGGCTGAGGCTCGTTTCAACGAGATCATCAAGGGAGACTCCACCTTCATTAAGAAGGTCGGTTACAACCCCAAGACCGTTGCCTTTGTCCCCATCTCTGGCTTCAACGGC Ceratocystis_atrox_EF070404atrox19387 NNNNNNNNNNCCATTGAGAAGTTCGAGAATAAGTCTCCCCTACTTCCCCTCATTGTTGTGGACAGCATGCAATTGGTGTTGCTGAGCTCTACTTTTT-GATGACGCTTTACCCTCTG---TTCTGGCCATCCAAGGGCGGGGTAACGTCACTGAAGTGGGGCTGCTATTTTTTTTT-CTCTAAATGGCGTGCATGCTGTCTCCACTTTCGTGCTTCAATTCAATTCATGTACTGACCTTCTTTGCACAGGAGGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACTATCGACATTGCCCTGTGGAAGTTCGAGACCCCCAAGTACTACGTCACTGTCATTGGTAAGCCTT---ATC-TCTTC---ACATTATTTTT--CATTATTAGATGCTAACAGTTCTAAAA-CAGATGCCCCTGGTCACAGAGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCTGACTGCGCTATTCTGATCATTGCTGCCGGTACCGGTGAATTCGAGGCCGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTGGCTTTCACCCTCGGTGTCAAGCAGCTGATTGTTGCCATCAACAAGATGGACACCGCCAAGTGGGCTGAGGCTCGTTTCAACGAGATCATCAAGGGAGACTCCACCTTCATTAAGAAGGTCGGTTACAACCCCAAGACCGTTGCCTTTGTCCCCATCTCTGGCTTCAACGGC Ceratocystis_ficicola_C1355FicusJapan GACAAGCGTACCATTGAGAAGTTCGAGAATAAGTCTCCCCTATTTCCCCTCATTGTTGTGGACAGCATGCAATTGGTGATGCTGAGCTCTACTTTTT-GATGACGCTTTAC--TCTGTTCTTCTGGCCATCGAAGGGCGGGGTAACGTCACTGAAGTGGGGCTGCCATTT-------CTCTAAATGGCGTGCATGCTGTCTCCACTTTCGTGCTTCAATTCAATTCATGTACTGACCTTCTTTGCACAGGAGGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACTATCGACATTGCCCTGTGGAAGTTCGAGACCCCCAAGTACTACGTCACTGTCATTGGTAAGCCTT---ATC-TATTC---ACACTATTTTG--CATTGTTAGATGCTAACAGTTCTAAAA-CAGATGCCCCTGGTCACAGAGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCTGACTGCGCTATTCTGATCATTGCTGCCGGTACCGGTGAGTTCGAGGCCGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTGGCTTTCACCCTCGGTGTCAAGCAGCTGATTGTTGCCATCAACAAGATGGACACCGCCAAGTGGGCTGAGGCTCGTTACAACGAGATCATCAAGGAGACCTCCACCTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTTGCCTTTGTCCCCATCTCTGGTTTCAACGGT Ceratocystis_ficicola_C1393FicusJapan GACAAGCGTACCATTGAGAAGTTCGAGAATAAGTCTCCCCTATTTCCCCTCATTGTTGTGGACAGCATGCAATTGGTGATGCTGAGCTCTACTTTTT-GATGACGCTTTAC--TCTGTTCTTCTGGCCATCGAAGGGCGGGGTAACGTCACTGAAGTGGGGCTGCCATTT-------CTCTAAATGGCGTGCATGCTGTCTCCACTTTCGTGCTTCAATTCAATTCATGTACTGACCTTCTTTGCACAGGAGGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACTATCGACATTGCCCTGTGGAAGTTCGAGACCCCCAAGTACTACGTCACTGTCATTGGTAAGCCTT---ATC-TATTC---ACACTATTTTG--CATTGTTAGATGCTAACAGTTCTAAAA-CAGATGCCCCTGGTCACAGAGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCTGACTGCGCTATTCTGATCATTGCTGCCGGTACCGGTGAGTTCGAGGCCGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTGGCTTTCACCCTCGGTGTCAAGCAGCTGATTGTTGCCATCAACAAGATGGACACCGCCAAGTGGGCTGAGGCTCGTTACAACGAGATCATCAAGGAGACCTCCACCTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTTGCCTTTGTCCCCATCTCTGGTTTCAACGGT Ceratocystis_cercfabiensis_KP727620cercfabien GACAAGCGTACCATTGAGAAGTTCGAGAATAAGTCTCCCCTATTTCCCCTCATTGTTGTGGACAGCATGCAATTGGTGTTGCTGAGCTCTACTTTTT-GATGACGCTTTACCCTCTG---TTCTGGCCATCCAAGGGCGGGGTAACGTCACTGAAGTGGGGCTGCTATTTTTTTT--CTCTAAATGGCGTGCATGCTGTCTCCACTTTCGTGCTTCAATTCAATTCATGTACTGACCTTCTTTGCACAGGAGGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACTATCGACATTGCCCTGTGGAAGTTCGAGACCCCCAAGTACTACGTCACTGTCATTGGTAAGCCTT---ATC-TCTTC---ACATTATTTTT--CATTATTAGATGCTAACAGTTCTAAAA-CAGATGCCCCTGGTCACAGAGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCTGACTGCGCTATTCTGATCATTGCTGCCGGTACCGGTGAGTTCGAGGCCGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTGGCTTTCACCCTCGGTGTCAAGCAGCTGATTGTTGCCATCAACAAGATGGACACTGCCAAGTGGGCTGAGGCTCGTTACAACGAGATTATCAAGGAGACCTCCACCTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTTGCCTTTGTCCCCATCTCTGGCTTCAACNNN Ceratocystis_cercfabiensis_KP727643cercfabiens GACAAGCGTACCATTGAGAAGTTCGAGAATAAGTCTCCCCTATTTCCCCTCATTGTTGTGGACAGCATGCAATTGGTGTTGCTGAGCTCTACTTTTT-GATGACGCTTTACCCTCTG---TTCTGGCCATCCAAGGGCGGGGTAACGTCACTGAAGTGGGGCTGCTATTTTTTTT--CTCTAAATGGCGTGCATGCTGTCTCCACTTTCGTGCTTCAATTCAATTCATGTACTGACCTTCTTTGCACAGGAGGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACTATCGACATTGCCCTGTGGAAGTTCGAGACCCCCAAGTACTACGTCACTGTCATTGGTAAGCCTT---ATC-TCTTC---ACATTATTTTT--CATTATTAGATGCTAACAGTTCTAAAA-CAGATGCCCCTGGTCACAGAGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCTGACTGCGCTATTCTGATCATTGCTGCCGGTACCGGTGAGTTCGAGGCCGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTGGCTTTCACCCTCGGTGTCAAGCAGCTGATTGTTGCCATCAACAAGATGGACACTGCCAAGTGGGCTGAGGCTCGTTACAACGAGATTATCAAGGAGACCTCCACCTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTTGCCTTTGTCCCCATCTCTGGCTTCAACNNN Ceratocystis_cercfabiensis_C3302EucGuondong GACAAGCGTACCATTGAGAAGTTCGAGAATAAGTCTCCCCTATTTCCCCTCATTGTTGTGGACAGCATGCAATTGGTGTTGCTGAGCTCTACTTTTT-GATGACGCTTTACCCTCTG---TTCTGGCCATCCAAGGGCGGGGTAACGTCACTGAAGTGGGGCTGCTATTTTTTTT--CTCTAAATGGCGTGCATGCTGTCTCCACTTTCGTGCTTCAATTCAATTCATGTACTGACCTTCTTTGCACAGGAGGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACTATCGACATTGCCCTGTGGAAGTTCGAGACCCCCAAGTACTACGTCACTGTCATTGGTAAGCCTT---ATC-TCTTC---ACATTATTTTT--CATTATTAGATGCTAACAGTTCTAAAA-CAGATGCCCCTGGTCACAGAGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCTGACTGCGCTATTCTGATCATTGCTGCCGGTACCGGTGAGTTCGAGGCCGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTGGCTTTCACCCTCGGTGTCAAGCAGCTGATTGTTGCCATCAACAAGATGGACACTGCCAAGTGGGCTGAGGCTCGTTACAACGAGATTATCAAGGAGACCTCCACCTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTTGCCTTTGTCCCCATCTCTGGTTTCAACGGT Ceratocystis_fimbriata_spY_C3372EucKunmimg GACAAGCGTACCATTGAGAAGTTCGAGAATAAGTCTCCCCTATTTCCCCTCATTGTTGTGGACAGCATGCAATTGGTGTTGCTGAGCTCTACTTTTT-GATGACGCTTTACCCTCTG---TTCTGGCCATCCAAGGGCGGGGTAACGTCACTGAAGTGGGGCTGCTATTTTTTTT--CTCTAAATGGCGTGCATGCTGTCTCCACTTTCGTGCTTCAATTCAATTCATGTACTGACCTTCTTTGCACAGGAGGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACTATCGACATTGCCCTGTGGAAGTTCGAGACCCCCAAGTACTACGTCACTGTCATTGGTAAGCCTT---ATC-TCTTC---ACATTATTTTT--CATTATTAGATGCTAACAGTTCTAAAA-CAGATGCCCCTGGTCACAGAGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCTGACTGCGCTATTCTGATCATTGCTGCCGGTACCGGTGAGTTCGAGGCCGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTGGCTTTCACCCTCGGTGTCAAGCAGCTGATTGTTGCCATCAACAAGATGGACACTGCCAAGTGGGCTGAGGCTCGTTACAACGAGATTATCAAGGAGACCTCCACCTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTTGCCTTTGTCCCCATCTCTGGTTTCAACGGT Ceratocystis_cercfabiensis_C3355EucHainan GACAAGCGTACCATTGAGAAGTTCGAGAATAAGTCTCCCCTATTTCCCCTCATTGTTGTGGACAGCATGCAATTGGTGTTGCTGAGCTCTACTTTTT-GATGACGCTTTACCCTCTG---TTCTGGCCATCCAAGGGCGGGGTAACGTCACTGAAGTGGGGCTGCTATTTTTTTT--CTCTAAATGGCGTGCATGCTGTCTCCACTTTCGTGCTTCAATTCAATTCATGTACTGACCTTCTTTGCACAGGAGGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACTATCGACATTGCCCTGTGGAAGTTCGAGACCCCCAAGTACTACGTCACTGTCATTGGTAAGCCTT---ATC-TCTTC---ACATTATTTTT--CATTATTAGATGCTAACAGTTCTAAAA-CAGATGCCCCTGGTCACAGAGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCTGACTGCGCTATTCTGATCATTGCTGCCGGTACCGGTGAGTTCGAGGCCGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTGGCTTTCACCCTCGGTGTCAAGCAGCTGATTGTTGCCATCAACAAGATGGACACTGCCAAGTGGGCTGAGGCTCGTTACAACGAGATTATCAAGGAGACCTCCACCTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTTGCCTTTGTCCCCATCTCTGGTTTCAACGGT Ceratocystis_uchidae_C1714TaroHawaii GACAAGCGTACCATTGAGAAGTTCGAGAATAAGTCTCCCCTATTTCCCCTCATTGTTGTGGACAGCATGCAATTGGTGTTGCTGAGCTCTACTTTTT-GATGACGCTTTACCCTCTG---TTCTGGCCATCCAAGGGCGGGGTAACGTCACTGAAGTGGGGCTGCTATTTTTTT---CTCTAAATGGCGTGCATGCTGTCTCCACTTTCGTGCTTCAATTCAATTCATGTACTGACCTTCTTTGCACAGGAGGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACTATCGACATTGCCCTGTGGAAGTTCGAGACCCCCAAGTACTACGTCACTGTCATTGGTAAGCCTT---ATC-TCTTC---ACATTATTTTT--CATTATTAGATGCTAACAGTTCTAAAA-CAGATGCCCCTGGTCACAGAGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCTGACTGCGCTATTCTGATCATTGCTGCCGGTACCGGTGAGTTcGaGGCCGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTGGCTTTCACCCTCGGTGTCAAGCAGCTGATTGTTGCCATCAACAAGATGGACACTGCCAAGTGGGCTGAGGCTCGTTACAACGAGATTATCAAGGAGACCTCCACCTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTTGCCTTTGTCCCCATCTCTGGTTTCAACGGT Ceratocystis_uchidae_C1715ColocaHawaii2 GACAAGCGTACCATTGAGAAGTTCGAGAATAAGTCTCCCCTATTTCCCCTCATTGTTGTGGACAGCATGCAATTGGTGTTGCTGAGCTCTACTTTTT-GATGACGCTTTACCCTCTG---TTCTGGCCATCCAAGGGCGGGGTAACGTCACTGAAGTGGGGCTGCTATTTTTTT---CTCTAAATGGCGTGCATGCTGTCTCCACTTTCGTGCTTCAATTCAATTCATGTACTGACCTTCTTTGCACAGGAGGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACTATCGACATTGCCCTGTGGAAGTTCGAGACCCCCAAGTACTACGTCACTGTCATTGGTAAGCCTT---ATC-TCTTC---ACATTATTTTT--CATTATTAGATGCTAACAGTTCTAAAA-CAGATGCCCCTGGTCACAGAGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCTGACTGCGCTATTCTGATCATTGCTGCCGGTACCGGTGAGTTCGAGGCCGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTGGCTTTCACCCTCGGTGTCAAGCAGCTGATTGTTGCCATCAACAAGATGGACACTGCCAAGTGGGCTGAGGCTCGTTACAACGAGATTATCAAGGAGACCTCCACCTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTTGCCTTTGTCCCCATCTCTGGTTTCAACGGT Ceratocystis_uchidae_C1931XanthoFIJI GACAAGCGTACCATTGAGAAGTTCGAGAATAAGTCTCCCCTATTTCCCCTCATTGTTGTGGACAGCATGCAATTGGTGTTGCTGAGCTCTACTTTTT-GATGACGCTTTACCCTCTG---TTCTGGCCATCCAAGGGCGGGGTAACGTCACTGAAGTGGGGCTGCTATTTTTTT---CTCTAAATGGCGTGCATGCTGTCTCCACTTTCGTGCTTCAATTCAATTCATGTACTGACCTTCTTTGCACAGGAGGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACTATCGACATTGCCCTGTGGAAGTTCGAGACCCCCAAGTACTACGTCACTGTCATTGGTAAGCCTT---ATC-TCTTC---ACATTATTTTT--CATTATTAGATGCTAACAGTTCTAAAA-CAGATGCCCCTGGTCACAGAGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCTGACTGCGCTATTCTGATCATTGCTGCCGGTACCGGTGAGTTCGAGGCCGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTGGCTTTCACCCTCGGTGTCAAGCAGCTGATTGTTGCCATCAACAAGATGGACACTGCCAAGTGGGCTGAGGCTCGTTACAACGAGATTATCAAGGAGACCTCCACCTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTTGCCTTTGTCCCCATCTCTGGTTTCAACGGT Ceratocystis_corymbicola_HQ236453corymbicola NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTCTCCCCTATTTCCCCTCATTGTTGTGGACAGCATGCAATTGGTGTTGCTGAGCTCTACTTTTT-GATGACGCTTTATCCTCTG---TTCTGGCCATCCAAGGGCGGGGTAACGTCACTGAAGTGGGGCTGCTATTTTTTT---CTCTAAATGGCGTGCATGCTGTCTCCACTTTCGTGCTTCAATTCAATTCATGTACTGACCTTCTTTGCACAGGAGGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACTATCGACATTGCCCTGTGGAAGTTCGAGACCCCCAAGTACTACGTCACTGTCATTGGTAAGCATT---ATC-TCTTC---ACATTATTTTT--CATTATTAGATGCTAACAGTTCTAAAA-CAGATGCCCCTGGTCACAGAGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCTGACTGCGCTATTCTGATCATTGCTGCCGGTACCGGTGAGTTCGAGGCCGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTGGCTTTCACCCTCGGTGTCAAGCAGCTGATTGTTGCCATCAACAAGATGGACACTGCCAAGTGGGCTGAGGCTCGTTACAACGAGATTATCAAGGAGACCTCCACCTTCATCAAGAAGGTCGGTTACAACCCCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Ceratocystis_corymbicola_HQ236455corymbicola NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTCTCCCCTATTTCCCCTCATTGTTGTGGACAGCATGCAATTGGTGTTGCTGAGCTCTACTTTTT-GATGACGCTTTACCCTCTG---TTCTGGCCATCCAAGGGCGGGGTAACGTCACTGAAGTGGGGCTGCTATTTTTTT---CTCTAAATGGCGTGCATGCTGTCTCCACTTTCGTGCTTCAATTCAATTCATGTACTGACCTTCTTTGCACAGGAGGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACTATCGACATTGCCCTGTGGAAGTTCGAGACCCCCAAGTACTACGTCACTGTCATTGGTAAGCATT---ATC-TCTTC---ACATTATTTTT--CATTATTAGATGCTAACAGTTCTAAAA-CAGATGCCCCTGGTCACAGAGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCTGACTGCGCTATTCTGATCATTGCTGCCGGTACCGGTGAGTTCGAGGCCGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTGGCTTTCACCCTCGGTGTCAAGCAGCTGATTGTTGCCATCAACAAGATGGACACTGCCAAGTGGGCTGAGGCTCGTTACAACGAGATTATCAAGGAGACCTCCACCTTCATCAAGAAGGTCGGTTACAACCCCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Ceratocystis_polychroma_C2240Cpolychroma GACAAGCGTACCATCGagAAGTTcGaGAATAAGTCTcCCCTATTTCCCCTCATTGTTGTGGACAGCATGCAATTGGTGTTGCTGAGCTCTACTTTTT-GATGACGCTTTACCCTCTG---TTCTGGCCATCCAAGGGCGGGGTAACGTCACTGAAGTGGGGCTGCTATTTTTTTTTTCTCTAAATGGCGTGCATGCTGTCTCCACTTTCGTGCTTCAATTCAATTCATGTACTGACCTTCTTTGCACAGGAGGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGcTCAAGGCCGAGCGTgAGCGTGGTATCACTaTcGACATTGCCCTGTGGAAGTTCGAGACCCCCAAGTACTACGTCACTGTCATTGGTAAGCCTT---ATC-TCTTC---ACATTATTTTT--CATTATTAGATGCTAACAGTTCTAAAA-CAGATGCCCCTGGTCACAGAGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCTGACTGCGCTATTCTGATCAtTGCTGCCGGTACCGGTGAGTTcGAGGCCGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTcTGcTGGCTTTCACCCTCGGTGTCAAGCAGCTGATTGTTGCCATCAACAAGATGGACACTGCCAAGTGGGCTGAGGCTCGTTACAACGAGATTATCAAGGAGACCTCCACCTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTTGCCTTTGTCCCCATCTCTGGTTTCAACGGT Ceratocystis_fimbriata_spX_C2239CeratocystisSP GACAAGCGTACCATTGAGAAGTTCGAGAATAAGTCTCCCCTATTTCCCCTCATTGTTGTGGACAGCATGCAATTGGTGTTGCTGAGCTCTACTTTTT-GATGACGCTTTACCCTCTG---TTATGGCCATCGAAGGGCGGGGTAACGTCACTGAAGTGGGGCTGCTATTTTTTTT--CTCTAAATGGCGTGCATGCTGTCTCCACTTTCGTGCTTCAATTTAATTCATGTACTGACCTTCTTTGCACAGGAGGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCgAGCGTGAGCGTGGTATCACTATCGACATTGCCCTGTGGAAGTTCGAGACCCCCAAGTACTACGTCACTGTCATTGGTAAGCCTT---ATC-TCTTC---ATATTATTTTT--CaTTATTAGATGCTAACAGTTCTAAAA-CAGATGCCCCTGGTCACAGAGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCTGACTGCGCTATTCTGATCATTGCTGCCGGTACCGGTGAGTTCGAGGCCGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTGGCTTTCACCCTCGGTGTCAAGCAGCTGATTGTTGCCATCAACAAGATGGACACTGCCAAGTGGGCTGAGGCTCGTTTCAACGAGATTATCAAGGAGACCTCCACCTTCATCAAGAAGGTCGGTTACAACCCCAAGACTGTTGCCTTTGTCCCCATCTCTGGTTTCAACGGT Ceratocystis_collisensis_KP727635collisensis GACAAGCGTACCATTGAGAAGTTCGAGAATAAGTCTCCCCTATTTCCCCTCATTGTTGTGGACAGTATGCAATTGGTGTTGCTGAGCTCTACTTTTT-GATGACGCTTTACCCTCTGTTCTTCTGGCAATCCAAGGGCGGGGTAACGTCACTGAAGTGGGGCTGTTATTTTT------TCTAAATGGCTTGCATGCTGTCTCCACTTTCGTGCTTGAATTCAATTCATGTACTGACCTTCTTTGCACAGGAGGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACTATCGACATTGCCCTATGGAAGTTCGAGACCCCCAAGTACTACGTCACTGTCATTGGTAAGCCTT---ATC-TCTTG------TTATTTTT-CCATTATTAGATGCTAACAGTTCTAAAA-CAGATGCCCCTGGCCACAGAGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCTGACTGCGCTATTCTGATCATTGCTGCCGGTACCGGTGAGTTCGAGGCCGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTGGCTTTCACCCTCGGTGTCAAGCAGCTGATTGTTGCCATCAACAAGATGGACACCGCCAAGTGGGCTGAGGCTCGTTTCAACGAGATTATCAAGGAGACCTCCACCTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTTGCCTTTGTCCCCATCTCTGGCTTCAACNNN Ceratocystis_larium_EU881900larium NNNNNNNNNNCCATTGAGAAGTTCGAGAATAAGTCTCCCCTATTTCCCCTCATTGTTGTGGACAGTATGCAATTGGTGTTGCTGAGCTCTACTTTTT-GATGACGCTTTACCCTCTGTTCTTCTGGCAATCCAAGGGCGGGGTAACGTCACTGAAGTGGGGCTGTTATTTTT------TCTAAATGGCGTGCATGCTGTCTCCACTTTCGTGCTTGAATTCAATTCATGTACTGACCTTCTTTGCACAGGAGGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACTATCGACATTGCCCTATGGAAGTTCGAGACCCCCAAGTACTACGTCACTGTCATTGGTAAGCCTT---ATC-TCTTG------TTATTTTT-CCATTATTAGATGCTAACAGTTCTAAAA-CAGATGCCCCTGGCCACAGAGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCTGACTGCGCTATTCTGATCATTGCTGCCGGTACCGGTGAGTTCGAGGCCGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTGGCTTTCACCCTCGGTGTCAAGCAGCTGATTGTTGCCATCAACAAGATGGACACCGCCAAGTGGGCTGAGGCTCGTTTCAACGAGATCATCAAGGAGACCTCCACCTTCATCAAGAAGGTCGGTTACAACCCCAAGACTGTTGCCTTCGTCCCCATCTCTGGCTTCAACGGG Ceratocystis_albofundus_C1048Calbofundus GACAAGCGTACCATTGAGAAGTTCGAGAATAAGTCTCCCCTATTTCCCCTCATTGATGTGGACAGCAAGCAATTGGTGTTGCCAAGCTCTACTT----GATGACGCTTTGCCCTTTC---TTCGTGCTATTGAAGGGCGGGGTAGCGTCACTGAAGTGGGGCTGCTATTAATTTT---TCTAAATGGCTTGCATGCTGTCTCCACTTTCTTGTTTCAAATCAATTCATGTACTGACATTCTTTGTACAGGAGGCTGCTGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACTATCGACATTGCCCTGTGGAAGTTCGAGACCCCCAAGTACTACGTCACTGTCATTGGTAAGCCTTGTTGTC-TATTG-----ATTTTTTTTTTCATTATTCCATGCTAACGTCTTTAAAA-CAGATGCCCCTGGTCACAGAGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCTGACTGCGCTATTCTGATCATTGCTGCCGGTACCGGTGAGTTCGAGGCCGGTATCTCCAAGGATGGCCAGACCCGTGAGCACGCTCTGCTGGCTTTCACCCTCGGTGTCAAGCAGCTGATTGTTGCCATCAACAAGATGGACACCGCTAAGTGGGCTGAGGCTCGTTACAACGAGATCATCAAGGAGACCTCCACCTTCATCAAGAAGGTCGGTTACAACCCCAAGACTGTTGCCTTCGTCCCCATCTCTGGTTTCAACGGT Ceratocystis_variospora_C1963CvarioPrunus GACAAGCGTACCATTGAGAAGTTCGAGAATAAGTCTCCCCTATTTCCCCTCATTGTTGTGGATGACATGAAATTGGCCTTGCTGAGCTCTACTTTAT-GATGACGCTTTACCCTCTG---TTCTGGCCATCCAAGGGCGGGGTAACGTCACTGAAGTGGGGCTACTATTTTTTT--CTTCTAAATAGCATGCATGCTGTCTCCACTTTCATGCTTCAATTCAATTCATGTACTGACCTTCTTTGCACAGGAGGCCGCTGAGCTCGGTAAGGGTTCCTTCAAGTACGCCTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACTATCGACATTGCCCTGTGGAAGTTCGAGACCCCCAAGTACTACGTCACTGTCATTGGTAAGCATTCTTGTCACCTTGTATATATATATATTTTCATCATCAGATGCTAACAATTTTAAAA-CAGATGCCCCTGGTCACAGAGATTTCATCAAGAACATGATCACTGGTACTTCCCAGGCTGATTGCGCTATTCTGATCATTGCTGCCGGTACCGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAgCACGCTCTGCTGGCTTTCACCCTCGGTGTTAAGCAGCTGATTGTTGCCATCAACAAGATGGACACCGCCAAGTGGGCTGAGGCTCGTTACAACGAGATTATCAAGGAGACCTCCACCTTCATCAAGAAGGTCGGTTACAACCCCAAGACTGTTGCCTTTGTCCCCATCTCTGGTTTCAACGGT ; OPTIONS GAP = newstate; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 773; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 773; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 773; END; BEGIN TREES; Title 'Trees from "Shortef012916.tre"'; ID 015a7276d1003; LINK Taxa = Taxa; TRANSLATE [0] 1 Ceratocystis_obpyriformis_EU244937obpyri23806, [1] 2 Ceratocystis_zombamontana_EU244934zombamontan, [2] 3 Ceratocystis_pirilliformis_HQ236446pirCMW29822, [3] 4 Ceratocystis_pirilliformis_HQ236445pirCMW29825, [4] 5 Ceratocystis_polyconidia_AY528983Cpir118128, [5] 6 Ceratocystis_polyconidia_EU244940polyconidia, [6] 7 Ceratocystis_atrox_EF070403atrox19385, [7] 8 Ceratocystis_atrox_EF070404atrox19387, [8] 9 Ceratocystis_ficicola_C1355FicusJapan, [9] 10 Ceratocystis_ficicola_C1393FicusJapan, [10] 11 Ceratocystis_cercfabiensis_KP727620cercfabien, [11] 12 Ceratocystis_cercfabiensis_KP727643cercfabiens, [12] 13 Ceratocystis_cercfabiensis_C3302EucGuondong, [13] 14 Ceratocystis_fimbriata_spY_C3372EucKunmimg, [14] 15 Ceratocystis_cercfabiensis_C3355EucHainan, [15] 16 Ceratocystis_uchidae_C1714TaroHawaii, [16] 17 Ceratocystis_uchidae_C1715ColocaHawaii2, [17] 18 Ceratocystis_uchidae_C1931XanthoFIJI, [18] 19 Ceratocystis_corymbicola_HQ236453corymbicola, [19] 20 Ceratocystis_corymbicola_HQ236455corymbicola, [20] 21 Ceratocystis_polychroma_C2240Cpolychroma, [21] 22 Ceratocystis_fimbriata_spX_C2239CeratocystisSP, [22] 23 Ceratocystis_collisensis_KP727635collisensis, [23] 24 Ceratocystis_larium_EU881900larium, [24] 25 Ceratocystis_albofundus_C1048Calbofundus, [25] 26 Ceratocystis_variospora_C1963CvarioPrunus; TREE tef1_PAUP_1 = (1,((2,3,4,(5,6)),((((7,8),(11,12,(13,14,15,(16,17,18,(19,20)),21,(22,(25,26))))),(23,24)),(9,10)))); TREE tef1_PAUP_2 = (1,((2,3,4,(5,6)),((((7,8),(11,(12,(13,14,15,(16,17,18,(19,20)),21,(22,(25,26)))))),(23,24)),(9,10)))); TREE tef1_PAUP_3 = (1,((2,3,4,(5,6)),((((7,8),((11,(13,14,15,(16,17,18,(19,20)),21,(22,(25,26)))),12)),(23,24)),(9,10)))); TREE tef1_PAUP_4 = (1,((2,(3,4),(5,6)),((((7,8),(11,12,(13,14,15,(16,17,18,(19,20)),21,(22,(25,26))))),(23,24)),(9,10)))); TREE tef1_PAUP_5 = (1,((2,(3,4),(5,6)),((((7,8),(11,(12,(13,14,15,(16,17,18,(19,20)),21,(22,(25,26)))))),(23,24)),(9,10)))); TREE tef1_PAUP_6 = (1,((2,(3,4),(5,6)),((((7,8),((11,(13,14,15,(16,17,18,(19,20)),21,(22,(25,26)))),12)),(23,24)),(9,10)))); END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1487980113754; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 402153883299191682; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 5910357408111863302; mqVersion 320; checksumv 0 3 2029875066 null getNumChars 773 numChars 773 getNumTaxa 26 numTaxa 26 short true bits 1152921504606846991 states 15 sumSquaresStatesOnly 448355.0 sumSquares 1.1529215046068558E19 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 100; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1709 842; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #402153883299191682 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #402153883299191682; getWindow; tell It; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; getTable; tell It; rowNamesWidth 185; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1609 770; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.ibeam; endTell; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; showTrees 0 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 1; getWindow; tell It; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1609 770; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.lists.TreesList.TreesListWindow.ibeam; endTell; endTell; showWindow; endTell; endTell; getEmployee #mesquite.trees.BasicTreeWindowCoord.BasicTreeWindowCoord; tell It; makeTreeWindow #402153883299191682 #mesquite.trees.BasicTreeWindowMaker.BasicTreeWindowMaker; tell It; suppressEPCResponse; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 1; setTreeBlockID 015a7276d1003; toggleUseWeights off; endTell; setAssignedID 1886.1487979100215.2153095942513216178; getTreeWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1609 770; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; setTool mesquite.trees.BasicTreeWindowMaker.BasicTreeWindow.reroot; endTell; setActive; getTreeDrawCoordinator #mesquite.trees.BasicTreeDrawCoordinator.BasicTreeDrawCoordinator; tell It; suppress; setTreeDrawer #mesquite.trees.SquareLineTree.SquareLineTree; tell It; setNodeLocs #mesquite.trees.NodeLocsStandard.NodeLocsStandard; tell It; branchLengthsToggle on; toggleScale on; toggleBroadScale off; toggleCenter on; toggleEven on; setFixedTaxonDistance 0; endTell; setEdgeWidth 4; showEdgeLines on; orientUp; endTell; setBackground White; setBranchColor Black; showNodeNumbers off; showBranchColors on; labelBranchLengths off; centerBrLenLabels on; showBrLensUnspecified on; showBrLenLabelsOnTerminals on; setBrLenLabelColor 0 0 255; setNumBrLenDecimals 6; desuppress; getEmployee #mesquite.trees.BasicDrawTaxonNames.BasicDrawTaxonNames; tell It; setColor Black; toggleColorPartition off; toggleColorAssigned on; toggleShadePartition off; toggleShowFootnotes on; toggleNodeLabels on; toggleCenterNodeNames off; toggleShowNames on; namesAngle ?; endTell; endTell; setTreeNumber 6; setTree '((25,(22,(13,14,15,(16,17,18,(19,20)),21,(11,(12,((7,8),((23,24),((9,10),((2,(3,4),(5,6)),1))))))))),26);'; setDrawingSizeMode 0; toggleLegendFloat on; scale 0; toggleTextOnTree off; togglePrintName on; showWindow; endTell; desuppressEPCResponse; getEmployee #mesquite.trees.ColorBranches.ColorBranches; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.ornamental.BranchNotes.BranchNotes; tell It; setAlwaysOn off; endTell; getEmployee #mesquite.ornamental.ColorTreeByPartition.ColorTreeByPartition; tell It; colorByPartition off; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocDoubles.DrawTreeAssocDoubles; tell It; setOn on; setDigits 4; writeAsPercentage off; toggleCentred off; toggleHorizontal on; toggleWhiteEdges on; toggleShowOnTerminals on; setFontSize 10; setOffset 0 0; endTell; getEmployee #mesquite.ornamental.DrawTreeAssocStrings.DrawTreeAssocStrings; tell It; setOn on; toggleCentred on; toggleHorizontal on; setFontSize 10; setOffset 0 0; toggleShowOnTerminals on; endTell; getEmployee #mesquite.trees.TreeInfoValues.TreeInfoValues; tell It; panelOpen false; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #5910357408111863302 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1609 770; setLocation 8 23; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; toggleShowBoldCellText off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;