NEXUS
[File created by TreeBASE:  7/26/07  21:12:34]
[Matrix accession#: M2703]

BEGIN TAXA;
	TITLE M2703;
	DIMENSIONS  NTAX=54;
	TAXLABELS
		Leptosphaeria_doliolum	Wettsteinina_pachyasca	Wettsteinina_macrotheca	Wettsteinina_dryadis	Westerdykella_cylindrica	Venturia_hanliniana	Venturia_carpophila	Trematosphaeria_heterospora	Stylodothis_puccinioides	Setosphaeria_monoceras	Setomelanomma_holmii	Pyrenophora_triticirepentis	Pyrenophora_trichostoma	Pyrenophora_tetrarhenae	Pyrenophora_seminiperda	Pyrenophora_dictyoides	Preussia_terricola	Pleospora_tomatonis	Pleospora_sedicola	Pleospora_halophila	Pleospora_ambigua	Pleomassaria_siparia	Pleospora_herbarum_var_herbarum	Phaeosphaeria_avenaria	Phaeosphaeria_vagans	Myriangium_duriaei	Microxyphium_citri	Massarina_ramunculicola	Macroventuria_wentii	Macroventuria_anomochaeta	Lophiostoma_caulium	Letendraea_helminthicola	Leptosphaerulina_trifolii	Leptosphaerulina_briosiana	Leptosphaerulina_australis	Leptosphaerulina_argentinensis	Leptosphaeria_maculans	Kirschsteiniothelia_elaterascus	Karstenula_rhodostoma	Glyphium_elatum	Dothidea_sambuci	Dothidea_ribesia	Curvularia_heteropogonicola	Curvularia_brachyspora	Curvularia_oryzae	Cochliobolus_lunatus	Cochliobolus_heterostrophus	Cochliobolus_pallescens_b	Cochliobolus_pallescens	Cochliobolus_nodulosus	Cochliobolus_hawaiiensis	Cochliobolus_cynodontis	Bipolaris_papendorfii	Bimuria_novaezelandiae
	;
END;

BEGIN CHARACTERS;
	TITLE M2703;
	DIMENSIONS NCHAR=4;
	FORMAT SYMBOLS = " A C G T 4 5 6 7 8 9 B D E F H J K L M N O P Q R S U " MISSING = ? GAP = - ;
	CHARSTATELABELS
		1 Region_1 / CCCCTTTGGG CCCTCTCAGG CCCTTTCAGG CCGTTTACG CCTCCTCTGGGG CCTCCTTTGGGG CCTCTTTGGG CGTCTTCGGC CGTCTTTGGC CTCAC CTCCTTTGGA CTCCTTTGGG CTCTCTTTGGGG CTCTGCTCTAGG CTCTGTAAAAGA CTCTTTCAGA CTCTTTCAGG CTCTTTTAG CTCTTTTAGA _ _ CTCTTTTAGG CTTATG GCTCTTTCAGG TGATGAAA, 2 Region_2 / CATGCCTTCGCCG CCAACCCGCGCTA CCAACCTTCGCCG CCAGCCTCCGCCG CCGGCTCCCCCCGC CCGGTGCCCCCGC CCTGCCTTCGCCG CCTGCCTTTGCCG CGGTAGGGCCTG CTAGCCTTCGCCG CTAGCCTTCGCTC CTAGCCTTTACCG CTAGCTATCGCCG CTAGCTATTGCCCG CTAGCTATTGCCG CTAGCTCTTGCCG CTATCCTTCGCCG CTGATCTTTGCCG CTGGCCTTCGCCG _ _ CTTGTCTTCACCG CTTGTCTTCGCCG GAAAGGTACCCTCC GAAGGGCGCCCTA GCTCTGGCACCTTA, 3 Region_3 / GAATGACCT GGAGTGT GGATGGCCA GGCAGTGT GGGAGAACT GGGAGAGCT GGGAGGACT GGGAGGCCT GGGAGGTGT GGGAGTGT GGGGAAGTGT GGGGAAGTT GGGGTGGACT GGGGTGT GGGTGACCT GGGTGGCCT GGGTTGGCCT GGTTGCCA GGTTGGCCA _ _ TGTAGGCCA, 	4 Region_4 / ACCCCTCG ACCCGCAA ACCCTCTTTGG ACCCTTT ACCCTTTT ACCGCA ACCGCAA ACCTTTCG ACCTTTTA ACCTTTTT AGGCTTAA CCCCTTTTA TCCCGCAA
	;
	MATRIX
		Leptosphaeria_doliolum                LM??
		Wettsteinina_pachyasca                GP9A
		Wettsteinina_macrotheca               GP9A
		Wettsteinina_dryadis                  GQ9A
		Westerdykella_cylindrica              CG6A
		Venturia_hanliniana                   9585
		Venturia_carpophila                   S486
		Trematosphaeria_heterospora           DT5T
		Stylodothis_puccinioides              QUBC
		Setosphaeria_monoceras                JH7C
		Setomelanomma_holmii                  R97T
		Pyrenophora_triticirepentis           MH7C
		Pyrenophora_trichostoma               MH7C
		Pyrenophora_tetrarhenae               KH7C
		Pyrenophora_seminiperda               JH7C
		Pyrenophora_dictyoides                PH7C
		Preussia_terricola                    PC6A
		Pleospora_tomatonis                   PE7C
		Pleospora_sedicola                    PE7C
		Pleospora_halophila                   PH7C
		Pleospora_ambigua                     MJ7A
		Pleomassaria_siparia                  AATA
		Pleospora_herbarum_var_herbarum       PE7C
		Phaeosphaeria_avenaria                MK78
		Phaeosphaeria_vagans                  M9K8
		Myriangium_duriaei                    6RFE
		Microxyphium_citri                    7SC8
		Massarina_ramunculicola               HBA9
		Macroventuria_wentii                  8D47
		Macroventuria_anomochaeta             8D47
		Lophiostoma_caulium                   BT58
		Letendraea_helminthicola              57H6
		Leptosphaerulina_trifolii             8D47
		Leptosphaerulina_briosiana            8D47
		Leptosphaerulina_australis            8D47
		Leptosphaerulina_argentinensis        8D47
		Leptosphaeria_maculans                PM7D
		Kirschsteiniothelia_elaterascus       FLPG
		Karstenula_rhodostoma                 E7H4
		Glyphium_elatum                       T8EB
		Dothidea_sambuci                      QUDC
		Dothidea_ribesia                      QUBC
		Curvularia_heteropogonicola           PHMC
		Curvularia_brachyspora                JH6C
		Curvularia_oryzae                     JH7C
		Cochliobolus_lunatus                  JFLC
		Cochliobolus_heterostrophus           JH7C
		Cochliobolus_pallescens_b             JHMC
		Cochliobolus_pallescens               JHMC
		Cochliobolus_nodulosus                JH7C
		Cochliobolus_hawaiiensis              JHGC
		Cochliobolus_cynodontis               JH7C
		Bipolaris_papendorfii                 MHMC
		Bimuria_novaezelandiae                46JA
	;
END;

BEGIN ASSUMPTIONS;
USERTYPE Region_1 REALMATRIX = 23 
 A C G T 4 5 6 7 8 9 B D E F H J K L M P Q R S 
 . 4.0 3.0 4.0 4.0 3.0 1.0 4.0 3.0 4.0 2.0 1.0 4.0 4.0 7.0 5.0 4.0 4.0 4.0 3.0 3.0 4.0 8.0 
 4.0 . 1.0 4.0 3.0 4.0 5.0 6.0 5.0 4.0 6.0 5.0 4.0 5.0 5.0 3.0 2.0 4.0 4.0 3.0 3.0 3.0 7.0 
 3.0 1.0 . 3.0 4.0 3.0 4.0 5.0 6.0 4.0 5.0 4.0 4.0 4.0 5.0 2.0 1.0 3.0 3.0 2.0 3.0 2.0 7.0 
 4.0 4.0 3.0 . 6.0 5.0 4.0 7.0 6.0 4.0 5.0 4.0 5.0 5.0 6.0 5.0 4.0 4.0 4.0 3.0 2.0 5.0 6.0 
 4.0 3.0 4.0 6.0 . 1.0 3.0 4.0 5.0 4.0 6.0 5.0 4.0 4.0 9.0 6.0 5.0 7.0 6.0 5.0 4.0 5.0 7.0 
 3.0 4.0 3.0 5.0 1.0 . 2.0 4.0 4.0 4.0 5.0 4.0 3.0 8.0 9.0 5.0 4.0 6.0 5.0 4.0 4.0 4.0 7.0 
 1.0 5.0 4.0 4.0 3.0 2.0 . 3.0 2.0 4.0 3.0 2.0 5.0 5.0 8.0 4.0 5.0 3.0 5.0 4.0 3.0 3.0 7.0 
 4.0 6.0 5.0 7.0 4.0 4.0 3.0 . 1.0 4.0 4.0 4.0 6.0 7.0 8.0 5.0 5.0 5.0 6.0 6.0 4.0 5.0 7.0 
 3.0 5.0 6.0 6.0 5.0 4.0 2.0 1.0 . 3.0 3.0 3.0 6.0 6.0 8.0 3.0 3.0 4.0 5.0 5.0 4.0 5.0 7.0 
 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 3.0 . 3.0 3.0 3.0 3.0 3.0 3.0 3.0 2.0 3.0 3.0 3.0 2.0 5.0 
 2.0 6.0 5.0 5.0 6.0 5.0 3.0 4.0 3.0 3.0 . 1.0 4.0 4.0 5.0 3.0 4.0 4.0 2.0 3.0 4.0 5.0 7.0 
 1.0 5.0 4.0 4.0 5.0 4.0 2.0 4.0 3.0 3.0 1.0 . 3.0 3.0 6.0 4.0 3.0 3.0 3.0 2.0 3.0 4.0 8.0 
 4.0 4.0 4.0 5.0 4.0 3.0 5.0 6.0 6.0 3.0 4.0 3.0 . 5.0 6.0 4.0 3.0 3.0 4.0 3.0 4.0 4.0 7.0 
 4.0 5.0 4.0 5.0 4.0 8.0 5.0 7.0 6.0 3.0 4.0 3.0 5.0 . 5.0 4.0 3.0 4.0 3.0 2.0 2.0 6.0 6.0 
 7.0 5.0 5.0 6.0 9.0 9.0 8.0 8.0 8.0 3.0 5.0 6.0 6.0 5.0 . 3.0 4.0 4.0 3.0 4.0 4.0 7.0 5.0 
 5.0 3.0 2.0 5.0 6.0 5.0 4.0 5.0 3.0 3.0 3.0 4.0 4.0 4.0 3.0 . 1.0 3.0 1.0 2.0 4.0 2.0 6.0 
 4.0 2.0 1.0 4.0 5.0 4.0 5.0 5.0 3.0 3.0 4.0 3.0 3.0 3.0 4.0 1.0 . 2.0 2.0 1.0 3.0 1.0 7.0 
 4.0 4.0 3.0 4.0 7.0 6.0 3.0 5.0 4.0 2.0 4.0 3.0 3.0 4.0 4.0 3.0 2.0 . 2.0 1.0 3.0 6.0 6.0 
 4.0 4.0 3.0 4.0 6.0 5.0 5.0 6.0 5.0 3.0 2.0 3.0 4.0 3.0 3.0 1.0 2.0 2.0 . 1.0 3.0 3.0 6.0 
 3.0 3.0 2.0 3.0 5.0 4.0 4.0 6.0 5.0 3.0 3.0 2.0 3.0 2.0 4.0 2.0 1.0 1.0 1.0 . 2.0 2.0 7.0 
 3.0 3.0 3.0 2.0 4.0 4.0 3.0 4.0 4.0 3.0 4.0 3.0 4.0 2.0 4.0 4.0 3.0 3.0 3.0 2.0 . 4.0 5.0 
 4.0 3.0 2.0 5.0 5.0 4.0 3.0 5.0 5.0 2.0 5.0 4.0 4.0 6.0 7.0 2.0 1.0 6.0 3.0 2.0 4.0 . 7.0 
 8.0 7.0 7.0 6.0 7.0 7.0 7.0 7.0 7.0 5.0 7.0 8.0 7.0 6.0 5.0 6.0 7.0 6.0 6.0 7.0 5.0 7.0 . 
 ; 
 
 USERTYPE Region_2 REALMATRIX = 24 
 A C G T 4 5 6 7 8 9 B D E F H J K L M P Q R S U 
 . 7.0 3.0 3.0 8.0 6.0 1.0 2.0 9.0 2.0 4.0 4.0 4.0 6.0 5.0 5.0 3.0 5.0 2.0 3.0 2.0 9.0 5.0 7.0 
 7.0 . 4.0 5.0 7.0 8.0 6.0 7.0 8.0 6.0 5.0 8.0 7.0 9.0 3.0 7.0 6.0 8.0 7.0 9.0 8.0 9.0 6.0 9.0 
 3.0 4.0 . 2.0 8.0 9.0 2.0 3.0 9.0 2.0 4.0 4.0 4.0 6.0 5.0 5.0 2.0 4.0 3.0 5.0 4.0 8.0 10.0 12.0 
 3.0 5.0 2.0 . 6.0 6.0 2.0 3.0 9.0 2.0 4.0 4.0 4.0 6.0 5.0 5.0 3.0 6.0 3.0 5.0 4.0 9.0 9.0 11.0 
 8.0 7.0 8.0 6.0 . 2.0 7.0 8.0 8.0 8.0 7.0 9.0 7.0 8.0 8.0 7.0 9.0 9.0 7.0 8.0 8.0 7.0 9.0 7.0 
 6.0 8.0 9.0 6.0 2.0 . 4.0 5.0 7.0 9.0 6.0 10.0 9.0 9.0 8.0 9.0 10.0 9.0 5.0 7.0 6.0 9.0 7.0 8.0 
 1.0 6.0 2.0 2.0 7.0 4.0 . 1.0 9.0 2.0 4.0 4.0 4.0 6.0 5.0 5.0 3.0 5.0 2.0 3.0 2.0 10.0 10.0 11.0 
 2.0 7.0 3.0 3.0 8.0 5.0 1.0 . 9.0 3.0 5.0 3.0 5.0 5.0 4.0 4.0 4.0 4.0 3.0 4.0 3.0 11.0 11.0 11.0 
 9.0 8.0 9.0 9.0 8.0 7.0 9.0 9.0 . 9.0 9.0 9.0 9.0 5.0 9.0 9.0 8.0 8.0 8.0 8.0 8.0 10.0 8.0 9.0 
 2.0 6.0 2.0 2.0 8.0 9.0 2.0 3.0 9.0 . 2.0 2.0 2.0 4.0 3.0 3.0 1.0 4.0 1.0 3.0 2.0 9.0 9.0 11.0 
 4.0 5.0 4.0 4.0 7.0 6.0 4.0 5.0 9.0 2.0 . 4.0 4.0 6.0 5.0 5.0 3.0 6.0 3.0 5.0 4.0 8.0 8.0 10.0 
 4.0 8.0 4.0 4.0 9.0 10.0 4.0 3.0 9.0 2.0 4.0 . 4.0 4.0 3.0 3.0 3.0 4.0 3.0 3.0 4.0 10.0 10.0 8.0 
 4.0 7.0 4.0 4.0 7.0 9.0 4.0 5.0 9.0 2.0 4.0 4.0 . 2.0 1.0 2.0 3.0 6.0 3.0 5.0 4.0 8.0 9.0 7.0 
 6.0 9.0 6.0 6.0 8.0 9.0 6.0 5.0 5.0 4.0 6.0 4.0 2.0 . 1.0 2.0 5.0 5.0 5.0 5.0 5.0 9.0 10.0 7.0 
 5.0 3.0 5.0 5.0 8.0 8.0 5.0 4.0 9.0 3.0 5.0 3.0 1.0 1.0 . 1.0 4.0 5.0 4.0 6.0 5.0 9.0 10.0 6.0 
 5.0 7.0 5.0 5.0 7.0 9.0 5.0 4.0 9.0 3.0 5.0 3.0 2.0 2.0 1.0 . 4.0 5.0 4.0 6.0 5.0 10.0 9.0 5.0 
 3.0 6.0 2.0 3.0 9.0 10.0 3.0 4.0 8.0 1.0 3.0 3.0 3.0 5.0 4.0 4.0 . 4.0 2.0 4.0 3.0 9.0 10.0 10.0 
 5.0 8.0 4.0 6.0 9.0 9.0 5.0 4.0 8.0 4.0 6.0 4.0 6.0 5.0 5.0 5.0 4.0 . 3.0 4.0 3.0 10.0 6.0 6.0 
 2.0 7.0 3.0 3.0 7.0 5.0 2.0 3.0 8.0 1.0 3.0 3.0 3.0 5.0 4.0 4.0 2.0 3.0 . 3.0 2.0 10.0 5.0 11.0 
 3.0 9.0 5.0 5.0 8.0 7.0 3.0 4.0 8.0 3.0 5.0 3.0 5.0 5.0 6.0 6.0 4.0 4.0 3.0 . 1.0 10.0 10.0 11.0 
 2.0 8.0 4.0 4.0 8.0 6.0 2.0 3.0 8.0 2.0 4.0 4.0 4.0 5.0 5.0 5.0 3.0 3.0 2.0 1.0 . 10.0 6.0 11.0 
 9.0 9.0 8.0 9.0 7.0 9.0 10.0 11.0 10.0 9.0 8.0 10.0 8.0 9.0 9.0 10.0 9.0 10.0 10.0 10.0 10.0 . 5.0 4.0 
 5.0 6.0 10.0 9.0 9.0 7.0 10.0 11.0 8.0 9.0 8.0 10.0 9.0 10.0 10.0 9.0 10.0 6.0 5.0 10.0 6.0 5.0 . 6.0 
 7.0 9.0 12.0 11.0 7.0 8.0 11.0 11.0 9.0 11.0 10.0 8.0 7.0 7.0 6.0 5.0 10.0 6.0 11.0 11.0 11.0 4.0 6.0 . 
 ; 
 
 USERTYPE Region_3 REALMATRIX = 20 
 A C G T 4 5 6 7 8 9 B D E F H J K L M P 
 . 5.0 3.0 6.0 4.0 4.0 5.0 4.0 6.0 6.0 7.0 6.0 5.0 5.0 2.0 3.0 4.0 4.0 4.0 6.0 
 5.0 . 4.0 1.0 5.0 5.0 4.0 4.0 2.0 1.0 1.0 4.0 2.0 1.0 5.0 4.0 3.0 5.0 5.0 6.0 
 3.0 4.0 . 6.0 5.0 5.0 4.0 3.0 5.0 6.0 7.0 3.0 4.0 4.0 3.0 2.0 3.0 2.0 1.0 3.0 
 6.0 1.0 6.0 . 4.0 3.0 4.0 4.0 2.0 1.0 2.0 5.0 5.0 2.0 5.0 5.0 5.0 5.0 6.0 6.0 
 4.0 5.0 5.0 4.0 . 1.0 1.0 2.0 3.0 3.0 5.0 4.0 3.0 4.0 2.0 3.0 4.0 5.0 5.0 5.0 
 4.0 5.0 5.0 3.0 1.0 . 2.0 2.0 3.0 2.0 4.0 3.0 4.0 4.0 2.0 3.0 4.0 5.0 5.0 5.0 
 5.0 4.0 4.0 4.0 1.0 2.0 . 1.0 2.0 3.0 4.0 5.0 2.0 3.0 3.0 2.0 3.0 5.0 4.0 4.0 
 4.0 4.0 3.0 4.0 2.0 2.0 1.0 . 2.0 3.0 4.0 5.0 3.0 3.0 2.0 1.0 2.0 4.0 3.0 3.0 
 6.0 2.0 5.0 2.0 3.0 3.0 2.0 2.0 . 1.0 2.0 5.0 4.0 1.0 4.0 3.0 4.0 6.0 5.0 5.0 
 6.0 1.0 6.0 1.0 3.0 2.0 3.0 3.0 1.0 . 1.0 4.0 4.0 1.0 4.0 4.0 4.0 4.0 6.0 6.0 
 7.0 1.0 7.0 2.0 5.0 4.0 4.0 4.0 2.0 1.0 . 1.0 4.0 1.0 5.0 5.0 5.0 6.0 7.0 7.0 
 6.0 4.0 3.0 5.0 4.0 3.0 5.0 5.0 5.0 4.0 1.0 . 4.0 3.0 4.0 5.0 5.0 7.0 2.0 8.0 
 5.0 2.0 4.0 5.0 3.0 4.0 2.0 3.0 4.0 4.0 4.0 4.0 . 1.0 3.0 2.0 2.0 4.0 4.0 6.0 
 5.0 1.0 4.0 2.0 4.0 4.0 3.0 3.0 1.0 1.0 1.0 3.0 1.0 . 4.0 3.0 2.0 5.0 4.0 5.0 
 2.0 5.0 3.0 5.0 2.0 2.0 3.0 2.0 4.0 4.0 5.0 4.0 3.0 4.0 . 1.0 2.0 3.0 3.0 5.0 
 3.0 4.0 2.0 5.0 3.0 3.0 2.0 1.0 3.0 4.0 5.0 5.0 2.0 3.0 1.0 . 1.0 3.0 2.0 4.0 
 4.0 3.0 3.0 5.0 4.0 4.0 3.0 2.0 4.0 4.0 5.0 5.0 2.0 2.0 2.0 1.0 . 3.0 2.0 4.0 
 4.0 5.0 2.0 5.0 5.0 5.0 5.0 4.0 6.0 4.0 6.0 7.0 4.0 5.0 3.0 3.0 3.0 . 1.0 3.0 
 4.0 5.0 1.0 6.0 5.0 5.0 4.0 3.0 5.0 6.0 7.0 2.0 4.0 4.0 3.0 2.0 2.0 1.0 . 2.0 
 6.0 6.0 3.0 6.0 5.0 5.0 4.0 3.0 5.0 6.0 7.0 8.0 6.0 5.0 5.0 4.0 4.0 3.0 2.0 . 
 ; 
 
 USERTYPE Region_4 REALMATRIX = 13 
 A C G T 4 5 6 7 8 9 B D E 
 . 4.0 3.0 3.0 3.0 3.0 4.0 2.0 4.0 4.0 5.0 5.0 5.0 
 4.0 . 4.0 4.0 4.0 3.0 1.0 2.0 4.0 5.0 4.0 5.0 1.0 
 3.0 4.0 . 3.0 3.0 4.0 5.0 2.0 3.0 3.0 5.0 4.0 5.0 
 3.0 4.0 3.0 . 1.0 4.0 4.0 3.0 3.0 2.0 4.0 3.0 5.0 
 3.0 4.0 3.0 1.0 . 4.0 5.0 3.0 2.0 1.0 4.0 3.0 5.0 
 3.0 3.0 4.0 4.0 4.0 . 1.0 3.0 3.0 4.0 4.0 4.0 4.0 
 4.0 1.0 5.0 4.0 5.0 1.0 . 5.0 4.0 5.0 4.0 5.0 2.0 
 2.0 2.0 2.0 3.0 3.0 3.0 5.0 . 2.0 2.0 5.0 4.0 4.0 
 4.0 4.0 3.0 3.0 2.0 3.0 4.0 2.0 . 1.0 4.0 2.0 5.0 
 4.0 5.0 3.0 2.0 1.0 4.0 5.0 2.0 1.0 . 5.0 3.0 6.0 
 5.0 4.0 5.0 4.0 4.0 4.0 4.0 5.0 4.0 5.0 . 5.0 5.0 
 5.0 5.0 4.0 3.0 3.0 4.0 5.0 4.0 2.0 3.0 5.0 . 5.0 
 5.0 1.0 5.0 5.0 5.0 4.0 2.0 4.0 5.0 6.0 5.0 5.0 . 
 ; 
 
 OPTIONS DEFTYPE = unord PolyTcount = MINSTEPS gapmode = newstate ; 
 TYPESET * UNTITLED = Region_1: 1 , Region_2: 2 , Region_3: 3 , Region_4: 4 ; 
 END;