#NEXUS [written Thu May 07 17:27:02 EDT 2020 by Mesquite version 3.61 (build 927) at zioped/127.0.1.1 (George D.F. Wilson, Saugatuck Natural History Laboratory)] BEGIN TAXA; TITLE Eophreatoicus_and_Kakadubeh; DIMENSIONS NTAX=36; TAXLABELS Mesamphisopus_capensis Amphisopus_lintoni Amphisopus_annectans Paramphisopus_palustris Phreatomerus_sp._Deadwoman_Spgs Eremisopus_beei Kakadubeh_rangemyahwurd Eophreatoicus_kershawi Eophreatoicus_mok Eophreatoicus_kudjamarndi Eophreatoicus_bodmemurrngkudji Eophreatoicus_kurdabeyhmay Eophreatoicus_gudjangah Eophreatoicus_indjangarlwurr Eophreatoicus_karrkkanj Eophreatoicus_ngarradj Eophreatoicus_mawoenewoene Eophreatoicus_binjdjarrang Eophreatoicus_djirrinjbal Eophreatoicus_boywek Eophreatoicus_kudjaldordo Eophreatoicus_djurrukunja Eophreatoicus_warnbi Eophreatoicus_kurrih Eophreatoicus_galunggul Eophreatoicus_nawurlandja Eophreatoicus_nawurlandja_Ga Eophreatoicus_korokoro Eophreatoicus_gubara Eophreatoicus_namarrkon Eophreatoicus_namimminya Eophreatoicus_namarden Eophreatoicus_barrkmarlam Eophreatoicus_balbun Eophreatoicus_warddebarrarn Eophreatoicus_wurrkbaba ; END; BEGIN CHARACTERS; TITLE 20190321morphA; DIMENSIONS NCHAR=160; FORMAT DATATYPE = STANDARD RESPECTCASE GAP = - MISSING = ? SYMBOLS = " 1 2 3 4 5 6 7 8"; MATRIX Mesamphisopus_capensis 11122--21221213(1 2)11111111111112113122-2321121---141322-11--2116--------1-1---1?1121(1 2)11133212121112222112111122113322122?11211-211121231111--11223123111113222-322 Amphisopus_lintoni 31112--2124233212-111111111112312112-1-21211---141322-321-1223142113113-1---4111213111334?142211222312212----------132?22211-22131123312221112211221121131111321 Amphisopus_annectans 31112--2124231212-1111111111??31?132-1-21211---141322-321-1223142113113-1---4111213111334-242211222312212----------13??22211-222411233122211122112?1??1131?11321 Paramphisopus_palustris 11112----14313212-1222111112--222122-2-11121---141322-12211223242113121-122?63132111113341142?1112231222111221133222-2?11211-2123112332----11211121113111222-222 Phreatomerus_sp._Deadwoman_Spgs 11122--2-23123212-1111111112--322112-1-21121---141322-31--2223242113121-222-6312211111233-231211221211--2----------2-2?1122222212112332----1121112?1121142212212 Eremisopus_beei 11122--21241132112111111243112312311-222121243-112332-221-2123332111111-121141312132?223221221221243121211122111122112?112222211122211111--1122112311?1121212322 Kakadubeh_rangemyahwurd 33112--212112-3112111121111112214132-2321121-4-111242-22211123243212211-13233111311312222112222211-31111111111134112-122122222?1421312112--11211122123113122-312 Eophreatoicus_kershawi 11122--2?2331221121111112422--313232-2121122241112322-22222123132131221-2223311421121222221221221??31111121111133111111112221211421221111--11223123112112222-312 Eophreatoicus_mok 11122--2?2421221121111112132--312332-2221122141112322-222221231311-1211-2323511422-2122?221?2?2?1??3111112?1?1?4?1?1122112221213421221111--11223123112113222-312 Eophreatoicus_kudjamarndi 12122--212411321111111111112--213132-2121122141112322-22222123132111211-23335114211212223212222212431111111221143111122112221211421221111--1122312311?113222-312 Eophreatoicus_bodmemurrngkudji 11122--212421321121111111132--211332-232112224?112342-222221231311-1211-2333331422-222223212212212331111122221134111132112221211121222111--11223123123113222-312 Eophreatoicus_kurdabeyhmay 11212--212411221121111111421??214232-222112234-112342-222221231311-1211-232351142113122222122122123311111111111221111111122212?1421221111--11223123111113212-312 Eophreatoicus_gudjangah 11222--212411221121111123421??213232-2221122241112342-222221231311-1211-232151142113122222122112223311111111111441111121122212?2421221111--11223123112113112-312 Eophreatoicus_indjangarlwurr 11122--212321221121111124421??213232-2221122122112342-222221231311-1211-232351142112122222132121224311111221111331111111122212?1421221111--11223123112113112-312 Eophreatoicus_karrkkanj 12422--21232122112111112313112214332-2221122241112322-222221231311-1211-132151142112122222132121123311111331111441111111122212?1421221111--11223123112113112-312 Eophreatoicus_ngarradj 11122--212331211121111121132--212332-2321122221112342-22222123132111211-232331142112122222122111124311111231111441111111122212?1421221111--11223122113113112-312 Eophreatoicus_mawoenewoene 11122--212331211121111121131??213332-232112224?112342-22222123132111211-132331142112122222122112123311111221111441111211122212?1421221111--11223122112113112-312 Eophreatoicus_binjdjarrang 11122--212431221121111113421??211232-2321122222112342-22222123132111211-232331142112122222122111223311111111111332111121122212?1421222111--11223122111113112-312 Eophreatoicus_djirrinjbal 11122--212311221121111123131??213332-2221122142112322-222221231311-1211-2321511422-2122222122111123311111331111441111111122212?1421221111--11223123122113212-312 Eophreatoicus_boywek 11122--212411221121111123421??211232-2121122242112342-222221231311-1211-2323511421321222221221112233111111211113(3 4)2111121122212?2421221111--11223122112113112-312 Eophreatoicus_kudjaldordo 11122--212311221121111112121??213232-2321122122112342-222221231311-1211-232331142112222222122111123311111112211332211321122212?1421221111--1122312(3 4)111113212-312 Eophreatoicus_djurrukunja 11122--212321221121111114421??211232-2221122142112142-222221231311-1211-232351142112222222122211123311111121111441111121122212?1421221111--11221122113113112-312 Eophreatoicus_warnbi 11122--21231121112111111342112213232-222112222-112342-22222123132121211-232131142112122222122111123311111111111332111111122212?1421221111--11221122111113112-312 Eophreatoicus_kurrih 11122--21231122111111112342112213232-23(2 3)1122122112342-222221231311-1211-132351142112122222122122123311111331111441111121122212?1421221111--11223122113113112-312 Eophreatoicus_galunggul 11112--212331211121111121421??213232-2221121-1-112342-222221231311-1211-232331142112122222122121123311111231111441111111122212?1421221111--11223122123113112-312 Eophreatoicus_nawurlandja 11122--212421211121111123422--213232-2221122121112342-222221231311-(1 3)211-232351142113122222132111123311111321111441111111122212?2421221111--11223122122113112-312 Eophreatoicus_nawurlandja_Ga 11122--212421211121111123422--213232-2221122121112342-222221231311-1211-232351142112122222132111123311111221111441111111122212?2421221111--11223122111113112-312 Eophreatoicus_korokoro 13122--212321211121111121422--213232-232112224-112342-22222123132113211-2323(2 3)31421?21222??1221221233??11111211122111121112221??1?21221111--11223122111113112-312 Eophreatoicus_gubara 11122--21241122112111112342112212222-2321122242112322-222221231311-1211-222331142112122222122122123311111131111331111121122212?1421221111--11221122112113212-322 Eophreatoicus_namarrkon 11122--212331211121111121111??212152-2221122(2 3)2?112342-22222123132131211-232131142112122222122122123311111331111551111111122212?1421221111--11223121112113112-312 Eophreatoicus_namimminya 13122--212431221121111121131??213332-222112232-112342-22222123132113211-232151142132122222122121124311111221111441111111122212?1421221111--11223122111113112-312 Eophreatoicus_namarden 1(1 2)1211221242122112111111544112211232-222112224?112342-222121231311-3211-132351142112122222122122123311111112111221111121122212?1421221111--11222124111113212-312 Eophreatoicus_barrkmarlam 11322--212311221121111122121??211232-2?21122122112322-222221231311-1211-23233124211212222212212212331111122111133111121112221211421221111--11221122111113212-322 Eophreatoicus_balbun 11122--2?2223311121111122132--211232-2311122222112312-222221231311-1211-2323332421121232221221?112331111111221133111121112221211421221111--11221122112113212-312 Eophreatoicus_warddebarrarn 11122--2?2321221111111121122--213232-232112232-112322-222221231311-1211-232131142111122?2212??2?1??311111111211331111111122212?142?221111--11222122111113112-312 Eophreatoicus_wurrkbaba 11422--212431221121111121131??211332-2231122122112342-222221231311-1211-232131142112122222122122223311111131111(3 4)41111111122212?1421221111--11232122121113112-(1 3)12 ; END; BEGIN TREES[!'Parameters: Trees obtained from file 20190321_morphA-tre.nex^n13 trees.']; Title 'morphA outgroups 20190321 = wts'; ID GW169a0c82f7121; LINK Taxa = Eophreatoicus_and_Kakadubeh; TRANSLATE [0] n0 Mesamphisopus_capensis, [1] n1 Amphisopus_lintoni, [2] n2 Amphisopus_annectans, [3] n3 Paramphisopus_palustris, [4] n4 Phreatomerus_sp._Deadwoman_Spgs, [5] n5 Eremisopus_beei, [6] n6 Kakadubeh_rangemyahwurd, [7] n7 Eophreatoicus_kershawi, [8] n8 Eophreatoicus_mok, [9] n9 Eophreatoicus_kudjamarndi, [10] n10 Eophreatoicus_bodmemurrngkudji, [11] n11 Eophreatoicus_kurdabeyhmay, [12] n12 Eophreatoicus_gudjangah, [13] n13 Eophreatoicus_indjangarlwurr, [14] n14 Eophreatoicus_karrkkanj, [15] n15 Eophreatoicus_ngarradj, [16] n16 Eophreatoicus_mawoenewoene, [17] n17 Eophreatoicus_binjdjarrang, [18] n18 Eophreatoicus_djirrinjbal, [19] n19 Eophreatoicus_boywek, [20] n20 Eophreatoicus_kudjaldordo, [21] n21 Eophreatoicus_djurrukunja, [22] n22 Eophreatoicus_warnbi, [23] n23 Eophreatoicus_kurrih, [24] n24 Eophreatoicus_galunggul, [25] n25 Eophreatoicus_nawurlandja, [26] n26 Eophreatoicus_nawurlandja_Ga, [27] n27 Eophreatoicus_korokoro, [28] n28 Eophreatoicus_gubara, [29] n29 Eophreatoicus_namarrkon, [30] n30 Eophreatoicus_namimminya, [31] n31 Eophreatoicus_namarden, [32] n32 Eophreatoicus_barrkmarlam, [33] n33 Eophreatoicus_balbun, [34] n34 Eophreatoicus_warddebarrarn, [35] n35 Eophreatoicus_wurrkbaba; TREE 'tnt 1++' = (n0,(((n1,n2),(n3,n4)),(n5,(n6,(n9,(n10,(n8,(n7,(((n27,(n11,n31)),(n34,(n32,n33))),(n28,((n20,(n17,n22)),((n12,n19),(n21,((n13,(n25,n26)),((n23,n24),((n14,n18),(n30,(n35,(n29,(n15,n16)))))))))))))))))))); TREE 'tnt 2++' = (n0,(((n1,n2),(n3,n4)),(n5,(n6,(n9,(n10,(n8,(n7,(((n27,(n11,n31)),(n34,(n32,n33))),(n28,((n20,(n17,n22)),((n12,n19),(n21,((n25,n26),(n13,((n23,n24),((n14,n18),((n30,n35),(n29,(n15,n16)))))))))))))))))))); TREE 'tnt 3++' = (n0,(((n1,n2),(n3,n4)),(n5,(n6,(n9,(n10,(n8,(n7,((n32,n33),(n34,((n27,(n11,n31)),((n20,(n17,n22)),(n28,(n23,((n21,(n12,n19)),(n24,((n13,(n25,n26)),((n14,n18),(n30,(n35,(n29,(n15,n16)))))))))))))))))))))); TREE 'tnt 4++' = (n0,(((n1,n2),(n3,n4)),(n5,(n6,(n9,(n10,(n8,(n7,(((n27,(n11,n31)),(n34,(n32,n33))),(n28,((n20,(n17,n22)),((n12,n19),(n21,((n13,(n25,n26)),((n23,n24),((n14,n18),((n30,n35),(n29,(n15,n16))))))))))))))))))); TREE 'tnt 5++' = (n0,(((n1,n2),(n3,n4)),(n5,(n6,(n9,(n10,(n8,(n7,((n32,n33),(n34,((n27,(n11,n31)),((n20,(n17,n22)),(n28,(n23,((n21,(n12,n19)),(n13,((n25,n26),(n24,((n29,(n15,n16)),((n14,n18),(n30,n35))))))))))))))))))))); TREE 'tnt 6++' = (n0,(((n1,n2),(n3,n4)),(n5,(n6,(n9,(n10,(n8,(n7,((n32,n33),(n34,((n27,(n11,n31)),((n20,(n17,n22)),(n28,(n23,((n21,(n12,n19)),(n24,((n13,(n25,n26)),((n14,n18),((n30,n35),(n29,(n15,n16))))))))))))))))))))); TREE 'tnt 7++' = (n0,(((n1,n2),(n3,n4)),(n5,(n6,(n9,(n10,(n8,(n7,((n32,n33),(n34,((n27,(n11,n31)),((n20,(n17,n22)),(n28,(n23,((n21,(n12,n19)),((n13,(n25,n26)),(n24,(n30,((n14,n18),(n35,(n29,(n15,n16)))))))))))))))))))))); TREE 'tnt 8++' = (n0,(((n1,n2),(n3,n4)),(n5,(n6,(n9,(n10,(n8,(n7,((n32,n33),(n34,((n27,(n11,n31)),((n20,(n17,n22)),(n28,(n23,((n21,(n12,n19)),((n13,(n25,n26)),(n24,((n14,n18),(n30,(n35,(n29,(n15,n16)))))))))))))))))))))); TREE 'tnt 9++' = (n0,(((n1,n2),(n3,n4)),(n5,(n6,(n9,(n10,(n8,(n7,((n32,n33),(n34,((n27,(n11,n31)),((n20,(n17,n22)),(n28,(n23,((n21,(n12,n19)),((n13,(n25,n26)),(n24,((n29,(n15,n16)),((n14,n18),(n30,n35)))))))))))))))))))); TREE 'tnt 10++' = (n0,(((n1,n2),(n3,n4)),(n5,(n6,(n9,(n10,(n8,(n7,((n32,n33),(n34,((n27,(n11,n31)),((n20,(n17,n22)),(n28,(n23,((n21,(n12,n19)),((n13,(n25,n26)),(n24,((n14,n18),((n30,n35),(n29,(n15,n16))))))))))))))))))))); TREE 'tnt 11++' = (n0,(((n1,n2),(n3,n4)),(n5,(n6,(n9,(n10,(n8,(n7,(((n27,(n11,n31)),(n34,(n32,n33))),(n28,((n20,(n17,n22)),((n12,n19),(n21,((n25,n26),(n13,((n23,n24),((n14,n18),(n30,(n35,(n29,(n15,n16))))))))))))))))))))); TREE 'tnt 12++' = (n0,(((n1,n2),(n3,n4)),(n5,(n6,(n9,(n10,(n8,(n7,(((n27,(n11,n31)),(n34,(n32,n33))),(n28,((n20,(n17,n22)),((n12,n19),(n21,(n23,(n24,((n13,(n25,n26)),((n14,n18),(n30,(n35,(n29,(n15,n16))))))))))))))))))))); END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE = unord PolyTCount = MINSTEPS; TYPESET * UNTITLED = unord: 1- 160; END; BEGIN PAUP; SET MSTAXA = POLYMORPH TCOMPRESS = YES INCREASE = AUTO TAXLABELS = FULL TORDER = RIGHT OUTROOT = PARAPHYL AUTOCLOSE = YES; OUTGROUP 1 - 4; hsearch addseq = random nchuck = 3 chuckscore = 1 nreps = 100 randomize = trees; hsearch start = current nchuck = 0 chuckscore = 0; savetrees / brlens = yes; contree; describe 1 / noplot; END; BEGIN SETS; TAXPARTITION * UNTITLED = outgroup : 1- 6, Kakadubeh : 7, Eophreatoicus : 8- 36; END; BEGIN AUTHORS; AUTHOR NAME = 'George D.F. Wilson, Saugatuck Natural History Laboratory' CODE = GW LASTSAVER; END; BEGIN TREES[!'Parameters: Trees obtained from file 20190321_morphAjactre33.nex^n3 trees.']; Title 'Fig 10A morphA outgroups =wts jac33 group freq'; ID GW169a5e57c3816; LINK Taxa = Eophreatoicus_and_Kakadubeh; TRANSLATE [0] 1 Mesamphisopus_capensis, [1] 2 Amphisopus_lintoni, [2] 3 Amphisopus_annectans, [3] 4 Paramphisopus_palustris, [4] 5 Phreatomerus_sp._Deadwoman_Spgs, [5] 6 Eremisopus_beei, [6] 7 Kakadubeh_rangemyahwurd, [7] 8 Eophreatoicus_kershawi, [8] 9 Eophreatoicus_mok, [9] 10 Eophreatoicus_kudjamarndi, [10] 11 Eophreatoicus_bodmemurrngkudji, [11] 12 Eophreatoicus_kurdabeyhmay, [12] 13 Eophreatoicus_gudjangah, [13] 14 Eophreatoicus_indjangarlwurr, [14] 15 Eophreatoicus_karrkkanj, [15] 16 Eophreatoicus_ngarradj, [16] 17 Eophreatoicus_mawoenewoene, [17] 18 Eophreatoicus_binjdjarrang, [18] 19 Eophreatoicus_djirrinjbal, [19] 20 Eophreatoicus_boywek, [20] 21 Eophreatoicus_kudjaldordo, [21] 22 Eophreatoicus_djurrukunja, [22] 23 Eophreatoicus_warnbi, [23] 24 Eophreatoicus_kurrih, [24] 25 Eophreatoicus_galunggul, [25] 26 Eophreatoicus_nawurlandja, [26] 27 Eophreatoicus_nawurlandja_Ga, [27] 28 Eophreatoicus_korokoro, [28] 29 Eophreatoicus_gubara, [29] 30 Eophreatoicus_namarrkon, [30] 31 Eophreatoicus_namimminya, [31] 32 Eophreatoicus_namarden, [32] 33 Eophreatoicus_barrkmarlam, [33] 34 Eophreatoicus_balbun, [34] 35 Eophreatoicus_warddebarrarn, [35] 36 Eophreatoicus_wurrkbaba; TREE Figure_11B_morphA_K12_group_frequencies_collapsed = (1,(((2,3)[%bootstrapFrequency = 100 ],(4,5)[%bootstrapFrequency = 75 ])[%bootstrapFrequency = 91 ],(6,(7,(10,(11,(9,(8,(((28,(12,32)[%bootstrapFrequency = 48 ])[%bootstrapFrequency = 13 ],(35,(33,34)[%bootstrapFrequency = 31 ])[%bootstrapFrequency = 11 ])[%bootstrapFrequency = 0.0 ],29,(21,(18,23)[%bootstrapFrequency = 34 ])[%bootstrapFrequency = 17 ],(13,20)[%bootstrapFrequency = 26 ],22,(14,(26,27)[%bootstrapFrequency = 92 ])[%bootstrapFrequency = 19 ],24,25,((15,19)[%bootstrapFrequency = 65 ],(31,36,(30,(16,17)[%bootstrapFrequency = 41 ])[%bootstrapFrequency = 21 ])[%bootstrapFrequency = 14 ])[%bootstrapFrequency = 13 ])[%bootstrapFrequency = 18 ])[%bootstrapFrequency = 22 ])[%bootstrapFrequency = 23 ])[%bootstrapFrequency = 36 ])[%bootstrapFrequency = 63 ])[%bootstrapFrequency = 81 ])[%bootstrapFrequency = 96 ])[%bootstrapFrequency = 100 ])[% ] [% ] [% setBetweenDouble = bootstrapFrequency ]; END; BEGIN TREES[!'Parameters: Trees obtained from file 20190321_morphA_K12jactre33.nex^n2 trees.']; Title 'Fig10B morphA outgroups K=12 jac 33 group freq'; ID GW169da9b893a25; LINK Taxa = Eophreatoicus_and_Kakadubeh; TRANSLATE [0] 1 Mesamphisopus_capensis, [1] 2 Amphisopus_lintoni, [2] 3 Amphisopus_annectans, [3] 4 Paramphisopus_palustris, [4] 5 Phreatomerus_sp._Deadwoman_Spgs, [5] 6 Eremisopus_beei, [6] 7 Kakadubeh_rangemyahwurd, [7] 8 Eophreatoicus_kershawi, [8] 9 Eophreatoicus_mok, [9] 10 Eophreatoicus_kudjamarndi, [10] 11 Eophreatoicus_bodmemurrngkudji, [11] 12 Eophreatoicus_kurdabeyhmay, [12] 13 Eophreatoicus_gudjangah, [13] 14 Eophreatoicus_indjangarlwurr, [14] 15 Eophreatoicus_karrkkanj, [15] 16 Eophreatoicus_ngarradj, [16] 17 Eophreatoicus_mawoenewoene, [17] 18 Eophreatoicus_binjdjarrang, [18] 19 Eophreatoicus_djirrinjbal, [19] 20 Eophreatoicus_boywek, [20] 21 Eophreatoicus_kudjaldordo, [21] 22 Eophreatoicus_djurrukunja, [22] 23 Eophreatoicus_warnbi, [23] 24 Eophreatoicus_kurrih, [24] 25 Eophreatoicus_galunggul, [25] 26 Eophreatoicus_nawurlandja, [26] 27 Eophreatoicus_nawurlandja_Ga, [27] 28 Eophreatoicus_korokoro, [28] 29 Eophreatoicus_gubara, [29] 30 Eophreatoicus_namarrkon, [30] 31 Eophreatoicus_namimminya, [31] 32 Eophreatoicus_namarden, [32] 33 Eophreatoicus_barrkmarlam, [33] 34 Eophreatoicus_balbun, [34] 35 Eophreatoicus_warddebarrarn, [35] 36 Eophreatoicus_wurrkbaba; TREE 'Figure 10B morphA outgroups K=12 jac33 group freq collapsed+' = (1,(((2,3)[%bootstrapFrequency = 99 ],(4,5)[%bootstrapFrequency = 70 ])[%bootstrapFrequency = 92 ],(6,(7,(10,(11,(9,(8,((33,34)[%bootstrapFrequency = 39 ],35,(28,(12,32)[%bootstrapFrequency = 39 ])[%bootstrapFrequency = 24 ],(21,(18,23)[%bootstrapFrequency = 46 ])[%bootstrapFrequency = 24 ],29,24,(22,(13,20)[%bootstrapFrequency = 29 ])[%bootstrapFrequency = 5 ],(25,(14,(26,27)[%bootstrapFrequency = 91 ])[%bootstrapFrequency = 25 ])[%bootstrapFrequency = 2 ],((15,19)[%bootstrapFrequency = 53 ],31,36,(30,(16,17)[%bootstrapFrequency = 46 ])[%bootstrapFrequency = 21 ])[%bootstrapFrequency = 16 ])[%bootstrapFrequency = 23 ])[%bootstrapFrequency = 26 ])[%bootstrapFrequency = 32 ])[%bootstrapFrequency = 34 ])[%bootstrapFrequency = 73 ])[%bootstrapFrequency = 75 ])[%bootstrapFrequency = 96 ])[%bootstrapFrequency = 100 ])'/'[% ] [% ] [% setBetweenDouble = bootstrapFrequency ]; END; BEGIN TREES[!'Parameters: Trees obtained from file 20190321_morphAno-tre.nex^n5 trees.']; Title 'morphA no outgroups 20190321= wts '; ID GW169a0e5587a27; LINK Taxa = Eophreatoicus_and_Kakadubeh; TRANSLATE [0] n0 Mesamphisopus_capensis, [1] n1 Amphisopus_lintoni, [2] n2 Amphisopus_annectans, [3] n3 Paramphisopus_palustris, [4] n4 Phreatomerus_sp._Deadwoman_Spgs, [5] n5 Eremisopus_beei, [6] n6 Kakadubeh_rangemyahwurd, [7] n7 Eophreatoicus_kershawi, [8] n8 Eophreatoicus_mok, [9] n9 Eophreatoicus_kudjamarndi, [10] n10 Eophreatoicus_bodmemurrngkudji, [11] n11 Eophreatoicus_kurdabeyhmay, [12] n12 Eophreatoicus_gudjangah, [13] n13 Eophreatoicus_indjangarlwurr, [14] n14 Eophreatoicus_karrkkanj, [15] n15 Eophreatoicus_ngarradj, [16] n16 Eophreatoicus_mawoenewoene, [17] n17 Eophreatoicus_binjdjarrang, [18] n18 Eophreatoicus_djirrinjbal, [19] n19 Eophreatoicus_boywek, [20] n20 Eophreatoicus_kudjaldordo, [21] n21 Eophreatoicus_djurrukunja, [22] n22 Eophreatoicus_warnbi, [23] n23 Eophreatoicus_kurrih, [24] n24 Eophreatoicus_galunggul, [25] n25 Eophreatoicus_nawurlandja, [26] n26 Eophreatoicus_nawurlandja_Ga, [27] n27 Eophreatoicus_korokoro, [28] n28 Eophreatoicus_gubara, [29] n29 Eophreatoicus_namarrkon, [30] n30 Eophreatoicus_namimminya, [31] n31 Eophreatoicus_namarden, [32] n32 Eophreatoicus_barrkmarlam, [33] n33 Eophreatoicus_balbun, [34] n34 Eophreatoicus_warddebarrarn, [35] n35 Eophreatoicus_wurrkbaba; TREE 'tnt 1++' = (n6,((n11,n31),((n28,(n12,n19)),(((n20,(n17,n22)),(n27,(n34,((n32,n33),(n7,(n8,(n9,n10))))))),(n23,(n21,(n24,((n13,(n25,n26)),((n14,n18),(n30,(n35,(n29,(n15,n16))))))))))))); TREE 'tnt 2++' = (n6,((n11,n31),((n28,(n12,n19)),(((n20,(n17,n22)),(n27,(n34,((n32,n33),(n7,(n8,(n9,n10))))))),(n23,(n21,(n24,((n13,(n25,n26)),((n14,n18),((n30,n35),(n29,(n15,n16)))))))))))); TREE 'tnt 3++' = (n6,((n11,n31),(((n12,n19),(n28,((n20,(n17,n22)),(n27,(n34,((n32,n33),(n7,(n8,(n9,n10))))))))),(n23,(n21,(n24,((n13,(n25,n26)),((n14,n18),(n30,(n35,(n29,(n15,n16)))))))))))); TREE 'tnt 4++' = (n6,((n11,n31),(((n12,n19),(n28,((n20,(n17,n22)),(n27,(n34,((n32,n33),(n7,(n8,(n9,n10))))))))),(n23,(n21,(n24,((n13,(n25,n26)),((n14,n18),((n30,n35),(n29,(n15,n16))))))))))); END; BEGIN TREES[!'Parameters: Trees obtained from file 20190321_morphAnojactre33.nex^n3 trees.']; Title 'Fig 11A morphA no outgroups =wts jac 33 group freq'; ID GW169a608937b22; LINK Taxa = Eophreatoicus_and_Kakadubeh; TRANSLATE [0] 1 Mesamphisopus_capensis, [1] 2 Amphisopus_lintoni, [2] 3 Amphisopus_annectans, [3] 4 Paramphisopus_palustris, [4] 5 Phreatomerus_sp._Deadwoman_Spgs, [5] 6 Eremisopus_beei, [6] 7 Kakadubeh_rangemyahwurd, [7] 8 Eophreatoicus_kershawi, [8] 9 Eophreatoicus_mok, [9] 10 Eophreatoicus_kudjamarndi, [10] 11 Eophreatoicus_bodmemurrngkudji, [11] 12 Eophreatoicus_kurdabeyhmay, [12] 13 Eophreatoicus_gudjangah, [13] 14 Eophreatoicus_indjangarlwurr, [14] 15 Eophreatoicus_karrkkanj, [15] 16 Eophreatoicus_ngarradj, [16] 17 Eophreatoicus_mawoenewoene, [17] 18 Eophreatoicus_binjdjarrang, [18] 19 Eophreatoicus_djirrinjbal, [19] 20 Eophreatoicus_boywek, [20] 21 Eophreatoicus_kudjaldordo, [21] 22 Eophreatoicus_djurrukunja, [22] 23 Eophreatoicus_warnbi, [23] 24 Eophreatoicus_kurrih, [24] 25 Eophreatoicus_galunggul, [25] 26 Eophreatoicus_nawurlandja, [26] 27 Eophreatoicus_nawurlandja_Ga, [27] 28 Eophreatoicus_korokoro, [28] 29 Eophreatoicus_gubara, [29] 30 Eophreatoicus_namarrkon, [30] 31 Eophreatoicus_namimminya, [31] 32 Eophreatoicus_namarden, [32] 33 Eophreatoicus_barrkmarlam, [33] 34 Eophreatoicus_balbun, [34] 35 Eophreatoicus_warddebarrarn, [35] 36 Eophreatoicus_wurrkbaba; TREE 'Figure 11A morphA =wts jac33 group frequencies collapsed+' = (7,((12,32)[%bootstrapFrequency = 44 ],29,(13,20)[%bootstrapFrequency = 26 ],(21,(18,23)[%bootstrapFrequency = 35 ])[%bootstrapFrequency = 22 ],28,35,(33,34)[%bootstrapFrequency = 33 ],(8,(9,(10,11)[%bootstrapFrequency = 46 ])[%bootstrapFrequency = 33 ])[%bootstrapFrequency = 18 ],24,22,25,(14,(26,27)[%bootstrapFrequency = 92 ])[%bootstrapFrequency = 22 ],(15,19)[%bootstrapFrequency = 60 ],(31,36,(30,(16,17)[%bootstrapFrequency = 38 ])[%bootstrapFrequency = 17 ])[%bootstrapFrequency = 13 ])[%bootstrapFrequency = 100 ])[%setBetweenDouble = 'string:bootstrapFrequency' ] [%unrooted = on ] [%unrooted = on ] [% setBetweenDouble = bootstrapFrequency ]; END; BEGIN TREES[!'Parameters: Trees obtained from file 20190321_morphAno_K12-tre.nex^n1 trees.']; Title 'morphA no outgroups 20190321 K=12 '; ID GW169a0eee7ed32; LINK Taxa = Eophreatoicus_and_Kakadubeh; TRANSLATE [0] n0 Mesamphisopus_capensis, [1] n1 Amphisopus_lintoni, [2] n2 Amphisopus_annectans, [3] n3 Paramphisopus_palustris, [4] n4 Phreatomerus_sp._Deadwoman_Spgs, [5] n5 Eremisopus_beei, [6] n6 Kakadubeh_rangemyahwurd, [7] n7 Eophreatoicus_kershawi, [8] n8 Eophreatoicus_mok, [9] n9 Eophreatoicus_kudjamarndi, [10] n10 Eophreatoicus_bodmemurrngkudji, [11] n11 Eophreatoicus_kurdabeyhmay, [12] n12 Eophreatoicus_gudjangah, [13] n13 Eophreatoicus_indjangarlwurr, [14] n14 Eophreatoicus_karrkkanj, [15] n15 Eophreatoicus_ngarradj, [16] n16 Eophreatoicus_mawoenewoene, [17] n17 Eophreatoicus_binjdjarrang, [18] n18 Eophreatoicus_djirrinjbal, [19] n19 Eophreatoicus_boywek, [20] n20 Eophreatoicus_kudjaldordo, [21] n21 Eophreatoicus_djurrukunja, [22] n22 Eophreatoicus_warnbi, [23] n23 Eophreatoicus_kurrih, [24] n24 Eophreatoicus_galunggul, [25] n25 Eophreatoicus_nawurlandja, [26] n26 Eophreatoicus_nawurlandja_Ga, [27] n27 Eophreatoicus_korokoro, [28] n28 Eophreatoicus_gubara, [29] n29 Eophreatoicus_namarrkon, [30] n30 Eophreatoicus_namimminya, [31] n31 Eophreatoicus_namarden, [32] n32 Eophreatoicus_barrkmarlam, [33] n33 Eophreatoicus_balbun, [34] n34 Eophreatoicus_warddebarrarn, [35] n35 Eophreatoicus_wurrkbaba; TREE 'tnt 1++' = (n6,(n24,((n21,((n12,n19),(n25,n26))),(n23,(((n30,n35),((n29,(n15,n16)),(n14,(n18,(n8,(n9,n10)))))),(n13,((n11,(n27,n31)),((n20,(n17,n22)),((n7,n28),(n34,(n32,n33))))))))))); END; BEGIN TREES[!'Parameters: Trees obtained from file 20190321_morphAno_K12jactre33_groupfreq.nex^n2 trees.']; Title 'Fig 11B morphA no outgroups K=12 jac 33 group freq'; ID GW169de55083b26; LINK Taxa = Eophreatoicus_and_Kakadubeh; TRANSLATE [0] 1 Mesamphisopus_capensis, [1] 2 Amphisopus_lintoni, [2] 3 Amphisopus_annectans, [3] 4 Paramphisopus_palustris, [4] 5 Phreatomerus_sp._Deadwoman_Spgs, [5] 6 Eremisopus_beei, [6] 7 Kakadubeh_rangemyahwurd, [7] 8 Eophreatoicus_kershawi, [8] 9 Eophreatoicus_mok, [9] 10 Eophreatoicus_kudjamarndi, [10] 11 Eophreatoicus_bodmemurrngkudji, [11] 12 Eophreatoicus_kurdabeyhmay, [12] 13 Eophreatoicus_gudjangah, [13] 14 Eophreatoicus_indjangarlwurr, [14] 15 Eophreatoicus_karrkkanj, [15] 16 Eophreatoicus_ngarradj, [16] 17 Eophreatoicus_mawoenewoene, [17] 18 Eophreatoicus_binjdjarrang, [18] 19 Eophreatoicus_djirrinjbal, [19] 20 Eophreatoicus_boywek, [20] 21 Eophreatoicus_kudjaldordo, [21] 22 Eophreatoicus_djurrukunja, [22] 23 Eophreatoicus_warnbi, [23] 24 Eophreatoicus_kurrih, [24] 25 Eophreatoicus_galunggul, [25] 26 Eophreatoicus_nawurlandja, [26] 27 Eophreatoicus_nawurlandja_Ga, [27] 28 Eophreatoicus_korokoro, [28] 29 Eophreatoicus_gubara, [29] 30 Eophreatoicus_namarrkon, [30] 31 Eophreatoicus_namimminya, [31] 32 Eophreatoicus_namarden, [32] 33 Eophreatoicus_barrkmarlam, [33] 34 Eophreatoicus_balbun, [34] 35 Eophreatoicus_warddebarrarn, [35] 36 Eophreatoicus_wurrkbaba; TREE 'Figure 11B morphA K12 group frequencies collapsed+' = (7,(25,(22,((13,20)[%bootstrapFrequency = 32 ],(26,27)[%bootstrapFrequency = 91 ])[%bootstrapFrequency = 23 ],24,(31,36)[%bootstrapFrequency = 25 ],(30,(16,17)[%bootstrapFrequency = 44 ])[%bootstrapFrequency = 19 ],15,19,(9,(10,11)[%bootstrapFrequency = 69 ])[%bootstrapFrequency = 41 ],14,(12,(28,32)[%bootstrapFrequency = 27 ])[%bootstrapFrequency = 19 ],(21,(18,23)[%bootstrapFrequency = 43 ])[%bootstrapFrequency = 27 ],(8,29)[%bootstrapFrequency = 21 ],35,(33,34)[%bootstrapFrequency = 34 ])[%bootstrapFrequency = 23 ])[%bootstrapFrequency = 100 ])[%setBetweenBits = 'string:selected' , setBetweenDouble = 'string:bootstrapFrequency' ] [%unrooted = on ] [%unrooted = on ] [% setBetweenDouble = bootstrapFrequency ]; END; BEGIN LABELS; TAXAGROUPLABEL outgroup COLOR = (RGB 1 1 0.56862745) ; TAXAGROUPLABEL Kakadubeh COLOR = (RGB 1 0.8 0.50196078) ; TAXAGROUPLABEL Eophreatoicus COLOR = (RGB 0.81176471 1 0.53333333) ; TAXAGROUPLABEL Eophreatoicus_unnamed COLOR = (RGB 0.66666667 1 0.86666667) ; END; BEGIN MESQUITECHARMODELS; ProbModelSet * UNTITLED = 'Mk1 (est.)': 1- 160; END; BEGIN NOTES; ALTTAXNAMES * UNTITLED = Mesamphisopus_capensis Amphisopus_lintoni Amphisopus_annectans Paramphisopus_palustris Phreatomerus_sp_Deadwoman_Springs Eremisopus_beei K_rangemyahwurd E_kershawi E_mok_LP E_kudjamarndi_R1 E_bodmemurrngkudji_R2 E_kurdabeyhmay_10 E_gudjangah_11 E_Indjangarlwurr_12 E_karrkkanj_14 E_ngarradj_N2 E_mawoenewoene_C1 E_binjdjarrang_C2 E_djirrinjbal_S1 E_boywek_Zr E_kudjaldordo_J2 E_djurrukunja_M1 E_warnbi_M2 E_kurrih_05 E_galunggul_Gb E_nawurlandja_01 E_nawurlandja_Ga E_korokoro_02 E_gubara_06 E_namarrkon_20 E_namimminya_08 E_namarden_09 E_barrkmarlam_4J E_balbun_4T E_warddebarrarn_3R E_wurrkbaba_13; ALTTAXNAMES Species_names_no_codes = Mesamphisopus_capensis Amphisopus_lintoni Amphisopus_annectans Paramphisopus_palustris Phreatomerus_sp._Deadwoman_Springs Eremisopus_beei Kakadubeh_rangemyahwurd E_kershawi E._mok E._kudjamarndi E._bodmemurrngkudji E._kurdabeyhmay E._gudjangah E._Indjangarlwurr E._karrkkanj E._ngarradj E._mawoenewoene E._binjdjarrang E._djirrinjbal E._boywek E._kudjaldordo E._djurrukunja E._warnbi E._kurrih E._galunggul E._nawurlandja 'E. nawurlandja [galunggul pop.]' E._korokoro E._gubara E._namarrkon E._namimminya E._namarden E._barrkmarlam E._balbun E._warddebarrarn E._wurrkbaba; ALTTAXNAMES Species_with_original_codes = Mesamphisopus_capensis Amphisopus_lintoni Amphisopus_annectans Paramphisopus_palustris Phreatomerus_sp_Deadwoman_Springs Eremisopus_beei K_rangemyahwurd E_kershawi E_mok_LP E_kudjamarndi_R1 E_bodmemurrngkudji_R2 E_kurdabeyhmay_10 E_gudjangah_11 E_Indjangarlwurr_12 E_karrkkanj_14 E_ngarradj_N2 E_mawoenewoene_C1 E_binjdjarrang_C2 E_djirrinjbal_S1 E_boywek_Zr E_kudjaldordo_J2 E_djurrukunja_M1 E_warnbi_M2 E_kurrih_05 E_galunggul_Gb E_nawurlandja_01 E_nawurlandja_galunggul E_korokoro_02 E_gubara_06 E_namarrkon_20 E_namimminya_08 E_namarden_09 E_barrkmarlam_4J E_balbun_4T E_warddebarrarn_3R E_wurrkbaba_13; END; Begin MESQUITE; MESQUITESCRIPTVERSION 2; TITLE AUTO; tell ProjectCoordinator; timeSaved 1588886822999; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; setID 0 5568473553140622839; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; setID 0 6589893468087552762; mqVersion 361; checksumv 0 3 3923528628 null getNumChars 160 numChars 160 getNumTaxa 36 numTaxa 36 short true bits 63 states 63 sumSquaresStatesOnly 39902.0 sumSquares 39902.0 longCompressibleToShort false usingShortMatrix true NumFiles 1 NumMatrices 1; mqVersion; endTell; getWindow; tell It; suppress; setResourcesState false false 392; setPopoutState 300; setExplanationSize 0; setAnnotationSize 0; setFontIncAnnot 0; setFontIncExp 0; setSize 1784 924; setLocation 131 28; setFont Arial; setFontSize 18; getToolPalette; tell It; endTell; desuppress; endTell; getEmployee #mesquite.minimal.ManageTaxa.ManageTaxa; tell It; showTaxa #5568473553140622839 #mesquite.lists.TaxonList.TaxonList; tell It; setTaxa #5568473553140622839; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.TaxonListCurrPartition.TaxonListCurrPartition; newAssistant #mesquite.molec.TaxaListHasData.TaxaListHasData; tell It; getMatrixSource #mesquite.charMatrices.CharMatrixCoordIndep.CharMatrixCoordIndep; tell It; setCharacterSource #mesquite.charMatrices.StoredMatrices.StoredMatrices; tell It; setDataSet #6589893468087552762; endTell; endTell; endTell; newAssistant #mesquite.lists.NumForTaxaList.NumForTaxaList; tell It; suppress; setValueTask #mesquite.treefarm.TerminalInstability.TerminalInstability; tell It; setExponent 2.0; setTreeSource #mesquite.trees.StoredTrees.StoredTrees; tell It; setTreeBlock 5; setTreeBlockID GW169a0e5587a27; toggleUseWeights off; endTell; setNumTrees 100; setSkipping 1; doCalc; endTell; toggleShadeCells on; desuppress; endTell; newAssistant #mesquite.lists.DefaultTaxaOrder.DefaultTaxaOrder; newAssistant #mesquite.lists.TaxonListArchivedName.TaxonListArchivedName; getTable; tell It; rowNamesWidth 376; columnWidth 0 229; columnWidth 1 144; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1392 852; setLocation 131 28; setFont Arial; setFontSize 18; getToolPalette; tell It; setTool mesquite.lists.TaxonList.TaxonListWindow.arrow; endTell; setActive; endTell; showWindow; getEmployee #mesquite.lists.ColorTaxon.ColorTaxon; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.lists.TaxonListAnnotPanel.TaxonListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; getEmployee #mesquite.trees.ManageTrees.ManageTrees; tell It; getTreeBlock 0; tell It; setSelected 4; attachments ; endTell; getTreeBlock 3; tell It; setSelected 1; attachments ; endTell; showTrees 1 #mesquite.lists.TreesList.TreesList; tell It; setTreeBlock 2; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.NumForTreeList.NumForTreeList; tell It; suppress; setValueTask #mesquite.trees.NumberOfTaxa.NumberOfTaxa; desuppress; endTell; newAssistant #mesquite.lists.TreeListRooted.TreeListRooted; newAssistant #mesquite.lists.TreeListPolys.TreeListPolys; newAssistant #mesquite.lists.TreeListPolyAssumption.TreeListPolyAssumption; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1392 852; setLocation 131 28; setFont Arial; setFontSize 18; getToolPalette; tell It; setTool mesquite.lists.TreesList.TreesListWindow.ibeam; endTell; endTell; showWindow; endTell; showTreeBlocks #mesquite.lists.TreeblockList.TreeblockList; tell It; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.TreeblocksListNumber.TreeblocksListNumber; newAssistant #mesquite.lists.TreeblocksListTaxa.TreeblocksListTaxa; getTable; tell It; rowNamesWidth 617; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1392 852; setLocation 131 28; setFont Arial; setFontSize 18; getToolPalette; tell It; setTool mesquite.lists.lib.ListableVectorWindow.ibeam; endTell; endTell; showWindow; endTell; endTell; getEmployee #mesquite.charMatrices.BasicDataWindowCoord.BasicDataWindowCoord; tell It; showDataWindow #6589893468087552762 #mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindowMaker; tell It; getWindow; tell It; getTable; tell It; rowNamesWidth 320; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1392 852; setLocation 131 28; setFont Arial; setFontSize 18; getToolPalette; tell It; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; endTell; setTool mesquite.charMatrices.BasicDataWindowMaker.BasicDataWindow.arrow; colorCells #mesquite.charMatrices.NoColor.NoColor; colorRowNames #mesquite.charMatrices.TaxonGroupColor.TaxonGroupColor; colorColumnNames #mesquite.charMatrices.CharGroupColor.CharGroupColor; colorText #mesquite.charMatrices.NoColor.NoColor; setBackground White; toggleShowNames on; toggleShowTaxonNames on; toggleTight off; toggleThinRows off; toggleShowChanges on; toggleSeparateLines off; toggleShowStates on; toggleReduceCellBorders off; toggleAutoWCharNames on; toggleAutoTaxonNames off; toggleShowDefaultCharNames off; toggleConstrainCW on; toggleBirdsEye off; toggleShowPaleGrid off; toggleShowPaleCellColors off; toggleShowPaleExcluded off; togglePaleInapplicable on; togglePaleMissing off; toggleShowBoldCellText off; toggleAllowAutosize on; toggleColorsPanel off; toggleDiagonal on; setDiagonalHeight 80; toggleLinkedScrolling on; toggleScrollLinkedTables off; endTell; showWindow; getWindow; tell It; forceAutosize; endTell; getEmployee #mesquite.charMatrices.AlterData.AlterData; tell It; toggleBySubmenus off; endTell; getEmployee #mesquite.charMatrices.ColorByState.ColorByState; tell It; setStateLimit 9; toggleUniformMaximum on; endTell; getEmployee #mesquite.charMatrices.ColorCells.ColorCells; tell It; setColor Red; removeColor off; endTell; getEmployee #mesquite.categ.StateNamesStrip.StateNamesStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.AnnotPanel.AnnotPanel; tell It; togglePanel off; endTell; getEmployee #mesquite.charMatrices.CharReferenceStrip.CharReferenceStrip; tell It; showStrip off; endTell; getEmployee #mesquite.charMatrices.QuickKeySelector.QuickKeySelector; tell It; autotabOff; endTell; getEmployee #mesquite.charMatrices.SelSummaryStrip.SelSummaryStrip; tell It; showStrip off; endTell; getEmployee #mesquite.silk.AnnotSummary.AnnotSummary; tell It; togglePanel off; endTell; getEmployee #mesquite.silk.CellImages.CellImages; tell It; togglePanel off; toggleAnnotations off; toggleSums off; toggleHistory off; toggleLocations off; endTell; getEmployee #mesquite.silk.StateImages.StateImages; tell It; togglePanel off; toggleStateAnnotations off; toggleCharAnnotations off; toggleLocations off; endTell; getEmployee #mesquite.silk.aaManageImageIndices.aaManageImageIndices; tell It; setLocal; reset; endTell; getEmployee #mesquite.categ.SmallStateNamesEditor.SmallStateNamesEditor; tell It; panelOpen true; endTell; endTell; endTell; getEmployee #mesquite.charMatrices.ManageCharacters.ManageCharacters; tell It; showDatasList #mesquite.lists.DatasetList.DatasetList; tell It; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.DatasetsListTaxa.DatasetsListTaxa; newAssistant #mesquite.lists.DatasetsListNumChars.DatasetsListNumChars; newAssistant #mesquite.lists.DatasetsListClass.DatasetsListClass; newAssistant #mesquite.lists.MatrixListVisible.MatrixListVisible; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1392 852; setLocation 131 28; setFont Arial; setFontSize 18; getToolPalette; tell It; endTell; endTell; showWindow; endTell; showCharacters #6589893468087552762 #mesquite.lists.CharacterList.CharacterList; tell It; setData 0; getWindow; tell It; useTargetValue off; setTargetValue ; newAssistant #mesquite.lists.DefaultCharOrder.DefaultCharOrder; newAssistant #mesquite.lists.CharListInclusion.CharListInclusion; newAssistant #mesquite.lists.BooleanForCharList.BooleanForCharList; tell It; suppress; setValueTask #mesquite.categ.CategVariable.CategVariable; desuppress; endTell; newAssistant #mesquite.lists.BooleanForCharList.BooleanForCharList; tell It; suppress; setValueTask #mesquite.thinkTrees.InformCharBoolean.InformCharBoolean; desuppress; endTell; getTable; tell It; rowNamesWidth 826; columnWidth 1 71; columnWidth 2 187; endTell; setExplanationSize 30; setAnnotationSize 20; setFontIncAnnot 0; setFontIncExp 0; setSize 1392 852; setLocation 131 28; setFont Arial; setFontSize 18; getToolPalette; tell It; setTool mesquite.lists.CharacterList.CharacterListWindow.sort; endTell; endTell; showWindow; getEmployee #mesquite.lists.CharListAnnotPanel.CharListAnnotPanel; tell It; togglePanel off; endTell; endTell; endTell; endTell; end;