#NEXUS [Collinsia cpDNA 3'matK+3'trnK intron] BEGIN DATA; DIMENSIONS NTAX=61 NCHAR=524; FORMAT DATATYPE=DNA MISSING=? GAP=- INTERLEAVE ; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Penstemon_hartwegii AAGTACTGTACGTGCTTTTTTCAAAAGATTAGGCTCGGAATTATTGGAAGAATTTCTTATGTCAGAAGAAGACGTTCTTTTTTTGACCTTCCCAAAAGCTTCTTCCACTTTGCGGGGAGTATCTAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GGTGAATTACAAATAAAAATTCTG------------AGACCTTGGAAA----------------------------TCG-AAATTTTTC--AAAAAAAA-TA-GAAAAAA----------------------------------------------------------------TGGAATTTCCACTATTATGAAATGTTGATATAGTATGTAA-TAAGGGTTAAATCAA-CTGAG------TATTCAACTTTTTAA---AGTTTTTCTAAGA-AAGGAAA-----TGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTTGGGGAGGGATTTTTCTTT [397] Chelone_glabra AAGTACTGTACGTGCTTTTTTGAAAAGATTAGGCTCGGAATTATTGGAAGAATTTCTTATGTCAGAAGAAGACGTTCTTTTTTTGACCTTCCCAAAAGCTTCTCCCACTTTGCGGGGAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GGTTAATTACAAATAAAAATTCTG------------AGATCTTGGAAA----------------------------TAT-AAATTTTTCCTAAAAAAA--TA-GAAAAAA----------------------------------------------------------------TGGGATTTCCACTATTATGAAATGTTGATATAGTATGTAAATAAGGGTTAAATCGA-CTGAG------TATTCAACTTTTTAA---AGTCTTTCTAAGA-AAGGAAA-----TGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTTGGGGAGGGATTTTTCTTT [399] Keckiella_cordifolia aagtactgtaCGTGCTTTTTTGAAAaGATTAGGCTCGGAATTATTGGAAGAATTTCTTATGTCAGAAGAAGACGTTCTTTTTTTGACCTTCCCAAAAGCTTCTTCCACTTTGCGGGGAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GGTTAATTACAAATAAAAATTATG------------AGaCCTTGGAAA----------------------------TAT-AAATTTTTCCTAAAAAAAAATA-TAAAAA-----------------------------------------------------------------TGGGATTTCCACTATTCTGAAATGTTGATATAGTATGTAA-TAAGGGTTAAATCAA-CTGAG------TATTCAACTTTTAAA---AGTCTTTCTAAGA-AAGGAAA-----TGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTtGGGGAGGGATTTttcttt [399] Tonella_tenella_1 AAGTACTGTACGCACTTTTTTGAAAAAATTAGGCTCGGAATTATTGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGCTTCGTCCATTTTGCGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GGTTAATTACAAATAAAAATTCTT------------AGACCTTGGAAA----------------------------TAT-AAGTTTTTCCTAAATAAA--CAA-AAAAA-----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAAGTAAGGGTTAAATTAA-TTGAG------TAGTCAACTTTTTTAA--AGTCTTTCTAAGA-AAGGAAA-----TGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTTGGGGAGAGGTTTTTCTTT [399] Tonella_tenella_4 AAGTACTGTACGCACTTTTTTGAAAAAATTAGGCTCGGAATTATTGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGCTTCGTCCATTTTGCGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GGTTAATTACAAATAAAAATTCTT------------AGACCTTGGAAA----------------------------TAT-AAGTTTTTCCTAAATAAA--CAA-AAAAA-----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAAGTAAGGGTTAAATTAA-TTGAG------TATTCAACTTTTTTAA--AGTTTTTCTAAGA-AAGGAAA-----TGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTTGGGGAGAGGtTTTTCTTT [399] Tonella_tenella_2_3 aagtACTGTACGCACTTTTTTGAAAAAATTAGGCTCGGAATTATTGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGCTTCGTCCATTTTGCGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GGTTAATTACAAATAAAAATTCTT------------AGACCTTGGAAA----------------------------TAT-AAGTTTTTCCTAAATAAA--CAA-AAAAA-----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAAGTAAGGGTTAAATTAA-TTGAG------TATTCAACTTTTTTAA--AGTCTTTCTAAGA-AAGGAAA-----TGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTTGGGGAGaggtttttcttt [399] Tonella_floribunda_1_2 AAGTACTGTACGCACTTTTTTGAAAAAATTAGGCTCGGAATTATTGGAAGAATTTCTTATATCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGCTTCGTCCATTTTGCGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GGTTAATTACAAATAAAAATTCTT------------AGACCTTGGAAA----------------------------TAT-AAGTTTTTCCT----------AA-AAAAA-----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAA-TAAGGGTTAAATTAA-TTGAG------TATTCAACTTTTTTAA--AGTCTTTCTAAGA-AAGGAAA-----TGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTTGGGGAGAGGTTTTTATTT [390] Collinsia_torreyi_1to4 AAGTACTGTACGCACTTTTTTGAAAAAATTAGGTTCGGAATTATTGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGTTTCGTCCGTTTTTCGGGTAGTATATAAAAGTAGGATTTGGTATTtGGATATTCTTTGtatCAGTGaTTt-GGTTAATtACAAATAAAAATTCTT------------AGACCTTGGAAA-----------------------GgAAATAT-AAGTTTTTCCTAACTAAa--CAAGAAAAA-----------------------------------------------------------------TAGGATCAaCaCTATTATGAAATGtTGATATAGTATGTAAATAAGGGTTAAATTAAGTTGAG------TATTCCACTTTTTTAA--AACATTTCTAAGA-AAGGAAA-----TGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTTGGGGAGAGATTTTTCTTT [406] Collinsia_wrightii_1a_b_12 aagTACTGTACGTACTTTTTTGAAAAAaTTAGGTTCGGAATTATGGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGTTTCGTCCGTTTTTCGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GCTTAATTACAAATAAAAATTCTTATAAAAATTTTTAGACCTTGGAAA-----------------------GGAAATAT-AAGTTGATCCTAAATAAA--CAAGAAAAA------------------------------------TAAGTTGATTCTAAATAAACAAGAAAAAATAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAA-TAAGGGTTAAATTAA-TCGAG------TATTCCGTTTTTTTTTT-AATCTTTCTAAGATAAGGAAA-----TGATGTATACATAGGGAAAGCTGTGTGCAATGAAAAATGCAAGCACGGTTtggggagagatttttcgtt [447] Collinsia_wrightii_2_6 aagtACTGTACGTACTTTTTTGAAAAAATTAGGTTCGGAATTATGGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGTTTCGTCCGTTTTTCGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GCTTAATTACAAATAAAAATTCTTATAAAAATTTTTAGACCTTGGAAA-----------------------GGAAATAT-AAGTTGATCCTAAATAAA--CAAGAAAAA------------------------------------TAAGTTGATTCTAAATAAACAAGAAAAAATAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAA-TAAGGGTTAAATTAA-TCGAG------TATTCTGTTTTTTTTTT-AATCTTTCTAAGATAAGGAAA-----TGATGTATACATAGGGAAAGCTGTGTGCAATGAAAAATGCAAGCACGGTttggggagagatttttcgtt [447] Collinsia_wrightii_9 aagtactGTACGTACTTTTTTGAAAAAaTTAGGTTCGGAATTATGGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGTTTCGTCCGTTTTTCGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GCTTAATTACAAATAAAAATTCTTATAAAAATTTTTAGACCTTGGAAA-----------------------GGAAATAT-AAGTTGATCCTAAATAAA--CAAGAAAAA------------------------------------TAAGTTGATTCTAAATAAACAAGAAAAAATAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAA-TAAGGGTTTAATTAA-TCGAG------TATTCCGTTTTTTTTTT-AATCTTTCTAAGATAAGGAAA-----TGATGTATACATAGGGAAAGCTGTGTGCAATGAAAAATGCAAGCACGGTTtggggagagatttttcgtt [447] Collinsia_wrightii_7 aagtactgtACGTAATTTTTTGAAAAAATTAGGTTCGGAATTATGGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGTTTCGTCCGTTTTTCGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GCTTAATTACAAATAAAAATTCTTATAAAAATTTTTAGACCTTGGAAA-----------------------GGAAATAT-AAGTTGATCCTAAATAAA--CAAGAAAAA------------------------------------TAAGTTGATTCTAAATAAACAAGAAAAAATAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAA-TAAGGGTTAAATTAA-TCGAG------TATTCCGTTTTTTTTTTTAATCTTTCTAAGATAAGGAAA-----TGATGTATACATAGGGAAAGCTGTGTGCAATGAAAAATGCAAGCACGgtttggggagagatttttcgtt [448] Collinsia_wrightii_8 AAGTACTGTACGTACTTTTTTGAAAAAATTAGGTTCGGAATTATGGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGTTTCGTCCGTTTTTCGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GCTTAATTACAAATAAAAATTCTTATAAAAATTTTTAGACCTTGGAAA-----------------------GGAAATAT-AAGTTGATCCTAAATAAA--CAAGAAAAA--------TAAGTTGATTCTAAATAAACAAGAAAAATAAGTTGATTCTAAATAAACAAGAAAAAATAGGATCAACMCTATTCTGAAATGTTGATATAGTATGTAA-TAAGGGTTAAATTAA-TCGAG------TATTCCGTTTTTTTTTT-AATCTTTCTAAGATAAGGAAA-----TGATGTAYACATAGGGAAASCTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN [475] Collinsia_wrightii_3_4_10_11 aagtactgtaCGTAATTTTTTGAAAAAaTTAGGTTCGGAATTATTGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGATCTTTCCAAAAGTTTCGTCCGTTTTTCGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTTTTTGTATCAGTGATTTTGCTTAATTACAAACAAAAATTCTTATAAAAATTTTTAGACCTTGGAAA-----------------------GGAAATAT-ATTTTTTTCCTAAATAAA--CAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAATTAAGGGTTAAATTAA-TCGAG------TCTTCCATTTTTTTTA--AATCTTTCTAAGA-AAGTAAA-----TGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCaCGGTTtgGGGAGAGatttttcttt [419] Collinsia_wrightii_5 AAGTACTGTACGTAATTTTTTGAAAAAATTAGGTTCGGAATTATTGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGATCTTTCCAAAAGTTTCGTCCGTTTTTCGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTTTTTGTATCAGTGATTTTGCTTAATTACAAACAAAAATTCTTATAAAAATTTTTAGACCTTGGAAA-----------------------GGAAATAT-ATTTTTTTCCTAAATAAA--CAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAATTAAGGGTTAAATTAA-TCGAG------TCTTCCATTTTTTTTT--AATCTTTCTAAGA-AAGTAAA-----TGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGTTTGGGGAGAGATTTTTCTTT [419] Collinsia_latifolia_1 aagtactgtacgcaCTTTTTTGAAAAAaTTAGGTTCGGAATTATTGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGTTTCGTCCGTTTTTCGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GGTTAATTACAAATAAAAATTCTT------------ACACTTTGGAAA-----------------------GGAAATAT-AAGTTTTTCCTAAATAAA--CAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTAATATAGTATGTAA-TAAGGGTTAAATTAA-TTGAG------TATTCCACTTTTTTAA--AATCGTTCTAAGA-AAGGAAA-----TGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTtgGGGAGAGATttttattt [405] Collinsia_latifolia_3_4 aagtactgtacGCACTTTTTTGAAAAAATTAGGTTCGGAATTATTGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGTTTCGTCCGTTTTTCGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTTATTT-GGTTAATTACAAATAAAAATTCTT------------AGACTTTGGAAA-----------------------GGAAATAT-AAGTTTTTCCTAAATAAA--CAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTAATATAGTATGTAA-TAAGGGTTAAATTAA-TTGAG------TATTCCACTTTTTTAA--AATCGTTCTAAGA-AAGGAAA-----TGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGcttggggagagatttttcttt [405] Collinsia_latifolia_2 AAGTACTGTACGCACTTTTTTGAAAAAATTAGGTTCGGAATTATTGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGTTTCGTCCGTTTTTCGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GGTTAATTACAAATAAAAATTCTT------------AGACTTTGGAAA-----------------------GGAAATAT-AAGTTTTTCCTAAATAAA--CAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTAATATAGTATGTAA-TAAGGGTTAAATTAA-TTGAG------TATTCCACTTTTTTAA--AATCGTTCTAAGA-AAGGAAA-----TGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTTGGGGAGAGATTTTTCTTT [405] Collinsia_rattanii_3_Collinsia_linearis_11 AAGTCCTGTACGTACTTTTTTGAAAAAATTAGGTTCGGAATTATTGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAACTTCGTCCATTTTTCGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTCTCAGTGATTT-GGTTA-TTACAAATAAAAATTCTT------------AGACTTTGGAAA-----------------------GGAAATCT-AAGTTTTTCTTAAATAAA--CAAGAAAAAA----------------------------------------------------------------TAGGATTAACACTATTCTGAAATGTTGATATAGTATGTAAGTAAGGGTTAAATTAA-TTGAG------TATTCCACTTTTTTA---AATCTTTCTAAGA-AAGGAAA-----TGATGTATACATAGGGAAAGCTGTGTGCAATGAAAAATGCAAGCACGGTTTGGGGAGAGATTTTTCTTT [404] Collinsia_rattanii_4 AAGTCCTGTACGTACTTTTTTGAAAAAATTAGGTTCGGAATTATTGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAACTTCGTCCATTTTTAGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTCTCAGTGATTT-GGTTA-TTACAAATAAAAATTCTT------------AGACTTTCGAAA-----------------------GGAAATCT-AAGTTTTTCTTAACTAAA--CAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAAGTAAGGGTTAAATTAA-TTGAG------TATTCCACTTTTTTA---AATCTTTCTAAGA-AAGGAAA-----TGATGTATACATAGGGAAAGCTGTGTGCAATGAAAAATGCAAGCACGGTTTGGGGAGAGATTTTTCTTT [404] Collinsia_rattanii_1_6to9_Collinsia_linearis_1_3to5_6_10_12_15to18_20 aagtcctgtACGTACTTTTTTGAAAAAATTAGGTTCGGAATTATTGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAACTTCGTCCATTTTTCGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTCTCAGTGATTT-GGTTA-TTACAAATAAAAATTCTT------------AGACTTTCGAAA-----------------------GGAAATCT-AAGTTTTTCTTAACTAAA--CAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAAGTAAGGGTTAAATTAA-TTGAG------TATTCCACTTTTTTA---AATCTTTCTAAGA-AAGGAAA-----TGATGTATACATAGGGAAAGCTGTGTGCAATGAAAAATGCAAGCACGGTttggggagagatttttcttt [404] Collinsia_rattanii_2_Collinsia_linearis_7 aagtcctGTACGTACTTTTTTGAAAAAaTTAGGTTCGGAATTATTGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTTCAAAAACTTCGTCCATTTTTCGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTCTCAGTGATTT-GGTTA-TTACAAATAAAAATTCTT------------AGACTTTGGAAA-----------------------GGAAATCT-AAGTTTTTCTTAAATAAA--CAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAAGTAAGGGTTAAATTAA-TTGAG------TATTCCACTTTTTTA---AATCTTTCTAAGA-AAGGAAA-----TGATGTATACATAGGGAAAGCTGTGTGCAATGAAAAATGCAAGCACGGtttggggagagatttttcttt [404] Collinsia_linearis_13_19 aagtcctgtACGTACTTTTTTGAAAAAaTTAGGTTCGGAATTATTGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAACTTCGTCCATTTTTCGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTCTCAGTGATTT-GGTTA-TTACAAATAAAAATTCTT------------AGACTTTCGAAAGGAAATCTAAGTTTTTCGAAA--GGAAATCT-AAGTTTTTCTTAACTAAA--CAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAAGTAAGGGTTAAATTAA-TTGAG------TATTCCACTTTTTTA---AATCTTTCTAAGA-AAGGAAA-----TGATGTATACATAGGGAAAGCTGTGTGCAATGAAAAATGCAAGCACGGTTtggggagagatttttcttt [425] Collinsia_linearis_2_9_14 aagtcCTGTACGTACTTTTTTGAAAAAATTAGGTTCGGAATTATTGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAACTTCGTCCATTTTTCGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTCTCAGTGATTT-GGTTA-TTACAAATAAAAATTCTT------------AGACTTTGGAAA-----------------------GGAAATCT-AAGTTTTTCTTAAATAAA--CAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAAGTAAGGGTTAAATTAA-TTGAG------TATTCCACTTTTTTA---AATCTTTCTAAGA-AAGGAAA-----TGATGTATACATAGGGAAAGCTGTGTGCAATGAAAAATGCAAGCACGGTttggggagagatttttcttt [404] Collinsia_linearis_8 aagtcctGTACGTACTTTTTTGAAAAAaTTAGGTTCGGAATTATTGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAACTTCGTCCATTTTTCGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTCTCAGTGATTT-GGTTA-TTACAAATAAAAATTCTT------------AGACTTTGGAAA-----------------------GGAAATCT-AAGTTTTTCTTAAATAAA--CAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAAGTAAGGGTTAAATTAA-TTGAG------TATTCCACTTTTTTA---AATCTTTCTAAGA-AAGGAAA-----TGATGTATACATAGGGAAAGCTGTGTGCAATGAAAAATGCAAGCACAGtttggggagagatttttcttt [404] Collinsia_parviflora_1_2_4to8_11to14_Collinsia_grandiflora_6 aaGTaCTGTaCGCACTTTTTTAAAAAAaTTAGGTTCGGAATTATTGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGCTTCGTCCTTTTTTAGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GGTTAATTACAAATAAAAATTCTT------------AGaCCTTGGAAA-----------------------GGAAATAT-AAGTTTTTCCTAAATAAa--CAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATACTGAAATGTTGATATAGTATGTAA-TAAGGGTTAAATTAA-TTGAA------TATTCTACTTTTTTT---AATCTTTCTAAGA-AAGGAAA-----TGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTtgGGGAGAGatttttcttt [404] Collinsia_parviflora_3_9_10 AAGTACTGTACGCAATTTTTTGAAAAAATTAGGTTCGGAATTATTGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGCTTCGTCCTTTTTTCGGGTAGTATATAAAAGTAGGATTTGGTATTtGGATATTCTTTGTAtCAGTGATTT-GGTTAATtACAAATAAAAATTCTT------------AGaCCTTGGAAA-----------------------GGAAATAT-AAGTTTTTCCTAAATAAa--CAAGAAAAAA----------------------------------------------------------------TAGGATCAaCACTATACTGAAATGTTGATATAGTATGTAA-TAAGGGTTAAATTAA-TTGAG------TATTCTACTTTTTTTT--AATCTTTCTAAGA-AAGGAAA-----TGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTtGGGGAGAGATTTtTCTTT [405] Collinsia_grandiflora_1to5 AAGTACTGTACGCAATTTTTTAAAAAAATTAGGTTCGGAATTATTGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGCTTCGTCCTTTTTTAGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GGTTAATTACAAATAAAAATTCTT------------AGACCTTAGAAA-----------------------GGAAATAT-AAGTTTTTCCTAAATAAA--CAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATACTGAAATGTTGATATAGTATGTAA-TAAGGGTTAAATTAA-TTGAA------TATTCTACTTTTTTT---AATCTTTCTAAGA-AAGGAAA-----TGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTTGGGGAGAGATTTTTCTTT [404] Collinsia_verna_1to3 AAGTACTGTACGCACTTTTTTGAAAAGATTGGGTTCGGAATTAGTGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTGTTTGATCCTTCCAAAAGCTTCGTCCATTTTTCGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCATTGATTT-GGTTAATTACAAATAAAAATTCTT------------AGACTTTGGAAA---------------------TAGGAAATAT-AAGTTTTTCCTAAATAAA--CAAGAAACAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAA-TAAGGGTTAAATTAA-TTGAG------TATTCCACTTTTTTAA--AATCTTTCTAAGA-AAGGAAA-----TGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTTGGGGAGAGATTTTTCTTT [407] Collinsia_violacea_1to3 AAGTACTGTACGCACTTTTTTGAAAAGATTGGGTTCGGAATTAGTGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCCTTCCAAAAGCTTCGTCCATTTTTCGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GGTTAATTACAAATAAAAATTCTT------------AGACTTTGGAAA---------------------TAGGAAATAT-AAGTTTTTCCTAAATAAA--CAAGAAACAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAA-TAAGGGTTAAATTAA-TTGAG------TATTCCACTTTTTTTA--AATCTTTCTAAGA-AAGGAAA-----TGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTTGGGGAGAGATTTTTCTTT [407] Collinsia_callosa_1to3 aagtaCTGTaCGCaCTTTTTTGAAAAAaTCAGGCTCGGGATTATTGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAGAGCTTTGTCCATTTTGGGGATAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GGTTAATTACAAATAAAAATTCTT------------AGACCTTGGAAA----------------------------TAT-AAGTTTTTCCTAAATAAA--CAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAATTAAGGGTTAAATTAA-TTGAGTATGAGTATTCAACTTTTAAAA--AGTCTTTCTAAGA-AAGGAAA-----TGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTtgGGGAGAGatttttcttt [407] Collinsia_childii_1_3to6 AAGTACTGTACGCACTTTTTTGAAAAAAACAGGCTCGGAATTATTGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGCTTTGTCCATTTTTGGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GGTTAATTACAAATAAAAATTCTT------------AGACCTTGGAAA----------------------------TAT-AAGTTTTTCCTAAATAAA--CAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTCATTAAGGGTTAAATTAA-TTGAGTATGAGTATTCAACTTTTTAAA--AGTCTTTCTAAGA-AAGGAAA-----TGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTTGGGGAGAGATTTTTCTTT [407] Collinsia_childii_2 aagtactgtacgcaCTTTTTTGAAAAAAaCAGGCTCGGAATTATTGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTtGACCTTTCCAAAAGCTTtGTCCATTTTtGGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTtGTATCAGTGATTT-GGTTAATTACAAATAAAAATTCTT------------AGACCTTGGAAA----------------------------TAT-AAGTTTTTCCTAAATAAA--CAATAAAAAATAAAAAA---------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTCATTAAGGGTTAAATTAA-TTGAGTATGAGTATTCAACTTTTTAAA--AGTCTTTCTAAGA-AAGGAAA-----TGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCaCGGCTtGGGGAGagatttttcttt [414] Collinsia_metamorphica_1_2 aagtactgtaCGCGCTTTTTTGAAAAAaTTAGGCTCGGAATTATTAGAAGAATTTCTTAGGTCAGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGCTTTGTCCATTTTGGGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GATTAATTACAAATAAAAATTCTT------------AGACCTTGGAAA----------------------------TAT-AAGTTTTTCCTAAATAAA--TAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAATTAAGGGTTAAATTAA-TTGAG------TATTCAACTTTTTTAA--AGTCTTTCTAAGA-AAGGAAA-----TGATGTATACCTAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTtgGGGAGAGatttttcttt [401] Collinsia_metamorphica_3to5 aagtactgtacgcGCTTTTTTGAAAAAATTAGGCTCGGAATTATTAGAAGAATTTCTTAGGTCAGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGCTTTGTCCATTTTGGGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GATTAATTACAAATAAAAATTCTT------------AGACCTTGGAAA----------------------------TAT-AAGTTTTTCCTAAATAAA--TAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAATTAAGGGTTAAATTAA-TTGAG------TATTCAACTTTTTTAA--AGTCTTTCTAAGA-AAGGAAA-----CGATGTATACCTAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGgcttggggagagatttttcttt [401] Collinsia_metamorphica_7_8 aagtactgtacGCGCTTTTTTGAAAAAaTTAGGCTTGGAATTATTAGAAGAATTTCTTAGGTCAGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGCTTTGTCCATTTTGGGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GATTAATTACAAATAAAAATTCTT------------AGACCTTGGAAA----------------------------TAT-AAGTTTTTCCTAAAAAAA--TAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAATTAAGGGTTAAATTAA-TTGAG------TATTCAACTTTTTTAA--AGTCTTTCTAAGA-AAGGAAA-----TGATGTATACCTAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCttggggagagatttttcttT [401] Collinsia_metamorphica_6 aagtactgtACGCGCTTTTTTGAAAAAATTAGGCTCGGAATTATTAGAAGAATTTCTTAGGTCAGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGCTTTGTCCATTTTTGGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GATTAATTACAAATAAAAATTCTT------------AGACCTTGGAAA----------------------------TAT-AAGTTTTTCCTAAATAAA--TAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAATTAAGGGTTAAATTAA-TTGAG------TATTCAACTTTTTTAA--AGTCTTTCTAAGA-AAGGAAA-----CGATGTATACCTAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCttggggagagatttttcttt [401] Collinsia_bartsiifolia_var_bartsiifolia_1to3_var_davidsonii_1to5_Collinsia_corymbosa_1to3 AAGTaCTGTaCGCGCTTTTTTGAAAAAATTAGGCTCGGAATTATTAGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGCTTTGTCCAGTTTTGGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GATTAATTACAAATAAAAATTCTT------------AGGCCTTATAAA----------------------------TAG-AAGTTTTTCCTAAATAAA--CAAGAAAAAA----------------------------------------------------------------TAGGATCAATACTATTCTGAAATGTTGATATAGTATGTAATTAAGGGTTAAATTAA-TTGAG------GATTCAACTTTTTTAA--AGTCTTTCTAAGA-AAGGAAA-----TGATGTATACCTAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTtGGGGAGAGATTTTTCTTT [401] Collinsia_tinctoria_5_6 AAGTaCTGTACGCGCTTTTTTGAAaAAATTAGGCTCGGAATTATTAGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGCTTTGTCCAGTTTTGGGGTAGTATATAGAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GATTAATTACAAATAAAAATTCTT------------AGGCCTTGGAAA----------------------------TAT-AAGTTTTTCCTAAATAAA--CAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAATTAAGGGTTAAATTAA-TTGAG------TATTCAACTTTTTTAA--AGTCTTTCTAAGA-AAGGAAA-----TGATGTATACCTAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTTGGGGAGAGATTTTTCTTT [401] Collinsia_tinctoria_2 AAGTACTGtACGCGCTTTTTTGAAAAAATTAGGCTCGGAATTATTAGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGCTTTGTCCAGTTTTGGGGTAGTATATAGAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GATTAATTACAAATAAAAATTCTT------------AGGCCTTGGAAA----------------------------TAT-AAGTTTTTCCTAAATAAA--CAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAATTAAGGGTTAAATTAA-TTGAG------TATTCAACTTTTTTAA--AGTTTTTCTAAGA-AAGGAAA-----TGATGTATACCTAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCtTGGGGAGAGATTTTTCTTT [401] Collinsia_tinctoria_3 AaGTACTGTACGCGCTTTTTTGAAAAAATTCGGCTCGGAATTATTAGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGCTTTGTCCAGTTTTGGGGTAGTATATAGAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GATTAATTACAAATAAAAATTCTT------------AGGCCTTGGAAA----------------------------TAT-AAGTTTTTCCTAAATAAA--CAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAATTAAGGGTTAAATTAA-TTGAG------TATTCAACTTTTTTAA--AGTCTTTCTAAGA-AAGGAAA-----TGATGTATACCTAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTTGGGGAGAGATTTTTCTTT [401] Collinsia_heterophylla_2to8_10to14_17_18_21_Collinsia_tinctoria_7 aagTACTGTACGCACTTTTTTGAAAAAaTCAGGCTCGAAATTATTGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGCTTTGTCCATTTTTGGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GGTTAATTACAAATAAAAATTCTT------------AGACCTTGGAAA----------------------------TATTAAGTTTTTTCTAAATAAA--CAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAATTAAGGGTTAAATTAA-TTGAGTATGAGTATTCAACTTTTTAAA--AGTCTTTCTAAGA-AAGGAAA-----TGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCttggggagagatttttcttt [408] Collinsia_tinctoria_1 AAGTaCTGTaCGCGCTTTTTtGAAAAAATTAGGCTCGGAATTATTAGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGCTTTGTCCAGTTTTGGGGTAGTATATAGAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GATTAATTACAAATAAAAATTCTT------------AGGCCTTGGAAA----------------------------TAT-AAGTTTTTCCGAAATAAa--CAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAATTAAGGGTTAAATTAA-TTGAG------TATTCAACTTTTTTAA--AGTCTTTCTAAGA-AAGGAAA-----TGATGTATACCTAGGGAAAGCCGTGTgCAATGAAAAATGCAAGCACGGCTTGGGgAGAGATTTTTCtTT [401] Collinsia_tinctoria_8 AAGTACTGTACGCGCTTTTTTGAAAAAATTAGGCTCGGAATTATTAGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGCTTTGTCCAGTTTTGGGGTAGTATATAGAAGTAGGGTTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GATTAATTACAAATAAAAATTCTT------------AGGCCTtGGAAA----------------------------TAT-AAGTTTTTCCTAAATAAa--CAAGAAAAAA----------------------------------------------------------------TAGGaTCAaCaCTATTCTGAAAtGTtGATATaGTAtGTAATtAAGGGTTAAATTAA-TtGAG------TATTCAaCTTTTTTAA--AGTCTTTCTAAGA-AAGGAAA-----TGATGTATACCTAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTTGGGGAGAGATTtTTCTTT [401] Collinsia_tinctoria_4 aagtactgtaCGCGCTTTTTTGAAAAAaTTAGGCTCGGAATTATTAGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGCTTTGTCCAGTTTTGGGGTAGTATATAGAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GATTAATTACAAATAAAAATTCTT------------AGGCCTTGGAAA----------------------------TAT-AAGTTTTTCCTAAATAAA--CAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAATTAAGGGTTAAATTAA-TTGAG------TATTCAACTTTTT-AA--AGTCTTTCTAAGA-AAGGAAA-----TGATGTATACCTAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCaCGGCTtgGGGAGAGatTTttcttt [400] Collinsia_greenei_1to4 AaGTACTGTACGCGCTTTTTTGAAAAAATTAGGCTCGGAATTATTAGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGCTTTGTCCAGTTTTGGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GATTAATTACAAATAAAAATTCTT------------AGGCTTTGGAAA----------------------------TAT-AAGTTTTTCCTAAATAAA--CAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAATTAAGGGTTAAATTAA-TTGAG------TATTCAACTTTTTAAA--AGTCTTTCTAAGA-AAGGAAA-----TGATGTATACCTAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTTGGGGAGAGAtTTTTCTTT [401] Collinsia_sparsiflora_var_sparsiflora_1to6_10_14_16_18to20 aagtactgtaCGCGCTTTTTTGAAAAAaTTAGGCTCGGAATTATTAGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGCTTTGTCCAGTTTTGGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GATTAATTACAAATAAAAATTCTT------------AGGCCTTGGAAA----------------------------TAT-AAGTTTTTCCTAAATAAA--CAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAATTAAGGGTTAAATTAA-TTGAG------TATTCAACTTTTTTAA--AGTCTTTCTAAGA-AAGGAAA-----TGATGTATACCTAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTtggGGAGAGatttttcttt [401] Collinsia_sparsiflora_var_sparsiflora_17 AAGTACTGTACGCGCTTTTTTGAAAAAATTAGGCTCGGAATTATTAGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGCTTTGTCCAGTTTTGGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GATTAATTACAAATAAAAATTCTT------------AGGCCTTGGAAA----------------------------TAT-AAGTTTTTCCTAAATAAA--CAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAATTAAGGGTTAAATTAA-TTGAG------TATTCAACTTTTTTAA--AGTCTTTCTAAGA-AAGGAAA-----TGATGTATACCTAGGGAAAGCCGTGTGCAATGAAAAAGGCAAGCACGGCTTGGGGAGAGATTtTTCTTT [401] Collinsia_sparsiflora_var_sparsiflora_9_11 aagtactgtaCGCGCTTTTTTGAAAAAaTCAGGCTCGGAATTATTAGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGCTTTGTCCAGTTTTGGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GATTAATTACAAATAAAAATTCTT------------AGGCCTTGGAAA----------------------------TAT-AAGTTTTTCCTAAATAAA--CAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAATTAAGGGTTAAATTAA-TTGAG------TATTCAACTTTTTTAA--AGTCTTTCTAAGA-AAGGAAA-----TGATGTATACCTAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCaCGGCTtgGGGAGAGattttTCTtt [401] Collinsia_sparsiflora_var_sparsiflora_7_8_12_13_15 aagtactgTACGCGCTTTTTTGAAAAAaTTAGGCTCGGAATTATTAGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACTTTTCCAAAAGCTTTGTCCAGTTTTGGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GATTAATTACAAATAAAAATTCTT------------AGGCCTTGGAAA----------------------------TAT-AAGTTTTTCCTAAATAAA--CAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAATTAAGGGTTAAATTAA-TTGAG------TATTCAACTTTTTTAA--AGTCTTTCTAAGA-AAGGAAA-----TGATGTATACCTAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGcttggggagagatttttcttt [401] Collinsia_sparsiflora_var_collina_5 AAGTACTGTACGCGCTTTTTTGAAAAAATTAGGCTCGGAATTATTAGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGCTTTGTCCAGTTTTGGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GATTAATTACAAATAAAAATTCTT------------AGGCCTTGGAAA----------------------------TAT-AAGTTTTTCCTAAATAAA--CAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAATTAAGGGTTAAATTAA-TTGAG------TATTCAACTTTTTTAA--AGTCTTTCTAAGA-AAGGAAA-----TGATGTATACCTAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTTGGGGAGAGATTTTCTTTT [401] Collinsia_multicolor_1_2 AAGTACTGTACGCGCTTTTTTGAAAAAATTAGGCTCGGAATTATTAGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGCTTTGTCCAGTTTTGGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATTAGTGATTT-GATTAATTACAAATAAAAATTCTT------------AGGCCTTGGAAA----------------------------TAT-AAGTTTTTCCTAAATAAA--CAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGT----AATTAAGGGTTAAATTAA-TTGAG------TATTCAACTTTTTTAA--AGTCTTTCTAAGA-AAGGAAA-----TGATGTATACCTAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTTGGGGAGAGATTTTTCTTT [397] Collinsia_antonina_1_3 AACTACTGTACGCACTTTTTTGAAAAAATCAGGCTCGGAATTATTGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACTTTTCCAAAAGCTTTGTCCATTTTTTGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GGTTAATTACAAATAAAAATTCTT------------AGACCTTGGAAA----------------------------TAT-AAGTTTTTCCTAAATAAA--CAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAATTAAGGGTTAAATTAA-TTGAGTATGAGTATTCAACTTTTTAAA--AGTCTTTCTAAGA-AAGGAAA-----TGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTTGGGGAGAGATTTTTCTTT [407] Collinsia_antonina_2 AACTaCtGtaCGCaCTTTTTTGAAAAAATCaGGcTcGGaATTATTGGAAGAATTTcTTATGTCGGAAgAAGACGTTCTTTTTTTGaCTTTTCCAAAAGCTTtGtCCATTTTtGGGGTaGTATATAAAAGTAGGATTtGGTATTtGGATATTCTTtGTAtCAGTGATTt-GGTTAATTaCAAATAAAAATTcTT------------AGaCCTtGGAAA----------------------------TAT-AAGTTTTTCcTAAaTAAa--CAAGAAAAAa----------------------------------------------------------------TaGGaTCaACaCTATTcTGAAAtGTTGATATaGTAtGTAATTAAGGGTTAAATTAA-TtGaGTATGaGTATTCAaCTTTTTAAA--AgTCTTTcTAAGA-AAGGAAA-----TGAtGTATaCaTAGGGAAAgCCGTGTgCAATGAAAAATgCAaGCaCGGCtTGGGgAGAGatTTTTCtTT [407] Collinsia_concolor_1_2_4_5_Collinsia_parryi_1_2 AAGTACTGTACGCGCTTTTTTGAAAAAATCAGGCTCGGAATTATTGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGCTTTGTCCATTTTGGGGGTAGTATATAAAAGTAGAATTTGGTATTtGGATaTTCTTTGtatCAGTGATTT-GGTTAATTaCAAATAAAAATTCTT------------AGACCTTGGAAA----------------------------TAT-AAGTTTTTCCTAAATAAA--CAAGAAAAAA----------------------------------------------------------------TAGGATCAaCACTATTCTGAAATGTTGATATAGTATGTAATTAAGGGTTAAATTAA-TTGAGTATGAGTATTCAACTTTTTAAA--AGTCTTTCTAAGA-AAGGAAA-----TGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTTGGGGAGAGATTTTTCTTT [407] Collinsia_concolor_3 AAGTACTGTACGCGCTTTTTTGAAAAAATCAGGCTCGGAATTATTGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGCTTTGTCCATTTTGGGGGTAGTATATAAAAGTAGAATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GGTTAATTACAAATAAAAATTCTT------------AGACCTTAGAAA----------------------------TAT-AAGTTTTTCCTAAATAAA--CAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAATTAAGGGTTAAATTAA-TTGAGTATGAGTATTCAACTTTTTAAA--AGTCTTTCTAAGA-AAGGAAA-----TGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTTGGGGAGAGA????????? [407] Collinsia_heterophylla_1 ????ACTGTACGCACTTTTTTGAAAAAATCAGGCTCGAAATTATTGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGCTTTGTCCATTTTTGGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGGGATTT-GGTTAATTACAAATAAAAATTCTT------------AGACCTTGGAAA----------------------------TATTAAGTTTTTTCTAAATAAA--CAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAATTAAGGGTTAAATTAA-TTGAGTATGAGTATTCAACTTTTTAAA--AGTCTTTCTAAGA-AAGGAAA-----TGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCTTGGGGAGAGATTTTTCTTT [408] Collinsia_heterophylla_19 aagTACTGTACGCACTTTTTTGAAAAAaTCAGGCTCGAAATTATTGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGCTTTGTCCATTTTTGGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GGTTAATTACAAATAAAAATTCTT------------AGACCTTGGAAA----------------------------TAGTAAGTTTTTTCTAAATAAA--CAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAATTAAGGGTTAAATTAA-TTGAGTATGAGTATTCAACTTTTTAAA--AGTCTTTCTAAGA-AAGGAAA-----TGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGCttggggagagatttttcttt [408] Collinsia_heterophylla_15 ??????????????????????????AATCAGGCTCGAAATTATTGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGCTTTGTCCATTTTTGGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GGTTAATTACAAATAAAAATTCTT------------AGACCTTGGAAA----------------------------TATTAAGTTTTTTCTAAATAAA--CAAGAAAAA-----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAATTAAGGGTTAAATTAA-TTGAGTATGAGTATTCAACTTTTTAAA--AGTCTTTCTAAGA-AAGGAAA-----TGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGcttggggagagatttttcttt [407] Collinsia_heterophylla_16 aagTACTGTACGTACTTTTTTGAAAAAATCAGGCTCGAAATTATTGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGCTTTGTCCATTTTTGGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GGTTAATTACAAATAAAAATTCTT------------AGACCTTGGAAA----------------------------TATTAAGTTTTTTCTAAATAAA--CAAGAAAAA-----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAATTAAGGGTTAAATTAA-TTGAGTATGAGTATTCAACTTTTTAAA--AGTCTTTCTAAGA-AAGGAAA-----TGATGTATACATAGGGAAAGCCGTGTGCAATGAAAAATGCAAGCACGGcttggggagagatttttcttt [407] Collinsia_heterophylla_9 aagtactgtacgcaCTTTTTTGAAAAAaTCAGGCTCGAAATTATTGGAAGAATTTCTTATGTCGGAAGAAGACGTTCTTTTTTTGACCTTTCCAAAAGCTTTGTCCATTTTTGGGGTAGTATATAAAAGTAGGATTTGGTATTTGGATATTCTTTGTATCAGTGATTT-GGTTAATTACAAATAAAAATTCTT------------AGACCTTGGAAA----------------------------TATTAAGTTTTTTCTAAATAAA--CAAGAAAAAA----------------------------------------------------------------TAGGATCAACACTATTCTGAAATGTTGATATAGTATGTAATTAAGGGTTAAATTAA-TTGAGTATGAGTATTCAACTTTTTAAA--AGTCTTTCTAAGA-AAGGAAAGGAAATGATGTATACATAGGGAAAGCCGTGTGCaATGAAAAATGCAAGCaCGGCTtGGGGAGAGatttttcttt [413] ; END; BEGIN mrbayes; lset nst=6 rates=gamma nucmodel=4by4; prset statefreqpr=dirichlet(1,1,1,1); mcmc ngen=10000000 nruns=2 nchains=4 samplefreq=1000 printfreq=100 temp=0.2 relburnin=yes burninfrac=0.25 stoprule=no savebrlens=yes; sump burnin=2500 nruns=2 printtofile=yes outputname=sumpoutput.out plot=Yes marglike=Yes table=Yes; sumt burnin=2500 nruns=2 ntrees=1 displaygeq=0.05 contype=Halfcompat; begin trees; [50% majority rule consensus of trees in posterior distribution for Collinsia cpDNA; Baldwin et al. 2011 AJB (Fig. 9)]] [Note: This MrBayes tree contains information on the topology, branch lengths (if present), and the probability of the partition indicated by the branch.] tree con_50_majrule = (Penstemon_hartwegii:0.317355,Chelone_glabra:0.162255,(Keckiella_cordifolia:0.158244,(((Tonella_tenella_1:0.076243,Tonella_tenella_4:0.075773,Tonella_tenella_2_3:0.038360,Tonella_floribunda_1_2:0.119033)0.83:0.077973,(((Collinsia_torreyi_1to4:0.226629,(Collinsia_latifolia_1:0.117226,Collinsia_latifolia_3_4:0.076063,Collinsia_latifolia_2:0.039070)1.00:0.153392)0.53:0.077936,(((Collinsia_wrightii_1a_b_12:0.025808,Collinsia_wrightii_2_6:0.052316,Collinsia_wrightii_9:0.051868,Collinsia_wrightii_7:0.042848,Collinsia_wrightii_8:0.026165)1.00:0.274596,(Collinsia_wrightii_3_4_10_11:0.070776,Collinsia_wrightii_5:0.036539)1.00:0.355337)1.00:0.272562,((Collinsia_parviflora_1_2_4to8_11to14_Collinsia_grandiflora_6:0.064502,Collinsia_grandiflora_1to5:0.094194)1.00:0.157749,Collinsia_parviflora_3_9_10:0.054360)1.00:0.185295)0.96:0.142185)0.87:0.100908,((Collinsia_rattanii_3_Collinsia_linearis_11:0.076863,(Collinsia_rattanii_4:0.075795,Collinsia_rattanii_1_6to9_Collinsia_linearis_1_3to5_6_10_12_15to18_20:0.037461,Collinsia_linearis_13_19:0.038285)1.00:0.116407,Collinsia_rattanii_2_Collinsia_linearis_7:0.076520,Collinsia_linearis_2_9_14:0.039565,Collinsia_linearis_8:0.077538)1.00:0.364926,(Collinsia_verna_1to3:0.149625,Collinsia_violacea_1to3:0.074612)1.00:0.243932)0.63:0.070683)1.00:0.204465)0.69:0.091372,(((Collinsia_callosa_1to3:0.195716,((Collinsia_childii_1_3to6:0.037725,Collinsia_childii_2:0.075689)1.00:0.115070,(Collinsia_heterophylla_2to8_10to14_17_18_21_Collinsia_tinctoria_7:0.037765,Collinsia_heterophylla_1:0.076060,Collinsia_heterophylla_19:0.074847,Collinsia_heterophylla_15:0.039130,Collinsia_heterophylla_16:0.072184,Collinsia_heterophylla_9:0.037684)1.00:0.115037,(Collinsia_antonina_1_3:0.075191,Collinsia_antonina_2:0.037836)1.00:0.115426)0.90:0.076754)0.65:0.070522,(Collinsia_concolor_1_2_4_5_Collinsia_parryi_1_2:0.038081,Collinsia_concolor_3:0.076515)0.98:0.088154)0.85:0.111252,((Collinsia_metamorphica_1_2:0.037768,(Collinsia_metamorphica_3to5:0.038823,Collinsia_metamorphica_6:0.077345)0.93:0.076452,Collinsia_metamorphica_7_8:0.116026)1.00:0.160116,(Collinsia_bartsiifolia_var_bartsiifolia_1to3_var_davidsonii_1to5_Collinsia_corymbosa_1to3:0.231674,(Collinsia_tinctoria_5_6:0.038262,Collinsia_tinctoria_2:0.076835,Collinsia_tinctoria_3:0.075895,Collinsia_tinctoria_1:0.075306,Collinsia_tinctoria_8:0.075906,Collinsia_tinctoria_4:0.037468)0.92:0.076218,Collinsia_greenei_1to4:0.113257,Collinsia_sparsiflora_var_sparsiflora_1to6_10_14_16_18to20:0.038205,Collinsia_sparsiflora_var_sparsiflora_17:0.075701,Collinsia_sparsiflora_var_sparsiflora_9_11:0.074613,Collinsia_sparsiflora_var_sparsiflora_7_8_12_13_15:0.076843,Collinsia_sparsiflora_var_collina_5:0.112792,Collinsia_multicolor_1_2:0.075069)0.98:0.152587)1.00:0.185529)0.99:0.162394)1.00:0.850323)0.81:0.077624); END;