#NEXUS BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=70; TAXLABELS Potato_leafroll_virus_14.1 Potato_leafroll_virus_14.2 Potato_leafroll_virus_1457 Potato_leafroll_virus_Ard912MR Potato_leafroll_virus_Ard923A Potato_leafroll_virus_Ard924A Potato_leafroll_virus_Ard930A Potato_leafroll_virus_ASL2000 Potato_leafroll_virus_Au16 Potato_leafroll_virus_Au40b Potato_leafroll_virus_Au252 Potato_leafroll_virus_Br1 Potato_leafroll_virus_Canadian Potato_leafroll_virus_CIP01 Potato_leafroll_virus_CU87 Potato_leafroll_virus_D33 Potato_leafroll_virus_Es4 Potato_leafroll_virus_Fr1 'Potato leafroll virus PLRV-HB' 'Potato leafroll virus PLRV-IM' Potato_leafroll_virus_is4 Potato_leafroll_virus_is5 Potato_leafroll_virus_is6 Potato_leafroll_virus_is16 Potato_leafroll_virus_is24 Potato_leafroll_virus_is26 Potato_leafroll_virus_is29 Potato_leafroll_virus_is30 Potato_leafroll_virus_isSAM Potato_leafroll_virus_JokerMV10 'Potato leafroll virus JPI-1' Potato_leafroll_virus_K5 Potato_leafroll_virus_Kerman 'Potato leafroll virus KHPI-1' Potato_leafroll_virus_L7 Potato_leafroll_virus_L13B Potato_leafroll_virus_L13D Potato_leafroll_virus_L18 Potato_leafroll_virus_Mah11 Potato_leafroll_virus_Mayo Potato_leafroll_virus_NL Potato_leafroll_virus_Noir Potato_leafroll_virus_OP 'Potato leafroll virus OTNI-2' 'Potato leafroll virus PBI-6' Potato_leafroll_virus_Australian 'Potato leafroll virus PLRV-Ar53' 'Potato leafroll virus PLRV-Ar91' 'Potato leafroll virus PLRV-Az36' 'Potato leafroll virus PLRV-Az79' 'Potato leafroll virus PLRV-Es18' 'Potato leafroll virus PLRV-Es87' 'Potato leafroll virus PLRV-Ha94' 'Potato leafroll virus PLRV-Ha103' 'Potato leafroll virus PLRV-Kh64' 'Potato leafroll virus PLRV-Kh116' 'Potato leaf roll virus PLRV-V' Potato_leafroll_virus_Poland 'Potato leafroll virus SMI-5' Potato_leafroll_virus_SymlessLS10 Potato_leafroll_virus_T21 Potato_leafroll_virus_TYTV2 Potato_leafroll_virus_US_CA Potato_leafroll_virus_VIRUBRA_1.045 Potato_leafroll_virus_VIRUBRA_1.046 Potato_leafroll_virus_VIRUBRA_1.047 'Potato leafroll virus PLRV-YN' Potato_leafroll_virus_Z7 Potato_leafroll_virus_Zim13 Cereal_yellow_dwarf_virus_RPV ; END; BEGIN CHARACTERS; TITLE P0_alignment; DIMENSIONS NCHAR=173; FORMAT DATATYPE = Protein INTERLEAVE GAP = - MISSING = ?; MATRIX Potato_leafroll_virus_14.1 MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPSIELDPTTAAARSELLRYNSAGSN Potato_leafroll_virus_14.2 MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN Potato_leafroll_virus_1457 MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSVSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN Potato_leafroll_virus_Ard912MR MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN Potato_leafroll_virus_Ard923A MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN Potato_leafroll_virus_Ard924A MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN Potato_leafroll_virus_Ard930A MIVTQSGTLLFDQRFLSKFVVIALPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN Potato_leafroll_virus_ASL2000 MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQHCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPSIELDPTTVAARSELLRYNSVGSN Potato_leafroll_virus_Au16 MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYSEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN Potato_leafroll_virus_Au40b MIVTQSGILLFDQRFLSKFVVIAFPLLQQAYGYSEQHCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN Potato_leafroll_virus_Au252 MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYSEQHCRSLYVPLLNGRSTAGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN Potato_leafroll_virus_Br1 MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN Potato_leafroll_virus_Canadian MIVTQSGILLFDQRFLSKFVVIAFPLLQQAYGYSEQYCRSLYIPLLNGRSTSGLQLSLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN Potato_leafroll_virus_CIP01 MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPSIELDPTTAAARSELLRYNSVGSN Potato_leafroll_virus_CU87 MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN Potato_leafroll_virus_D33 MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN Potato_leafroll_virus_Es4 MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN Potato_leafroll_virus_Fr1 MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN 'Potato leafroll virus PLRV-HB' MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN 'Potato leafroll virus PLRV-IM' MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGSTIKLDPTTAAARSELLRYNAAGSN Potato_leafroll_virus_is4 MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPSIELDPTTAAARSELLRYNSVGSN Potato_leafroll_virus_is5 MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAATRSELLRYNAAGSN Potato_leafroll_virus_is6 MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAATRSELLRYNAAGSN Potato_leafroll_virus_is16 MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPSIELDPTTAAARSELLRYNSVGSN Potato_leafroll_virus_is24 MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSISGLQLPLHYELEWGLLGHPAIQVGPSIELDPTTAAARSELLRYNSVGSN Potato_leafroll_virus_is26 MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPSIELDPTTAAVRSELLQYNSVGSN Potato_leafroll_virus_is29 MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPSIELDPTTAAARSELLRYNSVGSN Potato_leafroll_virus_is30 MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPSIELDPTTAAARSELLRYNSVGSN Potato_leafroll_virus_isSAM MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN Potato_leafroll_virus_JokerMV10 MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPSIELDPTTAAARSELLRYNSVGSN 'Potato leafroll virus JPI-1' MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN Potato_leafroll_virus_K5 MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTTAARSELLRYNAAGSN Potato_leafroll_virus_Kerman MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN 'Potato leafroll virus KHPI-1' MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAAGSELLRYNAAGSN Potato_leafroll_virus_L7 MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSVSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN Potato_leafroll_virus_L13B MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPSIELDPTTAAARSELLRYNSVGSN Potato_leafroll_virus_L13D MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPSIELDLTTAAARSELLRYNSVGSN Potato_leafroll_virus_L18 MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAVGSN Potato_leafroll_virus_Mah11 MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPSTAAARSELLRYNAAGSN Potato_leafroll_virus_Mayo MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLHVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGLTIKLDPTTAAARSELLRYNAAGSN Potato_leafroll_virus_NL MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYIPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN Potato_leafroll_virus_Noir MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGSTIKLDPTTAAARSELLRYNAAGSN Potato_leafroll_virus_OP MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN 'Potato leafroll virus OTNI-2' MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN 'Potato leafroll virus PBI-6' MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQLGPSIELDPTTAAARSELLRYNSVGSN Potato_leafroll_virus_Australian MIVTQSGILLFDQRFLSKFVVIAFPLLQQAYGYSEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN 'Potato leafroll virus PLRV-Ar53' MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYIPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN 'Potato leafroll virus PLRV-Ar91' MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYIPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN 'Potato leafroll virus PLRV-Az36' MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYIPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN 'Potato leafroll virus PLRV-Az79' MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYIPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN 'Potato leafroll virus PLRV-Es18' MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYIPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN 'Potato leafroll virus PLRV-Es87' MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYIPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN 'Potato leafroll virus PLRV-Ha94' MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYIPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN 'Potato leafroll virus PLRV-Ha103' MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYIPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN 'Potato leafroll virus PLRV-Kh64' MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYIPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN 'Potato leafroll virus PLRV-Kh116' MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYIPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN 'Potato leaf roll virus PLRV-V' MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLYYELEWGLLGHPAIQVGPNIKLDPTTAAARSELLRYNAAGSN Potato_leafroll_virus_Poland MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN 'Potato leafroll virus SMI-5' MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN Potato_leafroll_virus_SymlessLS10 MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPSIELDPTTAAARSELLRYNSVGSN Potato_leafroll_virus_T21 MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYIPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN Potato_leafroll_virus_TYTV2 MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN Potato_leafroll_virus_US_CA MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN Potato_leafroll_virus_VIRUBRA_1.045 MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPSIELDPTTAAARSELLRYNSVGSN Potato_leafroll_virus_VIRUBRA_1.046 MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN Potato_leafroll_virus_VIRUBRA_1.047 MIVTQSGTLHFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPITAAARSELLRYNAAGSN 'Potato leafroll virus PLRV-YN' MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN Potato_leafroll_virus_Z7 MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAATRSELLRYNAAGSN Potato_leafroll_virus_Zim13 MIVTQSGTLLFDQRFLSKFVVIAFPLLQQAYGYNEQYCRSLYVPLLNGRSTSGLQLPLHYELEWGLLGHPAIQVGPTIKLDPTTAAARSELLRYNAAGSN Cereal_yellow_dwarf_virus_RPV MFIAQCGVLVFDSHFFTRYVLLALPLFTRAFRYNEDFCVSLFLPLLTGESSRGLNLPLSYELRWGLVGYPAFSAGPELRIDLSTMSTRSELLRYNTSGAK Potato_leafroll_virus_14.1 GWGMEAFVRICLELERSPLRNGNYLVRSLDATVDYFVDHRSLMLNFARLYNQLLQGAKSFRATGLPYVSEDYQ Potato_leafroll_virus_14.2 GWGMEAFVRICLELERSPLRDGNYLVRSLDAKVDHFVDHRSLMLNLARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_1457 GWGMEAFVRICLELERSPLRDGNYLVRSLDAKVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_Ard912MR GWGMEAFVRICLELERSPLRDGNYLVRSLDAEVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGYPYVSEDYQ Potato_leafroll_virus_Ard923A GWGMEAFVRICLELERSPLRDGNYLVRSLDAEVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_Ard924A GWGMEAFVRICLEFERSPLRDGNYLDRPLDAEVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGYPYVSEDYQ Potato_leafroll_virus_Ard930A GWGMEAFVRICLELERSPLRDGNYLVRSLDAEVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_ASL2000 GWGMEAFVRICLELERSPLRNGNYLVRSLDATVDYFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_Au16 GWGMEAFVRICLELERSPLRNGNYLVRSLDAQVDHFVDHRSLLLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_Au40b GWGMEALVRICLELERSPLRNGNYLVRSLDAQVDHFVDHRSLLLNFARLYNQLLQGAKSFRATGIPYVSEDYQ Potato_leafroll_virus_Au252 GWGMEAFVRICLELERSPLRNGNYLVRSLDAQVDHFVDHRSLLLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_Br1 GWGMEAFVRICLELERSPLRDGNYLVRSLDAEVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_Canadian GWGMEAFVRICLELERSPLRDGNYLVRSLDAEVDHFVDHRSLLLNFARLYNQLLQGAKSFRATGFPFLSEDYQ Potato_leafroll_virus_CIP01 GWGMEAFVRICLELERSPLRNGNYLVRSLDATVDYFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_CU87 GWGMEAFVRICLELERNPLRDGNHLVRSLDAEVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_D33 GWGMEAFVRICLELERSPLHDGNYLVRSLDAEVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_Es4 GWGMEAFVRICLELERSPLRDGNYLVRSLDAEVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_Fr1 GWGMEAFVRICLELERSPLRDGNYLVRSLDAKVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ 'Potato leafroll virus PLRV-HB' GWGMEAFVRICLELERSPLRDGNYLVRSLDAKVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ 'Potato leafroll virus PLRV-IM' GWGMEAFVRICLELERSPLRDGNYLVRSLDAKVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_is4 GWGMEAFVRICLELERSPLRNGNYLVRSLDATVDYFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_is5 GWGMEAFVRICLELERSPLRDGNYLVRSLDAEVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_is6 GWGMEAFVRICLELERSPLRDGNYLVRSLDAEVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_is16 GWGMEAFVRICLELERSPLRNGNYLVRSLDATVDYFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_is24 GWGMEAFVRICLELERSPLRNGNYLVRSLDATVDYFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_is26 GWGMEAFVRICLELERSPLRNGNYLVRSLDATVDYFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_is29 GWGMEAFVRICLELERSPLRNGNYLVRSLDATVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_is30 GWGMEAFVRICLELERSPLRNGNYLVRSLDATVDYFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_isSAM GWGMEAFVRICLELERSPLRDGNYLVRSLDAEVDHFVDHRSLMFNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_JokerMV10 GWGMEAFVRICLELERSPLRNGNYLVRSLDATVDYFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ 'Potato leafroll virus JPI-1' GWGMEAFVRICLELERSPLRDGNYLVRSLDAEVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_K5 GWGMETFVRICLELERSPLRDGNYLVRSLDAEVDHSVDHRSLMLNLARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_Kerman GWGMEAFVRICLELERSPLRDGNYLVRSLDAEVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ 'Potato leafroll virus KHPI-1' GWGMEAFVRICLELERSPLRDGNYLVRSLDAEVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_L7 GWGMEAFVRICLELERSPLRDGNYLVRSLDAKVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_L13B GWGMEAFVRICLELERSPLRNGNYLVRSLDATVDYFIDHRSLMLNFARLYNQLLQGAKSFRATGLPYVSEDYQ Potato_leafroll_virus_L13D GWGMEAFVRICLELERSPLRNGNYLVRSLDATVDYFIDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_L18 GWGMEAFVRICLELERSPLRDGNYLVRSLDAKVDHFVDHRSLMLNFARLYNQLLQGAKSFRATDFPYVSEDYQ Potato_leafroll_virus_Mah11 GWGMEAFVRICLEFERSPLRDGNYLVRSLNAEVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGYPYVSEDYQ Potato_leafroll_virus_Mayo GWGMEAFVRICLELERSPLRDGNYLVRSLDAKVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_NL GWGMEAFVRICLELERSPLRDGNHLVRSLDAKVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_Noir GWGMEAFVRICLELERSPLRDGNYLVRSLDAEVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_OP GWGMEAFVRICLELERSPLRDGNYLVRSLDAEVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ 'Potato leafroll virus OTNI-2' GWGMEAFVRICLELERSPLRDGNYLVRSLDAEVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ 'Potato leafroll virus PBI-6' GWGMEAFVRICLELERSPLRNGNYLVRSLDATVDYFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_Australian GWGMEALVRICLELERSPLRNGNYLVRSLDAQVDHFVDHRSLLLNFARLYNQLLQGAKSFRATGIPYVSEDYQ 'Potato leafroll virus PLRV-Ar53' GWGMEAFVRICLELERSPLRDGNHLVRSLDAKVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ 'Potato leafroll virus PLRV-Ar91' GWGMEAFVRICLELERSPLRDGNHLVRSLDAKVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ 'Potato leafroll virus PLRV-Az36' GWGMEAFVRICLELERSPLRDGNHLVRSLDAKVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ 'Potato leafroll virus PLRV-Az79' GWGMEAFVRICLELERSPLRDGNHLVRSLDAKVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ 'Potato leafroll virus PLRV-Es18' GWGMEAFVRICLELERSPLRDGNHLVRSLDAKVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ 'Potato leafroll virus PLRV-Es87' GWGMEAFVRICLELERSPLRDGNHLVRSLDAKVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ 'Potato leafroll virus PLRV-Ha94' GWGMEAFVRICLELERSPLRDGNHLVRSLDAKVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ 'Potato leafroll virus PLRV-Ha103' GWGMEAFVRICLELERSPLRDGNHLVRSLDAKVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ 'Potato leafroll virus PLRV-Kh64' GWGMEAFVRICLELERSPLRDGNHLVRSLDAKVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ 'Potato leafroll virus PLRV-Kh116' GWGMEAFVRICLELERSPLRDGNHLVRSLDAKVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ 'Potato leaf roll virus PLRV-V' GWGMEAFVRICLELERSPLRDGNYLVRSLDAKVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGLPYVSEDYQ Potato_leafroll_virus_Poland GWGMEAFVRICLELERSPLRDGNYLVRSLDAKVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ 'Potato leafroll virus SMI-5' GWGMEAFVRICLELERSPLRDGNYLVRSLDAKVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_SymlessLS10 GWGMEAFVRICLELERSPLRNGNYLVRSLDATVDYFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_T21 GWGMEAFVRICLELERSPLRDGNYLVRSLNAQVDHFVDHRSLMLNFARLYNQLLQGAKSFVATGYPYVTEDYQ Potato_leafroll_virus_TYTV2 GWGMEAFVRICLELERSPLRNGNYLVRSLDAQVDHFVDHRSLLLNFARLCNQLLQGARSFRATGIPYVYEDYQ Potato_leafroll_virus_US_CA GWGMEAFVRICLELERSPLRDGNYLVRSLDAEVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_VIRUBRA_1.045 GWGMEAFVRICLELERSPLRNGNYLVRSLDATVDYFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_VIRUBRA_1.046 GWGMEAFVRICLELERSPLRDGNYLVRSLDAKVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_VIRUBRA_1.047 GWGMEAFVRICLELERSPLRDGNYLVRSLDAEVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ 'Potato leafroll virus PLRV-YN' GWGMEAFVRICLELERSPLRDGNYLVRSLDAKVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Potato_leafroll_virus_Z7 GWGMEAFVRICLELERSPLRDGNYLVRSLDAEVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGYPYVSEDYQ Potato_leafroll_virus_Zim13 GWGMEAFVRICLELERSPLRDGNYLVRSLDAKVDHFVDHRSLMLNFARLYNQLLQGAKSFRATGFPYVSEDYQ Cereal_yellow_dwarf_virus_RPV GFGMESFLRLCFELPRSPLAPGPYLDRAFEATLGRMVGHNQLLLDITRYYNELVEGVPAFDAAGITHAGEEYP ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED (CHARACTERS = P0_alignment) = unord: 1 - 173; END; BEGIN CODONS; CODESET * UNTITLED (CHARACTERS = P0_alignment) = universal: 1 - 173; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED (CHARACTERS = P0_alignment) = 'Mk1 (est.)': 1 - 173; END; BEGIN TREES; Title P0_sequences_PLRV; LINK Taxa = Taxa; TRANSLATE [0] 1 Potato_leafroll_virus_14.1, [1] 2 Potato_leafroll_virus_14.2, [2] 3 Potato_leafroll_virus_1457, [3] 4 Potato_leafroll_virus_Ard912MR, [4] 5 Potato_leafroll_virus_Ard923A, [5] 6 Potato_leafroll_virus_Ard924A, [6] 7 Potato_leafroll_virus_Ard930A, [7] 8 Potato_leafroll_virus_ASL2000, [8] 9 Potato_leafroll_virus_Au16, [9] 10 Potato_leafroll_virus_Au40b, [10] 11 Potato_leafroll_virus_Au252, [11] 12 Potato_leafroll_virus_Br1, [12] 13 Potato_leafroll_virus_Canadian, [13] 14 Potato_leafroll_virus_CIP01, [14] 15 Potato_leafroll_virus_CU87, [15] 16 Potato_leafroll_virus_D33, [16] 17 Potato_leafroll_virus_Es4, [17] 18 Potato_leafroll_virus_Fr1, [18] 19 'Potato leafroll virus PLRV-HB', [19] 20 'Potato leafroll virus PLRV-IM', [20] 21 Potato_leafroll_virus_is4, [21] 22 Potato_leafroll_virus_is5, [22] 23 Potato_leafroll_virus_is6, [23] 24 Potato_leafroll_virus_is16, [24] 25 Potato_leafroll_virus_is24, [25] 26 Potato_leafroll_virus_is26, [26] 27 Potato_leafroll_virus_is29, [27] 28 Potato_leafroll_virus_is30, [28] 29 Potato_leafroll_virus_isSAM, [29] 30 Potato_leafroll_virus_JokerMV10, [30] 31 'Potato leafroll virus JPI-1', [31] 32 Potato_leafroll_virus_K5, [32] 33 Potato_leafroll_virus_Kerman, [33] 34 'Potato leafroll virus KHPI-1', [34] 35 Potato_leafroll_virus_L7, [35] 36 Potato_leafroll_virus_L13B, [36] 37 Potato_leafroll_virus_L13D, [37] 38 Potato_leafroll_virus_L18, [38] 39 Potato_leafroll_virus_Mah11, [39] 40 Potato_leafroll_virus_Mayo, [40] 41 Potato_leafroll_virus_NL, [41] 42 Potato_leafroll_virus_Noir, [42] 43 Potato_leafroll_virus_OP, [43] 44 'Potato leafroll virus OTNI-2', [44] 45 'Potato leafroll virus PBI-6', [45] 46 Potato_leafroll_virus_Australian, [46] 47 'Potato leafroll virus PLRV-Ar53', [47] 48 'Potato leafroll virus PLRV-Ar91', [48] 49 'Potato leafroll virus PLRV-Az36', [49] 50 'Potato leafroll virus PLRV-Az79', [50] 51 'Potato leafroll virus PLRV-Es18', [51] 52 'Potato leafroll virus PLRV-Es87', [52] 53 'Potato leafroll virus PLRV-Ha94', [53] 54 'Potato leafroll virus PLRV-Ha103', [54] 55 'Potato leafroll virus PLRV-Kh64', [55] 56 'Potato leafroll virus PLRV-Kh116', [56] 57 'Potato leaf roll virus PLRV-V', [57] 58 Potato_leafroll_virus_Poland, [58] 59 'Potato leafroll virus SMI-5', [59] 60 Potato_leafroll_virus_SymlessLS10, [60] 61 Potato_leafroll_virus_T21, [61] 62 Potato_leafroll_virus_TYTV2, [62] 63 Potato_leafroll_virus_US_CA, [63] 64 Potato_leafroll_virus_VIRUBRA_1.045, [64] 65 Potato_leafroll_virus_VIRUBRA_1.046, [65] 66 Potato_leafroll_virus_VIRUBRA_1.047, [66] 67 'Potato leafroll virus PLRV-YN', [67] 68 Potato_leafroll_virus_Z7, [68] 69 Potato_leafroll_virus_Zim13, [69] 70 Cereal_yellow_dwarf_virus_RPV; TREE P0_alignment_CYDV__out__tree = ((((((((((46,10:0.005599878207827307)80:0.013483007123651206,62:0.012739899126081661)21:0.0017478701705022706,((((((((((30:0.002714798786528985,60:0.0013297060723439112)7:0.00002055528205729268,21:0.0026776033554571006)6:0.00009437747281360043,24:0.001252651717225204)3:0.00004885793909486374,64:0.0026527226112061297)4:0.0000416877086458628,(37:0.005964544975972312,36:0.0035221904821122144)53:0.0013184284459799348)4:0.00019748148327233817,(((25:0.002466167720325818,28:0.0015783371385470783)37:0.0010178131110156266,27:0.00033081336016793595)43:0.0007072751124660367,26:0.0047124060324794225)43:0.001086499603487167)11:0.0003047310642854753,(8:0.005437967117113751,45:0.004040005477495501)61:0.0011092724351897654)22:0.000818620415224236,14:0.005923440610711316)30:0.0008150968990922464,1:0.0072729237196422405)91:0.02501805831186177,70:0.9461372777795221)31:0.00924759378005136)3:0.002687371779078483,(11:0.012160448040034284,9:0.0041797608552841346)61:0.006831358409299333)14:0.00512760470090148,13:0.013730968013692137)5:0.0013748249007696804,(61:0.020198711725828426,34:0.008624317332138403)12:0.0025898782790787127)11:0.001728255055052065,17:0.006174952021363023)0:0.0003219731814780969,((((((55:0.00041054565163622415,54:0.0009353501812194832)26:0.000639395781463669,(((49:0.00042216831134686203,51:0.0009237275215088453)32:0.000710063534768204,48:0.0006376486239509018)11:0.0002700595010312933,52:0.0004028884153965605)43:0.0008801933815500102)20:0.00012456213075978922,(((56:0.0,47:0.0)14:0.0,41:0.0)18:0.00008140839897089087,50:0.0012640345751233125)20:0.000633808917976116)13:0.0003004422530758352,53:0.00028784653190683674)74:0.004363803968065509,15:0.00788884400053474)14:0.0006416623200294928,((((6:0.004032835482789897,4:0.00001166937608299955)42:0.0011933214679200367,39:0.012417391389670707)31:0.0010434530915831549,(7:0.004063392739638939,5:0.0013361264986665412)82:0.0010193681763326773)43:0.0018468898177848216,42:0.005647092015273386)12:0.0005927736895604985)0:0.0004371052161085098)0:0.00020383897433357348,((29:0.005835837913988322,66:0.0077573842488786625)28:0.00028774365938637626,12:0.007905885935449955)13:0.0012567649899379379)0:0.00003185821753966809,(((57:0.008582618521809016,19:0.002263343982237608)19:0.0013449342550470242,59:0.0027239387860347533)3:0.0005744441946867148,(((63:0.0011321148546059672,43:0.00021378097824974011)29:0.0004429092505749731,((16:0.00903747586024808,68:0.0031927507059660125)24:0.0010769134752736439,(23:0.0,22:0.0)98:0.004372254421509729)5:0.0008983758074880166)0:0.00023031785506688694,(((((((35:0.0,3:0.0)99:0.00790424266134807,40:0.004341267342799807)70:0.002121247975760631,58:0.0005596719460317099)33:0.0009064237973150672,2:0.005221531257659746)23:0.001473390924056077,(44:0.004004068591077197,31:0.0013922486839515894)82:0.0019350520574676635)5:0.0003220778143323091,((32:0.01133025822204213,67:0.0022945630016456067)42:0.0011548600199464219,33:0.001547869006107483)18:0.0014153473716195812)1:0.00035779761524376476,((((69:0.00028525979839499546,18:0.002410164519043216)79:0.0023474050157420573,38:0.005803133170866354)78:0.0036855264527473775,20:0.007246723846634195)26:0.001132449923650078,65:0.0012047575981895186)3:0.0015349781971984587)0:0.0005966755095004431)0:0.0007636984975327636)0:0.00003185821753966809):0.0; TREE P0_alignment_CYDV__out__tree = ((46,10:0.005599878207827307)80:0.026706604103306525,62:0.025963496105736977,(30:0.005056207051014901,60:0.0036711143368298267,21:0.004998456337885723,24:0.0034791272268402266,64:0.004830340181726288,(37:0.005964544975972312,36:0.0035221904821122144)53:0.0034543583078542306,25:0.007216203925896606,28:0.006328373344117866,27:0.004063036454723097,26:0.007737354014568547,(8:0.005437967117113751,45:0.004040005477495501)61:0.002742989749506248,14:0.006738537509803562,1:0.0072729237196422405)91:0.04574137890106618,70:0.9668605983687265,(11:0.012160448040034284,9:0.0041797608552841346)61:0.015619713439373897,13:0.017391718342865223,61:0.025074515433310542,34:0.013500121039620519,17:0.006732622394714362,(55:0.0014749458169355176,54:0.0019997503465187766,49:0.0027074891125319937,51:0.003209048322693977,48:0.0022129058903678296,52:0.001708086180782195,56:0.0010156595700228422,47:0.0010156595700228422,41:0.0010156595700228422,50:0.002198285746175264,53:0.00028784653190683674)74:0.005678268696076754,15:0.009203308728545984,6:0.00938207595762016,4:0.005360909850913263,39:0.016573310396580936,(7:0.004063392739638939,5:0.0013361264986665412)82:0.004131834091659748,42:0.006912668112815636,29:0.007412204780852303,66:0.009333751115742644,12:0.00919450914292756,57:0.010533855189082423,19:0.004214580649511015,59:0.003330241198261136,63:0.002600898675320259,43:0.0016825647989640318,16:0.01203863971314906,68:0.006193914558866991,(23:0.0,22:0.0)98:0.0062965047991370635,((35:0.0,3:0.0)99:0.00790424266134807,40:0.004341267342799807)70:0.006573170351280724,58:0.005011594321551803,2:0.008767029835864772,(44:0.004004068591077197,31:0.0013922486839515894)82:0.004007159711616613,32:0.015650495453424774,67:0.006614800233028249,33:0.0047132462175437035,((69:0.00028525979839499546,18:0.002410164519043216)79:0.0023474050157420573,38:0.005803133170866354)78:0.007745186798168789,20:0.011306384192055607,65:0.004131968019960852):0.0; END;