NEXUS
[File created by TreeBASE:  7/26/07  20:56:51]
[Matrix accession#: M461]

BEGIN TAXA;
	TITLE M461;
	DIMENSIONS  NTAX=30;
	TAXLABELS
			Abroma_augusta	Herrania_kanukuensis	Theobroma_velutinum	Theobroma_angustifolium	Theobroma_mammosum	Theobroma_microcarpum_2	Theobroma_grandiflorum_2	Theobroma_grandiflorum_1	Theobroma_gileri_2	Theobroma_gileri_1	Theobroma_chocoense_1	Theobroma_bicolor_B	Theobroma_bicolor_A	Theobroma_cacao_B2	Theobroma_cacao_B1	Theobroma_cacao_C	Theobroma_cacao_A	Herrania_purpurea_2	Herrania_purpurea_1	Herrania_nycterodendron	Herrania_cuatrecasana	Herrania_umbratica	Herrania_nitida	Theobroma_microcarpum_1	Theobroma_speciosum	Guazuma_ulmifolia_2	Guazuma_ulmifolia_1	Theobroma_chocoense_2	Theobroma_simiarum
	;
END;

BEGIN CHARACTERS;
	TITLE M461;
	DIMENSIONS NCHAR=1220;
	FORMAT DATATYPE = DNA MISSING = ? GAP = -  ;
	MATRIX
		                                TGAAGAGGGCAAATTCAAGGTCCTCCAGAGGTTTGCTGAGAAATCACGTCTACTTAAGGGCATCGACAATTACCGCTTGGCCATGTTCGAAGCAAATCCCAACACTTTTGTTCTCCCACACCACTGTGATGCCGAGGCAATTCACTTTGTAACAAATGGTAAATT-TCTTC-CCTTTTGAACAAAATTGTGTTGGTTT-TATCACCAAATC--------ACTATTTGATTACAACATTGTAAATTATTT--GTGTCAGGAAAGGGGACAATCACGTTTGTGACTCATGAAAACAAAGAGTCCTATAATGTAGAATTTGGAACTGTCGTGAGMATTCCTGCAGGAAGCACCCTGTACTTGGTCAACCAAGACAAGGAAGAAAAGCTAAGGATAGCCGTGCTCGCCCTGCCTGTTAATATCCCTGGCAAATCTGAGGTTT-CTACTTGAACATCAACTTATTT--ACTATTA----ATTTCTAAATTTATAACCTTAAT---------------------------------TAGTGTCTTGGTTTGGCTATGTACATTAACCCTGTAMTT-GTATCTGCTGCAGGCCTTCTTCCCCGCAGGAAATGGAAATCCTCAGTCATATTTTCAAGTCTTCAGCTCTGAAATTCTTGAGACTGTTCTCAATGTATATGGTTCTTTAAC---TAGCTATGAATCAA----------------GTA-TTTAAGTTT-TCTTCGTATTTTGTTTATATATTAATTCATTTTTCTCTT--------------GTTAGACACCAAGAGAGAAGCTAGAGAAGCTCTTTGAGGGACAGAGAGGGCAGCAAAGGCAGCAGGG---------TGTATTCCGGAGAGCCAAACCAGAGCAGATCAGGGCAATGAGCCAACAAGCTACTTCGCCAAGGCCGAGAGAGGCGGAGAGACTTGCCATCAATCTAATGAGCCAATCGCCTGTCTACTCCAATCAAAACGGACGCTTCTTTGAGGCTTCTCCT---GAGGACTTCAGGCAACTTCAGAACATGGATGTCGCTGTTACAGCCTGCAAAATAAATCAGGTTACTTAAA------TCAAATGA---------TAATTTCAATAATTTCT----------------------TCATTAGAACTAATAGATGAGCTTCATTAATTTATGCTAATCAATCTTTTTTGCAGGGAGCAAT----------
		Abroma_augusta                  TGAAGAARGCA?RKYCAAKGTCCTTCAGAGGTTTGCTCAGAAGTCCCGTCTACTTAAGGGCATTGATAACTACCGCTTGGCCATGTTCGAAGCAAATCCCAACACTTTTGTTCTCCCACACCACTGTGATTCCGAGTCAATTTACTTTGTGACAAACGGTAAATTCTCTTTTCCTCTTGAACAAACTTTGGCCGCCTT-TATCACCTAAGGCCAAACAAACCATTTACTAAAAACATGGTAACTTCTTTCTGTGTCAGGAAAGGGGACAATCACGTTTGTGAATCATGAAAACAAAGAGTCCTATAATTTAGAGCGTGGAACTGTTGTGACAATTCCTGCTGGAAGCACTGTGTACTTGGTCAACCAAGGCAACAAAGAAAAGCTGACCATAGCCGTGCTAGCACTGCCTGTTAATACCCCTGGCAAATCTGAGGTTGA------------------------------------TTTCTA----CTTAACATTAATTTTCCAAACATTTTCTATCTTAATTTAGAAGCTTAGTCTCTTCGTCTCGCTA------TTAACCCTGGGCTTTATAATTGCTGCAGAAATTCTTCCCTGCTGGAAGTGGAAATCCTCAGTCATATTTCTCTGTCTTCAGTTSTGAAATTCTTGAGACTGTATTCAATGTATA--GTTCTTTGACCATGAAATATGAATCAA-------TTTTGTTTACTA-TCTCTCTTGTTCTTTTATTTAT--CTATTTATT----CATTTCTATCTTATTATTTTTCTCTTATTAGACACCAATAGAGAAGTTAGAGAAGCTCTTTGAGGGGCCGAGCGGGCAGCAGAGGCAGAAGAGTCAGAAGGGTGTATTCCGGAGAGCCAAGCCAGAGCAGATAAGGGCAATGAGCCAACAAGCTACTTCGCCAAGGCAGAGAGGCGGGGAGAAACTTGTTTTCAATCTATTGAGCCAATCACCTGTCCACTCCAACCAAAACGGACGCTTTTTTGAGGCTTGTCCC---GAGGAATTCAAGCAACTTCAGAACATGACTGTCTCAGTTACAGCATTAAAATTGAACCCGGTA-TTTGAAA-----CCAAATGA----------TTTTTCAATAATTTGA-----------------------------------TAGATTAGCTTCATGAATTTGTGCTGATCAATCCTTTT-TCAGGGATCAATATTTGTGCCA
		Herrania_kanukuensis            TGAAGAGGGCAACTTCAAGATCCTCCAGAGGTTTGCTGAGAACTCTAGTCCACTCAAGGGCATCAACGATTACCGCTTCGCCATTTTCGAAGCAAATCCCAACACTTTTGTTCTTCCACACCACTCTGATGCTGAGGCAATTTACTTCGTGACAAAGGGTAAATTCTCTTC-CCTTTTGAACAAAATTTTGCGGCTTT-TTTCACCAAATC--------ATCATTGATTGAAAACATGGTAAATTATTTCTGTGTCAGGAAAGGGGACAATTACGTTTGTGACTGATGAAAACAAGGAGTCCTATAATGTACAGCGTGGAACCGTAGTCAGCGTTCCTGCAGGATGCACTGTTTACGTGGTTAACCAAGACAAACAAGAGAAGCTAACCATAGCCGTGCTCGCCCTGCCTGTTAATACTCCTGGCAAATATGAGGTTTTCTACTTTAACATTTATTTATTATAAG----------TTTCTA----CATATCCTTGAT-------------------------------------GTCTTGGTTAGTCTA------TTGACCACGTACTT-ATAATTGCTGCAGGTGTTCTTCCCCGCTGGAAW?AATAAGCCTGAGTCATATTACAGAGCCTTCAGYTAWGAAGTTCTTGAGGCCGTCTTCAATGTAAATGGTT?TTT?AC---AAGCTATGAATCAA-----TTTTTTGTTTTTAC-TTTCTCTTG-TCTTTTACTTAT--TTATTTATTTATTCATTTTTATCTC----------GTTTGTTAGACACAAAGAGAGAAGCTGGAGAAGATCTTTGAGGAACAGAGAGGGCAGGAGGGGCAGCAGGG---------TATGTTCCGGAGAGCCAAACCAGAGCAGATAAGAGCAATGAGCCAACAAGCTACTTCGCCAGGGCAGAGAGGCGGGGAGAGTCTTGCCGTCAATCTATTTAGCCAATCGCCTGTCTACTCCAACCGAAACGGACGCTTCTTTGAGGTTTGTCCTACTGAGGCCTTCAGTCAATTTCAGAACATGGATGTCGCTGTTGCAGCCATCAAACTGAATCCGGTA-CTTAAAA-----TCAAATGA--------TTTTTTTCAATAATTTCATTAAAATCTTTCTCTTGTGTACTCA-TACTACTGCCAGATTAGCTTCATGAATGCATGCTCATGTATCCTTTT-GCAGGGAGCAATACTTGTGCCA
		Theobroma_velutinum             TGAAGAGGGCAACTTCAAGATCCTCCAGAGGTTTGCTGAGAACTCTCGTCAACTCAAGGGCATCAACGATTACCGCTTCGCCTTGTTCGAAGCAAATCCCAACACTTTTGTTCTTCCACACCACAGTGATGCTGAGGCAATTTACTTCGTGACAAAGGGTAAATTCTCTTC-CCTTTTGAACAAAATTTTGCAGCTTT-TAACACCAAATC--------CCTATTGATTGAAAACATGGTAAATTATTTCTGTGTCAGGAAAGGGGACAATTACGTTTGTGACTCATGAAAACAAAGAGTCCTATAATGTACAGCGTGGAACTGTAGTCAGCGTTCCTGCAGGAAGCACTGTTTACATGGTTAACCAAGACAACCAAGAGAAGCTGACCATAGCCGTTCTCGCTCGGCCTGTTAATACTCCTGGCAAATATGAGGTTTTCTACTTTAACATTTATTTACTATAAG----------TTTCTA----CATAACCTTGAT-------------------------------------GTCTTGGTTAGTCTA------TTGACCCTGTACTT-ATAATTGCTGCAGGTATTCTTCCCCGCTGGAAATAATAAACCTAAGTCATATTACCAAGCGTTCAGCTATGAAGTTCTTGAGACCGTCTTCAATGTATATGGTTCTTTGAC---TAGCTATGAATCAA-----TTTTTTGKTTTTAC-TTTCTCTTG-TCTTTTACTTAT--TTATTTATT----CATTTTTATCTT----------GTTTGTTAGACACAAAGAGAGAAGCTGGAGAAGATCTTGGAGGAACAGAGAGGGCAGAAGAGGCAGCAGGGGCAACAGGGTATGTTCAGGAGAGCCAAACCAGAGCAGATAAGAGCAATCAGCCAACAAGCTACTTCTCCAAGGCAGAGAGGCGGGGAGGGACTTGCCATCAATCTATTGAGCCAATCGCCTGTCTACTCCAACCAAAACGGACTCTTCTTTGAGGCTTGTCCT---GAGGACTTCAGTCGATTTCAGAACATGGATGTCGCTGTTGCAGCCTTCAAACTGAATCAGGTA-CTTAAAA-----TCAAATGA--------TTTTTTTCAATAATTTCATTAAAATTTTTCTC--GTCTACTCA-TACGACTACTAGATTAGCTTAATGAATATAAGCTCATGAATCCTTTT-GCAGGGAGCAATATTTGTGCCA
		Theobroma_angustifolium         TGAAGAGGGCAACTTCAAGATCCTCCAGAGGTTTAATGAGAACTCTCCTCCACTCAAGGGCATCAACGATTACCGCTTGGCCATGTTCGAAGCAAATCCCAACACTTTTATTCTTCCACACCACTGTGATGCTGAGGCAATTTACTTCGTGACAAACGGTAAATTCTCTTC-CCTTTCGAACAAAATTTTGCGGCTTT-TTTCACCAAATC--------ACCATCGATTGAAAACATGGTAAATTATTTCTCTGTCAGGAAAGGGGACAATTACGTTTGTGACTCATGAAAACAAAGAGTCCTATAATGTACAGCGTGGAACAGTAGTCAGCGTTCCTGCARGATGCACTGTTTACGTGGTTAACCAAGACAACCAAGAGAAGCTAACCATAGCTGTGCTCGCCCTGCCTGTTAATACTCCTGGCAAATATGARGTTTTCTACTTTAACATTTATTTATTATAAG----------TTTCTA----CATAACCTTGAT-------------------------------------GTCTTGATTAGTCCA------TTGACCCTGTGCTT-ATAATTGCTGCAGGTATTCTTCCCCGCTGGAAATAATGAACCTGAGTCATATTACCGAGGCTTCAGCTATAAAGTTCTTGAGACCGTCTTCAATGTATATGGTTCTTTGAC---TAGCTATGAATCAA-----TGTTTTGTTTTTAC-TTTCTCTTG-TCTTTTACTTAT--TTATTTATT----CATTTTTATCTT----------GTTTGTTAGACACAAAGAGAGAAGCTGGAGAAGATCTTTGAGGAACAGAGAGGGCAGCAGGGGCAGCGGGG---------TATGTTCCGGAGAGCCAAACCAGAGCAGATAAGGGCAATGAGCCAACAAGCTACTTCTCCAAGGCAGAGAGGCGGGGAGAGACTTGCCATCAATCTACTGAGCCAATCGCCTGTCTACTGCAACCAAAACGGACGCTTCTTTGAGGCTCGTCCT---GAGGACTTCAGTCAATTTKAGAACATGGATGTCTCTGTTGCAGCCTTCAAACTGAATCAGGTA-CTTAAAA-----TCAAATGA---------TTTTTTCAATAATTTCATTAAAACTTTTGTCTTGTCTTCTCA-TACGACTACTAGATTAGCTTCATGAATATAAGCTCATGAATCCTTTT-GCAGGGAGCAATATTTGTGCCA
		Theobroma_mammosum              TGAAGAGGGCAACTTCAAGATCCTCCAGAGGTTTGATGAGAACTCTCCTCCACTCAAGGGCATCAACGATTACCGCTTGGCCATGTTCGAAGCAAATCCCAACACTTTTATTCTTCCACACCACTGTGATGCTGAGGCAATTTACTTCGTGACAAACGGTAAATTCTCTTC-CCTTTCGAACAAAATTTTGCGGCTTT-TTTCACCAAATC--------ACCATCGATTGAAAACATGGTAAATTATTTCTCTGTCAGGAAAGGGGACAATTACGTTTGTGACTCATGAAAACAAAGAGTCCTATAATGTACAGCGTGGAACAGTAGTCMGCGTTCCTGCAGGATGCACTGTTTACGTGGTTAACCAAGACAACCAAGAGAAGCTAACCATAGCTGTGCTCGCCCTGCCTGTTAATACTCCTGGCAAATATGAGGTTTTCTACTTTAACATTTATTTATTATAAG----------TTTCTA----CATAACCTTGAT-------------------------------------GTCTTGATTAGTTCA------TTGACCCTGTACTT-ATAATTGCTGCAGGTATTCTTCCCCGCTGGAAATAATGAACCTGAGTCATATTACCGAGGCTTCAGCTATAAAGTTCTTGAGACCGTCTTCAATGTATATGGTTCTTYGAC---TAGCTATGAATCAA-----TGTTTTGTTTTTAC-TTTCTCTTG-TCTTTTACTTAT--TTATTTATT----CATTTTTATCTT----------GTTTGTTAGACACAAAGAGAGAAGCTGGAGAAGATCTTTGAGGAACATAGAGGGCAGCAGGGGCAGCGGGG---------TATGTTCCGGAGAGCCAAACCAGAGCAGATAAGGGCAATGAGCCAACAAGCTACTTCTCCAAGGCAGAGAGGCGGGGAGAGACTTGCCATCAATCTACTGAGCCAATCGCCTGTCTACTGCAACCAAAACGGACGCTTCTTTGAGGCTCGTCCT---GAGGATTTCAGTCAATTTCAGAACATGGATGTCTCTGTTGCAGCCTTCAAACTGAATCAGGTA-CTTAAAA-----TCAAATGA---------TTTTTTCAATAATTTCATTAAAACTTTTGTCTTGTCTACTCA-TACGACTACTAGATTAGCTTCATGAATATGAGCTCATGAATCCTTTT-GCAGGGAGCAATATTTGTGCCA
		Theobroma_microcarpum_2         TGAAGAGGGCAACTTCAAGATCCTCCAGAGGTTTGCTGAGAACTCTCCGCCACTCAAGGGAATCAACGATTACCGCTTGGCCATTTTCGAAGCAAATCCCAACACTTTTATTCTTCCACACCACTGTGATGCTGAGGCAATCTACTTCGTGACAAAAGGTAAATTGTCTTC-CCTTTCGAACAAAATTTTGCGGCTTT-TATCACCAAATC--------ACCATTGATTGAAAACATGGTAAATTATTTCTGTGTCWSGAAAGGGGACAATTACGTTTGTGACTCATGAAAACAAAGAGTCCTATAATGTACAGCGTGGAACAGTAATCAGTGTTCCTGCARGAAGCACTGTTTACGTGGTTAACCAAGACAACCAAGAGAAGCTAACCATAGCTGTGCTCGCCCTGCCTGTTAATACTCCTGGCAAATATGARGTTTTCTACTTTAACATTTATTTATTATAAG----------TTTCTA----CATAACCTTGAT-------------------------------------GTCTTGGTTAGTCTA------TTGACCCTGTACTT-ATAATTGCTGCAGGTATTCTTCCCCGCTGGAAATAATGAACCTATGTCTTATTACCGAGCCTTCAGCTATGAAGTTCTTGAGGCCGTCTTCAATGTATATGGTTCTTTGAC---TAGCTATGAATCGA-----TTTTTTGCTTT?AC-TTTCTCTTG-TGTTCTACTTAT--TTATTTATTTATTCATTTTTATCTT----------GTTTTTCAGACACGAAGAGAGAAGCTGGAGAAGATCTATGAGGAACAGAGAGGCCAGCAGAAGCAGCAGGG---------TATGTTCCGGAGAGCCAAACCAGAGCAGATAAAAGCAATAAGCCAACAAGCTACTTCTCCAAGGCAGAGAGGCGGGGAGAGCCTTGCCATCAATCTATTGAGCCAATCGCCTGT?TACTCCAACCAAAATGGACGCTTCTTTGAGGCTCGTCCT---GAGAACTTCAGTCAATTTCAGAACGTGGATGTCTCTGTTGCAGCCTTCAAAGTGAATCAGGTA-CTTAAAA-----TCAAATGA--------TTTTTTTCAATAATTTCATTAAAATTTTTCTCTTGTCTGCTCA-TACGACTACTAGATTAGCTTCGTGAATATAAGCTCATGAATCCTATT-GCAGGGAGCAATATTGGTGCCA
		Theobroma_grandiflorum_2        TGAAGAGGGCAACTTCAAGATCCTCCAGAGGTTTGCTGAGAACTCTCCT---CTCAAGGGCATCAACGATTACCGCTTGGCTATGTTCGAAGCAAATCCCAACACTTTTATTCTTCCACACCACTGTGATGCTGAGGCAATTTACTTCGTGACAAACGGTAAATTCTCTTC-CCTTTCGAACAAAATTTTGCGGCTTT-TTTCACCAAATC--------ACCATCGATTGAAAACATGGTAAATTATTTCTCTGTCAGGAAAGGGGACAATTACGTTTGTGACTCATGAAAACAAAGAGTCCTATAATGTACAGCGTGGAACAGTAGTCAGCGTTCCTGCAGGATGCACTGTTTACGTGGTTAACCAAGACAACCAAGAGAAGCTAACCATAGCTGTGCTCGCCCTGCCTGTTAATACTCCTGGCAAATATGAGGTTTTCTACTTTAACATTTATTTATTATACG----------TTTCTA----CATAACCCTGAT-------------------------------------GTCTTGATTAGTCCA------TTGACCCTGTACTT-ATAATTGCTGCAGGTATTCTTCCCCGCTGGAAATAATGAACCCGAGTCATATTACAGAGGCTTCAGCTATAAAGTTCTTGAGACCGTCTTCAATGTATATGGTTCTTTGAC---TAGCTATGAATCAA-----TTTTTTGTTTTTAC-TTTTTCTTG-TCTTTTACTTAT--TTATTTATTTATTCATTTTTATCTT----------GTTTGTTAGACACGAAGAGAGAAGCTGGAGAAGATCTTTGAGGACCAGAGAGGGCAGCAGGGGCAGCAGGG---------TATGTTCCGGAGAGCCAAACCAGAGCAGATAAGAGCAATGAGCCAACAAGCTACTTCTCCAAGGCAGAGAGGCGGGGAGAGACTTGCCGTCAATCTATTGAGCCAATCGCCTGTCTACTGCAACCAAAACGGACGCTTCTTTGAGGCTCGTCCT---GAGGACTTCAGTCAATTTCAGAACATGGATGTCTCTGTTGCAGCGTTCAGACTGAATCAGGTA-CTTAAAA-----TCAAATGA---------TTTTTTCAATAATTTCATTCAAATTTTTCTCTTGTCTACTCA-TACGACTACTAGATTAGCTTCATGAATATAAGCTCATGAATCCTTTT-GCAGGGAGCAATATTTGTACCA
		Theobroma_grandiflorum_1        TGAAGAGGGCAACTTCAAGATCCTCCAGAGGTTTGCTGAGAACTCTCCT---CTCAAGGGCATCAACGATTACCGCTTGGCTATGTTCGAAGCAAATCCCAACACTTTTATTCTTCCACACCACTGTGATGCTGAGGCAATTTACTTCGTGACAAACGGTAAATTCTCTTC-CCTTTCGAACAAAATTTTGCGGCTTT-TTTCACCAAATC--------ACCATCGATTGAAAACATGGTAAATTATTTCTCTGTCAGGAAAGGGGACAATTACGTTTGTGACTCATGAAAACAAAGAGTCCTATAATGTACAGCGTGGAACAGTAGTCAGCGTTCCTGCAGGATGCACTGTTTACGTGGTTAACCAAGACAACCAAGAGAAGCTAACCATAGCTGTGCTCGCCCTGCCTGTTAATACCCCTGGCAAATATGAGGTTCTCTACTTTAACATTTATTTATTATACG----------TTTCTA----CATAACCCTGAT-------------------------------------GTCTTGATTAGTCCA------TTGACCCTGTACTT-ATAATTGCTGCAGGTATTCTTCCCCGCTGGAAATAATGAACCCGAGTCTTATTACAGAGGCTTCAGCTATWAAGTTCTTGAGACCGTCTTCAATGTATATGGTTCTTTGAC---TAGCTATGAATCAA-----TTTTTTGTTTTTAC-TTTTTCTTG-TCTTTTACTTAT--TTATTTATTTATTCATTTTTATCTT----------GTTTGTTAGACACGAAGAGAGAAGCTGGAGAAGATCTTTGAGGACCAGAGAGGGCAGCAGGGGCAGCAGGG---------TATGTTCCGGAGAGCCAAACCAAAGCAGATAAGAGCAATGAGCCAACAAGCTACTTCTCCAAGGCAGAGAGGCGGGGAGAGACTTGCCGTCAATCTATTGAGCCAATCGCCTGTCTACTGCAACCAAAACGGACGCTTCTTTGAGGCTCGTCCT---GAGGACTTCAGTCAATTTCAGAACATGGATGTCTCTGTTGCAGCGTTCAGACTGAATCAGGTA-CTTAAAA-----TCAAATGA---------TTTTTTCAATAATTTCATTCAAATTTTTCTCTTGTCTACTCA-TACGACTACTAGATTAGCTTCATGAATATAAGCTCATGAATCCTTTT-GCAGGGAGCAATATTTGTACCA
		Theobroma_gileri_2              TGAAGAGGGCAACTTCAAGATCCTCCAGAGGTTTGCTGAGAACTCTCCTCCACTCAAGGGAATCAACGATTACCGCTTGGCCATTTTCGAAGCAAATCCCAACACTTTTATTCTTCCACACCACTGTGATGCTGAGGCAATTTACTTCGTGACAAAAGGTAAATTGTCTTC-CCTTTCGAACAAAATTTTGCGGCTTT-TATCACCAAATC--------ACCATTGATTGAAAACATGGTAAATTATTTCTGTGTCAGGAAAGGGGACAATTACGTTTGTGACTCATGAAAACAAAGAGTCCTATAATGTACAGCGTGGAACAGTAGTCAGTGTTCCTGCAGGAAGCACTGTTTACGTGGTTAACCAAGACAACCAAGAGAAGCTAACCATAGCTGTGCTCGCCCTGCCTGTTAATACTCCTGGCAAATATGAGGTTTTCTACTTTAACATTTATTTATTGTAAG----------TTTCTA----CATAACCGTGAT-------------------------------------GTCTTGGTTAGTCTA------TTGACCCTGTACTT-ATAATTGCTGCAGGTATTCTTCCCCGCTGGAAATAATGAACCTATGTCATATTACCGAGCCTTCAGCTATGAAGTTCTTGAGGCCGTCTTCAATGTATATGGTTCTTTGCT---TAGCTATGAATCGA-----TTTTTTGCTTTTAC-TTTCTCTTG-TCTTCTACTTAT--TTATTTATTTATTCATTTTTATCTT----------GTTTTTCAGACACGAAGAGAGAAGCTGGAGAAGATCTTTGAGGAACAGAGAGGCCAGCAGAAGCAGCAGGG---------TATGTTCCGGAGAGCCAAACCAGAGCAGATAAAAGCAATAAGCCAACAAGCTACTTCTCCAAGGCAGAGAGGCGGGGAGAGCCTTGCCATCAATCTATTGAGCCAATCGCCTGTCTACTCCAACCAAAACGGACGCTTCTTTGAGGCTCGTCCT---GAGAACTTCAGTCAATTTCAGAACGTGGATGTCTCTGTTGCAGCCTTCAAAGTGAATCAGGTA-CTTAAAA-----TCAAATGA--------TTTTTTTCAATAATTTCATTAAAATTTTTCTCTTGTCTACTCW-TACGACTACTAGATTAGCTTCGTGAATATAAGCTCATGAATCCTATT-GCAGGGAGCAATATTGGTGCCA
		Theobroma_gileri_1              TGAAGAGGGCAACTTCAAGATCCTCCAGAGGTTTGCTGAGAACTCTCCTCCACTCAAGGAAATCAACGATTACCGCTTGGCCATTTTCGAAGCAAATCCCAACACTTTTATTCTTCCACACCACTGTGATGCTGAGGCAATTTACTTCGTGACAAAAGGTAAATTGTCTTC-CCTTTCGAACAAAATTTTGCGGCTTT-TATCACCAAATC--------ACCATTGATTGAAAACATGGTAAATTATTTCTGTGTCAGGAAAGGGGACAATTACGTTTGTGACTCATGAAAACAAAGAGTCCTATAATGTACAGCGTGGAACAGTAGTCAGTGTTCCTGCAGGAAGCACCGTTTACGTGGTTAACCAAGACAACCAAGAGAAGCTAACCATAGCTGTGCTCGCCCTGCCTGTTAATACTCCTGGCAAATATGAGGTTTTCTACTTTAACATTTATTTATTGTAAG----------TTTCTA----CATAACCGTGAT-------------------------------------GTCTTGGTTAGTCTA------TTGACCCTGTACTT-ATAATTGCTGCAGGTATTCTTCCCCGCTGGAAATAATGAACCTATGTCATATTACCGAGCCTTCAGCTATGAAGTTCTCGAGGCCGTCTTCAATGTATATGGTTCTTTGCT---TAGCTATGAATCGA-----TTTTTTGCTTTTAC-TTTCTCTCG-TCTTCTACTTAT--TAATTTATTTATTCATTTTTATCTT----------GTTTTTCAGACACGAAGAGAGAAGCTGGAGAAGATCTTTGAGGAACAGAGAGGCCAGCAGAAGCAGCAGGG---------TATGTTCCGGAGAGCCAAACCAGAGCAGATAAAAGCAATAAGCCAACAAGCTACTTCTCCAAGGCAGAGAGGCGGGGAGAGCCTTGCCATCAATCTATTGAGCCAATCGCCTGTCTACTCCAACCAAAACGGACGCTTCTTTGAGGCTCGTCCT---GAGAACTTCAGTCAATTTCAGAACGTGGATGTCTCTGTTGCAGCCTTCAAAGTGAATCAGGTA-CTTAAAA-----TCAAATGA--------TTTTTTTCAATAATTTCATTAAAATTTTTCTCTTGTCTACTTA-TACGACTACTAGATTAGCTTCGTGAATATAAGCTCATGAATCTTATT-GCAGGGAGCAATATTGGTGCCA
		Theobroma_chocoense_1           TGAAGAGGGCAACTTCAAGATCCTCCAGAGGTTTGATGAGAACTCTCCTCTACTCAAGGGCATCAACGATTACCGCTTGGCCATGTTCGAAGCAAATCCCAACACTTTTATTCTTCCACACCACTGTGATGCTGAGGCAATTTACTTCGTGACAAACGGTAAATTCTCTTC-CCTTTCGAACAAAATTTTGCGGCTTT-TTTCACCAAATC--------ACCATCGATTGAAAACATGGTAAATTATTTCTGT--CAGGAAAGGGGACAATTACGTTTGTGACTCATGAAAACAAAGAGTCCTATAATGTACAGCGTGGAACAGTAGTCAGCGTTCCTGCAGGATGCACTGTTTACGTGGTTAACCAAGACAACCAAGAGAAGCTAACCATAGCTGTGCTCGCCCTGCCTGTTAATACTCCTGGCAAATATGAGGTTTTCTACTTTAACATTTATTTATTATAAG----------TTTCTA----CATAACCTTGAT-------------------------------------GTCTTGATTAGTCCA------TTGACCCTGTACTT-ATAATTGCTGCAGGTATTCTTCCCCGCTGGAAATAATGGACCTGAGTCATATTACCGAGGCTTCAGCTATAAAGTTCTTGAGACCGTCTTCAATGTATATGGTTCTTTGAC---TAGCTATGAATCAA-----TGTTTTGTTTTTAC-GTTCTCTTG-TCTTTTACTTAT--TTATTTATTTATTCATTTTTATCTT----------GTTTGTTAGACACGAAGAGAGAAGCTGGAGAAGATCTTTGAGGAACAGAGAGGGCAGCAGGGGCAGCGGGG---------TATGTTCCGGAGAGCCAAACCAGAGCAGATAAGAGCAATGAGCCAACAAGCTACTTCTCCAAGGCAGAGAGGCGGGGAGAGACTTGCCATCAATCTACTGAGCCAATCGCCTGTCTACTGCAACCAAAACGGACGCTTCTTTGAGGCTCGTCCT---GAGGACTTCAGTCAATTTCAGAACATGGATGTCTCTGTTGCAGCCTTCAAACTGAATCAGGTA-CTTAAAA-----TCAAATGA---------TTTTTTCAATAATTTCATTAAAACTTTTCTCTTGTCTACTCA-TACGACTACTAGATTAGCTTCATGAATATAAGCTCATGAATCCTTTT-GCAGGGAGCAATATTTGTGCCA
		Theobroma_bicolor_B             TGAAGAGGGCAACTTCAAGATCCTCCAGAGGTTTGCTGAGAACTCTCGTCAACTCAAGGGCATCAACGATTACCGCTTCGCCTTGTTCGAAGCAAATCCCAACACTTTTGTTCTTCCACACCACAGTGATGCTGAGGCAATTTACTTCGTGACAAAGGGTAAATTCTCTTC-CCTTTTGAACAAAATTTTGCAGCTTT-TAACACCAAATC--------CCCATTGATTGAAAACATGGTAAATTATTTCTGTGTCAGGAAAGGGGACAATTACGTTTGTGACTCATGAAAACAAAGAGTCCTATAATGTACAGCGTGGAACTGTAGTCAGCGTTCCTGCAGGAAGCACTGTTTACGTGGTTAACCAAGACAACCAAGAGAAGCTAATCATAGCCGTTCTCGCTCTGCCTGTTAATACTCCTGGCAAATATGAGGTTTTCTACTTTAACATTTATTTACTATAAG----------TTTCTA----CATAACCTTGAT-------------------------------------GTCTTGGTTAGTCTA------TTGACCCTGTACTT-ATAATTGCTGCAGGTATTCTTCCCCGCTGGAAATAATAAACCTGAGTCATATTACCGAGCGTTCAGCTATGAAGTTCTTGAGACCGTCTTCAATGTATATGGTTCTTTGAC---TAGCTATGAATCAA-----TTTTTGGTTTTTAC-TTTCTCTTG-TCTTTTATTTAT--TTATTTATT----CATTTTTATCTT----------GTTTGTTAGACACTAAGAGAGAAGCTGGAGAAGATCTTGGAGGAACAGAGAGGGCAGAAGAGGCAGCAGGGGCAACAGGGTATGTTCCGGAGAGCCAAACCAGAGCAGATAAGAGCAATAAGCCAACAAGCTACTTCTCCAAGGCAGAAAGGCGGGGAGAGACTTGCCATCAATCTATTGAGCCAATCGCCTGTCTACTCCAACCAAAACGGACGCTTCTTTGAGGTTTGTCCT---GAGGACTTCAGTCAATTTCAGAACATGGATGTCGCTGTTGCAGCCTTCAAACTGAATCAGGTA-CTTAAAA-----TCAAATGA--------TTTTTTTCAATAATTTCATTAAAATTTTTCTCTTGTCTACTCA-TACGACTACTAGATTAGCTTCATGAATATAAGCTCATGAATCCTTTT-GCAGGGAGCMATATTTGTGCCA
		Theobroma_bicolor_A             TGAAGAGGGCAACTTCAAGATCCTCCAGAGGTTTGCTGAGAACTCTCGTCAACTCAAGGGCATCAACGATTACCGCTTCGCCTTGTTCGAAGCAAWTCCCAACACTTTTGTTCTTCCACACCACAGTGATGCTGAGGCAATTTACTTCGTGACAAAGGGTAAATTCTCTTC-CCTTTTGAACAAAATTTTGCAGCTTT-TAACACCAAATC--------CCCATTGATTGAAAACATGGTAAGTTATTTCTGTGTCAGGAAAGGGGACAATTACGTTTGTGACTCATGAAAACAAAGAGTCCTATAATGTACAGCGTGGAACTGTAGTCAGCGTTCCTGCASGAAGCACTGTTTACGTGGTTAACCAAGACAACCAAGAGAAGCTAATCATAGCCGTTCTCGCTCTGCCTGTTAATACTCCTGGCAAATATGAGGTTTTCTACTTTAACATTTATTTACTATAAG----------TTTCTA----CATAACCTTGAT-------------------------------------GTCTTGGTTAGTCTA------TTGACCCTGTACTT-ATAATTGCTGCAGGTATTCTTCCCCGCTGGAAATAATAAACCTGAGTCATATTACCGAGCGTTCAGCTATGAAGTTCTTGAGACCGTCTTCAATGTATATGGTTCTTTGAC---TAGCTATGAATCAA-----TTTTTGGTTTTTAC-TTTCTCTTG-TCTTTTATTTAT--TTATTTATT----CATTTTTATCTT----------GTTTGTTAGACACAAAGAGAGAAGCTGGAGAAGATCTTGGAGGAACAGAGAGGGCAGAAGAGGCAGCAGGGGCAACAGGGTATGTTCCGGAGAGCCAAACCAGAGCAGATAAGAGCAATAAGCCAACAAGCTACTTCTCCAAGGCAGAAAGGCGGGGAGAGACTTGCCATCAATCTATTGAGCCAATCGCCTGTCTACTCCAACCAAAACGGACGCTTCTTTGAGGTTTGTCCT---GAGGACTTCAGTCAATTTCAGAACATGGATGTCGCTGTTGCAGCCTTCAAACTGAATCAGGTA-CTTAAAA-----TCAAATGA--------TTTTTTTCAATAATTTCATTAAAATTTTTCTCTTGTCTACTCA-TACGACTACTAGATTAGCTTCATGAATATAAGCTCATGAATCCTTTT-GCAGGGAGCAATATTTGTGCCA
		Theobroma_cacao_B2              TGAAGAGGGCAACTTCAAGATCCTCCAGAGGTTTGCTGAGAACTCTCCTCCACTCAAGGGCATCAACGATTACCGCTTGGCCATGTTCGAAGCAAATCCCAACACTTTTATTCTTCCGCACCACTGTGATGCTGAGGCAATTTACTTCGTGACAAACGGTAA-TTCTCTTC-CCTTTCGAACAAAATTTTGCGGCTTT-TATCACCAAATC--------ACCATTGATTGAAAACATAGTAAATTATTTCTGTGTCAGGAAAGGGGACAATTACGTTTGTGACTCATGAAAACAAAGAGTCCTATAATGTACAGCGTGGAACAGTAGTCAGCGTTCCTGCAGGAAGCACTGTTTACGTGGTTAGCCAAGACAACCAAGAGAAGCTAACCATAGCTGTGCTCGCCCTGCCTGTTAATTCTCCTGGCAAATATGAGGTTTTCTACTTTAACATTTATTTATTAGAAG----------TTTCTA----CATAACCTTGAT-------------------------------------GTCTTGGTTAGTCTA------TTGACCCTGTACTT-ATAATTGCTGCAGTTATTCTTCCCCGCTGGAAATAATAAACCTGAATCATATTACGGAGCCTTCAGCTATGAAGTTCTTGAGACCGTCTTCAATGTATATGGTTCTTTGAC---TAGCTATGAATCAA-----TTTTTTGTTTTTAC-TTTCTCTTG-TCTTTTACTTGT--TTATTTATTTATTCATTTTTATCTT----------GTTTGTTAGACACAAAGAGAGAAGCTGGAGGAGATCTTGGAGGAACAGAGAGGGCAGATGAGGCAGCAGGGGCAGCAGGGTATGTTCCGGAAAGCCAAACCAGAGCAGATAAGAGCAATAAGCCAACAAGCTACTTCTCCAAGGCACAGAGGCGGGGAGAGACTTGCCATCAATCTATTGAGCCAATCGCCTGTCTACTCCAACCAAAACGGACGCTTCTTTGAGGCTTGTCCT---GAGGACTTCAGTCAATTTCAGAACATGGATGTCGCTGTTTCAGCCTTCAAACTGAATCAGGTA-CTTAAAA-----TCAAATGA--------TTTTTTTCAATAATTTCATTAAAATTTTTCTCTTGTCTACTCA-TACGATTACTAGATTAGCTTCATGAATATAAGCTCATGAATCCTTTT-GCAGGGAGCCATATTTGTGCCA
		Theobroma_cacao_B1              TGAAGAGGGCAACTTCAAGATCCTCCAGAGGTTTGCTGAGAACTCTCCTCCACTCAAGGGCATCAACGATTACCGCTTGGCCATGTTCGAAGCAAATCCCAACACTTTTATTCTTCCGCACCACTGTGATGCTGAGGCAATTTACTTCGTGACAAACGGTAAATTCTCTTC-CCTTTCGAACAAAATTTTGCGGCTTT-TATCACCAAATC--------ACCATTGATTGAAAACATAGTAAATTATTTCTGTGTCAGGAAAGGGGACAATTACGTTTGTGACTCATGAAAACAAAGAGTCCTATAATGTACAGCGTGGAACAGTAGTCAGCGTTCCTGCAGGAAGCACTGTTTACGTGGTTAGCCAAGACAACCAAGAGAAGCTAACCATAGCTGTGCTCGCCCTGCCTGTTAATTCTCCTGGCAAATATGAGGTTTTCTACTTTAACATTTATTTATTAGAAG----------TTTCTA----CATAACCTTGAT-------------------------------------GTCTTGGTTAGTCTA------TTGACCCTGTACTT-ATAATTGCTGCAGTTATTCTTCCCCGCTGGAAATAATAAACCTGAATCATATTACGGAGCCTTCAGCTATGAAGTTCTTGAGACCGTCTTCAATGTATATGKTTCTTTGAC---TAGCTATGAATCAA-----TTTTTTGTTTTTAC-TTTCTCTTG-TCTTTTACTTAT--TTATTTATTTATTCATTTTTATCTT----------GTTTGTTAGACACAAAGAGAGAAGCTGGAGGAGATCTTGGAGGAACAGAGAGGGCAGAAGAGGCAGCAGGGGCAGCAGGGTATGTTCCGGAAAGCCAAACCAGAGCAGATAAGAGCAATAAGCCAACAAGCTACTTCTCCAAGGCACAGAGGCGGGGAGAGACTTGCCATCAATCTATTGAGCCAATCGCCTGTCTACTCCAACCAAAACGGACGCTTCTTTGAGGCTTGTCCT---GAGGACTTCAGTCAATTTCAGAACATGGATGTCGCTGTTTCAGCCTTCAAACTGAATCAGGTA-CTTAAAA-----TCAAATGA--------TTTTTTTCAATAATTTCATTAAAATTTTTCTCTTGTCTACTCA-TACGATTACTAGATTAGCTTCATGAATATAAGCTCATGAATCCTTTT-GCAGGGAGCCATATTTGTGCCA
		Theobroma_cacao_C               TGAAGAGGGCAACTTCAAGATCCTCCAGAGGTTTGCTGAGAACTCTCCTCCACTCAAGGGCATCAACGATTACCGCTTGGCCATGTTCGAAGCAAATCCCAACACTTTTATTCTTCCGCACCACTGTGATGCTGAGGCAATTTACTTCGTGACAAACGGTAAATTCTCTTC-CCTTTCGAACAAAATTTTGCGGCTTT-TATCACCAAATC--------ACCATTGATTGAAAACATAGTAAATTATTTCTGTGTCAGGAAAGGGGACAATTACGTTTGTGACTCATGAAAACAAAGAGTCCTATAATGTACAGCGTGGAACAGTAGTCAGCGTTCCTGCAGGAAGCACTGTTTACGTGGTTAGCCAAGACAACCAAGAGAAGCTAACCATAGCTGTGCTCGCCCTGCCTGTTAATTCTCCTGGCAAATATGAGGTTTTCTACTT-AACATTTATTTATTAGAAG----------TTTCTA----CATAACCTTGAT-------------------------------------GTCTTGGTTAGTCTA------TTGACCCTGTACTT-ATAATTGCTGCAGTTATTCTTCCCCGCTGGAAATAATAAACCTGAATCATATTACGGAGCCTTCAGCTATGAAGTTCTTGAGACCGTCTTCAATGTATATGGTTCTTTGAC---TAGCTATGAATCAA----TTTTTTGCTTTTTACCTTTCTCTTG-TCTTTTACTTAT--TTATTTATTTATTCATTTTTATCTT----------GTTTGTTAGACACAAAGAGAGAAGCTGGAGGAGATCTTGGAGGAACAGAGAGGGCAGAAGAGGCAGCAGGGGCAGCAGGGTATGTTCCGGAAAGCCAAACCAGAGCAGATAAGAGCAATAAGCCAACAAGCTACTTCTCCAAGGCACAGAGGCGGGGAGAGACTTGCCATCAATCTATTGAGCCAATCGCCTGTCTACTCCAACCAAAACGGACGCTTCTTTGAGGCTTGTCCT---GAGGACTTCAGTCAATTTCAGAACATGGATGTCGCTGTTTCAGCCTTCAAACTGAATCAGGTA-CTTAAAA-----TCAAATGA--------TTTTTTTCAATAATTTCATTAAAATTTTTCTCTTGTCTACTCA-TACGACTACTAGATTAGCTTCATGAATATAAGCTCATGAATCCTTTT-GCAGGGAGCCATATTTGTGCCA
		Theobroma_cacao_A               TGAAGAGGGCAACTTCAAGATCCTCCAGAGGTTTGCTGAGAACTCTCCTCCACTCAAGGGCATCAACGATTACCGCTTGGCCATGTTCGAAGCAAATCCCAACACTTTTATTCTTCCGCACCACTGTGATGCTGAGGCAATTTACTTCGTGACAAACGGTAAATTCTCTTC-CCTTTCGAACAAAATTTTGCGGCTTT-TATCGCCAAATC--------ACCATTGATTGAAAACATAGTAAATTATTTCTGTGTCAGGAAAGGGGACAATTACGTTTGTGACTCATGAAAACAAAGAGTCCTATAATGTACAGCGTGGAACAGTAGTCAGCGTTCCTGCAGGAAGCACTGTTTACGTGGTTAGCCAAGACAACCAAGAGAAGCTAACCATAGCTGTGCTCGCCCTGCCTGTTAATTCTCCTGGCAAATATGAGGTTTTCTACTTTAACATTTATTTATTAGAAG----------TTTCTA----CATAACCTTGAT-------------------------------------GTCTTGGTTAGTCTA------TTGACCCTGTACTT-ATAATTGCTGCAGTTATTCTTCCCCGCTGGAAATAATAAACCTGAATCATATTACGGAGCCTTCAGCTATGAAGTTCTTGAGACCGTCTTCAATGTATATGGTTCTTTGAC---TAGCTATGAATCAA-----TTTTTTGTTTTTAC-TTTCTCTTG-TCTTTTACTTAT--TTATTTATTTATTCATTTTTATCTT----------GTTTGTTAGACACAAAGAGAGAAGCTGGAGGAGATCTTGGAGGAACAGAGAGGGCAGAAGAGGCAGCAGGGGCAGCAGGGTATGTTCCGGAAAGCCAAACCAGAGCAGATAAGAGCAATAAGCCAACAAGCTACTTCTCCAAGGCACAGAGGCGGGGAGAGACTTGCCATCAATCTATTGAGCCAATCGCCTGTCTACTCCAACCAAAACGGACGCTTCTTTGAGGCTTGTCCT---GAGGACTTCAGTCAATTTCAGAACATGGATGTCGCTGTTTCAGCCTTCAAACTGAATCAGGTA-CTTAAAA-----TCAAATGA--------TTTTTTTCAATAATTTCATTAAAATTTTTCTCTTGTCTACTCA-TACGACTACTAGATTAGCTTCATGAATATAAGCTCATGAATCCTTTT-GCAGGGAGCCATATTTGTGCCA
		Herrania_purpurea_2             TGAAGAGGGCAACTTCAAGATCCTCCAGAGGTTTGCTGAGAACTCTAGTCCACTCAAGGGCATCAACGATTACCGCTTCGCCATTTTCGAAGCAAATCCCAACACTTTTGTTCTTCCACACCACTCTGATGCTGAGGCAATTTACTTCGTGACAAAGGGTAAATTCTCTTC-CCTTTTGAACAAAATTTTGCGGCTTC-TTTCACCAAATC--------ATCATTGATTGAAAACATGGTAAATTATTTGTGTGTCAGGAAAGGGGACAATTACGTTTGTGACTCATGAAAACAAGGAGTCCTATAATGTACAGCGTGGAACTGCAGTCAGCGTTCCTGCAGCATGCACTGTTTACGTGGTTAACCAAGACAAACAAGAGAAGCTAACCATAGCCGTGCTCGCCCTGCCTGTTAATACTCCTGGCAAATATGAGGTTTTCTACTTTAACATTTATTTATTATAAG----------TTTCTA----CATATCCTTGAT-------------------------------------GTCTTGGTTAGTCTA------TTGACCACGTACTT-ATAATTGCTGCAGGTATTCTTCCCCGCTGGAAATAATAAACCTGAGTCATATTACAGAGCCTTCAGCTATGAAGTTCTTGAGGCCGTCTTCAATGTAAATGGTTCTTTGAC---TAGCTATGAACCAA-----TTTTTTGTTTTTAC-TTTCTCTTG-TCTTTTACTTAT--TTATTTATTTATTCATTTTTATCTC----------GTTCGTTAGACACAAAGAGAGAAGCTGGAGAAGATCTTTGAGGAACAGAGAGGGCAGGAGGGGCAGCAGGG---------TATGTTCCGGAGAGCCAAACCAGAGCAGATAAGAGCACTGAGCCAACAAGCTACTTCGCCAGGGCAGAGAGGCGGGGAGAGTCTTGCCGTCAATCTATTTAGCCAATCGCCTGTCTACTCCAACCGAAACGGACGCTTCTTTGAGGTTTGTCCT---GAGGCCTTCAGTCAATTTCAGAACATGGATGTCGCTGTTGCAGCCATCAAACTGAATCCGGTA-CTTAAAA-----TCAAATTA--------TTTTTTTCAATAATTTCATTAAAATCTTTCTCTTGCCTACTCA-TACTACTACCAGATTAGCTTCATGAATGCATGCTCATGAATCCTTTT-GCAGGGAGCAATATTTGTGCC-
		Herrania_purpurea_1             TGAAGAGGGCAACTTCAAKATCCTCCAGAGGTTTGCTGAGAACTCTAGTCCACTCARGGGCATCAACGATTACCGCTTCGCCATTTTCGAAGCAAATCCCAACACTTTTGTTCTTCCACACCACTCTGATGCTGAGGCAATTTACTTCGTGACAAAGGGTAAATTCTCTTC-CCTTTTGAACAAAATTTTGCGGCTTC-TTTCACCAAATC--------ATCATTGATTGAAAACATGGTAAATTATTTGTGTGTCAGGAAAGGGGACAATTACGTTTGTGACCCATGAAAACAAGGAGTCCTATAATGTACAGCGTGGAACTGCAGTCAGCGTTCCTGCAGCATGCACTGTTTACGTGGTTAACCAAGACAAACAAGAGAAGCTAACCATAGCCGTGCTCGCCCTGCCTGTTAATACTCCTGGCAAATATGAGGTTTTCTACTTTAACATTTATTTATTATAAG----------TTTCTA----CATATCCTTGAT-------------------------------------GTCTTGGTTAGTCTA------TTGACCACGTACTT-ATAATTGCTGCAGGTATTCTTCCCCGCTGGAAATAATAAACCTGAGTCATATTACAGAGCCTTCAGCTATGAAGTTCTTGAGGCCGTCTTCAATGTAAATGGTTCTTTGAC---TAGCTATGAACCAA-----TTTTTTGTTTTTAC-TTTCTCTTG-TCTTTTACTTAT--TTATTTATTTATTCATTTTTATCTC----------GTTTGTTAGACACAAAGAGAGAAGCTGGAGAAGATCTTTGAGGAACAGAGAGGGCAGGAGGGGCAGCAGGG---------TATGTTCCGGAGAGCCAAACCAGAGCAGATAAGAGCACTGAGCCAGCAAGCTACTTCGCCAGGGCAGAGAGGCGGGGAGAGTCTTGCCGTCAATCTATTTAGCCAATCGCCTGTCTACTCCAACCGAAACGGACGCTTCTTTGAGGTTTGTCCT---GAGGCCTTCAGTCAATTTCAGAACATGGATGTCGCTGTTGCAGCCATCAAACTGAATCCGGTA-CTTAAAA-----TCAAATTA--------TTTTTTTCAATAATTTCATTAAAATCTTTCTCTTGCCTACTCA-TACTACTACCAGATTAGCTTCATGAATGCATGCTCATGAATCCTTTT-GCAGGGAGCAATATTTGTGCCA
		Herrania_nycterodendron         TGAAGAGGGCAACTTCAAGATCCTCCAGAGGTTTGCTGAGAACTCTAGTCCACTCAAGGGCATCAACGATTACCGCTTCGCCATTTTCGAAGCAAATCCCAACACTTTTGTTCTTCCACACCACTCTGATGCTGAGGCAATTTACTTCGTGACAAAGGGTAAATTCTCTTC-CCTTTTGAACAAAATTTTGCGGCTTT-TTTCACCAAATC--------ATCATTGATTGAAAACATGGTAAATTATTTCTGTGTCAGGAAAGGGGACAATTACGTTTGTGACTGATGAAAACAAGGAGTCCTATAATGTACAGCGTGGAACCGTAGTCAGCGTTCCTGCAGGATGCACTGTTTACGTGGTTAACCAAGACAAACAAGAGAAGCTAACCATAGCCGTGCTCGCCCTGCCTGTTAATACTCCTGGCAAATATGAGGTTTTCTACTTTAACATTTATTTATTATAAG----------TTTCTA----CATATCCTTGAT-------------------------------------GTCTTGGTTAGTTTA------TTGACCACGTACTT-ATAATTGCTGCAGGTGTTCTTCCCCGCTGGAAATAATAAACCTGAGTCATATTACAGAGCCTTCAGCTGTGAAGTTCTTGAGGCCGTCTTCAATGTAAATGGTTCTCTGAC---TAGCTATGAATCAA-----TTTTTTGTTTTTAC-TTTCTCTTG-TCTTTTACTTAT--TTATTTATTTATTCATTTTTATCTC----------GTTTGTTAGACACAAAGAGAGAAGCTGGAGAAGATCTTTGAGGAACAGAGAGGGCAGGAGGGGCAGCAGGG---------TATGTTCCGGAGAGCCAAACCAGAGCAGATAAGAGCAATGAGCCAACAAGCTACTTCGCCAGGGCAGAGAGGCGGGGAGAGTCTTGCCGTCAATCTATTTAGCCAATCGCCTGTCTACTCCAACCGAAACGGACGCTTCTTTGAGGTTTGTCCTACTGAGGCCTTCAGTCAATTTCAGAACATGGATGTCGCTGTTGCAGCCATCAAACTGAATCCGGTA-CTTAAAA-----TCAAATGA--------TTTTTTTCAATAATTTCATTAAAATCTTTCTCTTGTGTACTCA-TACTACTGCCAGATTAGCTTCATGAATGCATGCTCATGAATCCTTTT-GCAGGGAGCAATATTTGTGCCA
		Herrania_cuatrecasana           TGAAGAGGGCAACTTCGAGATCCTCCAGAGGTTTGCTGAGAACTCTAGTCCACTCAAGGGCATCAACGATTACCGCTTCGCCATTTTCGAAGCAAATCCCAACACTTTTGTTCTTCCACACCACTCTGATGCTGAGGCAATTTACTTCGTGACAAAGGGTAAATTCTCTTC-CCTTTTGAACAAAATTTTGCGGCTTT-TTTCACCAAATC--------ATCATTGATTGAAAACATGGTAAATTATTTCTGTGTCAGGAAAGGGGACAATTACGTTTGTGACTGATGAAAACAAGGAGTCCTATAATGTACAGCGTGGAACCGTAGTCAGCGTTCCTGCAGGATGCACTGTTTACGTGGTTAACCAAGACAAACAAGAGAAGCTAACCATAGCCGTGCTCGCCCTGCCTGTTAATACTCCTGGCAAATATGAGGTTTTCTACTTTAACATTTATTTATTATAAG----------TTTCTA----CATATCCT?GAT-------------------------------------GTCTTGGTTAGTTTA------TTGACCACGTACTT-ATAATTGCTGCAGGTGTTCTTCCCCGCTGGAAATAATAAACCTGAGTCATATTACAGAGCCTTCAGCTATGAAGTTCTTGAGGCCGTCTTCAATGTAAATGGTTCTTTGAC---TAGCTATGAATCAA-----TTTTTTGTTTTTAC-TTTCTCTTG-TCTTTTACTTAT--TTATTTATTTATTCATTTTTATCTC----------GTTTGTTAGACACAAAGAGAGAAGCTGGAGAAGATCTTTGAGGAACAGAGAGGGCAGGAGGGGCAGCAGGG---------TATGTTCCGGAGAGCCAAACCAGAGCAGATAAGAGCAATGAGCCAACAAGCTACTTCGCCAGGGCAGAGAGGCGGGGAGAGTCTTGCCGTCAATCTATTTAGCCAATCGCCTGTCTACTCCAACCGAAACGGACGCTTCTTTGAGGTTTGTCCTACTGAGGCCTTCAGTCAATTTCAGAACATGGATGTCGCTGTTGCAGCCATCAAACTGAATCCGGTA-CTTAAAA-----TCAAATGA--------TTTTTTTCAATAATTTCATTAAAATCTTTCTCTTGTGTACTCA-TACTACTGCCAGATTAGCTTCATGAATGCATGCTCATGAATCCTTTT-GCAGGGAGCAATATTTGTGCCA
		Herrania_umbratica              TGAAGAGGGCAACTTCAAGATCCTCCAGAGGTTTGCTGAGAACTCTAGTCCACTCAAGGGCATCAACGATTACCGCTTCGCCATTTTCGAAGCAAATCCCAACACTTTTGTTCTTCCACACCACTCTGATGCTGAGGCAATTTACTTCGTGACAAAGGGTAAATTCTCTTC-CCTTTTGAACAAAATTTTGCGGCTTC-TTTCACCAAATC--------ATCATTGATTGAAAACATGGTAAATTATTTGTGTGTCAGGAAAGGGGACAATTACGTTTGTGACTCATGAAAACAAGGAGTCCTATAATGTACAGCGTGGAACTGCAGTCAGCGTTCCTGCAGGATGCACTGTTTACGTGGTTAACCAAGACAAACAAGAGAAGCTAACCATAGCCGTGCTCGCCCTGCCTGTTAATACTCCTGGCAAATATGAGGTTTTCTACTTTAACATTTATTTATTATAAG----------TTTCTA----CATATCCTTGAT-------------------------------------GTCTTGGTTAGTCTA------TTGACCACGTACTT-ATAATTGCTGCAGGTATTCTTCCCCGCTGGAAATAATAAACCTGAGTCATATTAC?????????????????????????????CGTCTTCAATGWAAATGGTYCTTTGAC---TAGCTATGAACCAA-----TTTTTTGTTTWWAC-TTTCTCTTG-TCTTTTACTTAT--TTATTWATTTATTCATTTTTATCTC----------GTTTGTTAGACACAAAGAGAGAAGCTGGAGAAGATCTTTGAGGAACAGAGAGGGCAGGAGGGGCAGCAGGG---------TATGTTCCGGAGAGCCAAACCAGAGCAGATAAGAGCACTGAGCCAACAAGCTACTTCGCCAGGGCAGAGAGGCGGGGAGAGTCTTGCCGTCAATCTATTTAGCCAATCGCCTGTCTACTCCAACCGAAACGGACGCTTCTTTGAGGTTTGTCCT---GAGGCCTTCAGTCAATTTCAGAACATGGATGTCGCTGTTGCAGCCATCAAACTGAATCCGGTA-CTTAAAA-----TCAAATTA--------TTTTTTTCAATAATTTCATTAAAATCTTTCTCTTGCCTACTCA-TACTACTACCAGATTAGCTTCATGAATGCATGCTCATGAATCCTTTT-GCAGGGAGCAATATTTGTGCCA
		Herrania_nitida                 TGAAGAGGGCAACTTCAAGATCCTCCAGAGGTTTGCTGAGAACTCTAGTCCACTCAAGGGCATCAACGATTACCGCTTCGCCATTTTCGAAGCAAATCCCAACACTTTTGTTCTTCCACACCACTCTGATGCTGAGGCAATTTACTTCGTGACAAAGGGTAAATTCTCTTC-CCTTTTGAACAAAATTTTGCGGCTTT-TTTCACCAATTC--------ATCATTGATTGAAAACATGGTAAATTATTTCGGTGTCAGGAAAGGGGACAATTACGTTTGTGACTGATGAAAACAAGGAGTCCTATAATGTACAGCGTGGAACCGTAGTCAGCGTTCCTGCAGGATGCACTGTTTACGTGGTTAACCAAGACAAACAAGAGAAGCTAACCATAGCCGTGCTCGCCCTGCCTGTTAATACTCCTGGCAAATATGAGGTTTTCTACTTTAACATTTATTTATTATAAG----------TTTCTA----CATATCCTTGAT-------------------------------------GTCTTGGCTAGTCTA------TTGACCACGTACTT-ATAATTGCTGCAGGTGTTCTTCCCCGCTGGAAATAATAAACCTGAGTCATATTACAGAGCCTTCAGCTATGAAGTTCTTGAGGCCGTCTTCAATGTAAATGGTTCTTTGAC---TAGCTATGAATCAA-----TTTTTTGTTTTTAC-TTTCTCTTG-TCTTTTACTTAT--TTATTTATTTATTCATTTTTATCTC----------GTTTGTTAGACACAAAGAGAGAATCTGGAGAAGATCTTTGAGGAACAGAGAGGGCAGGAGGGGCAGCAGGG---------TATGTTCCGGAGAGCCAAACCAGAGCAGATAAGAGCAATGAGCCAACAAGCTACTTCGCCAGGACAGAGAGGCGGGGAGAGTCTTGCCGTCAATCTATTTAGCCAATCGCCTGTCTACTCCAACCGAAACGGACGCTTCTTTGAGGTTTGTCCT---GAGGCCTTCAGTCAATTTCAGAACATGGATGTCGCTGTTGCAGCCATCAAACTGAGTCCGGTA-CTTAAAA-----TCAAATGA--------TTTTTTTCAATAATTTCATTAAAATCTTTCTCTTGTGTACTCA-TACTACTGCCAGATTTGCTTCATGAATGCATGCTCATGAATCCTTTT-GCAGGGAGCAATATTTGTGCCA
		Theobroma_microcarpum_1         TGAAGAGGGCAACTTCAAGATCCTCCAGAGGTTTGCTGAGAACTCTCCGCCACTCAAGGGAATCAACGATTACCGCTTGGCCATTTTCGAAGCAAATCCCAACACTTTTATTCTTCCACACCACTGTGATGCTGAGGCAATTTACTTCGTGACAAAAGGTAAATTGTCTTC-CCTTTCGAACAAAATTTTGCGGCTTT-TATCACCAAATC--------ACCATTGATTGAAAACATGGTAAATTATTTCTGTGTCAGGAAAGGGGACAATTACGTTTGTGACTCATGAAAACAAAGAGTCCTATAATGTACAGCGTGGAACAGTAGTCAGTGTTCCTGCAGGAAGCACTGTTTACGTGGTTAACCAAGACAACCAAGAGAAGCTAACCATAGCTGTGCTCGCCCTGCCTGTTAATACTCCTGGCAAATATGAGGTYTTCTACTTTAACATTTATTTATTATAAG----------TTTCTA----CATAACCTTGAT-------------------------------------GTCTTGGTTAGTCTA------TTGACCCTGTACTT-ATAATTGCTGCAGGTATTCTTCCCCGCTGGAAATAATGAACCTATGTCTTATTACCGAGCCTTCAGCTATGAAGTTCTTGAGGCCGTCTTCAATGTATATGGTTCTTTGAC---TAGCTATGAATCGA-----TTTTTTGCTTTTAC-TTTCTCTYG-TGTTCTACTTAT--TTATTTATTTATTCATTTTTATCTT----------GTTTTTCAGACACGAAGAGAGAAGCTGGAGAAGATCTTTGAGGAACAGAGAGGCCAGCAGAAGCAGCAGGG---------TATGTTCCGGAGAGCCAAACCAGAGCAGATAAAAGCAATAAGCCAACAAGCTACTTCTCCAAGGCAGAGAGGCGGGGAGAGCCTTGCCATCAATCTATTGAGCCAATCGCCTGTCTACTCCAACCAAAATGGACGCTTCTTTGAGGCTCGTCCT---GAGAACTTCAGTCAATTTCAGAACGTGGATGTCTCTGTTGCAGCCTTCAAAGTGAATCAGGTA-CTTAAAA-----TCAAAAGA--------TTTTTTTCAATAATTTCATTAAAATTTTTCTCTTGTCTGCTCA-TACGACTACTAGATTAGCTTCGTGAATATAAGCTCATGAATCCTATT-GCAGGGAGCAATATTGGTGCCA
		Theobroma_speciosum             TGAAGAGGGCAACTTCAAGATCCTCCAGAGGTTTGCTGAGAACTCTCGTCAACTCAAGGGCATCAACGATTACCGCTTCGCCTTGTTCGAAGCAAATCCCAACACTTTTGTTCTTCCACACCACAGTGATGCTGAGGCAATTTACTTCGTGACAAAGGGTAAATTCTCTTC-CCTTTTGAACAAAATTTTGCAGCTTT-TAACACCAAATC--------CCGATTGATTGAAAACATGGTAAATTATTTCTGTGTCAGGGAAGGGGACAATTACGTTTGTGACTCATGAAAACAAAGAGTCCTATAATGTACAGCGTGGAACTGTAGTCAGCGTTCCTGCAGGAAGCACTGTTTACGTGGTTAACCAAGACAACCRAGAGAAGCTGACCATAGCCGTTCTCGCTCGGCCTGTTAATACCCCTGGCAAATATGARGTTTTCTACTTTAACATTTATTTATTATAAG----------TTTCTA----CATAACCTTGAT-------------------------------------GTCTTGGTTAGTCTA------TTGACCCTTTACTT-ATAATTGCTGCAGTTATTCTTCCCCGCTGGAACTAATAAACCTAAGTCWTATTACCAWGCGTTCAGCTATGAAGTTCTTGAGACCGTCTTCAATGTATATGGTTCTTTGAC---TAGCTATGAATCAA-----TTTTTTGTTTTTAC-TTTCTCTTG-TCTTTTACTTAT--TTATTTATT----CATTTTTATCTT----------GTTTGTTAGACACAAAGAGAGAAGCTGGAGAAGATCTTGGAGGAACAGAGAGGGCAGAAGAGGCAGCAGGGGCAACAGGGTATGTTCAGGAGAGCCAAACCAGAGCAGATAAGAGCAATCAGCCAACAAGCTACTTCTCCAAGGCAGAGAGGCGGGGAGAGACTTGCCATCAATCTATTGAGCCAATCGCCTGTCTACTCCAACCAAAACGGACGCTTCTTTGAGGCTTGTCCT---GAGGACTTCAGTCAATTTCAGAACATGGATGTCGCTGTTGCAGCCTTCAAACTGAATCAGGTA-CTTAAAA-----TCAAATGA--------TTTTTTTCAATAATTTCATTAAAATTTTTCTC--GTCTACTCA-TACGACTACTAGATTAGCTTAATGAATATAAGCTCATGAATCCTTTT-GCAGG-AGCAATATTTGT----
		Guazuma_ulmifolia_2             TGAACAGGGCAACGCCAGGATCCTCCAGAGGTTTGTTGAGAAGTCTCATCTACTTCAGAACATCAACAATTTCCGCTTCGGCGTGATTGAAGCAAATCCCAACACCGTAATCCTTCCACACCACACTGATGCTGAGAAAATTCTCTTCGTGACAAACGGTAAAATCTCTTC-TCTTTTGAACAAAATTTTGCGGCTTTATATCACCAAATA--------ACTGTTGATTAACAACATGGTCGATTATTTCTGTATCAGGAAGGGGGAAATTCACCATTGTGACTCATGAAAACAAAGAGTCCTTTAATGTTCAGCGTGGTACTGTACTCAGATTTTCTGCAGGTAGCACTGTGTACCTGGTTAACCAAGACAACCGAGAGAAGCTGACCATAGCCGTGCTCGCTCAGCCTATTAATCAGCCTGACAAATATGAGGTTTTTTACTT-AACATTTTTAGGTTTTATCTAATAGCAATTTTCTA----CATAACCTTAAT------------------------------------TGTCTTGGTTTGGATA------TTAACCCTGTACTT-ATAATTGATGCAGGACTTCTTCCCCGTTGGAAATAATTCTCCTAAGTCATATCTCCAAACCTTCAGCAATGAAGTTCTTGAGACTGTCCTCAATGTATATAGTTCTTGGAC---TAGATATGAATTAATCTTCCTTTTTCTTTTGAC-TTTCACTTGATCTTTTACTTAT--ATATTTATTTATTCATTTTTGTCTT--------------GTTAGTCATCAAGAGAGGAGCTGCAGAGGATGTTTCAGCCAAAGAGTGGGCAGCAGAGGCAGCAGGG---------TATATTCCGGAAAGCCAGACCGGAGCAGATCAGAGCAATGACCCAAGAAGCTACTTCTTCCCCAAAACGGCGAGAGGAAAGACTTGTGTTCAATCTATTGAACCAATCGCCTGTCTACGCCAACCAAAACGGACGCTTCTTTGAGGCTTCTCCT---AATGAATTCAGTCAACTCAGGGACATAAATGTCGCTGTTTCATCCTTGAGATTGAATCAGGTG-CTTAAAAAAAAATCAAATGT-TTTTTTTTTCTTTTCAATAATTGCATTGAAATTTTTCTC--GTCTTCTCA-TA-------TAGCTT-------------------CATGAATTCTTTT-GCAGGGATCAATATATGTCCCA
		Guazuma_ulmifolia_1             TGAACAGGGCAACGCCAGGATCCTCCAGAGGTTCGCCGAGAAGTCTCATTTACATGAGAACATCAACAATTTCCGCTTCGGCGTAATTGAAATAAATCCCAACAGTATAATGCTTCCACACCATTGTGATGCTGAGAAAATTTTATTTGTGACAAACGGTAAATTCTCTTC-TCTTTTGAACAGAAATTTATGGATTT-TATCACCAAAT------------GTTTATTAAAAACATGGTCAATTATTTCTGTATCAGGAA?GGGGACATTCACCATTGTGACTCATGAAAGCAAAGAGTCCTTTAATATACAGCGTGGTACTGTACTCAGATTTTCTGCAGGTAGCACTGTGTACCTGGTTAACCAAGACAACCGAGAGAAGCTGACCATAGCCGTGCTCGCTCAGCCTGTTAATCAGCCTGACAAATATGAGGTTTTTTACTT-AACATTTTTAGGTTTTATCTAATAGCAATTTTCTA----CATAACCTTAAT------------------------------------TGTCTTGGTTTGGATA------TTAACCCTGTACTT-ATAATTGATGCAGGACTTCTTCCCCGTTGGAAATAATTCTCCTAAGTCATATCTCCAAACCTTCAGCAATGAAGTTCTTGAGACTGTCCTCAATGTATATAGTTCTTGGAC---TAGATATGAATTAATCTTCCTTTTTCTTTTGAC-TTTCACTTGATCTTTTACTTAT--ATATTTATTTATTCATTTTTGTCTT--------------GTTAGTCATCAAGAGAGGAGCCGCAGAGGATGTTTCAGCCAAAGAGTGGGCAGCAGAGGCAGCAGGG---------TATATTCCGGAAAGCCAGACCGGAGCAGATCAGAGCAATGACCCAAGAAGCTACCTCTTCGCCAAAACGGCAAGAGGAAAGACTTGTGTTCAACCTATTGAACCAATCGCCTGTCTACGCCAACCAAAACGGACGGTTCTTTGAGGCTTCTCCT---AATGAATTCAGTCAACTCAGGGACATAAATGTCGCTGTTTCATCCTTGAGATTGAATCAGGTG-CTTAAAAAGAA-TCAAATGTTTTTTTTTTTTTTTTCAATAATTGCATTGGAATTTTTCTC--GTCTTCTCA-TA-------TAGCTT-------------------CATGAATTCTTTT-GCAGGGATCAATATATGTCCCA
		Theobroma_chocoense_2           TGAAGAGGGCAACTTCAAGATCCTCCAGAGGTTTGATGAGAACTCTCCTCTACTCAAGGGCATCAACGATTACCGCTTGGCCATGTTCGAAGCAAATCCCAACACTTTTATTCTTCCACACCACTGTGATGCTGAGGCAATTTACTTCGTGACAAACGGTAAATTCTCTTC-CCTTTCGAACAAAATTTTGCGGCTTT-TTTCACCAAATC--------ACCATCGATTGAAAACATGGTAAATTATT-CTGT--CAGGAAAGGGGACAATTACGTTTGTGACTCATGAAAACAAAGAGTCCTATAATGTACAGCGTGGAACAGTAGTCAGCGTTCCTGCAGGATGCACTGTTTACGTGGTTAACCAAGACAACCAAGAGAAGCTAACCATAGCTGTGCTCGCCCTGCCTGTTAATACTCCTGGCAAATATGAGGTTTTCTACTTTAACATTTATTTATTATAAG----------TTTCTA----CATAACCTTGAT-------------------------------------GTCTTGATTAGTCCA------TTGACCCTGTACTT-ATAATTGCTGCAGGTATTCTTCCCCGCTGGAAATAATGAACCTGAGTCATATTACCGAGGCTTCAGCTATAAAGTTCTTGAGACTGTCTTCAATGTATATGGTTCTTTGAC---TAGCTATGAATCAA-----TGTTTTGTTTTTAC-GTTCTCTTG-TCTTTTACTTAT--TTATTTATTTATTCATTTTTATCTT----------GTTTGTTAGACACGAAGAGAGAAGCTGGAGAAGATCTTTGAGGAACAGAGAGGGCAGCAGGGGCAGCGGGG---------TATGTTCCGGAGAGCCAAACCAGAGCAGATAAGAGCAATGAGCCAACAAGCTACTTCTCCAAGGCAGAGAGGCGGGGAGAGACTTGCCATCAATGTACTGAGCCAATCGCCTGTCTACTGCAACCAAAACGGACGCTTCTTTGAGGCTCGTCCT---GAGGACTTCAGTCAATTTCAGAACATGGATGTCTCTGTTGCAGCCTTCAAACTGAATCAGGTA-CTTAAAA-----TCAAATGA---------TTTTTTCAATAATTTCATTAAAACTTTTCTCTTGTCTACTCA-TACGACTACTAGATTAGCTTCATGAATATAAGCTCATGAATCCTTTT-GCAGGGAGCGATATTTGTGCCA
		Theobroma_simiarum              TGAAGAGGGCAACCTCAAGATCCTCCAGAGGTTTGATGAGAACTCTCCTCTACTCAAGGGCATCAACGATTACCGCTTGGCCATGTTCGAAGCAAATCCCAACACTTTTATTCTTCCACACCACTGTGATGCTGAGGCAATTTACTTCGTGACAAACGGTAAATTCTCTTC-CCTTTCGAACAAAATTTTGCGGCTTT-TTTCACCAAATC--------ACCATCGATTGAAAACATGGTAAATTATTTCTGT--CAGGAAAGGGGACAATTACGTTTGTGACTCATGAAAACAAAGAGTCCTATAATGTACAGCGTGGAATAGTAGTCAGCGTTCCTGCAGGATGCACTGTTTACGTGGTTAACCAAGACAACCAAGAGAAGCTAACCATAGCTGTGCTCGCCCTGCCTGTTAATACTCCTGGCAAATATGAGGTTTTCTACTTTAACATTTATTTATTATAAG----------TTTCTA----CATAACCTTGAT-------------------------------------GTCTTGATTAGTCCA------TTGACCGTGTACTT-ATAATTGCTGCAGGTATTCTTCCCCGCTGGAAATAATGAACCTGAGTCATATTACCGAGGCTTCAGCTATAAAGTTCTTGAGACCGTCTTCAATGTATATGGTTCTTTGAC---TAGCTATGAATCAA-----TGTTTTGTTTTTAC-TTTCTCTTG-TCTTTTACTTAT--TTATTTATTTATTCATTTTTATCTT----------GTTTGTTAGACACGAAGAGAGAAGCTGGAGAAGATCTTTGAGGAACAGAGAGGGCAGCAGGGGCAGCGGGG---------TATGTTCCGGAGAGCCAGACCAGAGCAGATAAGAGCAATGAGCCAACAAGCTACTTCTCCAAGGCAGAGAGGCGGGGAGAGACTTGCCATCAATCTACTGAGCCAATCGCCTGTCTACTGCAACCAAAACGGACGCTTCTTTGAGGCTCGTCCT---GAGGACTTCAGTCAATTTCAGAACATGGATGTCTCTGTTGCAGCCTTCAAACTGAATCAGGTA-CTTAAAA-----TCAAATGA---------TTTTTTCAATAATTTCATTAAAACTTTTCTCTTGTCTACTCA-TACGACTACTAGATTAGCTTCATGAATATAAGCTCATGAATCCTTTT-GCAGGGAGCAATATTTGTGCCA
	;
END;

BEGIN CODONS;
CODONPOSSET * UNTITLED = 
 N: 159 - 258 435 - 583 665 - 786 1075 - 1202 , 
 1: 2 - 158 \ 3 261 - 432 \ 3 584 - 662 \ 3 787 - 1072 \ 3 1203 - 1218 \ 3 , 
 2: 3 - 156 \ 3 259 - 433 \ 3 585 - 663 \ 3 788 - 1073 \ 3 1204 - 1219 \ 3 , 
 3: 1 - 157 \ 3 260 - 434 \ 3 586 - 664 \ 3 789 - 1074 \ 3 1205 - 1220 \ 3 1220 ; 
 CODESET * UNTITLED = Universal.ext: all ; 
 END;

BEGIN ASSUMPTIONS;
USERTYPE tr$tv_1$2 STEPMATRIX = 4 
 A C G T 
 . 2 2 1 
 2 . 1 2 
 2 1 . 2 
 1 2 2 . 
 ; 
 
 USERTYPE tr$tv_1$5 STEPMATRIX = 4 
 A C G T 
 . 5 5 1 
 5 . 1 5 
 5 1 . 5 
 1 5 5 . 
 ; 
 
 OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS ; 
 CHARSET exon = 1 - 158 259 - 434 584 - 664 787 - 1074 1203 - 1220 ; 
 CHARSET intron = 159 - 258 435 - 583 665 - 786 1075 - 1202 ; 
 CHARSET exon1 = 1 - 158 ; 
 CHARSET exon2 = 259 - 434 ; 
 CHARSET exon3 = 584 - 664 ; 
 CHARSET exon4 = 787 - 1074 ; 
 CHARSET exon5 = 1203 - 1220 ; 
 CHARSET INDELS = ; 
 END;