#NEXUS [written Sun Mar 03 16:12:20 SAST 2013 by Mesquite version 2.72 (build 527) at plantpat-g5.local/146.232.216.112] BEGIN TAXA; TITLE Taxa; DIMENSIONS NTAX=33; TAXLABELS 'Pythium_paddicum_AB217667.1 ' 'Pythium_paddicum_CBS_698.83 ' 'Pythium_iwayamai_AB299388.1 ' 'Pythium_iwayamai_CBS_697.83 ' 'Pythium_okanoganense_CBS_701.83' 'Pythium_okanoganense_CBS_315.81' 'Pythium_polare_AB299394.1 ' 'Pythium_polare_AB299395.1 ' 'Pythium_sp._Ro21_AY129553.1 ' 'Pythium_sp._PB-2007_AM489757.1 ' 'Pythium_sp._6_eu_EU038812.1 ' 'Pythium_sp._WJB-1_PPRI8300' 'Pythium_violae_CBS_159.64 ' 'Pythium_canariense_CBS_112353 ' 'Pythium_aff._canariense_OW1707 ' 'STE-U_7549' 'STE-U_7548' 'STE-U_7550' 'Pythium_iwayamai_CBS_156.64 ' 'STE-U_7553' 'STE-U_7551' 'STE-U_7552' 'STE-U_7555' 'STE-U_7558_Clone_2' 'STE-U_7560' 'STE-U_7559' 'STE-U_7557' 'STE-U_7556' 'STE-U_7558_Clone_1' 'Pythium_nagaii_CBS_779.96' 'Pythium_nagaii_P16712 ' 'Pythium_ultimum_var._ultimum_PPRI8615' 'Pythium_helicandrum_PPRI8508 ' ; END; BEGIN CHARACTERS; TITLE Character_Matrix; DIMENSIONS NCHAR=1015; FORMAT DATATYPE = DNA GAP = - MISSING = ?; MATRIX 'Pythium_paddicum_AB217667.1 ' CCACACCTAAAAA--ACTTTCCACGTGAACTGTCTTACTTAGTTTTGCGCTGCTGC-GGTAGCGGTG-T--TCTGCGCA----CTTGTGCGTGGTGCGCTGTTTATCTGCAGCGGCTAAACGAAGGTTGGTTGGAGTGT------TGTTGTGTGTGCTT-------------------------------------------------TCTTGCGCGCCAT----CGTACGCTCTGCCGGCTGACTTATTTTTTCAACCCC--TTACT--TTAAAAACTGAA--CTATACTGTGAGAACGAAAGTTCTCGCTTTTAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAAACTTGCCTTTCTTTT-TCTGTGTAGTCAG-GATTGGAGACGGCCGATGTGAAGTGTCTCG---CGTG------------CGTCGGTTTTTGGTA---------AAACAAAAGCACGGCGGTCGAGTCCTTTTAAAACGACACGATCTTTCTTATGTG-TCTGCGGCGTGTGGCGCTC-GAACGCAGTGATTTTCGGATCGCTTG--TGGTCGTCGGCGACTTCGGTGAATGCAT--TATGGAGGAAACCTCGGTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGATGCTGTGTGTGGATTCCGTGTTGACCTTGAGGTGTACTGGCGGTTGCGGGCTTG-ACCCGGGTGTTGTTGT-------GTAGTAGAGTGTTGCATTT-TGTTGTGGACTCGTCCGTGACTGGCGCCTTT-GTTGGTGTCGG----TTGTGGGAGAAGGGTTG-ATTTGGGAAATTTTGTGTGCACTTTTGTG--------------------------------TACATCTCAA 'Pythium_paddicum_CBS_698.83 ' CCACACCTAAAAA--ACTTTCCACGTGAACTGTCTTACTTAGTTTTGCGCTGCTGC-GGTAGCGGTG-T--TCTGCGCA----CTTGTGCGTGGTGCGCTGTTTATCTGCAGCGGCTAAACGAAGGTTGGTTGGAGTGT------TGTTGTGTGTGCTT-------------------------------------------------TCTTGCGCGCCAT----CGTACGCTCTGCCGGCTGACTTATTTTTTCAACCCC--TTACT--TTAAAAACTGAA--CTATACTGTGAGAACGAAAGTTCTCGCTTTTAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAAACTTGCCTTTCTTTT-TCTGTGTAGTCAG-GATTGGAGACGGCCGATGTGAAGTGTCTCG---CGTG------------CGTCGGTTTTTGGTA---------AAACAAAAGCACGGCGGTCGAGTCCTTTTAAAACGACACGATCTTTCTTATGTG-TCTGCGGCGTGTGGCGCTC-GAACGCAGTGATTTTCGGATCGCTTG--TGGTCGTCGGCGACTTCGGTGAATGCAT--TATGGAGGAAACCTCGGTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGATGCTGTGTGTGGATTCCGTGTTGACCTTGAGGTGTACTGGCGGTTGCGGGCTTG-ACCCGGGTGTTGTTGT-------GTAGTAGAGTGTTGCATTT-TGTTGTGGACTCGTCCGTGACTGGCGCCTTT-GTTGGTGTCGG----TTGTGGGAGAAGGGTTG-ATTTGGGAAATTTTGTGTGCACTTTTGTG--------------------------------TACATCTCAA 'Pythium_iwayamai_AB299388.1 ' CCACACCTAAAAA--ACTTTCCACGTGAACTGTCTTACTTAGTTTTGCGCTGCTGC-GGTGGCGGTG-T--TCTGCGCA----CTTGTGCGTGGGACGCTGTTCATCTGCGGCGGCTAAACGAAGGTTGGTTGGAGTGT------TGTTGTGTGTGCTT-------------------------------------------------TCTTGCGCGCCGT----CGTACGCTCTGCCGGCTGACTTATTTTTTCAACCCC--TTACT--TTAAAAACTGAA--CTATACTGTGAGAACGAAAGTTCTCGCTTTTAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAAACTTGCCTTTCTTTT-TCTGTGTAGTCAG-GATTGGAGACGGCCGATGTGAAGTGTCTCG---CGTG------------CGTCGGTTTTTGGTG---------AAACAAAAGCACGGCGGTCGAGTCCTTTTAAAACGACACGATCTTTCTTATGTG-TCTGCGGCGTGTGGCGCTC-GAACGCGGTGATTTTCGGATCGCTTG--TGGTCGTCGGCGACTTCGGTGAATGCAT--TATGGAGGAAACCTCGGTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGATGCTGTGTGTGGATTCCGTGTTTACCTTGAGGTGTACTGGCGGTTGCGGGCTTG-ACCCGGGTGTTGCTGT-------GTAGTAGAGTGTTGCATTT-TGTTGTGGACTCGTCCGTGGCTGGCGCCTTG-ATTGGTGTCGG----TTGTGGGAGAAGGGTTG-ATTTGGGAAATTTTGTGTGCACTTTTGTG--------------------------------TACATCTCAA 'Pythium_iwayamai_CBS_697.83 ' CCACACCTAAAAA--ACTTTCCACGTGAACTGTCTTACTTAGTTTTGCGCTGCTGC-GGTGGCGGTG-T--TCTGCGCA----CTTGTGCGTGGGACGCTGTTCATCTGCGGCGGCTAAACGAAGGTTGGTTGGAGTGT------TGTTGTGTGTGCTT-------------------------------------------------TCTTGCGCGCCGT----CGTACGCTCTGCCGGCTGACTTATTTTTTCAACCCC--TTACT--TTAAAAACTGAA--CTATACTGTGAGAACGAAAGTTCTCGCTTTTAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAAACTTGCCTTTCTTTT-TCTGTGTAGTCAG-GATTGGAGACGGCCGATGTGAAGTGTCTCG---CGTG------------CGTCGGTTTTTGGTG---------AAACAAAAGCACGGCGGTCGAGTCCTTTTAAAACGACACGATCTTTCTTATGTG-TCTGCGGCGTGTGGCGCTC-GAACGCGGTGATTTTCGGATCGCTTG--TGGTCGTCGGCGACTTCGGTGAATGCAT--TATGGAGGAAACCTCGGTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGATGCTGTGTGTGGATTCCGTGTTTACCTTGAGGTGTACTGGCGGTTGCGGGCTTG-ACCCGGGTGTTGCTGT-------GTAGTAGAGTGTTGCATTT-TGTTGTGGACTCGTCCGTGGCTGGCGCCTTG-ATTGGTGTCGG----TTGTGGGAGAAGGGTTG-ATTTGGGAAATTTTGTGTGCACTTTTGTG--------------------------------TACATCTCAA 'Pythium_okanoganense_CBS_701.83' CCACACCTAAAAA--ACTTTCCACGTGAACTGTCTTACTTAGTTTTGTGCTGCTGC-GGTGGCGGTG-T--TCTGCGCA----CATGTGCGTGGGACGCTGTTT-TCTGCAGTGGCTAAACGAAGGTTGGTTGGAGTGT------TGTTGTGTGTGCTT-------------------------------------------------TATTGCGCGCCAT----CGTACGCTCTGCCGGCTGACTTATTTTTTCAACCCC--TTACT--TTAAAAACTGAA--CTATACTGTGAGAACGAAAGTTCTCGCTTTTAACTAGATAACAACTTTCAGCAGTGGAWGTCTAGGCTCGCACATCGA???????????????????????????????CGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAAACTTGCCTTTCTTTT-TCTGTGTAGTCAG-GATTGGAGACGGCCGATGTGAAGTGTCTCG---CGTG------------CGTCGGTTTTTGGTG---------AAACAAAAGCACGGCGGTCGAGTCCTTTTAAAACGACACGATCTTTCTTATGTG-TCTGCGGCGTGTGGCGCTC-GAACGCAGTGATTTTCGGATCGCTTG--TGGTCGTCGGCGACTTCGGTGAATGCAT--TATGGAGGAAACCTCGGTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGATGCTGTGTGTGGATTCCGTGTTTATCTTGAGGTGTACTGGCGGTTGCGGGCTTG-AACCGGGTGTTGTTGT-------GTAGTAGAGAGTTGCATTT-TGTTGTGGATTCGTCTGTGACTGGCGCCTTT-ATTGGTGTCGG----TTGTGGGAGAAGGATTG-ATTTGGGAAATTTTGTGTACACTTTTGTG--------------------------------TACATCTCAA 'Pythium_okanoganense_CBS_315.81' CCACACCTAAAAA--ACTTTCCACGTGAACTGTCTTACTTAGTTTTGCGCTGCTGC-G--AGGGGTG-T--TCTGCGCA----CATGTGCGTAGGGCG----TCTTTTGCGGCGGCTAAACGAAGGTTGGTT-GAGTGT------TGTTGTGCGTGCTT-------------------------------------------------TATTGCGCGCCGT----CGTACGCT-TGCCGGCTGACTTATTTTTTCAACCCC--TTTTA-ACTTACAACTGAA--TTATACTGTGAGAACGAAAGTTCTCGCTTTTAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAAACTTGCCTTTCTTTT-CCTGTGTAGTCAG-GGGAGGAGACGGCCGATGTGAAGTGTCTCG---CGTG------------CGTCGGTTTTTGGTG---------AAACAAAAGCACGACGGTCGAGTCCTTTTAAAACGACACGATCTTTCTTATGTGCTCTGCAGCGTGTGGCGCTC-GAACGCGGTGATTTTCGGATCGCTTG--TGGTCGTCGGCGACTTCGGTGAATGCAT--TATGGAGGAAACCTCGGTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTTACTGGGTGTGGATTCCGTGTTCTCCTTGAGGTGTACTGGCGGTTGCGGGCTTG-AACCGGGTGTTGCTGT-------GTAGTAGAGAGTTGCATTT-TGTTGTGGACTCGTCCGTGGCCGGCTTCCTTGATTGGTGTCGG----TTGTGGGAGAAGGATTG-ATTTGGGAAATTTTGTGTGC---ATGTGTCATTTC-TGGCTCG-----TG-----------TACATCTCAA 'Pythium_polare_AB299394.1 ' CCACACCTAAAAA--ACTTTCCACGTGAACTGTCTGACTTAGTTTTGCGCTGCTGC-G--GGGTGTG-T--TTTGCGTG----CTTGCAC-GGGAAGC---ACTGTCTGCGGCGGCTGAACGAAGGTTGGTG-TCGTGT-----TGTCTGTGCGCGCTT-------------------------------------------------GATTGCGTGC--GGGA-CGTCCG-T-CGCCGGCTGACTTATTTTT-CAACCCC--ATTAC--CTAACAACTGAA--CTATACTGTGAGAACGAAAGTTCTCGCTTTAAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTT-CCTGTGTAGTCAG-GGGAGGAGACGGCCGATGTGAAGTGTCTCG---CGTG------------CGTCGGCTTCT--TG--------TGATGAGAAGCACGGCGGTCGAGTCCTTTTAAAACGACACGATCTTTCTTATGGG-TTTGCGACGTGTGTTGGTC-GAACGCGGTGATTTTCGGATCGCTCG--TGGTCGTCGGCGACTTCGGTGAATGCAT--TATGGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGAGTGTGGATTCCGTGTTCGCCTTGAGGTGTACTGGCGGTCGTGGGCTTG-ACCTGTTTGTCGTTGT-------GTAGTAGGCTGTCGCATTG--TTTGCGGATTCGTCTGTGGCTGACAC--TT-TCTGGTGTTGG----TTGCGGGAGAATGATTG-ATTTGGGAAATGTTGTGTTT---GCTGTGCCTTTT-TGGGTCGG----CC-----------TACATCTCAA 'Pythium_polare_AB299395.1 ' CCACACCTAAAAA--ACTTTCCACGTGAACTGTCTGACTTAGTTTTGCGCTGCTGC-G--GGGTGTG-T--TTTGCGTG----CTTGCAC-GGGAGGC---ACTGTCTGCGGCGGCTGAACGAAGGTTGGTG-TCGTGT-----TGTCTGTGCGCGCTT-------------------------------------------------GATTGCGTGC--GGGA-CGTCCG-T-CGCCGGCTGACTTATTTTT-CAACCCC--ATTAC--CTAACAACTGAA--CTATACTGTGAGAACGAAAGTTCTCGCTTTAAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTT-CCTGTGTAGTCAG-GGGAGGAGACGGCCGATGTGAAGTGTCTCG---CGTG------------CGTCGGCTTCT--TG--------TGATGAGAAGCACGGCGGTCGAGTCCTTTTAAAACGACACGATCTTTCTTATGGG-TTTGCGACGTGTGTTGGTC-GAACGCGGTGATTTTCGGATCGCTCG--TGGTCGTCGGCGACTTCGGTGAATGCAT--TATGGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGAGTGTGGATTCCGTGTTCGCCTTGAGGTGTACTGGCGGTCGTGGGCTTG-ACCTGTTTGTCGTTGT-------GTAGTAGGCTGTCGCATTG--TTTGCGGATTCGTCTGTGGCTGACAC--TT-TCTGGTGTTGG----TTGCGGGAGAATGATTG-ATTTGGGAAATGTTGTGTTT---GCTGTGCCTTTT-TGGGTCGG----CC-----------TACATCTCAA 'Pythium_sp._Ro21_AY129553.1 ' CCACACCTAAAAA--ACTTTCCACGTGAACTGTCTGACTTAGTTTTGCGCTGCTGC-G--GGGTGTG-T--TTTGCGTG----CTTGCAC-GGGAGGC---ACTGTCTGCGGCGGCTGAACGAAGGTTGGTG-TCGTGT-----TGTCTGTGCGCGCTT-------------------------------------------------GATTGCGTGC--GGGA-CGTCCG-T-CGCCGGCTGACTTATTTTT-CAACCCC--ATTAC--CTAACAACTGAA--CTATACTGTGAGAACGAAAGTTCTCGCTTTAAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTT-CCTGTGTAGTCAG-GGGAGGAGACGGCCGATGTGAAGTGTCTCG---CGTG------------CGTCGGCTTCT--TG--------TGATGAGAAGCACGGCGGTCGAGTCCTTTTAAAACGACACGATCTTTCTTATGGG-TTTGCGACGTGTGTTGGTC-GAACGCGGTGATTTTCGGATCGCTCG--TGGTCGTCGGCGACTTCGGTGAATGCAT--TATGGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGAGTGTGGATTCCGTGTTCGCCTTGAGGTGTACTGGCGGTCGTGGGCTTG-ACCTGTTTGTCGTTGT-------GTAGTAGGCTGTCGCATTG--TTTGCGGATTCGTCTGTGGCTGACAC--TT-TCTGGTGTTGG----TTGCGGGAGAATGATTG-ATTTGGGAAATGTTGTGTTT---GCTGTGCCTTTT-TGGGTCGG----CC-----------TACATCTCAA 'Pythium_sp._PB-2007_AM489757.1 ' -------------------------------------------------------------GGTGTG-T--TTTGCGTG----CTTGCACGGGGAGGC---ACTGTCTGCGGCGGCTGAACGAAGGTTGGTG-TCGTGT-----TGTCTGTGCGCGCTT-------------------------------------------------GATTGCGTGC--GGGA-CGTCCG-T-CGCCGGCTGACTTATTTTT-CAACCCCC-ATTAC--CTAACAACTGAA--CTATACTGTGAGAACGAAAGTTCTCGCTTTAAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTT-CCTGTGTAGTCAG-GGGAGGAGACGGCCGATGTGAAGTGTCTCG---CGTG------------CGTCGGCTTCT--TG--------TGATGAGGAGCACGGCGGTCGAGTCCTTTTAAAACGACACGATCTTTCTTATGGG-TTTGCGACGTGTGTTGGTC-GAACGCGGTGATTTTCGGATCGCTCG--TGGTCGTCGGCGACTTCGGTGAATGCAT--TATGGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGAGTGTGGATTCCGTGTTCGCCTTGAGGTGTACTGGCGGTCGTGGGCTTG-ACCTGTTTGTCGTTGT-------GTA??A?GCTGTC?CATTG--TTTGCGGATTC?TCTGTGGCTGACAC--TT-TCTGGTGTTGG----TTGC------------------------------------------------------------------------------------- 'Pythium_sp._6_eu_EU038812.1 ' C-AC-CCT--AAA--ACTTTCC-CGTGAACTGTCTTACTTAGTTTTGTGCTGCTGC-G--GGATACT-C--------------------T---ATTGA---GTATTCTGCAACGGCTGAACGAAGGTTGGTT-GAGTGT-----TGTCTCTGCGTACTT-------------------------------------------------GATTGTGTGC--GGGA-CGTACGC--CGCCGACTGACTTATTCTTTCAACCCC--ATACT--TTAAGAACTGAA--CTATACTGTGAGAACGAAAGTTCTCGCTTTTAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTT-CCTGTGTAGTCAG-GGGAGGAGACGGCTGATGTGAAGTGTCTCG---CGTG------------CGTCGGTTTTT---------CA-TTGTGAGAAGCACGGCGGTCGAGTCCTTTTAAAACGACACGATCTTTCTTATGAC-TTTGCGACGTGTGTTGGTC-GAACGCGGTGATTTTCGGATCGCTCG--TGGTCGTCGGCGACTTCGGTGAATGCAT--TATGGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGGGTGTGACTTCCGTGTTCGCCTTGAGGTGTACTGGCGGTTGTGGGCTTG-ATCAGTTGATTGTTGT-------GTAGTAGGCTAATGCATTG--TTTGCGAATTCGTCTGTGATTGACACATTT-GTTTGTGTTGG----TTGTGGGAGAATGATTG-ATTTGGGAAATTTTGTGTTT---GTT---TGCCTT-CGGGTGGA----TA-----------AGCATCTCAA 'Pythium_sp._WJB-1_PPRI8300' CCACACCTAAAAA--ACTTTCCACGTGAACTGTCTTACTTAGTTTTGCGCTGCTGC-A--GAGTATT-C--TGTGCTCT----TTTGAGT---ATAGA---GTATACTGTAGTGGCTGAACGAAGGTTGGTT-GAGTGT-----TGTCTCTATGTGCTT-------------------------------------------------GATTGCATGT--GGGA-CGTACGC--CACCAGCTGACTTATTTTTTCAACCCC--TTACA--TAAACAACTGAA--AAATACTGTGAGAACGAAAGTTCTTGCTTTAAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTTCGGGTTATACCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTT-CCTGTGTAGTCAG-GGAAAGAGACGGCTGATGTGAAGTGTCTCG---CGTG------------CGTCGGTTTTT-GG------TA-TTTCTAAAAGCACGGCGGTCGAGTCCTTTGAAAACGACACGATCTTTCTTATGAG-TTTACGACGTGTGTTGGTC-GAACGCGGTGATTTTCGGATCGCTCG--TGGTCGTCGGCGACTTCGGTGAATACAT--TATGGAAGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGAGTGTGGATTTCGTATTCGCCTTGAGGTGTACTGGCGGTTGTGGGCTTG-ATCTGTTGATTGTCGT-------GTAGTAGATGAATGCAATG--TTTGTGAATTCGTCTACAAGTGATACACTT-TTGTGTATTGG----TTGTAGGAGAGTGATTG-ATTTGGGAAATATTGTGTTT---GTT---TGCCTT-TGTGTAAA----TA-----------AACATCTCAA 'Pythium_violae_CBS_159.64 ' CCACACCTAAAAAATACTTTCCACGTGAACTGTCTTACTTAGTTTTGCGCTGCTGT-C--GGGAGTG-T--TCTGCGTGCGC-T-TGCACGGAGAGCG---TTTCT-TGCAACGGCTGAACGAAGGTTGGTT-GAGTGT--GTTGTCTTTTGCGTGCTT-------------------------------------------------GATTGTATGCGGGGGA-CGTACGC--CGCCGGCTGACTTACTTTTTCAACCCC--ATTAC-GAAACAAACTGAA--GTATACTGTGAGAACGAAAGTTCTCGCTTTGAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTT-CCTGTGTAGTCAG-GGGAGGAGACGGCCGATGTGAAGTGTCTCG---CGTG------------CGTCGGTTTCTTGGT--A-TTG-TTTCCAAGAGCACGGCGGTCGAGTCCTTTGAAAACGACACGATCTTTCTTATGGGTTTTGCGACGTGTGTTGGTC-GAACGCGGTGATTTTCGGATCGCTCG--TGGTCGTCGGCGACTTCGGTGAATGCAT--TATGGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGGGTGTGGCTTCCGTGTTCGCCTCGAGGTGTACTGGCGGTCGTGGGCTTG-ACCTGTTTGTGGCTGT-------GTAGTAGGCTAGTGCATTG-TTTCGCGGATCCGTCTGCGACTGACGC--TT-TCGGGTGTTGGTG--TTGTAGGAGAAAGATTG-ATTTGGGAAGTATTGTGTTT---GC-GTTTGCCTT-CGGGCGAG----TA-----------AGCATCTCAA 'Pythium_canariense_CBS_112353 ' CCACACCTAAAAA--ACTTTCCACGTGAACTGTCTTACTTAGTTTTGCGCTGCTGT-C--GGGAGTG-T--TCTGCGTGCGC-TTTGCACGGAGAGCG---TTTCT-TGCAACGGCTGAACGAAGGTTGGTG-GCGTGTTGTCTTTTCTTTGCGTGCTT-------------------------------------------------GATTGTATGCGGGAGA-CGTACGC--CGCCGGCTGACTTACTTTTTCAACCCC--ATTAC-GAAACAAACTGAAGTATATACTGTGAGAACGAAAGTTCTCGCTTTGAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTT-CCTGTGTAGTCAG-GGGAGGAGACGGCCGATGTGAAGTGTCTCG---CGTG------------CGTCGGTTTCTTGGT--A-TTC-TTTCCAAGAGCACGGCGGTCGAGTCCTTTGAAAACGACACGATCTTTCTTATGAGTTTTGCGACGTGTGTTGGTC-GAACGCGGTGATTTTCGGATCGCTCG--TGGTCGTCGGCGACTTCGGTGAATGCAT--TATGGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGAGTGTGGAATCCGTGTTCGCCTCGAGGTGTACTGGCGGTCGTGAGCTTG-ACCTGTTTGTCGGTGT-------GTAGTAGGCTTGTGCATTGTTTTCGCGGACTCGTCTGCGACTGACGC--TT-TCGGGTGTTGGTGTATTGCAGGAGAGAGCTTG-ATTTGGGAAGTTTTGTGTTT---GTTGTTTGCCTT-CGGGTGGA---ATA-----------AGCATCTCAA 'Pythium_aff._canariense_OW1707 ' CCACACCTAAAAA--ACTTTCCACGTGAACTGTCTTACTTAGTTTTGTGCTGTTGTAA--GGGAGTGTT--TCTGTGCGCCTTTGTGTGTGCAAAACA---TTTCTCTGCAACGGCTGAACGAAGGTTGGTG-----GCGTGTTGTCTTT----------------------------------------------------------GA----------GA---CGTACGC--CGCCGGCTGACTTACTTTTTCAACCCCCTATTACAAAAACAAACTGAA--ATATACTGTGAGAACGAAAGTTCTCGCTTTGAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTT-CCTGTGTAGTCAG-GGGAGGAGACGGCCGATGTGAAGTGTCTCG---CGTG------------CGTCGGTTTCTTGGTT-A-TTCTTTTCCAAGAGCACGGCGGTCGAGTCCTTTGAAAACGACACGATCTTTCTTATGGGTTTTGCGACGTGTGTTGGTC-GAACGCGGTGATTTTCGGATCGCTCG--TGGTCGTCGGCGACTTCGGTGAATGCATT-TATGGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGGGTGTGACTTCCGTGTTCGCCTCGAGGTGTACTGGCGGTCGTGGGCTTG-ACCTGTTTGTCGCTGT-------GTAGTAGGCTTGTGCATTGTTTTTGCAGACTCGTCTGCGACTGACGC--TT-TCGGGTGTTGGT--ATTGCAGGAGAAAGCTTG-ATTTGGGAAGTTTTGTGTTT---GTTTTTTGCCTTTCGGGGTGGG-AATA-----------AGCATCTCAA 'STE-U_7549' CCACACCTAAAAA--ACTTTCCACGTGAACTGTCTTACTTAGTTTTGTGCTGTTGTAA--GAGAGTG-T--TCTGTGCGCTTTTGTGTGTGCAAAACA---TTTCTCTGCAACGGCTGAACGAAGGTTGGTG-----GCGTGTTGTCTTT----------------------------------------------------------GA----------GA---CGTACGC--CGCCGGCTGACTTACTTTTTCAACCCC--ATTAC-GAAACAAACTGAA--GTATACTGTGAGAACGAAAGTTCTCGCTTTTAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTT-CCTGTGTAGTCAG-GGGAGGAGACGGCCGATGTGAAGTGTCTCG---CGTG------------CGTCGGTTTCTTGGT--A-TTC-TTTCCAAGAGCACGGCGGTCGAGTCCTTTGAAAACGACACGATCTTTCTTATGGG-TTTGCGACGTGTGTTGGTC-GAACGCGGTGATTTTCGGATCGCTCG--TGGTCGTCGGCGACTTCGGTGAATGCAT--TATGGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGGGTGTGGATTCCGTGTTCGCCTCGAGGTGTACTGGCGGTCGTGGGCTTG-ACCTGTTTGTCGCTGT-------GTAGTAGGCTTGTGCATTG-TTTTGCGGACTCGTCTGCGGCTGACGC--TT-TCGGGTGTTGGTG--TTGCAGGAGAAAGCTTG-ATTTGGGAAGTTTTGTGTTT---GTTGTCCGCCTGTGCGGTCG----ACA-----------TGCATCTCAA 'STE-U_7548' CCACACCTAAAAA--ACTTTCCACGTGAACTGTCTTACTTAGTTTTGCGCTGCTGC-G--GGGAGTG-T--TCTGCGTGCGCTTGCACGGGGAGCGTT---T-TTCTTGCGGCKGCTGAACGAAGGTTGGTG-C--TGTGTGTTGTCTTTTGCGTGCTT-------------------------------------------------GATTGCATGCGGGA---CGTACGCCGCGCCGGCTGACTTACTTTTTCAACCCC--ATTAC-AAAACAAACTGAA--GTATACTGTGAGAACGAAAGTTCTCGCTTTTAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTTCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTT-CCTGTGTAGTCAG-GGGAGGAGACGGCCGATGTGAAGTGTCTCG---CGTG------------CGTCGGTTTCTTGGT--A-TTC-TTTCCAAGAGCACGGCGGTCGAGTCCTTTGAAAACGACACGATCTTTCTTATGGG-TTTGCGACGTGTGTTGGTC-GAACGCGGTGATTTTCGGATCGCTCG--TGGTCGTCGGCGACTTCGGTGAATGCAT--TATGGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGAGTGTGGATTCCGTGTTCGCCTCGAGGTGTACTGGCGGTCGTGGGCTTG-ACCTGTTTGTCGCTGT-------GTAGTAGGCTTGTGCATTG-TTTTGCGGACTCGTCTGCGCCTGACGC--TT-TCGGGTGTTGGTG--TTGCAGGAGAAAGCTTG-ATTTGGGAAGTTTTGTGTTT---GTTGTCCGCCTGTGCGGTCG----ACA-----------TGCATCTCAA 'STE-U_7550' CCACACCTAAAAA--ACTTTCCACGTGAACTGTCTTACTTAGTTTTGCGCTGCTGC-G--GGGAGTG-T--TCTGCGTGCGCTTGCACGGGGAGCGTC---T-TTCTTGCGGCGGCTGAACGAAGGTTGGTG-CTGTGTGTGTTGTCTTTTGCGTGCTT-------------------------------------------------GATTGCATGCGGGA---CGTACGCCGCGCCGGCTGACTTACTTTTTCAACCCC--ATTAC-GAAACAAACTGAA--GTATACTGTGAGAACGAAAGTTCTCGCTTTTAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTT-CCTGTGTAGTCAG-GGGAGGAGACGGCCGATGTGAAGTGTCTCG---CGTG------------CGTCGGTTTCTTGGT--A-TTC-TTTCCAAGAGCACGGCGGTCGAGTCCTTTGAAAACGACACGATCTTTCTTATGGG-TTTGCGACGTGTGTTGGTC-GAACGCGGTGATTTTCGGATCGCTCG--TGGTCGTCGGCGACTTCGGTGAATGCAT--TATGGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGAGTGTGGATTCCGTGTTCGCCTCGAGGTGTACTGGCGGTCGTGGGCTTG-ACCTGTTTGTCGCTGT-------GTAGTAGGCTTGTGCATTG-TTTTGCGGACTCGTCTGCGCCTGACGC--TT-TCGGGTGTTGGTG--TTGCAGGAGAAAGCTTG-ATTTGGGAAGTTTTGTGTTT---GTTGTCCGCCTGTGCGGTCG----ACA-----------TGCATCTCAA 'Pythium_iwayamai_CBS_156.64 ' CCACACCTAAAAA--ACTTTCCACGTGAACTGTCTTACTTAGTTTTGCGCTGCTGT-C--GGGAGTG-T--TCTGCGTGCGCGCTTGCACGGAGAGCG---T-TTCTTGCAACGGCTGAACGAAGGTTGGTG-GCGTCT-TGTCTTCTTT-GCGTGCTT-------------------------------------------------GATTGTATGCGGGAGA-CGTACGC--CGCCGGCTGACTTACTCTTTCAACCCC--ATTAC-GAAACAAACTGAA--GTATACTGTGAGAACGAAAGTTCTCGCTTTGAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTTCCCTGTGTAGTCAG-GGGAGGAGACGGCCGATGTGAAGTGTCTCG---CGTG------------CGTCGGTTTTTGGAT--A--TG-TGTCTAAAAGCACGATGGTCGAGTCCTTTGAAAACGACACGATCTTTCTTATGAG-TTTGCGACGTGTGTTGGTC-GAACGCGGTGATCTTCGGATCGCTCG--TGGTCGTCGGCGACTTCGGTGAATGCATTATATGGAAGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGGGTGTGACTTTCGCGTTCGCCTTGAGGTGTACTGGCGGTTGTGGGCTTG-ATCTGTTGGTTGTCGT-------GTAGTAGACTAGTGCATTG--TTTGTCGATTCGTCTGCAATTGC-----------------------TTGCAGGAGAATGATTG-ATTTGGGACATTTTGTGTTT---GTTGTCCAC-TTTGCGGTGGG-CGACA-----------TACATCTCAA 'STE-U_7553' CCACACCT-AAAA--ACTTTCCACGTGAACTGTCTTACTTAGTTTTGCGCTCTTGT-C--GGGAGTG-TG-TCTGCGTGCGC-TTTGCACGGAGAGCG---TCTTCTTGCAACGGCTGAACGAAGGTTGGTG-AAGTGT-TGTCTCTTTTTGCGTGCTT-------------------------------------------------GATTGTATGCGGGAGACCGTACGC--CGCCGACTGACTTACCTTTTCAACCCCCTATTAC-AAAACAAACTGAA--ATATACTGTGAGAACGAAAGTTCTCGCTTTGAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTT-CCTGTGTAGTCAG-GGGAGGAGACGGCCGATGTGAAGTGTCTCG---CGTG------------CGTCGGTTTCTTGGT--A-TTC-TTTCCAAGAGCACGGCGGTCGAGTCCTTTGAAAACGACACGATCTTTCTTATGAG-TTTGCGACGTGTGTTGGTC-GAACGCGGTGATTTTCGGATCGCTCG--TGGTCGTCGGCGACTTCGGTGAATGCAT--TATGGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGGGTGTTGCTTCCGTGTTCGCCTCGAGGTGTACTGGCGGTTGTGGGCTTG-ATCTGTTGGTTGTTGT-------GTAGTAGACTAGTACATTG--TTTGTAGATTCGTCTGCAATTGC-----------------------TTGCAGGAGAAWGATTG-ATTTGGGACATTTTGTGTTT---GTTATCCAC-TTTGCAGTGGA-CGACA-----------TACATCTCAA 'STE-U_7551' CCACACCTAAAAA--ACTTTCCACGTGAACTGTCTTACTTAGTTTTGCGCTCTTGT-C--GGGAGTG-TGTTCTGCGTGCGC-TTTGCACGGAGAGCG---TCTTCTTGCAACGGCTGAACGAAGGTTGGTG-AAGTGT-TGTCTCTTTTTGCGTGCTT-------------------------------------------------GATTGTATGCGGGAGACCGTACGC--CGCCGACTGACTTACCTTTTCAACCCCCTATTAC-AAAACAAACTGAA--ATATACTGTGAGAACGAAAGTTCTCGCTTTGAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTT-CCTGTGTAGTCAG-GGGAGGAGACGGCCGATGTGAAGTGTCTCG---CGTG------------CGTCGGTTTCTTGGT--A-TTC-TTTCCAAGAGCACGGCGGTCGAGTCCTTTGAAAACGACACGATCTTTCTTATGAG-TTTGCGACGTGTGTTGGTC-GAACGCGGTGATTTTCGGATCGCTCG--TGGTCGTCGGCGACTTCGGTGAATGCAT--TATGGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGGGTGTTGCTTCCGTGTTCGCCTCGAGGTGTACTGGCGGTTGTGGGCTTG-ATCTGTTGGTTGTTGT-------GTAGTAGACTAGTACATTG--TTTGTAGATTCGTCTGCAATTGC-----------------------TTGCAGGAGAATGATTG-ATTTGGGACATTTTGTGTTT---GTTATCCAC-TTTGCAGTGGAGYGACA-----------TACATCTCAA 'STE-U_7552' CCACACCTAAAAA--ACTTTCCACGTGAACTGTCTTACTTAGTTTTGCGCTCTTGT-C--GGGAGTG-TGTTCTGCGTGCGC-TTTGCACGGAGAGCG---TCTTCTTGCAACGGCTGAACGAAGGTTGGTG-AAGTGT-TGTCTCTTTTTGCGTGCTT-------------------------------------------------GATTGTATGCGGGAGACCGTACGC--CGCCGACTGACTTACCTTTTCAACCCCCTATTAC-AAAACAAACTGAA--ATATACTGTGAGAACGAAAGTTCTCGCTTTGAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTT-CCTGTGTAGTCAG-GGGAGGAGACGGCCGATGTGAAGTGTCTCG---CGTG------------CGTCGGTTTCTTGGT--A-TTC-TTTCCAAGAGCACGGCGGTCGAGTCCTTTGAAAACGACACGATCTTTCTTATGAG-TTTGCGACGTGTGTTGGTC-GAACGCGGTGATTTTCGGATCGCTCG--TGGTCGTCGGCGACTTCGGTGAATGCAT--TATGGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGGGTGTTGCTTCCGTGTTCGCCTCGAGGTGTACTGGCGGTTGTGGGCTTG-ATCTGTTGGTTGTTGT-------GTAGTAGACTAGTACATTG--TTTGTAGATTCGTCTGCAATTGC-----------------------TTGCAGGAGAATGATTG-ATTTGGGAYATTTTGTGTTT---GTTATCCAC-TTTGCAGTGGAGTGACA-----------TACATCTCAA 'STE-U_7555' CCACACCTAAAAA--ACTTTCCACGTGAACTGTCTTACTTAGTTTTGCGCTCTTGT-C--GGGAGTG-TGTTCTGCGTGCGC-TTTGCACGGAGAGCG---TCTTCTTGCAACGGCTGAACGAAGGTTGGTG-AAGTGT-TGTCTCTTTTTGCGTGCTT-------------------------------------------------GATTGTATGCGGGAGACCGTACGC--CGCCGACTGACTTACCTTTTCAACCCCCTATTAC-AAAACAAACTGAA--ATATACTGTGAGAACGAAAGTTCTCGCTTTGAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTT-CCTGTGTAGTCAG-GGGAGGAGACGGCCGATGTGAAGTGTCTCG---CGTG------------CGTCGGTTTCTTGGT--A-TTC-TTTCCAAGAGCACGGCGGTCGAGTCCTTTGAAAACGACACGATCTTTCTTATGAG-TTTGCGACGTGTGTTGGTC-GAACGCGGTGATTTTCGGATCGCTCG--TGGTCGTCGGCGACTTCGGTGAATGCAT--TATGGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGGGTGTTGCTTCCGTGTTCGCCTCGAGGTGTACTGGCGGTTGTGGGCTTG-ATCTGTTGGTTGTTGT-------GTAGTAGACTAGTACATTG--TTTGTAGATTCGTCTGCAATTGC-----------------------TTGCAGGAGAATGATTG-ATTTGGGATATTTTGTGTTT---GTTATCCAC-TTTGCAGTGGR-SGACA-----------TACATCTCAA 'STE-U_7558_Clone_2' CCACACCTAAAAA--ACTTTCCACGTGAACTGTCTTACTTAGTTTTGCGCTCTTGT-C--GGGAGTG-TGTTCTGCGTGCGC-TTTGCACGGAGAGCG---TCTTCTTGCAACGGCTGAACGAAGGTTGGTG-AAGTGT-TGTCTCTTTTTGCGTGCTT-------------------------------------------------GATTGTATGCGGGAGACCGTACGC--CGCCGACTGACTTACCTTTTCAACCCCCTATTAC-AAAACAAACTGAA--ATATACTGTGAGAACGAAAGTTCTCGCTTTGAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTT-CCTGTGTAGTCAG-GGGAGGAGACGGCCGATGTGAAGTGTCTCG---CGTG------------CGTCGGTTTCTTGGT--A-TTC-TTTCCAAGAGCACGGCGGTCGAGTCCTTTGAAAACGACACGATCTTTCTTATGAG-TTTGCGACGTGTGTTGGTC-GAACGCGGTGATTTTCGGATCGCTCG--TGGTCGTCGGCGACTTCGGTGAATGCAT--TATGGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGGGTGTTGCTTCCGTGTTCGCCTCGAGGTGTACTGGCGGTTGTGGGCTTG-ATCTGTTGGTTGTTGT-------GTAGTAGACTAGTACATTG--TTTGTAGATTCGTCTGCAATTGC-----------------------TTGCAGGAGAATGATTG-ATTTGGGACATTTTGTGTTT---GTTATCCAC-TTTGCAGTGGA-CGACA-----------TACATCTCAA 'STE-U_7560' CCACACCTAAAAA--ACTTTCCACGTGAACTGTCTTACTTAGTTTTGCGCTCTTGT-C--GGGAGTG-TGTTCTGCGTGCGC-TTTGCACGGAGAGCG---TCTTCTTGCAACGGCTGAACGAAGGTTGGTG-AAGTGT-TGTCTCTTTTTGCGTGCTT-------------------------------------------------GATTGTATGCGGGAGACCGTACGC--CGCCGACTGACTTACCTTTTCAACCCCCTATTAC-AAAACAAACTGAA--ATATACTGTGAGAACGAAAGTTCTCGCTTTGAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTT-CCTGTGTAGTCAG-GGGAGGAGACGGCCGATGTGAAGTGTCTCG---CGTG------------CGTCGGTTTCTTGGT--A-TTC-TTTCCAAGAGCACGGCGGTCGAGTCCTTTGAAAACGACACGATCTTTCTTATGAG-TTTGCGACGTGTGTTGGTC-GAACGCGGTGATTTTCGGATCGCTCG--TGGTCGTCGGCGACTTCGGTGAATGCAT--TATGGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGGGTGTTGCTTCCGTGTTCGCCTCGAGGTGTACTGGCGGTTGTGGGCTTG-ATCTGTTGGTTGTTGT-------GTAGTAGACTAGTACATTG--TTTGTAGATTCGTCTGCAATTGC-----------------------TTGCAGGAGAATGATTG-ATTTGGGACATTTTGTGTTT---GTTATCCAC-TTTGCAGTGGA-CGACA-----------TACATCTCAA 'STE-U_7559' CCACACCTAAAAA--ACTTTCCACGTGAACTGTCTTACTTAGTTTTGCGCTCTTGT-C--GGGAGTG-TGTTCTGCGTGCGC-TTTGCACGGAGAGCG---TCTTCTTGCAACGGCTGAACGAAGGTTGGTG-AAGTGT-TGTCTCTTTTTGCGTGCTT-------------------------------------------------GATTGTATGCGGGAGACCGTACGC--CGCCGACTGACTTACCTTTTCAACCCCCTATTAC-AAAACAAACTGAA--ATATACTGTGAGAACGAAAGTTCTCGCTTTGAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTT-CCTGTGTAGTCAG-GGGAGGAGACGGCCGATGTGAAGTGTCTCG---CGTG------------CGTCGGTTTCTTGGT--A-TTC-TTTCCAAGAGCACGGCGGTCGAGTCCTTTGAAAACGACACGATCTTTCTTATGAG-TTTGCGACGTGTGTTGGTC-GAACGCGGTGATTTTCGGATCGCTCG--TGGTCGTCGGCGACTTCGGTGAATGCAT--TATGGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGGGTGTTGCTTCCGTGTTCGCCTCGAGGTGTACTGGCGGTTGTGGGCTTG-ATCTGTTGGTTGTTGT-------GTAGTAGACTAGTACATTG--TTTGTAGATTCGTCTGCAATTGC-----------------------TTGCAGGAGAATGATTG-ATTTGGGAYATTTTGTGTTT---GTTATCCAC-TTTGCAGTGGA-CGACA-----------TACATCTCAA 'STE-U_7557' CCACACCTAAAAA--ACTTTCCACGTGAACTGTCTTACTTAGTTTTGCGCTCTTGT-C--GGGAGTG-TGTTCTGCGTGCGC-TTTGCACGGAGAGCG---TCTTCTTGCAACGGCTGAACGAAGGTTGGTG-AAGTGT-TGTCTCTTTTTGCGTGCTT-------------------------------------------------GATTGTATGCGGGAGACCGTACGC--CGCCGACTGACTTACCTTTTCAACCCCCTATTAC-AAAACAAACTGAA--ATATACTGTGAGAACGAAAGTTCTCGCTTTGAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTT-CCTGTGTAGTCAG-GGGAGGAGACGGCCGATGTGAAGTGTCTCG---CGTG------------CGTCGGTTTCTTGGT--A-TTC-TTTCCAAGAGCACGGCGGTCGAGTCCTTTGAAAACGACACGATCTTTCTTATGAG-TTTGCGACGTGTGTTGGTC-GAACGCGGTGATTTTCGGATCGCTCG--TGGTCGTCGGCGACTTCGGTGAATGCAT--TATGGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGGGTGTTGCTTCCGTGTTCGCCTCGAGGTGTACTGGCGGTTGTGGGCTTG-ATCTGTTGGTTGTTGT-------GTAGTAGACTAGTACATTG--TTTGTAGATTCGTCTGCAATTGC-----------------------TTGCAGGAGAAWGATTG-ATTTGGGAYATTTTGTGTTT---GTTATCCAC-TTTGCAGTGGA-CGACA-----------TACATCTCAA 'STE-U_7556' CCACACCTAAAAA--ACTTTCCACGTGAACTGTCTTACTTAGTTTTGCGCTCTTGT-C--GGGA--G-TGTTCTGCGTGCGC-TTTGCACGGAGAGCG---TCTTCTTGCAACGGCTGAACGAAGGTTGGTG-AAGTGT-TGTCTCTTTTTGCGTGCTT-------------------------------------------------GATTGTATGCGGGAGACCGTACGC--CGCCGACTGACTTACCTTTTCAACCCCCTATTAC-AAAACAAACTGAA--ATATACTGTGAGAACGAAAGTTCTCGCTTTGAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTT-CCTGTGTAGTCAG-GGGAGGAGACGGCCGATGTGAAGTGTCTCG---CGTG------------CGTCGGTTTCTTGGT--A-TTC-TTTCCAAGAGCACGGCGGTCGAGTCCTTTGAAAACGACACGATCTTTCTTATGAG-TTTGCGACGTGTGTTGGTC-GAACGCGGTGATTTTCGGATCGCTCG--TGGTCGTCGGCGACTTCGGTGAATGCAT--TATGGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGGGTGTTGCTTCCGTGTTCGCCTCGAGGTGTACTGGCGGTTGTGGGCTTG-ATCTGTTGGTTGTTGT-------GTAGTAGACTAGTACATTG--TTTGTAGATTCGTCTGCAATTGC-----------------------TTGCAGGAGAATGATTG-ATTTGGGATATTTTGTGTTT---GTTATCCAC-TTTGCAGTGGR-SGACA-----------TACATCTCAA 'STE-U_7558_Clone_1' CCACACCTAAAAA--ACTTTCCACGTGAACTGTCTTACTTAGTTTTGCGCTCTTGT-C--GGGA--G-TGTTCTGCGTGCGC-TTTGCACGGAGAGCG---TTTTCTTGCAACGGCTGAACGAAGGTTGGTG-AAGTGT-TGTCTCTTTTTGCGTGCTT-------------------------------------------------GATTGTATGCGGGAGACCGTACGC--CGCCGACTGACTTACCTTTTCAACCCCCTATTAC-AAAACAAACTGAA--ATATACTGTGAGAACGAAAGTTCTCGCTTTGAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTCCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTT-CCTGTGTAGTCAG-GGGAGGAGACGGCCGATGTGAAGTGTCTCG---CGTG------------CGTCGGTTTCTTGGT--A-TTC-TTTCCAAGAGCACGGCGGTCGAGTCCTTTGAAAACGACACGATCTTTCTTATGAG-TTTGCGACGTGTGTTGGTC-GAACGCGGTGATTTTCGGATCGCTCG--TGGTCGTCGGCGACTTCGGTGAATGCAT--TATGGAGGAAACCTTGCTTCGCGGTACGTTAGGCTTCGGCTGGACAATGTTGCGTATGTGGGTGTTGCTTCCGTGTTCGCCTCGAGGTGTACTGGCGGTTGTGGGCTTG-ATCTGTTGGTTGTTGT-------GTAGTAGACTAGTACATTG--TTTGTAGATTCGTCTGCAATTGC-----------------------TTGCAGGAGAATGATTG-ATTTGGGATATTTTGTGTTT---GTTATCCAC-TTTGCAGTGGA-CGACA-----------TACATCTCAA 'Pythium_nagaii_CBS_779.96' CCAGACCTAAAAA--ACTTTCCACGTGAACTGTCATGTAACGTTTCGTACT--TGCTGTGTGTTGTGTCGATGTGCATTCATTTGCGTGTCGGCTGCG----C-ACTGGCA--GGTTGAACGAAGGTCGCATTGTGTACTTGCCTGTGTCGCTCTTTTTTTGTTTCCTKTGTGTTGTATTTCGGTACAAGAGAGAGGAGAGAGAGAGAGAGTGCGCGCGGTGTG-TGTGTGCGGTGTCGGCTGACCTATTTTTTCAAACCCAATTACC--TCAAATACTGAT--CAATACTGTGAGAACGAAAGTTCTTGCTTTAAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTTCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTT-TCTGTGTAGTCAGTGAGAGAGAGTTGCAGATGTGAAGTGTCTCGGCCGTTGGCGTGTGTGTGTCGTGTGCTTTTGTTAGCACGTG-GTGCGTCGCGCACTGTGGCCGAGTCCTTTTAAACGGACCCGATCTTTCTTATGTT-TCTGCGACGTGTGGCGCTC-GAACGCGGCGATTTTCGGATCGCTCG--CAGTTGTCGGCGACTTCGGCGAAGACAT--TACGGAGGAAACCTCAATTCGCGGTATGTTAGGCTTCGGTCGGACAATGTTGCTTAT-TGTGTGTGGAATCTGTTTTCGCCTTGAGGTGTACTGGCGGTTGTGGGCTTGTGTCTGTTGGTCGTTATTTTCCGTGTAGTAGAGAGCTGCTTGT-GTGCGTGGATTCTGCCTGTCTCAGTCAGTTCGCTGGCTGTGTG----TGGTAAAAGATAGATTGCATTTGGGAAATGTTGTACTCTTGGTTGTTTGT-GTCTCTGTAATGGAGCGCGGCGGCTTTTTGTATCTCAA 'Pythium_nagaii_P16712 ' CCACACCTAAAAA--ACTTTCCACGTGAACTGTCATGTAACGTTTCGTACT--TGCTGTGTGTTGTGTCGATGTGCATTCATTTGCGTGTCGGCTGCG----C-ACTGTCA--GGTTGAACGAAGGTCGCATTGTGTACTTGCCTGTGTCGTTCTTTTTTTGTTTCCTTTGTGTTGTATTTCGGTACAAGAGAGAGGAGAGAGAGAGAGAGTGCGCGCGGTGTG-TGTGTGCGGTGTCGGCTGACCTATTTTTTCAAACCCAATTACC--TCAAATACTGAT--CAATACTGTGAGAACGAAAGTTCTTGCTTTAAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTTCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAACCTTGCCTTTCTTTT-TCTGTGTAGTCAGTGAGAGAGAGTTGCAGATGTGAAGTGTCTCGGCCGTTGGCGTGTGTGTGTCGTGTGCTTTTGTTAGCACGTG-GTGCGTCGCGCACTGTGGCCGAGTCCTTTTAAACGGACCCGATCTTTCTTATGTT-TCTGCGACGTGTGGCGCTC-GAACGCGGCGATTTTCGGATCGCTCG--CAGTTGTCGGCGACTTCGGCGAAGACAT--TACGGAGGAAACCTCAATTCGCGGTATGTTAGGCTTCGGTCGGACAATGTTGCTTAT-TGTGTGTGGAATCTGTTTTCGCCTTGAGGTGTACTGGCGGTTGTGGGCTTGTGTCTGTTGGTCGTTATTTTCCGTGTAGTAGAGAGCTGCTTGT-GTACGTGGATTCTGCCTGTCTCAGTCAGTTCGCTGGCTGTGTG----TGGTAAAAGATAGATTGCATTTGGGAAATGTTGTACTCTTGGTTGTTTGT-GTCTCTGTAATGGAGCGCGGCGGCTTTTTGTATCTCAA 'Pythium_ultimum_var._ultimum_PPRI8615' CCACACTTTAAAAA-ACTGTCCACGTGAACTGT--AAGCAAGTCTAGCGCTGTGAC-TGAGCTGGTGTTTTCATTTTTGGACACTGGAACGGGAGTC-------------A---GCAGGACGAAGGTTGGTC----------------------TGTTG-------------------------------------------------TAATGCAAGTTA-----TGATGGACTAGCTGATGAACTTTTGTTTTTAAACCC--TTACC---TAAATACTGAT--TTATACTGTGGGGACGAAAGTCCTTGCTTTT-ACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTTCGGGTTATGCCTGGAAGTATGTCTGTATCAGTGTCCGTAAATCAAACTTGCCTTTCTTTT-TCTGTGTAGTCAG-GGATGGAATGTGCAGATGTGAAGTGTCTCG---CATG------------GTTGCGTTCGTTTT------T---T--CGATCGAGAATCTGTCGAGTCCTTTTAAATGGACACGGTCTTTTCTATGGTTTCTATGAAGTGTAATGGTTGGAAGGCAGTGATTTTCGGATTGCTGG--CGGCTTTTGGCGACTTCGGTATGAACG---TATGGAGACTAGCTCAATTCGTGGTATGTTAGGCTTCGGCTCGACAATGTTGCGTAATTGTGTGTGGTCTTTGTTTGTGCCTTGAGGTGTACTAGAGGTTGTCGGTTTG-AACCGTAAGTGATTGT-------TTAGTAGAGCATTTTCACG-ATGTATGGAGACG-CTGCATTTAG-----------------------TTGC-GTAGAGAGATTG-ATTTGGGAAATTTTGTATC----ATTGTCAAT-TGCAAGATTGTGTAT-------------GGTATCTCAA 'Pythium_helicandrum_PPRI8508 ' CCACACCAAAAA---ACTTTCCACGTGAACTGTCTTAACATGTTTTGTGCCTTTAATT----------------------------------------------------A--GGCTAAACGAAGGTCGGAGTAAA--------------------------------------------------------------------------------------------------ATCTGGCTGATCTATCTTTTTAAACCC--CTTAC--TTAATTACTGAT--TTATACTGTGAGGACGAAAGTCTTTGCTTTTAACTAGATAACAACTTTCAGCAGTGGATGTCTAGGCTCGCACATCGATGAAGAACGCTGCGAACTGCGATACGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAAATTTTGAACGCATATTGCACTTTCGGGTTATACCTGGAAGTATGTCTGTATCAGTGTCCGTACAATAAACTTGCCTTTCTTTT-TCTGTGTAGTCAG-TGATAGAGATGGCCGATGTGAAGTGTCTCGATCTGTG------------CATAT-----TTTT------T---T----ATGACACATTGATCGAGTCCTTTTAAATGTACACTGTTTTTTCTCTTGTTTCTATGA-G-GTACTGCTC-GAACGGAGTGATCTTGTGATTGCTTGCATGTTTGGTGGCAACTTCGGTTTAGACGC--TAGGGGTTAATGCTCGATTCGCGGTATGTTAGGCTTCGGCTGGACAATGTTGCTTAT-TAGGCGTTGACTCTGTTTTTACCTTGAGGTACCATTATTTGTGTGAGATGT-GTCTATGGATTGCTTG-------CAAGTAAGGTGTTGCTTGATAGTTACG-----------CTTTGATGCTGCTTTTCGGAGTGGTGTGAAGGTTGAGGATAGCACAATTTGGGAAAATTTTGTACACTGTTATGTATGT-AACTG-----------------------TGTATCTCAA ; END; BEGIN ASSUMPTIONS; TYPESET * UNTITLED = unord: 1 - 1015; END; BEGIN TREES; Title 'Trees from "ITS.tre"'; LINK Taxa = Taxa; TRANSLATE 1 'Pythium_paddicum_AB217667.1 ', 2 'Pythium_paddicum_CBS_698.83 ', 3 'Pythium_iwayamai_AB299388.1 ', 4 'Pythium_iwayamai_CBS_697.83 ', 5 'Pythium_okanoganense_CBS_701.83', 6 'Pythium_okanoganense_CBS_315.81', 7 'Pythium_polare_AB299394.1 ', 8 'Pythium_polare_AB299395.1 ', 9 'Pythium_sp._Ro21_AY129553.1 ', 10 'Pythium_sp._PB-2007_AM489757.1 ', 11 'Pythium_sp._6_eu_EU038812.1 ', 12 'Pythium_sp._WJB-1_PPRI8300', 13 'Pythium_violae_CBS_159.64 ', 14 'Pythium_canariense_CBS_112353 ', 15 'Pythium_aff._canariense_OW1707 ', 16 'STE-U_7549', 17 'STE-U_7548', 18 'STE-U_7550', 19 'Pythium_iwayamai_CBS_156.64 ', 20 'STE-U_7553', 21 'STE-U_7551', 22 'STE-U_7552', 23 'STE-U_7555', 24 'STE-U_7558_Clone_2', 25 'STE-U_7560', 26 'STE-U_7559', 27 'STE-U_7557', 28 'STE-U_7556', 29 'STE-U_7558_Clone_1', 30 'Pythium_nagaii_CBS_779.96', 31 'Pythium_nagaii_P16712 ', 32 'Pythium_ultimum_var._ultimum_PPRI8615', 33 'Pythium_helicandrum_PPRI8508 '; TREE PAUP_2 = (((((((1:0.0,2:0.0):6.0,(3:0.0,4:0.0):7.0):5.0,5:6.0):18.0,6:22.0):40.0,((7:1.0,8:0.0,9:0.0,10:1.0):27.0,((11:27.0,12:44.0):31.0,(((13:14.0,14:14.0):8.0,((15:16.0,16:3.0):13.0,(17:3.0,18:0.0):13.0):12.0):16.0,(19:21.0,(20:0.0,21:0.0,(22:1.0,23:0.0,26:0.0,27:0.0,28:0.0,29:1.0):1.0,24:0.0,25:0.0):14.0):12.0):24.0):23.0):34.0):87.0,(30:1.0,31:3.0):87.0):67.0,(32:75.0,33:98.0):53.0):0.0; END; BEGIN CODONS; CODESET * UNTITLED = universal: 1 - 1015; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Jukes-Cantor': 1 - 1015; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1362319940877; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 7943732257131387049; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 5276973723431472847; checksumv 0 2 2779500569 null numChars 1015 short true bits 2305843009213693967 states 15 sumSquaresStatesOnly 740544.0 NumFiles 1 NumMatrices 1; endTell; getWindow; tell It; suppress; setResourcesState true false 292; setPopoutState 400; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 700 464; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setActive; desuppress; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #5276973723431472847 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 0 -67; setLocation 8 22; setFont SanSerif; setFontSize 10; getToolPalette; tell It; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.ColorByState.ColorByState; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges off; toggleSeparateLines off; toggleShowStates on; toggleAutoWCharNames off; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleAllowAutosize off; toggleColorsPanel off; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; getWindow; tell It; forceAutosize; endTell; hideWindow; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.align.AlignToDropped.AlignToDropped; tell It; gapCosts 8 3 2 2; subCosts 10 5 10 10 10 5 5 10 10 10 5 10; endTell; getEmployee #mesquite.molec.ColorByAA.ColorByAA; tell It; emphasizeDegeneracy off; endTell; getEmployee #mesquite.molec.SequenceInfoEditor.SequenceInfoEditor; tell It; panelOpen false; endTell; endTell; endTell; endTell; end;